@cleocode/core 2026.4.0 → 2026.4.3

package/dist/store/json.js.map

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package/dist/store/lifecycle-store.js

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-/**
- * SQLite-backed lifecycle store operations.
- *
- * Query and mutation functions for lifecycle pipeline tables:
- * lifecycle_pipelines, lifecycle_stages, lifecycle_gate_results,
- * lifecycle_evidence, lifecycle_transitions.
- *
- * Used by src/core/lifecycle/resume.ts to avoid direct store-layer imports.
- *
- * @task T4832
- * @epic T4454
- */
-import { and, asc, desc, eq, inArray, sql } from 'drizzle-orm';
-import { getDb } from './sqlite.js';
-import * as schema from './tasks-schema.js';
-// =============================================================================
-// PIPELINE QUERIES
-// =============================================================================
-/**
- * Find active pipelines joined with their stages and tasks.
- * Optionally filters by specific task IDs.
- *
- * @param taskIds - Optional list of task IDs to filter by
- * @param cwd - Working directory for database
- * @returns Rows with pipeline, stage, and task data
- */
-export async function findActivePipelinesWithStagesAndTasks(taskIds, cwd) {
-    const db = await getDb(cwd);
-    const conditions = [eq(schema.lifecyclePipelines.status, 'active')];
-    if (taskIds && taskIds.length > 0) {
-        conditions.push(inArray(schema.lifecyclePipelines.taskId, taskIds));
-    }
-    return db
-        .select({
-        pipeline: schema.lifecyclePipelines,
-        stage: schema.lifecycleStages,
-        task: schema.tasks,
-    })
-        .from(schema.lifecyclePipelines)
-        .innerJoin(schema.lifecycleStages, eq(schema.lifecycleStages.pipelineId, schema.lifecyclePipelines.id))
-        .innerJoin(schema.tasks, eq(schema.tasks.id, schema.lifecyclePipelines.taskId))
-        .where(and(...conditions))
-        .orderBy(asc(schema.tasks.priority), desc(schema.lifecyclePipelines.startedAt))
-        .all();
-}
-/**
- * Find a pipeline with its current stage and task by taskId.
- * Matches stages where stageName equals the pipeline's currentStageId.
- *
- * @param taskId - Task ID to look up
- * @param cwd - Working directory for database
- * @returns Matching rows (typically 0 or 1)
- */
-export async function findPipelineWithCurrentStageAndTask(taskId, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select({
-        pipeline: schema.lifecyclePipelines,
-        stage: schema.lifecycleStages,
-        task: schema.tasks,
-    })
-        .from(schema.lifecyclePipelines)
-        .innerJoin(schema.lifecycleStages, eq(schema.lifecycleStages.pipelineId, schema.lifecyclePipelines.id))
-        .innerJoin(schema.tasks, eq(schema.tasks.id, schema.lifecyclePipelines.taskId))
-        .where(and(eq(schema.lifecyclePipelines.taskId, taskId), eq(schema.lifecycleStages.stageName, sql `${schema.lifecyclePipelines.currentStageId}`)))
-        .limit(1)
-        .all();
-}
-/**
- * Find a pipeline and a specific stage by taskId and stageName.
- *
- * @param taskId - Task ID
- * @param stageName - Stage name to match
- * @param cwd - Working directory for database
- * @returns Matching rows (typically 0 or 1)
- */
-export async function findPipelineWithStage(taskId, stageName, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select({
-        pipeline: schema.lifecyclePipelines,
-        stageRecord: schema.lifecycleStages,
-    })
-        .from(schema.lifecyclePipelines)
-        .innerJoin(schema.lifecycleStages, and(eq(schema.lifecycleStages.pipelineId, schema.lifecyclePipelines.id), eq(schema.lifecycleStages.stageName, stageName)))
-        .where(eq(schema.lifecyclePipelines.taskId, taskId))
-        .limit(1)
-        .all();
-}
-/**
- * Update pipeline's currentStageId.
- *
- * @param pipelineId - Pipeline ID to update
- * @param currentStageId - New current stage identifier
- * @param cwd - Working directory for database
- */
-export async function updatePipelineCurrentStage(pipelineId, currentStageId, cwd) {
-    const db = await getDb(cwd);
-    await db
-        .update(schema.lifecyclePipelines)
-        .set({ currentStageId })
-        .where(eq(schema.lifecyclePipelines.id, pipelineId))
-        .run();
-}
-// =============================================================================
-// STAGE QUERIES
-// =============================================================================
-/**
- * Get all stages for a pipeline, ordered by sequence.
- *
- * @param pipelineId - Pipeline ID
- * @param cwd - Working directory for database
- * @returns All stage rows for the pipeline
- */
-export async function getStagesByPipelineId(pipelineId, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select()
-        .from(schema.lifecycleStages)
-        .where(eq(schema.lifecycleStages.pipelineId, pipelineId))
-        .orderBy(asc(schema.lifecycleStages.sequence))
-        .all();
-}
-/**
- * Update a stage's status to 'in_progress' and clear block fields.
- *
- * @param stageId - Stage ID to update
- * @param startedAt - ISO timestamp for when the stage started
- * @param cwd - Working directory for database
- */
-export async function activateStage(stageId, startedAt, cwd) {
-    const db = await getDb(cwd);
-    await db
-        .update(schema.lifecycleStages)
-        .set({
-        status: 'in_progress',
-        startedAt,
-        blockedAt: null,
-        blockReason: null,
-    })
-        .where(eq(schema.lifecycleStages.id, stageId))
-        .run();
-}
-/**
- * Find pipeline with current stage (no task join) by taskId.
- * Used by checkBlockedStageDetails.
- *
- * @param taskId - Task ID
- * @param cwd - Working directory for database
- * @returns Matching rows
- */
-export async function findPipelineWithCurrentStage(taskId, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select({
-        pipeline: schema.lifecyclePipelines,
-        stageRecord: schema.lifecycleStages,
-    })
-        .from(schema.lifecyclePipelines)
-        .innerJoin(schema.lifecycleStages, eq(schema.lifecycleStages.pipelineId, schema.lifecyclePipelines.id))
-        .where(and(eq(schema.lifecyclePipelines.taskId, taskId), eq(schema.lifecycleStages.stageName, sql `${schema.lifecyclePipelines.currentStageId}`)))
-        .limit(1)
-        .all();
-}
-// =============================================================================
-// GATE RESULT QUERIES
-// =============================================================================
-/**
- * Get gate results for a stage, ordered by checkedAt descending.
- *
- * @param stageId - Stage ID
- * @param cwd - Working directory for database
- * @returns Gate result rows
- */
-export async function getGateResultsByStageId(stageId, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select()
-        .from(schema.lifecycleGateResults)
-        .where(eq(schema.lifecycleGateResults.stageId, stageId))
-        .orderBy(desc(schema.lifecycleGateResults.checkedAt))
-        .all();
-}
-/**
- * Get gate results for a stage without ordering (for simple checks).
- *
- * @param stageId - Stage ID
- * @param cwd - Working directory for database
- * @returns Gate result rows
- */
-export async function getGateResultsByStageIdUnordered(stageId, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select()
-        .from(schema.lifecycleGateResults)
-        .where(eq(schema.lifecycleGateResults.stageId, stageId))
-        .all();
-}
-// =============================================================================
-// EVIDENCE QUERIES
-// =============================================================================
-/**
- * Get evidence for a stage, ordered by recordedAt descending.
- *
- * @param stageId - Stage ID
- * @param cwd - Working directory for database
- * @returns Evidence rows
- */
-export async function getEvidenceByStageId(stageId, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select()
-        .from(schema.lifecycleEvidence)
-        .where(eq(schema.lifecycleEvidence.stageId, stageId))
-        .orderBy(desc(schema.lifecycleEvidence.recordedAt))
-        .all();
-}
-// =============================================================================
-// TRANSITION QUERIES & MUTATIONS
-// =============================================================================
-/**
- * Get recent transitions for a pipeline, ordered by createdAt descending.
- *
- * @param pipelineId - Pipeline ID
- * @param limit - Max rows to return (default: 10)
- * @param cwd - Working directory for database
- * @returns Transition rows
- */
-export async function getRecentTransitions(pipelineId, limit = 10, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select()
-        .from(schema.lifecycleTransitions)
-        .where(eq(schema.lifecycleTransitions.pipelineId, pipelineId))
-        .orderBy(desc(schema.lifecycleTransitions.createdAt))
-        .limit(limit)
-        .all();
-}
-/**
- * Insert a new transition record.
- *
- * @param transition - Transition data to insert
- * @param cwd - Working directory for database
- */
-export async function insertTransition(transition, cwd) {
-    const db = await getDb(cwd);
-    await db.insert(schema.lifecycleTransitions).values(transition).run();
-}
-//# sourceMappingURL=lifecycle-store.js.map

package/dist/store/lifecycle-store.js.map

@@ -1 +0,0 @@
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package/dist/store/lock.js

@@ -1,70 +0,0 @@
-/**
- * File locking using proper-lockfile.
- * Prevents concurrent modifications to CLEO data files.
- * @epic T4454
- * @task T4457
- */
-import { ExitCode } from '@cleocode/contracts';
-import lockfile from 'proper-lockfile';
-import { CleoError } from '../errors.js';
-/** Default lock options. */
-const DEFAULT_LOCK_OPTIONS = {
-    retries: {
-        retries: 3,
-        minTimeout: 100,
-        maxTimeout: 1000,
-        factor: 2,
-    },
-    stale: 10_000,
-    realpath: false,
-};
-/**
- * Acquire an exclusive lock on a file.
- * Returns a release function that must be called when done.
- */
-export async function acquireLock(filePath, options) {
-    try {
-        const release = await lockfile.lock(filePath, {
-            ...DEFAULT_LOCK_OPTIONS,
-            ...(options?.stale !== undefined && { stale: options.stale }),
-            ...(options?.retries !== undefined && {
-                retries: {
-                    ...DEFAULT_LOCK_OPTIONS.retries,
-                    retries: options.retries,
-                },
-            }),
-        });
-        return release;
-    }
-    catch (err) {
-        throw new CleoError(ExitCode.LOCK_TIMEOUT, `Failed to acquire lock: ${filePath}`, {
-            fix: `Another process may be writing to this file. Wait and retry.`,
-            cause: err,
-        });
-    }
-}
-/**
- * Check if a file is currently locked.
- */
-export async function isLocked(filePath) {
-    try {
-        return await lockfile.check(filePath, { realpath: false });
-    }
-    catch {
-        return false;
-    }
-}
-/**
- * Execute a function while holding an exclusive lock on a file.
- * The lock is automatically released when the function completes (or throws).
- */
-export async function withLock(filePath, fn, options) {
-    const release = await acquireLock(filePath, options);
-    try {
-        return await fn();
-    }
-    finally {
-        await release();
-    }
-}
-//# sourceMappingURL=lock.js.map

package/dist/store/lock.js.map

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package/dist/store/migration-manager.js

@@ -1,151 +0,0 @@
-/**
- * Unified migration manager for SQLite databases.
- *
- * Consolidates duplicated reconciliation, bootstrap, retry, and column-safety
- * logic that was previously copy-pasted between sqlite.ts (tasks.db) and
- * brain-sqlite.ts (brain.db). Both modules now delegate to these shared functions.
- *
- * @task T132
- * @see https://github.com/anthropics/cleo/issues/82
- * @see https://github.com/anthropics/cleo/issues/63
- * @see https://github.com/anthropics/cleo/issues/65
- */
-import { copyFileSync, existsSync } from 'node:fs';
-import { readMigrationFiles } from 'drizzle-orm/migrator';
-import { migrate } from 'drizzle-orm/node-sqlite/migrator';
-import { getLogger } from '../logger.js';
-/** Migration retry constants for SQLITE_BUSY handling (T5185). */
-const MAX_MIGRATION_RETRIES = 5;
-const MIGRATION_RETRY_BASE_DELAY_MS = 100;
-const MIGRATION_RETRY_MAX_DELAY_MS = 2000;
-/**
- * Check whether a table exists in a SQLite database.
- */
-export function tableExists(nativeDb, tableName) {
-    const result = nativeDb
-        .prepare("SELECT name FROM sqlite_master WHERE type='table' AND name=?")
-        .get(tableName);
-    return !!result;
-}
-/**
- * Check if an error is a SQLite BUSY error (database locked by another process).
- * node:sqlite throws native Error with message containing the SQLite error code.
- * @task T5185
- */
-export function isSqliteBusy(err) {
-    if (!(err instanceof Error))
-        return false;
-    const msg = err.message.toLowerCase();
-    return msg.includes('sqlite_busy') || msg.includes('database is locked');
-}
-/**
- * Create a pre-migration safety backup of the database file.
- *
- * Only creates the backup once (idempotent). Non-fatal on failure.
- */
-export function createSafetyBackup(dbPath) {
-    const backupPath = dbPath.replace(/\.db$/, '-pre-cleo.db.bak');
-    if (!existsSync(backupPath)) {
-        try {
-            copyFileSync(dbPath, backupPath);
-        }
-        catch {
-            /* non-fatal */
-        }
-    }
-}
-/**
- * Bootstrap and reconcile the Drizzle migration journal.
- *
- * Handles three scenarios:
- * 1. Tables exist but no __drizzle_migrations — bootstrap baseline as applied
- * 2. Journal has orphaned hashes (from older CLEO version) — clear and re-mark all as applied
- * 3. Journal is healthy — no-op
- *
- * @param nativeDb - Native SQLite database handle
- * @param migrationsFolder - Path to the drizzle migrations folder
- * @param existenceTable - A table name used to detect if the DB has data (e.g., 'tasks' or 'brain_decisions')
- * @param logSubsystem - Logger subsystem name for reconciliation warnings
- */
-export function reconcileJournal(nativeDb, migrationsFolder, existenceTable, logSubsystem) {
-    // Scenario 1: Tables exist but no migration journal — bootstrap baseline
-    if (tableExists(nativeDb, existenceTable) && !tableExists(nativeDb, '__drizzle_migrations')) {
-        const migrations = readMigrationFiles({ migrationsFolder });
-        const baseline = migrations[0];
-        if (baseline) {
-            nativeDb.exec(`
-        CREATE TABLE IF NOT EXISTS "__drizzle_migrations" (
-          id SERIAL PRIMARY KEY,
-          hash text NOT NULL,
-          created_at numeric
-        )
-      `);
-            nativeDb.exec(`INSERT INTO "__drizzle_migrations" ("hash", "created_at") VALUES ('${baseline.hash}', ${baseline.folderMillis})`);
-        }
-    }
-    // Scenario 2: Journal has orphaned entries from a previous CLEO version
-    if (tableExists(nativeDb, '__drizzle_migrations') && tableExists(nativeDb, existenceTable)) {
-        const localMigrations = readMigrationFiles({ migrationsFolder });
-        const localHashes = new Set(localMigrations.map((m) => m.hash));
-        const dbEntries = nativeDb.prepare('SELECT hash FROM "__drizzle_migrations"').all();
-        const hasOrphanedEntries = dbEntries.some((e) => !localHashes.has(e.hash));
-        if (hasOrphanedEntries) {
-            const log = getLogger(logSubsystem);
-            log.warn({ orphaned: dbEntries.filter((e) => !localHashes.has(e.hash)).length }, `Detected stale migration journal entries from a previous CLEO version. Reconciling.`);
-            nativeDb.exec('DELETE FROM "__drizzle_migrations"');
-            for (const m of localMigrations) {
-                nativeDb.exec(`INSERT INTO "__drizzle_migrations" ("hash", "created_at") VALUES ('${m.hash}', ${m.folderMillis})`);
-            }
-        }
-    }
-}
-/**
- * Run Drizzle migrations with SQLITE_BUSY retry and exponential backoff.
- *
- * @param db - Drizzle database instance
- * @param migrationsFolder - Path to the drizzle migrations folder
- */
-// biome-ignore lint/suspicious/noExplicitAny: Drizzle's NodeSQLiteDatabase is generic — accepting any schema avoids coupling to a specific schema type
-export function migrateWithRetry(db, migrationsFolder) {
-    for (let attempt = 1; attempt <= MAX_MIGRATION_RETRIES; attempt++) {
-        try {
-            migrate(db, { migrationsFolder });
-            return;
-        }
-        catch (err) {
-            if (!isSqliteBusy(err) || attempt === MAX_MIGRATION_RETRIES) {
-                throw err;
-            }
-            const delay = Math.min(MIGRATION_RETRY_BASE_DELAY_MS * 2 ** (attempt - 1) * (1 + Math.random() * 0.5), MIGRATION_RETRY_MAX_DELAY_MS);
-            Atomics.wait(new Int32Array(new SharedArrayBuffer(4)), 0, 0, Math.round(delay));
-        }
-    }
-}
-/**
- * Ensure all required columns exist on a table.
- *
- * Uses PRAGMA table_info to inspect the schema and adds any missing columns
- * via ALTER TABLE ADD COLUMN. Safety net for databases where Drizzle migrations
- * could not run due to journal corruption or version skew.
- *
- * @param nativeDb - Native SQLite database handle
- * @param tableName - Table to check (e.g., 'tasks')
- * @param requiredColumns - Columns that must exist
- * @param logSubsystem - Logger subsystem name
- */
-export function ensureColumns(nativeDb, tableName, requiredColumns, logSubsystem) {
-    if (!tableExists(nativeDb, tableName))
-        return;
-    if (requiredColumns.length === 0)
-        return;
-    const columns = nativeDb.prepare(`PRAGMA table_info(${tableName})`).all();
-    const existingCols = new Set(columns.map((c) => c.name));
-    for (const req of requiredColumns) {
-        if (!existingCols.has(req.name)) {
-            const log = getLogger(logSubsystem);
-            log.warn({ column: req.name }, `Adding missing column ${tableName}.${req.name} via ALTER TABLE`);
-            nativeDb.exec(`ALTER TABLE ${tableName} ADD COLUMN ${req.name} ${req.ddl}`);
-        }
-    }
-}
-//# sourceMappingURL=migration-manager.js.map

package/dist/store/migration-manager.js.map

@@ -1 +0,0 @@
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