@cleocode/core 2026.4.0 → 2026.4.3

package/dist/store/data-safety.js

@@ -1,274 +0,0 @@
-/**
- * Data Safety Module - Critical protection layer for CLEO data operations.
- *
- * Implements:
- * - Write verification (verify data was actually persisted)
- * - Collision detection (prevent duplicate task IDs)
- * - Sequence validation (ensure sequence counter matches database)
- * - Auto-checkpoint integration (git commit after writes)
- *
- * @task T4739
- * @epic T4732
- */
-import { eq } from 'drizzle-orm';
-import { getLogger } from '../logger.js';
-import { checkSequence, repairSequence } from '../sequence/index.js';
-import { gitCheckpoint } from './git-checkpoint.js';
-import { getDb } from './sqlite.js';
-import { vacuumIntoBackup } from './sqlite-backup.js';
-import * as schema from './tasks-schema.js';
-const log = getLogger('data-safety');
-const DEFAULT_CONFIG = {
-    verifyWrites: true,
-    detectCollisions: true,
-    validateSequence: true,
-    autoCheckpoint: true,
-    strictMode: true,
-};
-/** Safety violation error. */
-export class SafetyError extends Error {
-    code;
-    details;
-    constructor(message, code, details) {
-        super(message);
-        this.code = code;
-        this.details = details;
-        this.name = 'SafetyError';
-    }
-}
-/**
- * Check if a task ID already exists (collision detection).
- * @throws SafetyError if task exists and strict mode is enabled
- */
-export async function checkTaskExists(taskId, cwd, config = {}) {
-    const cfg = { ...DEFAULT_CONFIG, ...config };
-    if (!cfg.detectCollisions)
-        return false;
-    const db = await getDb(cwd);
-    const existing = await db.select().from(schema.tasks).where(eq(schema.tasks.id, taskId)).all();
-    const exists = existing.length > 0;
-    if (exists && cfg.strictMode) {
-        throw new SafetyError(`Task ID collision detected: ${taskId} already exists`, 'COLLISION_DETECTED', { taskId, existingTask: existing[0] });
-    }
-    return exists;
-}
-/**
- * Verify a task was actually written to the database.
- * @throws SafetyError if verification fails
- */
-export async function verifyTaskWrite(taskId, expectedData, cwd, config = {}) {
-    const cfg = { ...DEFAULT_CONFIG, ...config };
-    if (!cfg.verifyWrites)
-        return true;
-    const db = await getDb(cwd);
-    const rows = await db.select().from(schema.tasks).where(eq(schema.tasks.id, taskId)).all();
-    if (rows.length === 0) {
-        if (cfg.strictMode) {
-            throw new SafetyError(`Write verification failed: Task ${taskId} not found after write`, 'WRITE_VERIFICATION_FAILED', { taskId });
-        }
-        return false;
-    }
-    // Verify expected data if provided
-    if (expectedData) {
-        const row = rows[0];
-        for (const [key, value] of Object.entries(expectedData)) {
-            if (value !== undefined && row[key] !== value) {
-                if (cfg.strictMode) {
-                    throw new SafetyError(`Write verification failed: Task ${taskId} field ${key} mismatch`, 'WRITE_VERIFICATION_MISMATCH', { taskId, field: key, expected: value, actual: row[key] });
-                }
-                return false;
-            }
-        }
-    }
-    return true;
-}
-/**
- * Validate and repair sequence if necessary.
- * @returns true if sequence was valid or successfully repaired
- */
-export async function validateAndRepairSequence(cwd, config = {}) {
-    const cfg = { ...DEFAULT_CONFIG, ...config };
-    if (!cfg.validateSequence)
-        return { valid: true, repaired: false };
-    try {
-        const check = await checkSequence(cwd);
-        if (check.valid) {
-            return { valid: true, repaired: false };
-        }
-        // Sequence is behind, repair it
-        const repair = await repairSequence(cwd);
-        if (repair.repaired) {
-            log.warn({ oldCounter: repair.oldCounter, newCounter: repair.newCounter }, 'Sequence repaired');
-            return {
-                valid: true,
-                repaired: true,
-                oldCounter: repair.oldCounter,
-                newCounter: repair.newCounter,
-            };
-        }
-        // repairSequence returning repaired:false means "already valid, nothing to do"
-        return { valid: true, repaired: false };
-    }
-    catch (err) {
-        if (cfg.strictMode) {
-            throw new SafetyError(`Sequence validation failed: ${String(err)}`, 'SEQUENCE_VALIDATION_FAILED', { error: String(err) });
-        }
-        return { valid: false, repaired: false };
-    }
-}
-/**
- * Trigger auto-checkpoint after successful write.
- */
-export async function triggerCheckpoint(context, cwd, config = {}) {
-    const cfg = { ...DEFAULT_CONFIG, ...config };
-    if (!cfg.autoCheckpoint)
-        return;
-    try {
-        await gitCheckpoint('auto', context, cwd);
-    }
-    catch (err) {
-        // Checkpoint failures are non-fatal but should be logged
-        log.warn({ err }, 'Checkpoint failed (non-fatal)');
-    }
-    vacuumIntoBackup({ cwd }).catch(() => { }); // non-fatal SQLite snapshot
-}
-/**
- * Safely create a task with all safety mechanisms.
- * Wraps the actual createTask operation.
- */
-export async function safeCreateTask(createFn, task, cwd, config = {}) {
-    const cfg = { ...DEFAULT_CONFIG, ...config };
-    // 1. Validate sequence before creation
-    if (cfg.validateSequence) {
-        await validateAndRepairSequence(cwd, config);
-    }
-    // 2. Check for collisions
-    if (cfg.detectCollisions) {
-        await checkTaskExists(task.id, cwd, config);
-    }
-    // 3. Perform the actual creation
-    const result = await createFn();
-    // 4. Trigger checkpoint
-    if (cfg.autoCheckpoint) {
-        await triggerCheckpoint(`created ${task.id}`, cwd, config);
-    }
-    return result;
-}
-/**
- * Safely update a task with all safety mechanisms.
- */
-export async function safeUpdateTask(updateFn, taskId, _updates, cwd, config = {}) {
-    const cfg = { ...DEFAULT_CONFIG, ...config };
-    // 1. Perform the actual update
-    const result = await updateFn();
-    if (!result)
-        return null;
-    // 2. Trigger checkpoint
-    if (cfg.autoCheckpoint) {
-        await triggerCheckpoint(`updated ${taskId}`, cwd, config);
-    }
-    return result;
-}
-/**
- * Safely delete a task with all safety mechanisms.
- */
-export async function safeDeleteTask(deleteFn, taskId, cwd, config = {}) {
-    const cfg = { ...DEFAULT_CONFIG, ...config };
-    // 1. Perform the actual deletion
-    const result = await deleteFn();
-    if (!result)
-        return false;
-    // 2. Trigger checkpoint
-    if (cfg.autoCheckpoint) {
-        await triggerCheckpoint(`deleted ${taskId}`, cwd, config);
-    }
-    return result;
-}
-/**
- * Verify session write.
- */
-export async function verifySessionWrite(sessionId, cwd, config = {}) {
-    const cfg = { ...DEFAULT_CONFIG, ...config };
-    if (!cfg.verifyWrites)
-        return true;
-    const db = await getDb(cwd);
-    const rows = await db
-        .select()
-        .from(schema.sessions)
-        .where(eq(schema.sessions.id, sessionId))
-        .all();
-    if (rows.length === 0) {
-        if (cfg.strictMode) {
-            throw new SafetyError(`Write verification failed: Session ${sessionId} not found after write`, 'SESSION_WRITE_VERIFICATION_FAILED', { sessionId });
-        }
-        return false;
-    }
-    return true;
-}
-/**
- * Safely create a session with all safety mechanisms.
- */
-export async function safeCreateSession(createFn, session, cwd, config = {}) {
-    const cfg = { ...DEFAULT_CONFIG, ...config };
-    // 1. Perform the actual creation
-    const result = await createFn();
-    // 2. Verify the write
-    if (cfg.verifyWrites) {
-        await verifySessionWrite(session.id, cwd, config);
-    }
-    // 3. Trigger checkpoint
-    if (cfg.autoCheckpoint) {
-        await triggerCheckpoint(`session ${session.id} started`, cwd, config);
-    }
-    return result;
-}
-/**
- * Force a checkpoint before destructive operations.
- * Use this before migrations, bulk updates, etc.
- */
-export async function forceCheckpointBeforeOperation(operation, cwd) {
-    log.info({ operation }, 'Forcing checkpoint before operation');
-    try {
-        await gitCheckpoint('manual', `pre-${operation}`, cwd);
-    }
-    catch (err) {
-        log.error({ err }, 'Failed to create pre-operation checkpoint');
-        // Don't throw - checkpoint failures shouldn't block operations
-    }
-    vacuumIntoBackup({ cwd, force: true }).catch(() => { }); // non-fatal SQLite snapshot
-}
-/**
- * Run comprehensive data integrity check.
- * Reports all issues found.
- */
-export async function runDataIntegrityCheck(cwd) {
-    const issues = [];
-    const repairs = [];
-    // 1. Check sequence
-    try {
-        const seqCheck = await checkSequence(cwd);
-        if (!seqCheck.valid) {
-            issues.push(`Sequence invalid: counter ${seqCheck.counter} < max ID T${seqCheck.maxIdInData}`);
-            // Auto-repair
-            const repair = await repairSequence(cwd);
-            if (repair.repaired) {
-                repairs.push(`Sequence repaired: ${repair.oldCounter} -> ${repair.newCounter}`);
-            }
-            else {
-                issues.push('Sequence repair failed');
-            }
-        }
-    }
-    catch (err) {
-        issues.push(`Sequence check failed: ${String(err)}`);
-    }
-    // 2. Check for ghost entries (would need to compare structured audit log with database)
-    // This is a complex check that would require loading the entire log
-    // For now, we skip this but document it as needed
-    return {
-        passed: issues.length === repairs.length,
-        issues,
-        repairs,
-    };
-}
-//# sourceMappingURL=data-safety.js.map

package/dist/store/data-safety.js.map

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package/dist/store/db-helpers.js

@@ -1,224 +0,0 @@
-/**
- * Shared database helper functions for SQLite store modules.
- *
- * Consolidates upsert and dependency patterns used across
- * sqlite-data-accessor.ts, task-store.ts, and session-store.ts.
- *
- * @epic T4454
- */
-import { eq, inArray } from 'drizzle-orm';
-import * as schema from './tasks-schema.js';
-/**
- * Upsert a single task row into the tasks table.
- * Handles both active task upsert and archived task upsert via optional archiveFields.
- *
- * Defensively nulls out parentId if it references a non-existent task,
- * preventing orphaned FK violations from blocking bulk operations (T5034).
- */
-export async function upsertTask(db, row, archiveFields) {
-    // Defensive: null out parentId if it references a non-existent task (T5034)
-    if (row.parentId) {
-        const parent = await db
-            .select({ id: schema.tasks.id })
-            .from(schema.tasks)
-            .where(eq(schema.tasks.id, row.parentId))
-            .limit(1)
-            .all();
-        if (parent.length === 0) {
-            row = { ...row, parentId: null };
-        }
-    }
-    const values = archiveFields ? { ...row, ...archiveFields, status: 'archived' } : row;
-    const set = {
-        title: row.title,
-        description: row.description,
-        status: archiveFields ? 'archived' : row.status,
-        priority: row.priority,
-        type: row.type,
-        parentId: row.parentId,
-        phase: row.phase,
-        size: row.size,
-        position: row.position,
-        positionVersion: row.positionVersion,
-        labelsJson: row.labelsJson,
-        notesJson: row.notesJson,
-        acceptanceJson: row.acceptanceJson,
-        filesJson: row.filesJson,
-        origin: row.origin,
-        blockedBy: row.blockedBy,
-        epicLifecycle: row.epicLifecycle,
-        noAutoComplete: row.noAutoComplete,
-        createdAt: row.createdAt,
-        updatedAt: row.updatedAt,
-        completedAt: row.completedAt,
-        cancelledAt: row.cancelledAt,
-        cancellationReason: row.cancellationReason,
-        verificationJson: row.verificationJson,
-        createdBy: row.createdBy,
-        modifiedBy: row.modifiedBy,
-        sessionId: row.sessionId,
-        // T060: pipeline stage name (RCASD-IVTR+C)
-        pipelineStage: row.pipelineStage ?? null,
-        assignee: row.assignee ?? null,
-        // Always include archive metadata so unarchive clears stale values (T5034)
-        archivedAt: archiveFields?.archivedAt ?? null,
-        archiveReason: archiveFields?.archiveReason ?? null,
-        cycleTimeDays: archiveFields?.cycleTimeDays ?? null,
-    };
-    await db
-        .insert(schema.tasks)
-        .values(values)
-        .onConflictDoUpdate({ target: schema.tasks.id, set })
-        .run();
-}
-/**
- * Upsert a single session row into the sessions table.
- */
-export async function upsertSession(db, session) {
-    const sessionName = session.name || `session-${session.id}`;
-    const values = {
-        id: session.id,
-        name: sessionName,
-        status: session.status,
-        scopeJson: JSON.stringify(session.scope ?? { type: 'global' }),
-        currentTask: session.taskWork?.taskId ?? null,
-        taskStartedAt: session.taskWork?.setAt ?? null,
-        agent: session.agent ?? null,
-        notesJson: session.notes ? JSON.stringify(session.notes) : '[]',
-        tasksCompletedJson: session.tasksCompleted ? JSON.stringify(session.tasksCompleted) : '[]',
-        tasksCreatedJson: session.tasksCreated ? JSON.stringify(session.tasksCreated) : '[]',
-        handoffJson: session.handoffJson ?? null,
-        startedAt: session.startedAt,
-        endedAt: session.endedAt ?? null,
-        // Session chain fields (T4959)
-        previousSessionId: session.previousSessionId ?? null,
-        nextSessionId: session.nextSessionId ?? null,
-        agentIdentifier: session.agentIdentifier ?? null,
-        handoffConsumedAt: session.handoffConsumedAt ?? null,
-        handoffConsumedBy: session.handoffConsumedBy ?? null,
-        debriefJson: session.debriefJson ?? null,
-        // Session stats fields
-        statsJson: session.stats ? JSON.stringify(session.stats) : null,
-        resumeCount: session.resumeCount ?? null,
-        gradeMode: session.gradeMode ? 1 : null,
-    };
-    const { id: _id, ...setFields } = values;
-    await db
-        .insert(schema.sessions)
-        .values(values)
-        .onConflictDoUpdate({ target: schema.sessions.id, set: setFields })
-        .run();
-}
-/**
- * Update dependencies for a task: delete existing, then re-insert.
- * Optionally filters by a set of valid IDs.
- */
-export async function updateDependencies(db, taskId, depends, validIds) {
-    await db.delete(schema.taskDependencies).where(eq(schema.taskDependencies.taskId, taskId)).run();
-    for (const depId of depends) {
-        if (!validIds || validIds.has(depId)) {
-            await db
-                .insert(schema.taskDependencies)
-                .values({ taskId, dependsOn: depId })
-                .onConflictDoNothing()
-                .run();
-        }
-    }
-}
-/**
- * Batch-update dependencies for multiple tasks in two bulk SQL operations.
- * Replaces per-task updateDependencies() loops with:
- * 1. Single DELETE for all task IDs
- * 2. Single INSERT for all dependency rows
- *
- * Callers are responsible for wrapping this in a transaction if needed.
- */
-export async function batchUpdateDependencies(db, tasks, validIds) {
-    if (tasks.length === 0)
-        return;
-    const allTaskIds = tasks.map((t) => t.taskId);
-    // Single DELETE: remove all existing dependencies for these tasks
-    await db
-        .delete(schema.taskDependencies)
-        .where(inArray(schema.taskDependencies.taskId, allTaskIds))
-        .run();
-    // Collect all valid dependency rows
-    const allDepRows = [];
-    for (const { taskId, deps } of tasks) {
-        for (const depId of deps) {
-            if (!validIds || validIds.has(depId)) {
-                allDepRows.push({ taskId, dependsOn: depId });
-            }
-        }
-    }
-    // Single INSERT for all dependency rows
-    if (allDepRows.length > 0) {
-        await db.insert(schema.taskDependencies).values(allDepRows).onConflictDoNothing().run();
-    }
-}
-/**
- * Batch-load dependencies for a list of tasks and apply them in-place.
- * Uses inArray for efficient querying. Optionally filters by a set of valid IDs.
- */
-export async function loadDependenciesForTasks(db, tasks, validationIds) {
-    if (tasks.length === 0)
-        return;
-    const taskIds = tasks.map((t) => t.id);
-    const taskIdSet = validationIds ?? new Set(taskIds);
-    const allDeps = await db
-        .select()
-        .from(schema.taskDependencies)
-        .where(inArray(schema.taskDependencies.taskId, taskIds))
-        .all();
-    const depMap = new Map();
-    for (const dep of allDeps) {
-        if (taskIdSet.has(dep.dependsOn)) {
-            let arr = depMap.get(dep.taskId);
-            if (!arr) {
-                arr = [];
-                depMap.set(dep.taskId, arr);
-            }
-            arr.push(dep.dependsOn);
-        }
-    }
-    for (const task of tasks) {
-        const deps = depMap.get(task.id);
-        if (deps && deps.length > 0) {
-            task.depends = deps;
-        }
-    }
-}
-/**
- * Batch-load relations for a list of tasks and apply them in-place.
- * Mirrors loadDependenciesForTasks pattern for task_relations table (T5168).
- */
-export async function loadRelationsForTasks(db, tasks) {
-    if (tasks.length === 0)
-        return;
-    const taskIds = tasks.map((t) => t.id);
-    const allRels = await db
-        .select()
-        .from(schema.taskRelations)
-        .where(inArray(schema.taskRelations.taskId, taskIds))
-        .all();
-    const relMap = new Map();
-    for (const rel of allRels) {
-        let arr = relMap.get(rel.taskId);
-        if (!arr) {
-            arr = [];
-            relMap.set(rel.taskId, arr);
-        }
-        arr.push({
-            taskId: rel.relatedTo,
-            type: rel.relationType,
-            reason: rel.reason ?? undefined,
-        });
-    }
-    for (const task of tasks) {
-        const relations = relMap.get(task.id);
-        if (relations && relations.length > 0) {
-            task.relates = relations;
-        }
-    }
-}
-//# sourceMappingURL=db-helpers.js.map

package/dist/store/db-helpers.js.map

@@ -1 +0,0 @@
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package/dist/store/export.js

@@ -1,155 +0,0 @@
-/**
- * Export package generation for task data interchange.
- * Ported from lib/data/export.sh
- *
- * @epic T4454
- * @task T4530
- */
-import { createHash } from 'node:crypto';
-/** Export format version. */
-const EXPORT_FORMAT_VERSION = '1.0.0';
-/**
- * Calculate SHA-256 checksum for export integrity (truncated to 16 hex chars).
- */
-export function calculateExportChecksum(tasksJson) {
-    const canonical = JSON.stringify(JSON.parse(tasksJson));
-    return createHash('sha256').update(canonical).digest('hex').slice(0, 16);
-}
-/**
- * Verify export package checksum.
- */
-export function verifyExportChecksum(pkg) {
-    const tasksJson = JSON.stringify(pkg.tasks);
-    const calculated = calculateExportChecksum(tasksJson);
-    return pkg._meta.checksum === calculated;
-}
-/**
- * Build ID map from tasks.
- */
-export function buildIdMap(tasks) {
-    const map = {};
-    for (const task of tasks) {
-        map[task.id] = {
-            type: task.type ?? 'task',
-            title: task.title,
-            status: task.status,
-            parentId: task.parentId ?? null,
-            depends: task.depends ?? [],
-        };
-    }
-    return map;
-}
-/**
- * Build relationship graph from tasks.
- */
-export function buildRelationshipGraph(tasks) {
-    const exportedIds = new Set(tasks.map((t) => t.id));
-    const hierarchy = {};
-    const dependencies = {};
-    for (const task of tasks) {
-        // Hierarchy
-        if (task.parentId && exportedIds.has(task.parentId)) {
-            if (!hierarchy[task.parentId])
-                hierarchy[task.parentId] = [];
-            hierarchy[task.parentId].push(task.id);
-        }
-        // Dependencies
-        if (task.depends?.length) {
-            const internalDeps = task.depends.filter((d) => exportedIds.has(d));
-            if (internalDeps.length > 0) {
-                dependencies[task.id] = internalDeps;
-            }
-        }
-    }
-    // Roots: tasks with no parent in export and no deps in export
-    const roots = tasks
-        .filter((t) => {
-        const hasParentInExport = t.parentId && exportedIds.has(t.parentId);
-        const hasDepsInExport = t.depends?.some((d) => exportedIds.has(d));
-        return !hasParentInExport && !hasDepsInExport;
-    })
-        .map((t) => t.id);
-    return { hierarchy, dependencies, roots };
-}
-/**
- * Build a complete export package.
- */
-export function buildExportPackage(tasks, options) {
-    const now = new Date().toISOString();
-    const projectName = options.projectName ?? 'unknown';
-    const maxId = tasks.reduce((max, t) => {
-        const num = parseInt(t.id.replace('T', ''), 10);
-        return num > max ? num : max;
-    }, 0);
-    const idMap = buildIdMap(tasks);
-    const relationshipGraph = buildRelationshipGraph(tasks);
-    const tasksJson = JSON.stringify(tasks);
-    const checksum = calculateExportChecksum(tasksJson);
-    return {
-        $schema: 'https://cleo-dev.com/schemas/v1/export-package.schema.json',
-        _meta: {
-            format: 'cleo-export',
-            version: EXPORT_FORMAT_VERSION,
-            exportedAt: now,
-            source: {
-                project: projectName,
-                cleo_version: options.cleoVersion ?? '0.95.0',
-                nextId: maxId + 1,
-            },
-            checksum,
-            taskCount: tasks.length,
-            exportMode: options.mode,
-        },
-        selection: {
-            mode: options.mode,
-            rootTaskIds: options.rootTaskIds,
-            includeChildren: options.includeChildren,
-            filters: options.filters,
-        },
-        idMap,
-        tasks,
-        relationshipGraph,
-    };
-}
-/**
- * Export a single task.
- */
-export function exportSingle(taskId, allTasks, projectName) {
-    const task = allTasks.find((t) => t.id === taskId);
-    if (!task)
-        return null;
-    return buildExportPackage([task], {
-        mode: 'single',
-        rootTaskIds: [taskId],
-        includeChildren: false,
-        projectName,
-    });
-}
-/**
- * Export a subtree (task + all descendants).
- */
-export function exportSubtree(rootId, allTasks, projectName) {
-    const root = allTasks.find((t) => t.id === rootId);
-    if (!root)
-        return null;
-    // Collect all descendants via BFS
-    const collected = new Map();
-    const queue = [rootId];
-    while (queue.length > 0) {
-        const id = queue.shift();
-        const task = allTasks.find((t) => t.id === id);
-        if (!task || collected.has(id))
-            continue;
-        collected.set(id, task);
-        const children = allTasks.filter((t) => t.parentId === id);
-        queue.push(...children.map((c) => c.id));
-    }
-    const tasks = [...collected.values()];
-    return buildExportPackage(tasks, {
-        mode: 'subtree',
-        rootTaskIds: [rootId],
-        includeChildren: true,
-        projectName,
-    });
-}
-//# sourceMappingURL=export.js.map