@cleocode/cleo 2026.2.5

package/dist/core/release/version-bump.js

@@ -0,0 +1,251 @@
+/**
+ * Version bump - config-driven version bumping across project files.
+ *
+ * Reads release.versionBump from .cleo/config.json and updates all
+ * configured files with the new version. Supports strategies:
+ *   plain - Overwrite entire file (e.g., VERSION)
+ *   json  - Update a JSON field (e.g., package.json .version)
+ *   toml  - Update a TOML key (e.g., Cargo.toml)
+ *   sed   - Custom regex substitution
+ *
+ * @task T4454
+ * @epic T4454
+ */
+import { existsSync, readFileSync, writeFileSync } from 'node:fs';
+import { join } from 'node:path';
+import { getCleoDir, getProjectRoot } from '../paths.js';
+import { CleoError } from '../errors.js';
+import { ExitCode } from '../../types/exit-codes.js';
+/** Synchronous config value reader for version bump targets. */
+function readConfigValueSync(path, defaultValue, cwd) {
+    try {
+        const configPath = join(getCleoDir(cwd), 'config.json');
+        if (!existsSync(configPath))
+            return defaultValue;
+        const config = JSON.parse(readFileSync(configPath, 'utf-8'));
+        const keys = path.split('.');
+        let value = config;
+        for (const key of keys) {
+            if (value == null || typeof value !== 'object')
+                return defaultValue;
+            value = value[key];
+        }
+        return value ?? defaultValue;
+    }
+    catch {
+        return defaultValue;
+    }
+}
+/** Three-part version regex (X.Y.Z) - matches both semver and CalVer base format. */
+const THREE_PART_VERSION_REGEX = /^\d+\.\d+\.\d+$/;
+/** CalVer regex (YYYY.M.patch or YYYY.MM.patch, with optional pre-release suffix). */
+const CALVER_REGEX = /^\d{4}\.\d{1,2}\.\d+$/;
+/** Version with optional pre-release suffix (e.g., 2026.2.0-rc.1). */
+const VERSION_WITH_PRERELEASE = /^\d+\.\d+\.\d+(-[a-zA-Z0-9.]+)?$/;
+/** Validate version format (semver X.Y.Z or CalVer YYYY.M.patch, with optional pre-release). */
+export function validateVersionFormat(version) {
+    return VERSION_WITH_PRERELEASE.test(version);
+}
+/** Check if a version string is CalVer format. */
+export function isCalVer(version) {
+    const base = version.replace(/-.*$/, '');
+    return CALVER_REGEX.test(base) && parseInt(base.split('.')[0], 10) >= 2000;
+}
+/** Calculate new version from current + bump type. */
+export function calculateNewVersion(current, bump) {
+    // If bump is already a version, validate and return
+    if (VERSION_WITH_PRERELEASE.test(bump))
+        return bump;
+    // Strip pre-release suffix for base version parsing
+    const base = current.replace(/-.*$/, '');
+    if (!THREE_PART_VERSION_REGEX.test(base) && !CALVER_REGEX.test(base)) {
+        throw new CleoError(ExitCode.VALIDATION_ERROR, `Invalid current version: '${current}' (expected X.Y.Z or YYYY.M.patch)`);
+    }
+    const parts = base.split('.').map(Number);
+    if (isCalVer(current)) {
+        // CalVer: YYYY.MM.patch
+        const now = new Date();
+        const year = now.getFullYear();
+        const month = now.getMonth() + 1;
+        switch (bump) {
+            case 'patch':
+                // Same year+month: increment patch. Different: reset to 0.
+                if (parts[0] === year && parts[1] === month) {
+                    parts[2]++;
+                }
+                else {
+                    return `${year}.${month}.0`;
+                }
+                break;
+            case 'minor':
+            case 'major':
+                // CalVer doesn't have minor/major — just roll to current date
+                return `${year}.${month}.0`;
+            default:
+                throw new CleoError(ExitCode.VALIDATION_ERROR, `Invalid bump type: '${bump}'. Expected: patch, minor, major, or a version string`);
+        }
+    }
+    else {
+        // Semver: X.Y.Z
+        switch (bump) {
+            case 'patch':
+                parts[2]++;
+                break;
+            case 'minor':
+                parts[1]++;
+                parts[2] = 0;
+                break;
+            case 'major':
+                parts[0]++;
+                parts[1] = 0;
+                parts[2] = 0;
+                break;
+            default:
+                throw new CleoError(ExitCode.VALIDATION_ERROR, `Invalid bump type: '${bump}'. Expected: patch, minor, major, or X.Y.Z`);
+        }
+    }
+    return parts.join('.');
+}
+/** Get version bump configuration, mapping config field names to VersionBumpTarget. */
+export function getVersionBumpConfig(cwd) {
+    try {
+        const raw = readConfigValueSync('release.versionBump.files', [], cwd);
+        return raw.map(entry => ({
+            file: entry.path ?? entry.file ?? '',
+            strategy: entry.strategy,
+            field: entry.jsonPath?.replace(/^\./, '') ?? entry.field,
+            key: entry.key,
+            section: entry.section,
+            pattern: entry.sedPattern ?? entry.pattern,
+        })).filter(t => t.file !== '');
+    }
+    catch {
+        return [];
+    }
+}
+/** Check if version bump is configured. */
+export function isVersionBumpConfigured(cwd) {
+    return getVersionBumpConfig(cwd).length > 0;
+}
+/** Apply version bump to a single target file. */
+function bumpFile(target, newVersion, projectRoot) {
+    const filePath = join(projectRoot, target.file);
+    if (!existsSync(filePath)) {
+        return {
+            file: target.file,
+            strategy: target.strategy,
+            success: false,
+            error: `File not found: ${target.file}`,
+        };
+    }
+    try {
+        const content = readFileSync(filePath, 'utf-8');
+        let previousVersion;
+        let newContent;
+        switch (target.strategy) {
+            case 'plain': {
+                previousVersion = content.trim();
+                newContent = newVersion + '\n';
+                break;
+            }
+            case 'json': {
+                const field = target.field ?? 'version';
+                const json = JSON.parse(content);
+                previousVersion = getNestedField(json, field);
+                setNestedField(json, field, newVersion);
+                newContent = JSON.stringify(json, null, 2) + '\n';
+                break;
+            }
+            case 'toml': {
+                const key = target.key ?? 'version';
+                const versionRegex = new RegExp(`^(${key}\\s*=\\s*")([^"]+)(")`, 'm');
+                const match = content.match(versionRegex);
+                previousVersion = match?.[2];
+                newContent = content.replace(versionRegex, `$1${newVersion}$3`);
+                break;
+            }
+            case 'sed': {
+                const pattern = target.pattern ?? '';
+                if (!pattern.includes('{{VERSION}}')) {
+                    return {
+                        file: target.file,
+                        strategy: target.strategy,
+                        success: false,
+                        error: 'sed strategy requires {{VERSION}} placeholder in pattern',
+                    };
+                }
+                const regex = new RegExp(pattern.replace('{{VERSION}}', '([\\d.]+)'));
+                const match = content.match(regex);
+                previousVersion = match?.[1];
+                newContent = content.replace(regex, pattern.replace('{{VERSION}}', newVersion));
+                break;
+            }
+            default:
+                return {
+                    file: target.file,
+                    strategy: target.strategy,
+                    success: false,
+                    error: `Unknown strategy: ${target.strategy}`,
+                };
+        }
+        writeFileSync(filePath, newContent, 'utf-8');
+        return {
+            file: target.file,
+            strategy: target.strategy,
+            success: true,
+            previousVersion,
+            newVersion,
+        };
+    }
+    catch (err) {
+        return {
+            file: target.file,
+            strategy: target.strategy,
+            success: false,
+            error: String(err),
+        };
+    }
+}
+/** Bump version in all configured files. */
+export function bumpVersionFromConfig(newVersion, options = {}, cwd) {
+    if (!validateVersionFormat(newVersion)) {
+        throw new CleoError(ExitCode.VALIDATION_ERROR, `Invalid version: '${newVersion}' (expected X.Y.Z or YYYY.M.patch)`);
+    }
+    const targets = getVersionBumpConfig(cwd);
+    if (targets.length === 0) {
+        throw new CleoError(ExitCode.GENERAL_ERROR, 'No version bump targets configured. Add release.versionBump.files to .cleo/config.json');
+    }
+    const projectRoot = getProjectRoot(cwd);
+    const results = [];
+    if (options.dryRun) {
+        for (const target of targets) {
+            results.push({
+                file: target.file,
+                strategy: target.strategy,
+                success: true,
+                newVersion,
+            });
+        }
+        return { results, allSuccess: true };
+    }
+    for (const target of targets) {
+        results.push(bumpFile(target, newVersion, projectRoot));
+    }
+    const allSuccess = results.every(r => r.success);
+    return { results, allSuccess };
+}
+// Nested field helpers
+function getNestedField(obj, path) {
+    return path.split('.').reduce((acc, key) => acc?.[key], obj);
+}
+function setNestedField(obj, path, value) {
+    const parts = path.split('.');
+    let current = obj;
+    for (let i = 0; i < parts.length - 1; i++) {
+        if (typeof current[parts[i]] !== 'object')
+            current[parts[i]] = {};
+        current = current[parts[i]];
+    }
+    current[parts[parts.length - 1]] = value;
+}
+//# sourceMappingURL=version-bump.js.map

package/dist/core/release/version-bump.js.map

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package/dist/core/research/index.d.ts

@@ -0,0 +1,129 @@
+/**
+ * Research commands and manifest operations.
+ * @task T4465
+ * @epic T4454
+ */
+import type { DataAccessor } from '../../store/data-accessor.js';
+/** Research entry attached to a task. */
+export interface ResearchEntry {
+    id: string;
+    taskId: string;
+    topic: string;
+    findings: string[];
+    sources: string[];
+    status: 'pending' | 'complete' | 'partial';
+    createdAt: string;
+    updatedAt: string;
+}
+/** Manifest entry (JSONL line). */
+export interface ManifestEntry {
+    id: string;
+    file: string;
+    title: string;
+    date: string;
+    status: 'complete' | 'partial' | 'blocked';
+    agent_type: string;
+    topics: string[];
+    key_findings: string[];
+    actionable: boolean;
+    needs_followup: string[];
+    linked_tasks: string[];
+}
+/** Options for adding research. */
+export interface AddResearchOptions {
+    taskId: string;
+    topic: string;
+    findings?: string[];
+    sources?: string[];
+}
+/** Options for listing research. */
+export interface ListResearchOptions {
+    taskId?: string;
+    status?: 'pending' | 'complete' | 'partial';
+}
+/** Manifest query options. */
+export interface ManifestQueryOptions {
+    status?: string;
+    agentType?: string;
+    topic?: string;
+    taskId?: string;
+    limit?: number;
+}
+/**
+ * Add a research entry.
+ * @task T4465
+ */
+export declare function addResearch(options: AddResearchOptions, cwd?: string, accessor?: DataAccessor): Promise<ResearchEntry>;
+/**
+ * Show a specific research entry.
+ * @task T4465
+ */
+export declare function showResearch(researchId: string, cwd?: string): Promise<ResearchEntry>;
+/**
+ * List research entries with optional filtering.
+ * @task T4465
+ */
+export declare function listResearch(options?: ListResearchOptions, cwd?: string): Promise<ResearchEntry[]>;
+/**
+ * List pending research entries.
+ * @task T4465
+ */
+export declare function pendingResearch(cwd?: string): Promise<ResearchEntry[]>;
+/**
+ * Link a research entry to a task.
+ * @task T4465
+ */
+export declare function linkResearch(researchId: string, taskId: string, cwd?: string, accessor?: DataAccessor): Promise<{
+    researchId: string;
+    taskId: string;
+}>;
+/**
+ * Update research findings.
+ * @task T4465
+ */
+export declare function updateResearch(researchId: string, updates: {
+    findings?: string[];
+    sources?: string[];
+    status?: 'pending' | 'complete' | 'partial';
+}, cwd?: string): Promise<ResearchEntry>;
+/**
+ * Get research statistics.
+ * @task T4474
+ */
+export declare function statsResearch(cwd?: string): Promise<{
+    total: number;
+    byStatus: Record<string, number>;
+    byTopic: Record<string, number>;
+}>;
+/**
+ * Get research entries linked to a specific task.
+ * @task T4474
+ */
+export declare function linksResearch(taskId: string, cwd?: string): Promise<ResearchEntry[]>;
+/**
+ * Archive old research entries by status.
+ * Moves 'complete' entries older than a threshold to an archive,
+ * or returns summary of archivable entries.
+ * @task T4474
+ */
+export declare function archiveResearch(cwd?: string): Promise<{
+    action: string;
+    entriesArchived: number;
+    entriesRemaining: number;
+}>;
+/**
+ * Read manifest entries from MANIFEST.jsonl.
+ * @task T4465
+ */
+export declare function readManifest(cwd?: string): Promise<ManifestEntry[]>;
+/**
+ * Append a manifest entry.
+ * @task T4465
+ */
+export declare function appendManifest(entry: ManifestEntry, cwd?: string): Promise<void>;
+/**
+ * Query manifest entries.
+ * @task T4465
+ */
+export declare function queryManifest(options?: ManifestQueryOptions, cwd?: string): Promise<ManifestEntry[]>;
+//# sourceMappingURL=index.d.ts.map

package/dist/core/research/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/core/research/index.js

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+/**
+ * Research commands and manifest operations.
+ * @task T4465
+ * @epic T4454
+ */
+import { readJsonRequired, saveJson, appendJsonl, readJson } from '../../store/json.js';
+import { safeReadFile } from '../../store/atomic.js';
+import { CleoError } from '../errors.js';
+import { ExitCode } from '../../types/exit-codes.js';
+import { getTaskPath, getBackupDir, getLogPath, getCleoDirAbsolute, getManifestPath as getCentralManifestPath } from '../paths.js';
+import { logOperation } from '../tasks/add.js';
+import { join } from 'node:path';
+/**
+ * Get the research file path.
+ * @task T4465
+ */
+function getResearchPath(cwd) {
+    return join(getCleoDirAbsolute(cwd), 'research.json');
+}
+/**
+ * Get the manifest file path.
+ * @task T4465
+ */
+function getManifestPath(cwd) {
+    return getCentralManifestPath(cwd);
+}
+/**
+ * Read or initialize the research file.
+ * @task T4465
+ */
+async function readResearch(cwd) {
+    const path = getResearchPath(cwd);
+    const data = await readJson(path);
+    return data ?? { entries: [] };
+}
+/**
+ * Add a research entry.
+ * @task T4465
+ */
+export async function addResearch(options, cwd, accessor) {
+    const data = accessor
+        ? await accessor.loadTaskFile()
+        : await readJsonRequired(getTaskPath(cwd));
+    // Validate task exists
+    const task = data.tasks.find(t => t.id === options.taskId);
+    if (!task) {
+        throw new CleoError(ExitCode.NOT_FOUND, `Task not found: ${options.taskId}`);
+    }
+    if (!options.topic || options.topic.trim().length === 0) {
+        throw new CleoError(ExitCode.INVALID_INPUT, 'Research topic is required');
+    }
+    const research = await readResearch(cwd);
+    const now = new Date().toISOString();
+    const entry = {
+        id: `R${Date.now().toString(36)}`,
+        taskId: options.taskId,
+        topic: options.topic.trim(),
+        findings: options.findings ?? [],
+        sources: options.sources ?? [],
+        status: (options.findings?.length ?? 0) > 0 ? 'complete' : 'pending',
+        createdAt: now,
+        updatedAt: now,
+    };
+    research.entries.push(entry);
+    await saveJson(getResearchPath(cwd), research, { backupDir: getBackupDir(cwd) });
+    await logOperation(getLogPath(cwd), 'research_added', entry.id, {
+        taskId: options.taskId,
+        topic: options.topic,
+    }, accessor);
+    return entry;
+}
+/**
+ * Show a specific research entry.
+ * @task T4465
+ */
+export async function showResearch(researchId, cwd) {
+    const research = await readResearch(cwd);
+    const entry = research.entries.find(e => e.id === researchId);
+    if (!entry) {
+        throw new CleoError(ExitCode.NOT_FOUND, `Research entry not found: ${researchId}`);
+    }
+    return entry;
+}
+/**
+ * List research entries with optional filtering.
+ * @task T4465
+ */
+export async function listResearch(options = {}, cwd) {
+    const research = await readResearch(cwd);
+    let entries = research.entries;
+    if (options.taskId) {
+        entries = entries.filter(e => e.taskId === options.taskId);
+    }
+    if (options.status) {
+        entries = entries.filter(e => e.status === options.status);
+    }
+    return entries;
+}
+/**
+ * List pending research entries.
+ * @task T4465
+ */
+export async function pendingResearch(cwd) {
+    return listResearch({ status: 'pending' }, cwd);
+}
+/**
+ * Link a research entry to a task.
+ * @task T4465
+ */
+export async function linkResearch(researchId, taskId, cwd, accessor) {
+    const research = await readResearch(cwd);
+    const entry = research.entries.find(e => e.id === researchId);
+    if (!entry) {
+        throw new CleoError(ExitCode.NOT_FOUND, `Research entry not found: ${researchId}`);
+    }
+    // Validate task exists
+    const todoData = accessor
+        ? await accessor.loadTaskFile()
+        : await readJsonRequired(getTaskPath(cwd));
+    const task = todoData.tasks.find(t => t.id === taskId);
+    if (!task) {
+        throw new CleoError(ExitCode.NOT_FOUND, `Task not found: ${taskId}`);
+    }
+    entry.taskId = taskId;
+    entry.updatedAt = new Date().toISOString();
+    await saveJson(getResearchPath(cwd), research, { backupDir: getBackupDir(cwd) });
+    return { researchId, taskId };
+}
+/**
+ * Update research findings.
+ * @task T4465
+ */
+export async function updateResearch(researchId, updates, cwd) {
+    const research = await readResearch(cwd);
+    const entry = research.entries.find(e => e.id === researchId);
+    if (!entry) {
+        throw new CleoError(ExitCode.NOT_FOUND, `Research entry not found: ${researchId}`);
+    }
+    if (updates.findings)
+        entry.findings = updates.findings;
+    if (updates.sources)
+        entry.sources = updates.sources;
+    if (updates.status)
+        entry.status = updates.status;
+    entry.updatedAt = new Date().toISOString();
+    await saveJson(getResearchPath(cwd), research, { backupDir: getBackupDir(cwd) });
+    return entry;
+}
+/**
+ * Get research statistics.
+ * @task T4474
+ */
+export async function statsResearch(cwd) {
+    const research = await readResearch(cwd);
+    const byStatus = {};
+    const byTopic = {};
+    for (const entry of research.entries) {
+        byStatus[entry.status] = (byStatus[entry.status] || 0) + 1;
+        byTopic[entry.topic] = (byTopic[entry.topic] || 0) + 1;
+    }
+    return {
+        total: research.entries.length,
+        byStatus,
+        byTopic,
+    };
+}
+/**
+ * Get research entries linked to a specific task.
+ * @task T4474
+ */
+export async function linksResearch(taskId, cwd) {
+    if (!taskId) {
+        throw new CleoError(ExitCode.INVALID_INPUT, 'Task ID is required');
+    }
+    const research = await readResearch(cwd);
+    return research.entries.filter(e => e.taskId === taskId);
+}
+/**
+ * Archive old research entries by status.
+ * Moves 'complete' entries older than a threshold to an archive,
+ * or returns summary of archivable entries.
+ * @task T4474
+ */
+export async function archiveResearch(cwd) {
+    const research = await readResearch(cwd);
+    const completed = research.entries.filter(e => e.status === 'complete');
+    const remaining = research.entries.filter(e => e.status !== 'complete');
+    // Write back only non-complete entries
+    await saveJson(getResearchPath(cwd), { entries: remaining }, { backupDir: getBackupDir(cwd) });
+    return {
+        action: 'archive',
+        entriesArchived: completed.length,
+        entriesRemaining: remaining.length,
+    };
+}
+// === MANIFEST OPERATIONS ===
+/**
+ * Read manifest entries from MANIFEST.jsonl.
+ * @task T4465
+ */
+export async function readManifest(cwd) {
+    const manifestPath = getManifestPath(cwd);
+    const content = await safeReadFile(manifestPath);
+    if (!content)
+        return [];
+    const entries = [];
+    for (const line of content.split('\n')) {
+        const trimmed = line.trim();
+        if (!trimmed)
+            continue;
+        try {
+            entries.push(JSON.parse(trimmed));
+        }
+        catch {
+            // Skip malformed lines
+        }
+    }
+    return entries;
+}
+/**
+ * Append a manifest entry.
+ * @task T4465
+ */
+export async function appendManifest(entry, cwd) {
+    const manifestPath = getManifestPath(cwd);
+    await appendJsonl(manifestPath, entry);
+}
+/**
+ * Query manifest entries.
+ * @task T4465
+ */
+export async function queryManifest(options = {}, cwd) {
+    let entries = await readManifest(cwd);
+    if (options.status) {
+        entries = entries.filter(e => e.status === options.status);
+    }
+    if (options.agentType) {
+        entries = entries.filter(e => e.agent_type === options.agentType);
+    }
+    if (options.topic) {
+        entries = entries.filter(e => e.topics.includes(options.topic));
+    }
+    if (options.taskId) {
+        entries = entries.filter(e => e.linked_tasks.includes(options.taskId));
+    }
+    if (options.limit && options.limit > 0) {
+        entries = entries.slice(0, options.limit);
+    }
+    return entries;
+}
+//# sourceMappingURL=index.js.map

package/dist/core/research/index.js.map

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