@cleocode/core 2026.4.0 → 2026.4.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1282) hide show
  1. package/dist/audit.d.ts +1 -1
  2. package/dist/audit.d.ts.map +1 -1
  3. package/dist/bootstrap.d.ts +2 -2
  4. package/dist/bootstrap.d.ts.map +1 -1
  5. package/dist/caamp/adapter.d.ts +6 -49
  6. package/dist/caamp/adapter.d.ts.map +1 -1
  7. package/dist/caamp/index.d.ts +2 -2
  8. package/dist/caamp/index.d.ts.map +1 -1
  9. package/dist/code/parser.d.ts +2 -0
  10. package/dist/code/parser.d.ts.map +1 -1
  11. package/dist/compliance/protocol-enforcement.d.ts +1 -1
  12. package/dist/compliance/protocol-rules.d.ts +1 -1
  13. package/dist/compliance/protocol-types.d.ts +2 -3
  14. package/dist/compliance/protocol-types.d.ts.map +1 -1
  15. package/dist/conduit/conduit-client.d.ts +5 -0
  16. package/dist/conduit/conduit-client.d.ts.map +1 -1
  17. package/dist/conduit/factory.d.ts +9 -1
  18. package/dist/conduit/factory.d.ts.map +1 -1
  19. package/dist/conduit/http-transport.d.ts +1 -1
  20. package/dist/conduit/http-transport.d.ts.map +1 -1
  21. package/dist/crypto/credentials.d.ts.map +1 -1
  22. package/dist/error-catalog.d.ts +3 -3
  23. package/dist/error-catalog.d.ts.map +1 -1
  24. package/dist/errors.d.ts +1 -1
  25. package/dist/hooks/handlers/index.d.ts +2 -2
  26. package/dist/hooks/handlers/index.d.ts.map +1 -1
  27. package/dist/hooks/handlers/notification-hooks.d.ts +31 -0
  28. package/dist/hooks/handlers/notification-hooks.d.ts.map +1 -0
  29. package/dist/index.d.ts +0 -1
  30. package/dist/index.d.ts.map +1 -1
  31. package/dist/index.js +863 -1044
  32. package/dist/index.js.map +4 -4
  33. package/dist/init.d.ts +6 -6
  34. package/dist/init.d.ts.map +1 -1
  35. package/dist/injection.d.ts.map +1 -1
  36. package/dist/internal.d.ts +5 -5
  37. package/dist/internal.d.ts.map +1 -1
  38. package/dist/logger.d.ts +3 -3
  39. package/dist/memory/brain-retrieval.d.ts +1 -1
  40. package/dist/memory/engine-compat.d.ts +392 -25
  41. package/dist/memory/engine-compat.d.ts.map +1 -1
  42. package/dist/memory/index.d.ts +416 -3
  43. package/dist/memory/index.d.ts.map +1 -1
  44. package/dist/metrics/token-service.d.ts +3 -3
  45. package/dist/metrics/token-service.d.ts.map +1 -1
  46. package/dist/paths.d.ts +335 -2
  47. package/dist/paths.d.ts.map +1 -1
  48. package/dist/routing/capability-matrix.d.ts +3 -3
  49. package/dist/routing/capability-matrix.d.ts.map +1 -1
  50. package/dist/scaffold.d.ts +422 -11
  51. package/dist/scaffold.d.ts.map +1 -1
  52. package/dist/security/input-sanitization.d.ts +2 -2
  53. package/dist/sessions/index.d.ts.map +1 -1
  54. package/dist/skills/dynamic-skill-generator.d.ts +3 -2
  55. package/dist/skills/dynamic-skill-generator.d.ts.map +1 -1
  56. package/dist/skills/routing-table.d.ts +4 -4
  57. package/dist/skills/routing-table.d.ts.map +1 -1
  58. package/dist/store/provider.d.ts +1 -1
  59. package/dist/store/sqlite.d.ts +1 -1
  60. package/dist/store/tasks-schema.d.ts +4 -4
  61. package/dist/store/tasks-schema.d.ts.map +1 -1
  62. package/dist/store/validation-schemas.d.ts +4 -5
  63. package/dist/store/validation-schemas.d.ts.map +1 -1
  64. package/dist/system/archive-analytics.d.ts +1 -1
  65. package/dist/system/health.d.ts +1 -1
  66. package/dist/system/health.d.ts.map +1 -1
  67. package/dist/system/runtime.d.ts +2 -1
  68. package/dist/system/runtime.d.ts.map +1 -1
  69. package/dist/tasks/list.d.ts +1 -1
  70. package/dist/tasks/list.d.ts.map +1 -1
  71. package/dist/tasks/task-ops.d.ts +415 -3
  72. package/dist/tasks/task-ops.d.ts.map +1 -1
  73. package/dist/tasks/update.d.ts.map +1 -1
  74. package/dist/templates/parser.d.ts +1 -1
  75. package/dist/ui/index.d.ts +1 -1
  76. package/dist/upgrade.d.ts +1 -1
  77. package/dist/upgrade.d.ts.map +1 -1
  78. package/dist/validation/operation-gate-validators.d.ts +1 -1
  79. package/dist/validation/operation-verification-gates.d.ts +3 -3
  80. package/dist/validation/param-utils.d.ts +6 -5
  81. package/dist/validation/param-utils.d.ts.map +1 -1
  82. package/dist/validation/validate-ops.d.ts +1 -1
  83. package/dist/validation/validate-ops.d.ts.map +1 -1
  84. package/package.json +13 -11
  85. package/src/__tests__/caamp-skill-install.test.js +0 -15
  86. package/src/__tests__/caamp-skill-install.test.js.map +1 -1
  87. package/src/__tests__/caamp-skill-install.test.ts +0 -16
  88. package/src/__tests__/injection-mvi-tiers.test.js +7 -7
  89. package/src/__tests__/injection-mvi-tiers.test.js.map +1 -1
  90. package/src/__tests__/injection-mvi-tiers.test.ts +55 -103
  91. package/src/audit.ts +2 -2
  92. package/src/bootstrap.ts +5 -39
  93. package/src/caamp/adapter.ts +3 -219
  94. package/src/caamp/index.ts +1 -13
  95. package/src/cant/__tests__/cant-agent-parse.test.d.ts.map +1 -0
  96. package/src/cant/__tests__/cant-agent-parse.test.js +77 -0
  97. package/src/cant/__tests__/cant-agent-parse.test.js.map +1 -0
  98. package/src/code/parser.ts +35 -3
  99. package/src/codebase-map/analyzers/architecture.ts +2 -2
  100. package/src/compliance/protocol-enforcement.ts +1 -1
  101. package/src/compliance/protocol-rules.ts +1 -1
  102. package/src/compliance/protocol-types.ts +2 -3
  103. package/src/conduit/__tests__/dual-api-e2e.test.d.ts.map +1 -0
  104. package/src/conduit/__tests__/dual-api-e2e.test.js +178 -0
  105. package/src/conduit/__tests__/dual-api-e2e.test.js.map +1 -0
  106. package/src/conduit/__tests__/local-credential-flow.test.d.ts.map +1 -0
  107. package/src/conduit/__tests__/local-credential-flow.test.js +185 -0
  108. package/src/conduit/__tests__/local-credential-flow.test.js.map +1 -0
  109. package/src/conduit/__tests__/local-transport.test.d.ts.map +1 -0
  110. package/src/conduit/__tests__/local-transport.test.js +404 -0
  111. package/src/conduit/__tests__/local-transport.test.js.map +1 -0
  112. package/src/conduit/__tests__/local-transport.test.ts +189 -0
  113. package/src/conduit/__tests__/sse-transport.test.d.ts.map +1 -0
  114. package/src/conduit/__tests__/sse-transport.test.js +291 -0
  115. package/src/conduit/__tests__/sse-transport.test.js.map +1 -0
  116. package/src/conduit/__tests__/sse-transport.test.ts +1 -1
  117. package/src/conduit/conduit-client.ts +5 -0
  118. package/src/conduit/factory.ts +25 -8
  119. package/src/conduit/http-transport.ts +3 -2
  120. package/src/crypto/credentials.ts +59 -13
  121. package/src/error-catalog.ts +3 -3
  122. package/src/errors.ts +1 -1
  123. package/src/hooks/__tests__/provider-hooks.test.js +4 -4
  124. package/src/hooks/__tests__/provider-hooks.test.js.map +1 -1
  125. package/src/hooks/__tests__/provider-hooks.test.ts +4 -4
  126. package/src/hooks/handlers/__tests__/hook-automation-e2e.test.js +2 -2
  127. package/src/hooks/handlers/__tests__/hook-automation-e2e.test.js.map +1 -1
  128. package/src/hooks/handlers/__tests__/hook-automation-e2e.test.ts +6 -4
  129. package/src/hooks/handlers/index.ts +2 -6
  130. package/src/hooks/handlers/notification-hooks.ts +65 -0
  131. package/src/index.ts +1 -1
  132. package/src/init.ts +14 -54
  133. package/src/injection.ts +4 -3
  134. package/src/internal.ts +7 -9
  135. package/src/logger.ts +5 -5
  136. package/src/memory/__tests__/brain-links.test.js +13 -0
  137. package/src/memory/__tests__/brain-links.test.js.map +1 -1
  138. package/src/memory/__tests__/brain-retrieval.test.js +9 -0
  139. package/src/memory/__tests__/brain-retrieval.test.js.map +1 -1
  140. package/src/memory/__tests__/session-memory.test.js +16 -0
  141. package/src/memory/__tests__/session-memory.test.js.map +1 -1
  142. package/src/memory/brain-retrieval.ts +1 -1
  143. package/src/memory/engine-compat.ts +392 -25
  144. package/src/memory/index.ts +417 -4
  145. package/src/metrics/token-service.ts +4 -4
  146. package/src/migration/index.ts +1 -1
  147. package/src/paths.ts +340 -5
  148. package/src/routing/capability-matrix.ts +49 -49
  149. package/src/scaffold.ts +428 -70
  150. package/src/security/input-sanitization.ts +4 -4
  151. package/src/sessions/__tests__/session-grade.integration.test.js +9 -9
  152. package/src/sessions/__tests__/session-grade.integration.test.ts +9 -9
  153. package/src/sessions/__tests__/session-grade.test.js +10 -10
  154. package/src/sessions/__tests__/session-grade.test.js.map +1 -1
  155. package/src/sessions/__tests__/session-grade.test.ts +10 -10
  156. package/src/sessions/index.ts +12 -7
  157. package/src/sessions/session-grade.ts +4 -4
  158. package/src/skills/__tests__/dynamic-skill-generator.test.js +24 -26
  159. package/src/skills/__tests__/dynamic-skill-generator.test.js.map +1 -1
  160. package/src/skills/__tests__/dynamic-skill-generator.test.ts +24 -26
  161. package/src/skills/__tests__/routing-table.test.js +22 -22
  162. package/src/skills/__tests__/routing-table.test.js.map +1 -1
  163. package/src/skills/__tests__/routing-table.test.ts +23 -23
  164. package/src/skills/dynamic-skill-generator.ts +13 -24
  165. package/src/skills/routing-table.ts +4 -4
  166. package/src/store/__tests__/data-safety-central.test.js +8 -0
  167. package/src/store/__tests__/data-safety-central.test.js.map +1 -1
  168. package/src/store/__tests__/data-safety-central.test.ts +8 -0
  169. package/src/store/__tests__/safety-accessor.test.js +8 -0
  170. package/src/store/__tests__/safety-accessor.test.js.map +1 -1
  171. package/src/store/__tests__/safety-accessor.test.ts +8 -0
  172. package/src/store/provider.ts +2 -2
  173. package/src/store/sqlite.ts +2 -2
  174. package/src/store/tasks-schema.ts +2 -2
  175. package/src/system/__tests__/health.test.js +2 -2
  176. package/src/system/__tests__/health.test.js.map +1 -1
  177. package/src/system/archive-analytics.ts +1 -1
  178. package/src/system/health.ts +11 -6
  179. package/src/system/inject-generate.ts +20 -20
  180. package/src/system/runtime.ts +5 -4
  181. package/src/tasks/atomicity.ts +1 -1
  182. package/src/tasks/list.ts +1 -1
  183. package/src/tasks/task-ops.ts +415 -3
  184. package/src/tasks/update.ts +8 -0
  185. package/src/templates/parser.ts +1 -1
  186. package/src/ui/index.ts +4 -4
  187. package/src/upgrade.ts +3 -14
  188. package/src/validation/operation-gate-validators.ts +1 -1
  189. package/src/validation/operation-verification-gates.ts +3 -3
  190. package/src/validation/param-utils.ts +11 -10
  191. package/src/validation/validate-ops.ts +6 -6
  192. package/templates/CLEO-INJECTION.md +38 -110
  193. package/dist/adapters/adapter-registry.js +0 -64
  194. package/dist/adapters/adapter-registry.js.map +0 -1
  195. package/dist/adapters/discovery.js +0 -83
  196. package/dist/adapters/discovery.js.map +0 -1
  197. package/dist/adapters/index.js +0 -9
  198. package/dist/adapters/index.js.map +0 -1
  199. package/dist/adapters/manager.js +0 -260
  200. package/dist/adapters/manager.js.map +0 -1
  201. package/dist/admin/export-tasks.js +0 -171
  202. package/dist/admin/export-tasks.js.map +0 -1
  203. package/dist/admin/export.js +0 -103
  204. package/dist/admin/export.js.map +0 -1
  205. package/dist/admin/help.js +0 -106
  206. package/dist/admin/help.js.map +0 -1
  207. package/dist/admin/import-tasks.js +0 -182
  208. package/dist/admin/import-tasks.js.map +0 -1
  209. package/dist/admin/import.js +0 -129
  210. package/dist/admin/import.js.map +0 -1
  211. package/dist/admin/index.js +0 -13
  212. package/dist/admin/index.js.map +0 -1
  213. package/dist/adrs/find.js +0 -134
  214. package/dist/adrs/find.js.map +0 -1
  215. package/dist/adrs/index.js +0 -15
  216. package/dist/adrs/index.js.map +0 -1
  217. package/dist/adrs/link-pipeline.js +0 -160
  218. package/dist/adrs/link-pipeline.js.map +0 -1
  219. package/dist/adrs/list.js +0 -43
  220. package/dist/adrs/list.js.map +0 -1
  221. package/dist/adrs/parse.js +0 -51
  222. package/dist/adrs/parse.js.map +0 -1
  223. package/dist/adrs/show.js +0 -22
  224. package/dist/adrs/show.js.map +0 -1
  225. package/dist/adrs/sync.js +0 -188
  226. package/dist/adrs/sync.js.map +0 -1
  227. package/dist/adrs/types.js +0 -9
  228. package/dist/adrs/types.js.map +0 -1
  229. package/dist/adrs/validate.js +0 -57
  230. package/dist/adrs/validate.js.map +0 -1
  231. package/dist/agents/agent-registry.js +0 -288
  232. package/dist/agents/agent-registry.js.map +0 -1
  233. package/dist/agents/agent-schema.js +0 -85
  234. package/dist/agents/agent-schema.js.map +0 -1
  235. package/dist/agents/capacity.js +0 -116
  236. package/dist/agents/capacity.js.map +0 -1
  237. package/dist/agents/execution-learning.js +0 -474
  238. package/dist/agents/execution-learning.js.map +0 -1
  239. package/dist/agents/health-monitor.js +0 -217
  240. package/dist/agents/health-monitor.js.map +0 -1
  241. package/dist/agents/index.js +0 -29
  242. package/dist/agents/index.js.map +0 -1
  243. package/dist/agents/registry.js +0 -314
  244. package/dist/agents/registry.js.map +0 -1
  245. package/dist/agents/retry.js +0 -215
  246. package/dist/agents/retry.js.map +0 -1
  247. package/dist/audit-prune.js +0 -94
  248. package/dist/audit-prune.js.map +0 -1
  249. package/dist/audit.js +0 -68
  250. package/dist/audit.js.map +0 -1
  251. package/dist/backfill/index.js +0 -229
  252. package/dist/backfill/index.js.map +0 -1
  253. package/dist/bootstrap.js +0 -367
  254. package/dist/bootstrap.js.map +0 -1
  255. package/dist/caamp/adapter.js +0 -434
  256. package/dist/caamp/adapter.js.map +0 -1
  257. package/dist/caamp/capability-check.js +0 -38
  258. package/dist/caamp/capability-check.js.map +0 -1
  259. package/dist/caamp/index.js +0 -23
  260. package/dist/caamp/index.js.map +0 -1
  261. package/dist/caamp-init.js +0 -16
  262. package/dist/caamp-init.js.map +0 -1
  263. package/dist/cant/approval.js +0 -185
  264. package/dist/cant/approval.js.map +0 -1
  265. package/dist/cant/context-builder.js +0 -117
  266. package/dist/cant/context-builder.js.map +0 -1
  267. package/dist/cant/discretion.js +0 -116
  268. package/dist/cant/discretion.js.map +0 -1
  269. package/dist/cant/index.js +0 -23
  270. package/dist/cant/index.js.map +0 -1
  271. package/dist/cant/parallel-runner.js +0 -173
  272. package/dist/cant/parallel-runner.js.map +0 -1
  273. package/dist/cant/types.js +0 -11
  274. package/dist/cant/types.js.map +0 -1
  275. package/dist/cant/workflow-executor.js +0 -440
  276. package/dist/cant/workflow-executor.js.map +0 -1
  277. package/dist/cleo.js +0 -322
  278. package/dist/cleo.js.map +0 -1
  279. package/dist/codebase-map/analyzers/architecture.js +0 -130
  280. package/dist/codebase-map/analyzers/architecture.js.map +0 -1
  281. package/dist/codebase-map/analyzers/concerns.js +0 -122
  282. package/dist/codebase-map/analyzers/concerns.js.map +0 -1
  283. package/dist/codebase-map/analyzers/conventions.js +0 -149
  284. package/dist/codebase-map/analyzers/conventions.js.map +0 -1
  285. package/dist/codebase-map/analyzers/integrations.js +0 -108
  286. package/dist/codebase-map/analyzers/integrations.js.map +0 -1
  287. package/dist/codebase-map/analyzers/stack.js +0 -117
  288. package/dist/codebase-map/analyzers/stack.js.map +0 -1
  289. package/dist/codebase-map/analyzers/structure.js +0 -137
  290. package/dist/codebase-map/analyzers/structure.js.map +0 -1
  291. package/dist/codebase-map/analyzers/testing.js +0 -118
  292. package/dist/codebase-map/analyzers/testing.js.map +0 -1
  293. package/dist/codebase-map/index.js +0 -57
  294. package/dist/codebase-map/index.js.map +0 -1
  295. package/dist/codebase-map/store.js +0 -122
  296. package/dist/codebase-map/store.js.map +0 -1
  297. package/dist/codebase-map/summary.js +0 -152
  298. package/dist/codebase-map/summary.js.map +0 -1
  299. package/dist/compliance/index.js +0 -288
  300. package/dist/compliance/index.js.map +0 -1
  301. package/dist/compliance/protocol-enforcement.js +0 -332
  302. package/dist/compliance/protocol-enforcement.js.map +0 -1
  303. package/dist/compliance/protocol-rules.js +0 -786
  304. package/dist/compliance/protocol-rules.js.map +0 -1
  305. package/dist/compliance/protocol-types.js +0 -80
  306. package/dist/compliance/protocol-types.js.map +0 -1
  307. package/dist/compliance/store.js +0 -53
  308. package/dist/compliance/store.js.map +0 -1
  309. package/dist/conduit/conduit-client.js +0 -94
  310. package/dist/conduit/conduit-client.js.map +0 -1
  311. package/dist/conduit/factory.js +0 -35
  312. package/dist/conduit/factory.js.map +0 -1
  313. package/dist/conduit/http-transport.js +0 -165
  314. package/dist/conduit/http-transport.js.map +0 -1
  315. package/dist/conduit/index.js +0 -12
  316. package/dist/conduit/index.js.map +0 -1
  317. package/dist/config/build-config.js +0 -29
  318. package/dist/config/build-config.js.map +0 -1
  319. package/dist/config.js +0 -401
  320. package/dist/config.js.map +0 -1
  321. package/dist/constants.js +0 -18
  322. package/dist/constants.js.map +0 -1
  323. package/dist/context/index.js +0 -137
  324. package/dist/context/index.js.map +0 -1
  325. package/dist/crypto/credentials.js +0 -144
  326. package/dist/crypto/credentials.js.map +0 -1
  327. package/dist/engine-result.js +0 -12
  328. package/dist/engine-result.js.map +0 -1
  329. package/dist/error-catalog.js +0 -404
  330. package/dist/error-catalog.js.map +0 -1
  331. package/dist/error-registry.js +0 -393
  332. package/dist/error-registry.js.map +0 -1
  333. package/dist/errors.js +0 -167
  334. package/dist/errors.js.map +0 -1
  335. package/dist/hooks/handlers/agent-hooks.js +0 -106
  336. package/dist/hooks/handlers/agent-hooks.js.map +0 -1
  337. package/dist/hooks/handlers/context-hooks.js +0 -111
  338. package/dist/hooks/handlers/context-hooks.js.map +0 -1
  339. package/dist/hooks/handlers/error-hooks.js +0 -52
  340. package/dist/hooks/handlers/error-hooks.js.map +0 -1
  341. package/dist/hooks/handlers/file-hooks.js +0 -104
  342. package/dist/hooks/handlers/file-hooks.js.map +0 -1
  343. package/dist/hooks/handlers/handler-helpers.js +0 -61
  344. package/dist/hooks/handlers/handler-helpers.js.map +0 -1
  345. package/dist/hooks/handlers/index.js +0 -28
  346. package/dist/hooks/handlers/index.js.map +0 -1
  347. package/dist/hooks/handlers/mcp-hooks.d.ts +0 -48
  348. package/dist/hooks/handlers/mcp-hooks.d.ts.map +0 -1
  349. package/dist/hooks/handlers/mcp-hooks.js +0 -147
  350. package/dist/hooks/handlers/mcp-hooks.js.map +0 -1
  351. package/dist/hooks/handlers/memory-bridge-refresh.js +0 -42
  352. package/dist/hooks/handlers/memory-bridge-refresh.js.map +0 -1
  353. package/dist/hooks/handlers/session-hooks.js +0 -104
  354. package/dist/hooks/handlers/session-hooks.js.map +0 -1
  355. package/dist/hooks/handlers/task-hooks.js +0 -65
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package/src/hooks/handlers/__tests__/hook-automation-e2e.test.ts CHANGED
@@ -38,8 +38,8 @@ import * as configModule from '../../../config.js';
38
38
  import * as brainRetrieval from '../../../memory/brain-retrieval.js';
39
39
  import { handleSubagentStart, handleSubagentStop } from '../agent-hooks.js';
40
40
  import { handlePostCompact, handlePreCompact } from '../context-hooks.js';
41
- import { handleSystemNotification } from '../mcp-hooks.js';
42
41
  import * as bridgeRefresh from '../memory-bridge-refresh.js';
42
+ import { handleSystemNotification } from '../notification-hooks.js';
43
43
  import { handleSessionEnd, handleSessionStart } from '../session-hooks.js';
44
44
  import { handleToolComplete, handleToolStart } from '../task-hooks.js';
45
45
  import { handleWorkPromptSubmit, handleWorkResponseComplete } from '../work-capture-hooks.js';
@@ -62,7 +62,7 @@ function makeConfig(
62
62
  captureMcp?: boolean;
63
63
  autoRefresh?: boolean;
64
64
  } = {},
65
- ): Record<string, unknown> {
65
+ ): Awaited<ReturnType<typeof configModule.loadConfig>> {
66
66
  return {
67
67
  brain: {
68
68
  autoCapture: overrides.autoCapture ?? true,
@@ -73,7 +73,7 @@ function makeConfig(
73
73
  embedding: { enabled: false, provider: 'local' },
74
74
  summarization: { enabled: false },
75
75
  },
76
- };
76
+ } as Awaited<ReturnType<typeof configModule.loadConfig>>;
77
77
  }
78
78
 
79
79
  const PROJECT_ROOT = '/tmp/e2e-test-project';
@@ -85,7 +85,9 @@ const TIMESTAMP = '2026-03-24T00:00:00.000Z';
85
85
 
86
86
  describe('hook automation E2E', () => {
87
87
  beforeEach(() => {
88
- observeBrainMock.mockReset().mockResolvedValue(undefined);
88
+ observeBrainMock
89
+ .mockReset()
90
+ .mockResolvedValue({ id: 'O-test', type: 'observation', createdAt: '2026-01-01 00:00:00' });
89
91
  loadConfigMock.mockReset().mockResolvedValue(makeConfig());
90
92
  maybeRefreshMemoryBridgeMock.mockReset().mockResolvedValue(undefined);
91
93
  // Clear work-capture env var
package/src/hooks/handlers/index.ts CHANGED
@@ -13,7 +13,7 @@ import './session-hooks.js';
13
13
  import './task-hooks.js';
14
14
  import './error-hooks.js';
15
15
  import './file-hooks.js';
16
- import './mcp-hooks.js';
16
+ import './notification-hooks.js';
17
17
  import './work-capture-hooks.js';
18
18
  import './agent-hooks.js';
19
19
  import './context-hooks.js';
@@ -22,11 +22,7 @@ export { handleSubagentStart, handleSubagentStop } from './agent-hooks.js';
22
22
  export { handlePostCompact, handlePreCompact } from './context-hooks.js';
23
23
  export { handleError } from './error-hooks.js';
24
24
  export { handleFileChange } from './file-hooks.js';
25
- export {
26
- handlePromptSubmit,
27
- handleResponseComplete,
28
- handleSystemNotification,
29
- } from './mcp-hooks.js';
25
+ export { handleSystemNotification } from './notification-hooks.js';
30
26
  // Re-export handler functions for explicit use
31
27
  export { handleSessionEnd, handleSessionStart } from './session-hooks.js';
32
28
  export { handleToolComplete, handleToolStart } from './task-hooks.js';
package/src/hooks/handlers/notification-hooks.ts ADDED
@@ -0,0 +1,65 @@
1
+ /**
2
+ * System Notification Hook Handler
3
+ *
4
+ * Captures message-bearing system notifications as BRAIN observations.
5
+ * File-change notifications (filePath + changeType) are handled by
6
+ * file-hooks.ts; this module only handles Notification payloads with
7
+ * a `message` field.
8
+ *
9
+ * Gated behind brain.autoCapture config. Never throws.
10
+ * Auto-registers on module load.
11
+ *
12
+ * @task T166
13
+ */
14
+
15
+ import { hooks } from '../registry.js';
16
+ import type { NotificationPayload } from '../types.js';
17
+ import { isAutoCaptureEnabled, isMissingBrainSchemaError } from './handler-helpers.js';
18
+
19
+ /**
20
+ * Handle Notification — capture system notifications as BRAIN observations.
21
+ *
22
+ * Only fires for Notification payloads that carry a message field (i.e. system
23
+ * notifications). File-change notifications (filePath + changeType) are
24
+ * handled exclusively by file-hooks.ts and are skipped here to avoid
25
+ * double-capture.
26
+ *
27
+ * Gated behind brain.autoCapture config. Never throws.
28
+ *
29
+ * @param projectRoot - Absolute path to the project root directory.
30
+ * @param payload - Notification event payload.
31
+ *
32
+ * @task T166
33
+ */
34
+ export async function handleSystemNotification(
35
+ projectRoot: string,
36
+ payload: NotificationPayload,
37
+ ): Promise<void> {
38
+ // File-change notifications are handled by file-hooks.ts
39
+ if (payload.filePath || payload.changeType) return;
40
+ // Only handle message-bearing system notifications
41
+ if (!payload.message) return;
42
+ if (!(await isAutoCaptureEnabled(projectRoot))) return;
43
+
44
+ const { observeBrain } = await import('../../memory/brain-retrieval.js');
45
+
46
+ try {
47
+ await observeBrain(projectRoot, {
48
+ text: `System notification: ${payload.message}`,
49
+ title: `Notification: ${payload.message.slice(0, 60)}`,
50
+ type: 'discovery',
51
+ sourceSessionId: payload.sessionId,
52
+ sourceType: 'agent',
53
+ });
54
+ } catch (err) {
55
+ if (!isMissingBrainSchemaError(err)) throw err;
56
+ }
57
+ }
58
+
59
+ // Lower priority (90) so file-hooks.ts (100) runs first for Notification events
60
+ hooks.register({
61
+ id: 'brain-system-notification',
62
+ event: 'Notification',
63
+ handler: handleSystemNotification,
64
+ priority: 90,
65
+ });
package/src/index.ts CHANGED
@@ -44,7 +44,7 @@ export * as intelligence from './intelligence/index.js';
44
44
  export * as issue from './issue/index.js';
45
45
  export * as lib from './lib/index.js';
46
46
  export * as lifecycle from './lifecycle/index.js';
47
- export * as coreMcp from './mcp/index.js';
47
+ // (removed: former coreMcp export — Phase 2 production readiness)
48
48
  export * as memory from './memory/index.js';
49
49
  export * as metrics from './metrics/index.js';
50
50
  export * as migration from './migration/index.js';
package/src/init.ts CHANGED
@@ -1,8 +1,8 @@
1
1
  /**
2
2
  * Core init logic - project initialization and maintenance.
3
3
  *
4
- * Single source of truth for all init operations. Both CLI and MCP
5
- * delegate here (shared-core pattern).
4
+ * Single source of truth for all init operations. CLI delegates here
5
+ * (shared-core pattern).
6
6
  *
7
7
  * Handles:
8
8
  * 1. .cleo/ directory structure creation
@@ -11,7 +11,7 @@
11
11
  * 4. Sequence counter (SQLite schema_meta)
12
12
  * 5. Project info (.cleo/project-info.json)
13
13
  * 6. CAAMP injection into agent instruction files (AGENTS.md hub pattern)
14
- * 7. MCP server installation to detected providers
14
+ * 7. (removed — was MCP server installation)
15
15
  * 8. Agent definition installation (cleo-subagent)
16
16
  * 9. Core skill installation via CAAMP
17
17
  * 10. NEXUS project registration
@@ -169,55 +169,15 @@ export async function initAgentDefinition(created: string[], warnings: string[])
169
169
  }
170
170
 
171
171
  /**
172
- * Install MCP server config to all detected providers via CAAMP.
172
+ * No-op. Kept for API compatibility.
173
173
  * @task T4706
174
174
  */
175
175
  export async function initMcpServer(
176
- projectRoot: string,
177
- created: string[],
178
- warnings: string[],
176
+ _projectRoot: string,
177
+ _created: string[],
178
+ _warnings: string[],
179
179
  ): Promise<void> {
180
- try {
181
- const { detectEnvMode, generateMcpServerEntry, getMcpServerName } = await import(
182
- './mcp/index.js'
183
- );
184
- const { getInstalledProviders, installMcpServerToAll } = await import('@cleocode/caamp');
185
- type McpServerConfig = import('@cleocode/caamp').McpServerConfig;
186
-
187
- const env = detectEnvMode();
188
- const serverEntry = generateMcpServerEntry(env) as McpServerConfig;
189
- const serverName = getMcpServerName(env);
190
- const providers = getInstalledProviders();
191
-
192
- if (providers.length === 0) {
193
- return;
194
- }
195
-
196
- // MCP server config is a system-level tool setup by default.
197
- // Project-level CLEO data still lives in per-project .cleo/.
198
- const results = await installMcpServerToAll(
199
- providers,
200
- serverName,
201
- serverEntry,
202
- 'global',
203
- projectRoot,
204
- );
205
-
206
- const successes = results.filter((r) => r.success);
207
- const failures = results.filter((r) => !r.success);
208
-
209
- if (successes.length > 0) {
210
- created.push(`MCP server: ${successes.map((r) => r.provider.id).join(', ')}`);
211
- }
212
-
213
- for (const f of failures) {
214
- if (f.error) {
215
- warnings.push(`MCP install to ${f.provider.id}: ${f.error}`);
216
- }
217
- }
218
- } catch (err) {
219
- warnings.push(`MCP server install: ${err instanceof Error ? err.message : String(err)}`);
220
- }
180
+ // No-op: removed
221
181
  }
222
182
 
223
183
  /**
@@ -464,7 +424,7 @@ export async function updateDocs(): Promise<InitResult> {
464
424
  * Run full project initialization.
465
425
  *
466
426
  * Creates the .cleo/ directory structure, installs schemas, templates,
467
- * agent definitions, MCP server configs, skills, and registers with NEXUS.
427
+ * agent definitions, skills, and registers with NEXUS.
468
428
  *
469
429
  * @task T4681
470
430
  * @task T4682
@@ -694,15 +654,15 @@ export async function initProject(opts: InitOptions = {}): Promise<InitResult> {
694
654
  warnings.push(`CAAMP injection: ${err instanceof Error ? err.message : String(err)}`);
695
655
  }
696
656
 
697
- // ADR-029: Contributor project MCP registration
657
+ // ADR-029: Contributor project dev channel setup
698
658
  try {
699
659
  const { ensureContributorMcp } = await import('./scaffold.js');
700
- const mcpResult = await ensureContributorMcp(projRoot);
701
- if (mcpResult.action !== 'skipped') {
702
- created.push(`contributor MCP: ${mcpResult.details ?? mcpResult.action}`);
660
+ const devResult = await ensureContributorMcp(projRoot);
661
+ if (devResult.action !== 'skipped') {
662
+ created.push(`contributor dev channel: ${devResult.details ?? devResult.action}`);
703
663
  }
704
664
  } catch (err) {
705
- warnings.push(`Contributor MCP setup: ${err instanceof Error ? err.message : String(err)}`);
665
+ warnings.push(`Contributor dev channel: ${err instanceof Error ? err.message : String(err)}`);
706
666
  }
707
667
 
708
668
  // T4685: Agent definition (cleo-subagent)
package/src/injection.ts CHANGED
@@ -336,9 +336,10 @@ export function checkInjection(projectRoot: string): InjectionCheckResult {
336
336
 
337
337
  for (const ref of refs) {
338
338
  const rawPath = ref.slice(1).trim();
339
- const resolvedPath = rawPath.startsWith('~/')
340
- ? join(homedir(), rawPath.slice(2))
341
- : join(projectRoot, rawPath);
339
+ const resolvedPath =
340
+ rawPath.startsWith('~/') || rawPath.startsWith('~\\')
341
+ ? join(homedir(), rawPath.slice(2))
342
+ : join(projectRoot, rawPath);
342
343
 
343
344
  if (!existsSync(resolvedPath)) {
344
345
  missing.push(rawPath);
package/src/internal.ts CHANGED
@@ -3,7 +3,7 @@
3
3
  *
4
4
  * This entry point is a SUPERSET of the public API. It re-exports everything
5
5
  * from `@cleocode/core` plus additional symbols needed by the dispatch layer,
6
- * CLI commands, MCP gateways, and engine adapters inside @cleocode/cleo.
6
+ * CLI commands, and engine adapters inside @cleocode/cleo.
7
7
  *
8
8
  * External consumers should import from `@cleocode/core` (the public API).
9
9
  * Only @cleocode/cleo should import from `@cleocode/core/internal`.
@@ -40,13 +40,12 @@ export type { BootstrapContext, BootstrapOptions } from './bootstrap.js';
40
40
  // Bootstrap (global setup)
41
41
  export {
42
42
  bootstrapGlobalCleo,
43
- installMcpToProviders,
44
43
  installSkillsGlobally,
45
44
  } from './bootstrap.js';
46
45
  export { smartOutline } from './code/outline.js';
47
46
  // Code analysis (Smart Explore)
48
- export { batchParse, parseFile } from './code/parser.js';
49
- export { smartSearch } from './code/search.js';
47
+ export { batchParse, isTreeSitterAvailable, parseFile } from './code/parser.js';
48
+ export { type SmartSearchOptions, smartSearch } from './code/search.js';
50
49
  export { smartUnfold } from './code/unfold.js';
51
50
  export type { ViolationLogEntry } from './compliance/protocol-enforcement.js';
52
51
  // Compliance
@@ -137,9 +136,6 @@ export {
137
136
  skipStageWithReason,
138
137
  } from './lifecycle/index.js';
139
138
  export { instantiateTessera, showTessera } from './lifecycle/tessera-engine.js';
140
-
141
- // MCP helpers
142
- export { detectEnvMode, generateMcpServerEntry, getMcpServerName } from './mcp/index.js';
143
139
  // Memory — brain lifecycle (temporal decay + consolidation)
144
140
  export type { ConsolidationResult, DecayResult } from './memory/brain-lifecycle.js';
145
141
  export { applyTemporalDecay, consolidateMemories } from './memory/brain-lifecycle.js';
@@ -187,7 +183,6 @@ export {
187
183
  memoryTimeline,
188
184
  memoryUnlink,
189
185
  } from './memory/engine-compat.js';
190
-
191
186
  // Memory — pipeline manifests
192
187
  export {
193
188
  pipelineManifestAppend,
@@ -199,7 +194,6 @@ export {
199
194
  pipelineManifestStats,
200
195
  readManifestEntries,
201
196
  } from './memory/pipeline-manifest-sqlite.js';
202
-
203
197
  // Metrics
204
198
  export {
205
199
  autoRecordDispatchTokenUsage,
@@ -480,6 +474,10 @@ export { getCriticalPath } from './tasks/graph-ops.js';
480
474
  export type { TaskTreeNode } from './tasks/hierarchy.js';
481
475
  export type { CompactTask } from './tasks/list.js';
482
476
  export { toCompact } from './tasks/list.js';
477
+ export {
478
+ getPipelineStageOrder,
479
+ isPipelineTransitionForward,
480
+ } from './tasks/pipeline-stage.js';
483
481
  export { discoverRelated } from './tasks/relates.js';
484
482
  export type { ComplexityFactor, FlatTreeNode } from './tasks/task-ops.js';
485
483
  export {
package/src/logger.ts CHANGED
@@ -5,8 +5,8 @@
5
5
  * Custom formatters for uppercase level labels and ISO timestamps.
6
6
  * Context via child loggers (getLogger('subsystem')).
7
7
  *
8
- * MCP safety: all diagnostic logging goes to files — stdout is reserved
9
- * for the MCP protocol. Fallback stderr logger if not yet initialized.
8
+ * All diagnostic logging goes to files — stdout is reserved for structured
9
+ * CLI output. Fallback stderr logger if not yet initialized.
10
10
  */
11
11
 
12
12
  import { existsSync } from 'node:fs';
@@ -59,7 +59,7 @@ export function initLogger(
59
59
  // transport has mkdir: true as a safety net for edge cases where the
60
60
  // logger is initialized before scaffold (e.g. early startup fallback).
61
61
  if (!existsSync(currentLogDir)) {
62
- // Emit to stderr — safe for MCP (protocol is stdout only)
62
+ // Emit to stderr — stdout is reserved for structured output
63
63
  process.stderr.write(
64
64
  `[cleo:logger] Log directory missing: ${currentLogDir} — pino-roll will create it\n`,
65
65
  );
@@ -122,11 +122,11 @@ export function initLogger(
122
122
  * Safe to call before initLogger — returns a stderr fallback logger
123
123
  * so early startup code and tests never crash.
124
124
  *
125
- * @param subsystem - Logical subsystem name (e.g. 'audit', 'mcp', 'migration')
125
+ * @param subsystem - Logical subsystem name (e.g. 'audit', 'dispatch', 'migration')
126
126
  */
127
127
  export function getLogger(subsystem: string): pino.Logger {
128
128
  if (!rootLogger) {
129
- // Fallback: stderr logger (safe for MCP — protocol is stdout)
129
+ // Fallback: stderr logger (stdout reserved for structured output)
130
130
  return pino(
131
131
  {
132
132
  level: 'warn',
package/src/memory/__tests__/brain-links.test.js CHANGED
@@ -16,10 +16,23 @@ describe('Brain Memory Links', () => {
16
16
  cleoDir = join(tempDir, '.cleo');
17
17
  await mkdir(cleoDir, { recursive: true });
18
18
  process.env['CLEO_DIR'] = cleoDir;
19
+ // Initialize tasks.db with test task IDs for cross-db write-guard validation
20
+ const { getDb } = await import('../../store/sqlite.js');
21
+ const { tasks } = await import('../../store/tasks-schema.js');
22
+ const db = await getDb(tempDir);
23
+ for (const id of ['T1000', 'T2000', 'T9999']) {
24
+ await db
25
+ .insert(tasks)
26
+ .values({ id, title: `Test task ${id}`, status: 'pending', type: 'task', position: 0 })
27
+ .onConflictDoNothing()
28
+ .run();
29
+ }
19
30
  });
20
31
  afterEach(async () => {
21
32
  const { closeBrainDb } = await import('../../store/brain-sqlite.js');
33
+ const { resetDbState } = await import('../../store/sqlite.js');
22
34
  closeBrainDb();
35
+ resetDbState();
23
36
  delete process.env['CLEO_DIR'];
24
37
  await rm(tempDir, { recursive: true, force: true });
25
38
  });
package/src/memory/__tests__/brain-links.test.js.map CHANGED
@@ -1 +1 @@
1
- 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package/src/memory/__tests__/brain-retrieval.test.js CHANGED
@@ -18,6 +18,15 @@ describe('Brain Retrieval', () => {
18
18
  cleoDir = join(tempDir, '.cleo');
19
19
  await mkdir(cleoDir, { recursive: true });
20
20
  process.env['CLEO_DIR'] = cleoDir;
21
+ // Initialize tasks.db with test session for cross-db write-guard validation
22
+ const { getDb } = await import('../../store/sqlite.js');
23
+ const { sessions } = await import('../../store/tasks-schema.js');
24
+ const db = await getDb(tempDir);
25
+ await db
26
+ .insert(sessions)
27
+ .values({ id: 'S-123', name: 'test-session', status: 'active' })
28
+ .onConflictDoNothing()
29
+ .run();
21
30
  });
22
31
  afterEach(async () => {
23
32
  try {