@cleocode/cleo 2026.2.5

package/dist/cli/commands/research.js

@@ -0,0 +1,220 @@
+/**
+ * CLI research command with subcommands.
+ * @task T4465
+ * @epic T4454
+ */
+import { addResearch, showResearch, listResearch, pendingResearch, linkResearch, updateResearch, queryManifest, statsResearch, linksResearch, archiveResearch, } from '../../core/research/index.js';
+import { formatError } from '../../core/output.js';
+import { cliOutput } from '../renderers/index.js';
+import { getAccessor } from '../../store/data-accessor.js';
+import { CleoError } from '../../core/errors.js';
+/**
+ * Register the research command group.
+ * @task T4465
+ */
+export function registerResearchCommand(program) {
+    const research = program
+        .command('research')
+        .description('Research commands and manifest operations');
+    research
+        .command('add')
+        .description('Add a research entry')
+        .requiredOption('-t, --task <taskId>', 'Task ID to attach research to')
+        .requiredOption('--topic <topic>', 'Research topic')
+        .option('--findings <findings>', 'Comma-separated findings')
+        .option('--sources <sources>', 'Comma-separated sources')
+        .action(async (opts) => {
+        try {
+            const accessor = await getAccessor();
+            const result = await addResearch({
+                taskId: opts['task'],
+                topic: opts['topic'],
+                findings: opts['findings'] ? opts['findings'].split(',').map(s => s.trim()) : undefined,
+                sources: opts['sources'] ? opts['sources'].split(',').map(s => s.trim()) : undefined,
+            }, undefined, accessor);
+            cliOutput({ entry: result }, { command: 'research' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+    research
+        .command('show <id>')
+        .description('Show a research entry')
+        .action(async (id) => {
+        try {
+            const result = await showResearch(id);
+            cliOutput({ entry: result }, { command: 'research' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+    research
+        .command('list')
+        .description('List research entries')
+        .option('-t, --task <taskId>', 'Filter by task ID')
+        .option('-s, --status <status>', 'Filter by status')
+        .option('-l, --limit <n>', 'Limit results', parseInt)
+        .action(async (opts) => {
+        try {
+            let result = await listResearch({
+                taskId: opts['task'],
+                status: opts['status'],
+            });
+            const limit = opts['limit'];
+            if (limit && limit > 0) {
+                result = result.slice(0, limit);
+            }
+            cliOutput({ entries: result, count: result.length }, { command: 'research' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+    research
+        .command('pending')
+        .description('List pending research entries')
+        .action(async () => {
+        try {
+            const result = await pendingResearch();
+            cliOutput({ entries: result, count: result.length }, { command: 'research' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+    research
+        .command('link <researchId> <taskId>')
+        .description('Link a research entry to a task')
+        .action(async (researchId, taskId) => {
+        try {
+            const accessor = await getAccessor();
+            const result = await linkResearch(researchId, taskId, undefined, accessor);
+            cliOutput(result, { command: 'research' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+    research
+        .command('update <id>')
+        .description('Update research findings')
+        .option('--findings <findings>', 'Comma-separated findings')
+        .option('--sources <sources>', 'Comma-separated sources')
+        .option('-s, --status <status>', 'Set status')
+        .action(async (id, opts) => {
+        try {
+            const result = await updateResearch(id, {
+                findings: opts['findings'] ? opts['findings'].split(',').map(s => s.trim()) : undefined,
+                sources: opts['sources'] ? opts['sources'].split(',').map(s => s.trim()) : undefined,
+                status: opts['status'],
+            });
+            cliOutput({ entry: result }, { command: 'research' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+    research
+        .command('stats')
+        .description('Show research statistics')
+        .action(async () => {
+        try {
+            const result = await statsResearch();
+            cliOutput(result, { command: 'research' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+    research
+        .command('links <taskId>')
+        .description('Show research entries linked to a task')
+        .action(async (taskId) => {
+        try {
+            const result = await linksResearch(taskId);
+            cliOutput({ entries: result, count: result.length }, { command: 'research' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+    research
+        .command('archive')
+        .description('Archive completed research entries')
+        .action(async () => {
+        try {
+            const result = await archiveResearch();
+            cliOutput(result, { command: 'research' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+    // Manifest subcommands
+    research
+        .command('manifest')
+        .description('Query MANIFEST.jsonl entries')
+        .option('-s, --status <status>', 'Filter by status')
+        .option('-a, --agent-type <type>', 'Filter by agent type')
+        .option('--topic <topic>', 'Filter by topic')
+        .option('-t, --task <taskId>', 'Filter by linked task')
+        .option('-l, --limit <n>', 'Limit results')
+        .action(async (opts) => {
+        try {
+            const result = await queryManifest({
+                status: opts['status'],
+                agentType: opts['agentType'],
+                topic: opts['topic'],
+                taskId: opts['task'],
+                limit: opts['limit'] ? parseInt(opts['limit'], 10) : undefined,
+            });
+            cliOutput({ entries: result, count: result.length }, { command: 'research' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+}
+//# sourceMappingURL=research.js.map

package/dist/cli/commands/research.js.map

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package/dist/cli/commands/restore.d.ts

@@ -0,0 +1,7 @@
+/**
+ * CLI restore command - universal restoration (backup, archived, cancelled, completed tasks).
+ * @task T4454
+ */
+import { Command } from 'commander';
+export declare function registerRestoreCommand(program: Command): void;
+//# sourceMappingURL=restore.d.ts.map

package/dist/cli/commands/restore.d.ts.map

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package/dist/cli/commands/restore.js

@@ -0,0 +1,202 @@
+/**
+ * CLI restore command - universal restoration (backup, archived, cancelled, completed tasks).
+ * @task T4454
+ */
+import { formatError } from '../../core/output.js';
+import { CleoError } from '../../core/errors.js';
+import { cliOutput } from '../renderers/index.js';
+import { ExitCode } from '../../types/exit-codes.js';
+import { restoreFromBackup, listBackups } from '../../store/backup.js';
+import { getTaskPath, getConfigPath, getArchivePath, getBackupDir } from '../../core/paths.js';
+import { getAccessor } from '../../store/data-accessor.js';
+import { computeChecksum } from '../../store/json.js';
+export function registerRestoreCommand(program) {
+    const restoreCmd = program
+        .command('restore')
+        .description('Restore from backup or restore tasks from terminal states (archived, cancelled, completed)');
+    // Subcommand: restore backup
+    restoreCmd
+        .command('backup')
+        .description('Restore todo files from backup')
+        .option('--file <name>', 'Specific file to restore (tasks.json, config.json, etc.)')
+        .option('--dry-run', 'Preview what would be restored')
+        .action(async (opts) => {
+        try {
+            const backupDir = getBackupDir();
+            const fileName = opts['file'] || 'tasks.json';
+            // Map file name to target path
+            const targetPathMap = {
+                'tasks.json': getTaskPath(),
+                'config.json': getConfigPath(),
+                'tasks-archive.json': getArchivePath(),
+            };
+            const targetPath = targetPathMap[fileName];
+            if (!targetPath) {
+                throw new CleoError(ExitCode.INVALID_INPUT, `Unknown file: ${fileName}. Valid: ${Object.keys(targetPathMap).join(', ')}`);
+            }
+            // Check available backups
+            const backups = await listBackups(fileName, backupDir);
+            if (backups.length === 0) {
+                throw new CleoError(ExitCode.NOT_FOUND, `No backups found for ${fileName}`, {
+                    fix: 'cleo backup add',
+                });
+            }
+            if (opts['dryRun']) {
+                cliOutput({
+                    dryRun: true,
+                    file: fileName,
+                    wouldRestore: backups[0],
+                    availableBackups: backups.length,
+                }, { command: 'restore', message: 'Dry run - no changes made', operation: 'restore.backup' });
+                return;
+            }
+            const restoredFrom = await restoreFromBackup(fileName, backupDir, targetPath);
+            cliOutput({
+                restored: true,
+                file: fileName,
+                restoredFrom,
+                targetPath,
+            }, { command: 'restore', operation: 'restore.backup' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+    // Universal task restore - handles archived, cancelled, and completed tasks
+    restoreCmd
+        .command('task <task-id>')
+        .alias('unarchive')
+        .alias('reopen')
+        .alias('uncancel')
+        .description('Restore task from terminal state (archived, cancelled, or completed) back to active')
+        .option('--status <status>', 'Status to restore task as (default: pending)', 'pending')
+        .option('--preserve-status', 'Keep the original task status')
+        .option('--dry-run', 'Preview changes without applying')
+        .action(async (taskId, opts) => {
+        try {
+            const idPattern = /^T\d{3,}$/;
+            if (!idPattern.test(taskId)) {
+                throw new CleoError(ExitCode.INVALID_INPUT, `Invalid task ID: ${taskId}`);
+            }
+            const accessor = await getAccessor();
+            // First, check if task exists in active tasks
+            const data = await accessor.loadTaskFile();
+            const activeTask = data.tasks.find((t) => t.id === taskId);
+            if (activeTask) {
+                // Task is active but might be in terminal state (cancelled, done)
+                if (activeTask.status === 'cancelled' || activeTask.status === 'done') {
+                    // Update status back to pending/active
+                    const newStatus = opts['preserveStatus']
+                        ? activeTask.status
+                        : opts['status'] || 'pending';
+                    if (opts['dryRun']) {
+                        cliOutput({
+                            dryRun: true,
+                            taskId,
+                            title: activeTask.title,
+                            previousStatus: activeTask.status,
+                            newStatus,
+                            source: 'active-tasks',
+                        }, { command: 'restore', message: 'Dry run - no changes made', operation: 'tasks.restore' });
+                        return;
+                    }
+                    // Update the task
+                    const updatedTask = {
+                        ...activeTask,
+                        status: newStatus,
+                        updatedAt: new Date().toISOString(),
+                    };
+                    const taskIndex = data.tasks.findIndex((t) => t.id === taskId);
+                    data.tasks[taskIndex] = updatedTask;
+                    data._meta.checksum = computeChecksum(data.tasks);
+                    data.lastUpdated = new Date().toISOString();
+                    await accessor.saveTaskFile(data);
+                    cliOutput({
+                        restored: true,
+                        taskId,
+                        title: activeTask.title,
+                        previousStatus: activeTask.status,
+                        newStatus,
+                        source: 'active-tasks',
+                    }, { command: 'restore', operation: 'tasks.restore' });
+                    return;
+                }
+                else {
+                    throw new CleoError(ExitCode.VALIDATION_ERROR, `Task ${taskId} is already active with status: ${activeTask.status}`);
+                }
+            }
+            // Task not in active list - check archive
+            const archiveData = await accessor.loadArchive();
+            if (archiveData) {
+                const archivedTasks = archiveData.archivedTasks;
+                if (Array.isArray(archivedTasks)) {
+                    const taskIndex = archivedTasks.findIndex((t) => t.id === taskId);
+                    if (taskIndex !== -1) {
+                        const task = archivedTasks[taskIndex];
+                        if (opts['dryRun']) {
+                            cliOutput({
+                                dryRun: true,
+                                taskId,
+                                title: task.title,
+                                previousStatus: task.status,
+                                newStatus: opts['preserveStatus'] ? task.status : opts['status'],
+                                source: 'archive',
+                            }, { command: 'restore', message: 'Dry run - no changes made', operation: 'tasks.restore' });
+                            return;
+                        }
+                        // Determine new status
+                        let newStatus;
+                        if (opts['preserveStatus']) {
+                            newStatus = task.status;
+                        }
+                        else {
+                            newStatus = opts['status'] || 'pending';
+                        }
+                        // Update task - remove archive-specific fields
+                        const { archivedAt, archiveReason, ...restoredTaskBase } = task;
+                        const restoredTask = {
+                            ...restoredTaskBase,
+                            status: newStatus,
+                            updatedAt: new Date().toISOString(),
+                        };
+                        // Add to tasks
+                        data.tasks.push(restoredTask);
+                        data._meta.checksum = computeChecksum(data.tasks);
+                        data.lastUpdated = new Date().toISOString();
+                        // Remove from archive
+                        archivedTasks.splice(taskIndex, 1);
+                        // Save both files
+                        await accessor.saveTaskFile(data);
+                        await accessor.saveArchive(archiveData);
+                        cliOutput({
+                            restored: true,
+                            taskId,
+                            title: task.title,
+                            previousStatus: task.status,
+                            newStatus,
+                            source: 'archive',
+                            archiveRemaining: archivedTasks.length,
+                        }, { command: 'restore', operation: 'tasks.restore' });
+                        return;
+                    }
+                }
+            }
+            // Task not found anywhere
+            throw new CleoError(ExitCode.NOT_FOUND, `Task ${taskId} not found in active tasks or archive`, {
+                fix: `cleo find "${taskId}" to search for the task`,
+            });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+}
+//# sourceMappingURL=restore.js.map

package/dist/cli/commands/restore.js.map

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package/dist/cli/commands/roadmap.d.ts

@@ -0,0 +1,12 @@
+/**
+ * CLI roadmap command - roadmap generation from pending epics and changelog.
+ * @task T4538
+ * @epic T4454
+ */
+import { Command } from 'commander';
+/**
+ * Register the roadmap command.
+ * @task T4538
+ */
+export declare function registerRoadmapCommand(program: Command): void;
+//# sourceMappingURL=roadmap.d.ts.map

package/dist/cli/commands/roadmap.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"roadmap.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/roadmap.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAQpC;;;GAGG;AACH,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAqB7D"}

package/dist/cli/commands/roadmap.js

@@ -0,0 +1,37 @@
+/**
+ * CLI roadmap command - roadmap generation from pending epics and changelog.
+ * @task T4538
+ * @epic T4454
+ */
+import { getRoadmap, } from '../../core/roadmap/index.js';
+import { formatError } from '../../core/output.js';
+import { cliOutput } from '../renderers/index.js';
+import { CleoError } from '../../core/errors.js';
+/**
+ * Register the roadmap command.
+ * @task T4538
+ */
+export function registerRoadmapCommand(program) {
+    program
+        .command('roadmap')
+        .description('Generate roadmap from pending epics and CHANGELOG history')
+        .option('--include-history', 'Include release history from CHANGELOG')
+        .option('--upcoming-only', 'Only show upcoming/planned releases')
+        .action(async (opts) => {
+        try {
+            const result = await getRoadmap({
+                includeHistory: opts['includeHistory'],
+                upcomingOnly: opts['upcomingOnly'],
+            });
+            cliOutput(result, { command: 'roadmap' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+}
+//# sourceMappingURL=roadmap.js.map

package/dist/cli/commands/roadmap.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"roadmap.js","sourceRoot":"","sources":["../../../src/cli/commands/roadmap.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,EACL,UAAU,GACX,MAAM,6BAA6B,CAAC;AACrC,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAC;AACnD,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AAClD,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAC;AAEjD;;;GAGG;AACH,MAAM,UAAU,sBAAsB,CAAC,OAAgB;IACrD,OAAO;SACJ,OAAO,CAAC,SAAS,CAAC;SAClB,WAAW,CAAC,2DAA2D,CAAC;SACxE,MAAM,CAAC,mBAAmB,EAAE,wCAAwC,CAAC;SACrE,MAAM,CAAC,iBAAiB,EAAE,qCAAqC,CAAC;SAChE,MAAM,CAAC,KAAK,EAAE,IAA6B,EAAE,EAAE;QAC9C,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC;gBAC9B,cAAc,EAAE,IAAI,CAAC,gBAAgB,CAAwB;gBAC7D,YAAY,EAAE,IAAI,CAAC,cAAc,CAAwB;aAC1D,CAAC,CAAC;YACH,SAAS,CAAC,MAAM,EAAE,EAAE,OAAO,EAAE,SAAS,EAAE,CAAC,CAAC;QAC5C,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,IAAI,GAAG,YAAY,SAAS,EAAE,CAAC;gBAC7B,OAAO,CAAC,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC;gBAChC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;YACzB,CAAC;YACD,MAAM,GAAG,CAAC;QACZ,CAAC;IACH,CAAC,CAAC,CAAC;AACP,CAAC"}

package/dist/cli/commands/safestop.d.ts

@@ -0,0 +1,13 @@
+/**
+ * CLI safestop command - graceful shutdown for agents approaching context limits.
+ * Ported from scripts/safestop.sh
+ * @task T4551
+ * @epic T4545
+ */
+import { Command } from 'commander';
+/**
+ * Register the safestop command.
+ * @task T4551
+ */
+export declare function registerSafestopCommand(program: Command): void;
+//# sourceMappingURL=safestop.d.ts.map

package/dist/cli/commands/safestop.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"safestop.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/safestop.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AA0EpC;;;GAGG;AACH,wBAAgB,uBAAuB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CA0I9D"}