@cleocode/core 2026.4.13 → 2026.4.14

package/dist/memory/brain-lifecycle.js

@@ -1,298 +0,0 @@
-/**
- * BRAIN lifecycle operations — temporal decay and memory consolidation.
- *
- * Reduces confidence of stale learnings based on age, following an
- * exponential decay model: new_confidence = confidence * (decayRate ^ daysSinceUpdate).
- *
- * Consolidation groups old observations by keyword overlap and merges
- * clusters into summary observations, archiving the originals.
- *
- * @task T5394 T5395
- * @epic T5149
- */
-import { createHash } from 'node:crypto';
-import { getBrainAccessor } from '../store/brain-accessor.js';
-import { typedAll } from '../store/typed-query.js';
-/**
- * Apply temporal decay to brain_learnings confidence values.
- *
- * Entries older than `olderThanDays` have their confidence reduced
- * by an exponential decay factor based on the number of days since
- * their last update (or creation if never updated).
- *
- * Formula: new_confidence = confidence * (decayRate ^ daysSinceUpdate)
- *
- * @param projectRoot - Project root directory for brain.db resolution
- * @param options - Decay configuration
- * @returns Count of updated rows and tables processed
- */
-export async function applyTemporalDecay(projectRoot, options) {
-    const decayRate = options?.decayRate ?? 0.995;
-    const olderThanDays = options?.olderThanDays ?? 30;
-    // Ensure brain.db is initialized
-    const { getBrainDb, getBrainNativeDb } = await import('../store/brain-sqlite.js');
-    await getBrainDb(projectRoot);
-    const nativeDb = getBrainNativeDb();
-    if (!nativeDb) {
-        return { updated: 0, tablesProcessed: [] };
-    }
-    // Calculate the cutoff date
-    const cutoffDate = new Date(Date.now() - olderThanDays * 24 * 60 * 60 * 1000)
-        .toISOString()
-        .replace('T', ' ')
-        .slice(0, 19);
-    // Update learnings: reduce confidence based on age since last update (or creation).
-    // SQLite's julianday function computes the difference in days.
-    // We use COALESCE to prefer updated_at over created_at for the age calculation.
-    const stmt = nativeDb.prepare(`
-    UPDATE brain_learnings
-    SET confidence = confidence * POWER(?, julianday('now') - julianday(COALESCE(updated_at, created_at))),
-        updated_at = datetime('now')
-    WHERE COALESCE(updated_at, created_at) < ?
-      AND confidence > 0.01
-  `);
-    const result = stmt.run(decayRate, cutoffDate);
-    const updated = typeof result.changes === 'number' ? result.changes : 0;
-    return {
-        updated,
-        tablesProcessed: ['brain_learnings'],
-    };
-}
-/** Stop words excluded from keyword extraction. */
-const STOP_WORDS = new Set([
-    'the',
-    'a',
-    'an',
-    'is',
-    'are',
-    'was',
-    'were',
-    'be',
-    'been',
-    'being',
-    'have',
-    'has',
-    'had',
-    'do',
-    'does',
-    'did',
-    'will',
-    'would',
-    'could',
-    'should',
-    'may',
-    'might',
-    'shall',
-    'can',
-    'need',
-    'dare',
-    'ought',
-    'used',
-    'to',
-    'of',
-    'in',
-    'for',
-    'on',
-    'with',
-    'at',
-    'by',
-    'from',
-    'as',
-    'into',
-    'through',
-    'during',
-    'before',
-    'after',
-    'above',
-    'below',
-    'between',
-    'out',
-    'off',
-    'over',
-    'under',
-    'again',
-    'further',
-    'then',
-    'once',
-    'and',
-    'but',
-    'or',
-    'nor',
-    'not',
-    'so',
-    'yet',
-    'both',
-    'either',
-    'neither',
-    'each',
-    'every',
-    'all',
-    'any',
-    'few',
-    'more',
-    'most',
-    'other',
-    'some',
-    'such',
-    'no',
-    'only',
-    'own',
-    'same',
-    'than',
-    'too',
-    'very',
-    'just',
-    'because',
-    'until',
-    'while',
-    'about',
-    'against',
-    'this',
-    'that',
-    'these',
-    'those',
-    'it',
-    'its',
-]);
-/**
- * Extract significant keywords from text for grouping.
- * Filters stop words and short tokens, returns lowercase words.
- */
-function extractKeywords(text) {
-    const words = text
-        .toLowerCase()
-        .replace(/[^a-z0-9\s-]/g, '')
-        .split(/\s+/);
-    const keywords = new Set();
-    for (const w of words) {
-        if (w.length >= 4 && !STOP_WORDS.has(w)) {
-            keywords.add(w);
-        }
-    }
-    return keywords;
-}
-/**
- * Calculate keyword overlap ratio between two sets.
- * Returns the Jaccard similarity coefficient.
- */
-function keywordOverlap(a, b) {
-    if (a.size === 0 || b.size === 0)
-        return 0;
-    let intersection = 0;
-    for (const w of a) {
-        if (b.has(w))
-            intersection++;
-    }
-    const union = a.size + b.size - intersection;
-    return union > 0 ? intersection / union : 0;
-}
-/**
- * Consolidate old observations by keyword similarity.
- *
- * Groups observations older than `olderThanDays` by FTS5 keyword overlap.
- * For groups with at least `minClusterSize` entries, creates one summary
- * observation and marks originals as archived (updated_at set, narrative
- * prefixed with [ARCHIVED]).
- *
- * @param projectRoot - Project root directory for brain.db resolution
- * @param options - Consolidation configuration
- * @returns Counts of grouped, merged, and archived observations
- */
-export async function consolidateMemories(projectRoot, options) {
-    const olderThanDays = options?.olderThanDays ?? 90;
-    const minClusterSize = options?.minClusterSize ?? 3;
-    const { getBrainDb, getBrainNativeDb } = await import('../store/brain-sqlite.js');
-    await getBrainDb(projectRoot);
-    const nativeDb = getBrainNativeDb();
-    if (!nativeDb) {
-        return { grouped: 0, merged: 0, archived: 0 };
-    }
-    const cutoffDate = new Date(Date.now() - olderThanDays * 24 * 60 * 60 * 1000)
-        .toISOString()
-        .replace('T', ' ')
-        .slice(0, 19);
-    // Fetch old observations that are not already archived
-    const stmt = nativeDb.prepare(`
-    SELECT id, type, title, narrative, project, created_at
-    FROM brain_observations
-    WHERE created_at < ?
-      AND narrative NOT LIKE '[ARCHIVED]%'
-    ORDER BY created_at DESC
-  `);
-    const oldObservations = typedAll(stmt, cutoffDate);
-    if (oldObservations.length < minClusterSize) {
-        return { grouped: 0, merged: 0, archived: 0 };
-    }
-    // Extract keywords for each observation
-    const entries = oldObservations.map((obs) => ({
-        ...obs,
-        keywords: extractKeywords(`${obs.title} ${obs.narrative ?? ''}`),
-        clustered: false,
-    }));
-    // Greedy clustering: group by keyword overlap >= 0.3
-    const clusters = [];
-    const overlapThreshold = 0.3;
-    for (let i = 0; i < entries.length; i++) {
-        if (entries[i].clustered)
-            continue;
-        const cluster = [entries[i]];
-        entries[i].clustered = true;
-        for (let j = i + 1; j < entries.length; j++) {
-            if (entries[j].clustered)
-                continue;
-            if (entries[i].type !== entries[j].type)
-                continue;
-            const overlap = keywordOverlap(entries[i].keywords, entries[j].keywords);
-            if (overlap >= overlapThreshold) {
-                cluster.push(entries[j]);
-                entries[j].clustered = true;
-            }
-        }
-        if (cluster.length >= minClusterSize) {
-            clusters.push(cluster);
-        }
-    }
-    let grouped = 0;
-    let merged = 0;
-    let archived = 0;
-    const accessor = await getBrainAccessor(projectRoot);
-    const now = new Date().toISOString().replace('T', ' ').slice(0, 19);
-    for (const cluster of clusters) {
-        grouped += cluster.length;
-        // Create summary observation from cluster
-        const titles = cluster.map((c) => c.title).join('; ');
-        const summaryTitle = `Consolidated: ${cluster[0].type} observations (${cluster.length} entries)`;
-        const summaryNarrative = `Merged from ${cluster.length} observations: ${titles.slice(0, 500)}`;
-        const contentHash = createHash('sha256')
-            .update(summaryTitle + summaryNarrative)
-            .digest('hex')
-            .slice(0, 16);
-        const id = `O-${Date.now().toString(36)}`;
-        await accessor.addObservation({
-            id,
-            type: cluster[0]
-                .type,
-            title: summaryTitle,
-            narrative: summaryNarrative,
-            contentHash,
-            project: cluster[0].project ?? null,
-            sourceType: 'agent',
-            createdAt: now,
-        });
-        merged++;
-        // Archive originals by prefixing narrative
-        for (const obs of cluster) {
-            nativeDb
-                .prepare(`
-        UPDATE brain_observations
-        SET narrative = '[ARCHIVED] ' || COALESCE(narrative, ''),
-            updated_at = ?
-        WHERE id = ?
-      `)
-                .run(now, obs.id);
-            archived++;
-        }
-    }
-    return { grouped, merged, archived };
-}
-//# sourceMappingURL=brain-lifecycle.js.map

package/dist/memory/brain-lifecycle.js.map

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package/dist/memory/brain-links.js

@@ -1,161 +0,0 @@
-/**
- * Cross-reference management between BRAIN memory entries and tasks.
- *
- * Provides linking/unlinking and query functions for relationships
- * between decisions, patterns, learnings and CLEO tasks.
- *
- * @task T5156
- * @epic T5149
- */
-import { getBrainAccessor } from '../store/brain-accessor.js';
-import { taskExistsInTasksDb } from '../store/cross-db-cleanup.js';
-import { getDb } from '../store/sqlite.js';
-/**
- * Link a memory entry to a task.
- *
- * @task T5156
- */
-export async function linkMemoryToTask(projectRoot, memoryType, memoryId, taskId, linkType) {
-    if (!memoryId || !taskId) {
-        throw new Error('memoryId and taskId are required');
-    }
-    // Write-guard: reject stale task IDs before creating cross-db reference
-    const tasksDb = await getDb(projectRoot);
-    if (!(await taskExistsInTasksDb(taskId, tasksDb))) {
-        throw new Error(`Write-guard: task ${taskId} does not exist in tasks.db — refusing to create brain link`);
-    }
-    const accessor = await getBrainAccessor(projectRoot);
-    // Check if link already exists
-    const existingLinks = await accessor.getLinksForMemory(memoryType, memoryId);
-    const duplicate = existingLinks.find((l) => l.taskId === taskId && l.linkType === linkType);
-    if (duplicate) {
-        return duplicate;
-    }
-    await accessor.addLink({
-        memoryType,
-        memoryId,
-        taskId,
-        linkType,
-    });
-    // Return the created link
-    const links = await accessor.getLinksForMemory(memoryType, memoryId);
-    return links.find((l) => l.taskId === taskId && l.linkType === linkType);
-}
-/**
- * Remove a link between a memory entry and a task.
- *
- * @task T5156
- */
-export async function unlinkMemoryFromTask(projectRoot, memoryType, memoryId, taskId, linkType) {
-    const accessor = await getBrainAccessor(projectRoot);
-    await accessor.removeLink(memoryType, memoryId, taskId, linkType);
-}
-/**
- * Get all memory entries linked to a specific task.
- *
- * @task T5156
- */
-export async function getTaskLinks(projectRoot, taskId) {
-    const accessor = await getBrainAccessor(projectRoot);
-    return accessor.getLinksForTask(taskId);
-}
-/**
- * Get all tasks linked to a specific memory entry.
- *
- * @task T5156
- */
-export async function getMemoryLinks(projectRoot, memoryType, memoryId) {
-    const accessor = await getBrainAccessor(projectRoot);
-    return accessor.getLinksForMemory(memoryType, memoryId);
-}
-/**
- * Batch create multiple links at once.
- *
- * @task T5156
- */
-export async function bulkLink(projectRoot, links) {
-    const accessor = await getBrainAccessor(projectRoot);
-    const tasksDb = await getDb(projectRoot);
-    let created = 0;
-    let skipped = 0;
-    for (const link of links) {
-        // Write-guard: reject stale task IDs before creating cross-db reference
-        if (!(await taskExistsInTasksDb(link.taskId, tasksDb))) {
-            skipped++;
-            continue;
-        }
-        // Check for duplicate
-        const existing = await accessor.getLinksForMemory(link.memoryType, link.memoryId);
-        const duplicate = existing.find((l) => l.taskId === link.taskId && l.linkType === link.linkType);
-        if (duplicate) {
-            skipped++;
-            continue;
-        }
-        await accessor.addLink({
-            memoryType: link.memoryType,
-            memoryId: link.memoryId,
-            taskId: link.taskId,
-            linkType: link.linkType,
-        });
-        created++;
-    }
-    return { created, skipped };
-}
-/**
- * Get all decisions linked to a task.
- * Convenience method that fetches full decision rows.
- *
- * @task T5156
- */
-export async function getLinkedDecisions(projectRoot, taskId) {
-    const accessor = await getBrainAccessor(projectRoot);
-    const links = await accessor.getLinksForTask(taskId);
-    const decisionLinks = links.filter((l) => l.memoryType === 'decision');
-    const decisions = [];
-    for (const link of decisionLinks) {
-        const decision = await accessor.getDecision(link.memoryId);
-        if (decision) {
-            decisions.push(decision);
-        }
-    }
-    return decisions;
-}
-/**
- * Get all patterns linked to a task.
- * Convenience method that fetches full pattern rows.
- *
- * @task T5156
- */
-export async function getLinkedPatterns(projectRoot, taskId) {
-    const accessor = await getBrainAccessor(projectRoot);
-    const links = await accessor.getLinksForTask(taskId);
-    const patternLinks = links.filter((l) => l.memoryType === 'pattern');
-    const patterns = [];
-    for (const link of patternLinks) {
-        const pattern = await accessor.getPattern(link.memoryId);
-        if (pattern) {
-            patterns.push(pattern);
-        }
-    }
-    return patterns;
-}
-/**
- * Get all learnings linked to a task.
- * Convenience method that fetches full learning rows.
- *
- * @task T5156
- */
-export async function getLinkedLearnings(projectRoot, taskId) {
-    const accessor = await getBrainAccessor(projectRoot);
-    const links = await accessor.getLinksForTask(taskId);
-    const learningLinks = links.filter((l) => l.memoryType === 'learning');
-    const learnings = [];
-    for (const link of learningLinks) {
-        const learning = await accessor.getLearning(link.memoryId);
-        if (learning) {
-            learnings.push(learning);
-        }
-    }
-    return learnings;
-}
-//# sourceMappingURL=brain-links.js.map

package/dist/memory/brain-links.js.map

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package/dist/memory/brain-maintenance.js

@@ -1,114 +0,0 @@
-/**
- * Brain Maintenance Runner
- *
- * Combines temporal decay, memory consolidation, and embedding backfill
- * into a single idempotent maintenance pass. Designed to be run on a
- * schedule or on-demand via `cleo brain maintenance`.
- *
- * Steps run in order:
- *   1. Temporal decay   — reduce confidence of stale learnings
- *   2. Consolidation    — merge duplicate/similar old observations
- *   3. Embedding backfill — populate vectors for observations without them
- *
- * Each step is individually opt-outable via skip flags, making the
- * operation safe to re-run at any frequency.
- *
- * @task T143
- * @epic T134
- * @why Enable scheduled brain optimization via single command
- * @what Combined maintenance runner with CLI command and progress reporting
- */
-import { reconcileOrphanedRefs } from '../store/cross-db-cleanup.js';
-import { applyTemporalDecay, consolidateMemories } from './brain-lifecycle.js';
-import { populateEmbeddings } from './brain-retrieval.js';
-// ============================================================================
-// Runner
-// ============================================================================
-/**
- * Run a combined brain maintenance pass: decay, consolidation, and embeddings.
- *
- * The three steps always run in the same order:
- *   1. `applyTemporalDecay` — decay stale learning confidence values
- *   2. `consolidateMemories` — merge clustered old observations
- *   3. `populateEmbeddings` — backfill missing vectors
- *
- * Each step is optional via the `skip*` flags. The function is idempotent:
- * re-running it when there is nothing to process returns zero counts.
- *
- * @param projectRoot - Absolute path to the project root (used to locate brain.db)
- * @param options - Optional skip flags and progress callback
- * @returns Aggregated counts from each step plus total wall-clock duration
- *
- * @example
- * ```ts
- * const result = await runBrainMaintenance('/my/project', {
- *   onProgress: (step, current, total) => {
- *     console.log(`[${step}] ${current}/${total}`);
- *   },
- * });
- * console.log(`Done in ${result.duration}ms`);
- * ```
- *
- * @task T143
- * @epic T134
- */
-export async function runBrainMaintenance(projectRoot, options) {
-    const { skipDecay = false, skipConsolidation = false, skipReconciliation = false, skipEmbeddings = false, onProgress, } = options ?? {};
-    const startTime = Date.now();
-    // Default zero values for each step (used when step is skipped).
-    const decayResult = { affected: 0 };
-    const consolidationResult = { merged: 0, removed: 0 };
-    const reconciliationResult = {
-        decisionsFixed: 0,
-        observationsFixed: 0,
-        linksRemoved: 0,
-    };
-    const embeddingsResult = {
-        processed: 0,
-        skipped: 0,
-        errors: 0,
-    };
-    // Step 1: Temporal decay
-    if (!skipDecay) {
-        onProgress?.('decay', 0, 1);
-        const raw = await applyTemporalDecay(projectRoot);
-        decayResult.affected = raw.updated;
-        onProgress?.('decay', 1, 1);
-    }
-    // Step 2: Memory consolidation
-    if (!skipConsolidation) {
-        onProgress?.('consolidation', 0, 1);
-        const raw = await consolidateMemories(projectRoot);
-        consolidationResult.merged = raw.merged;
-        consolidationResult.removed = raw.archived;
-        onProgress?.('consolidation', 1, 1);
-    }
-    // Step 3: Cross-DB orphaned reference reconciliation
-    if (!skipReconciliation) {
-        onProgress?.('reconciliation', 0, 1);
-        const raw = await reconcileOrphanedRefs(projectRoot);
-        reconciliationResult.decisionsFixed = raw.decisionsFixed;
-        reconciliationResult.observationsFixed = raw.observationsFixed;
-        reconciliationResult.linksRemoved = raw.linksRemoved;
-        onProgress?.('reconciliation', 1, 1);
-    }
-    // Step 4: Embedding backfill (with per-item progress relay)
-    if (!skipEmbeddings) {
-        const raw = await populateEmbeddings(projectRoot, {
-            onProgress: (current, total) => {
-                onProgress?.('embeddings', current, total);
-            },
-        });
-        embeddingsResult.processed = raw.processed;
-        embeddingsResult.skipped = raw.skipped;
-        embeddingsResult.errors = raw.errors;
-    }
-    return {
-        decay: decayResult,
-        consolidation: consolidationResult,
-        reconciliation: reconciliationResult,
-        embeddings: embeddingsResult,
-        duration: Date.now() - startTime,
-    };
-}
-//# sourceMappingURL=brain-maintenance.js.map

package/dist/memory/brain-maintenance.js.map

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