@cleocode/cleo 2026.2.5

package/dist/cli/commands/safestop.js

@@ -0,0 +1,217 @@
+/**
+ * CLI safestop command - graceful shutdown for agents approaching context limits.
+ * Ported from scripts/safestop.sh
+ * @task T4551
+ * @epic T4545
+ */
+import { execFileSync } from 'node:child_process';
+import { readFile, writeFile } from 'node:fs/promises';
+import { join } from 'node:path';
+import { formatError } from '../../core/output.js';
+import { cliOutput } from '../renderers/index.js';
+import { CleoError } from '../../core/errors.js';
+import { getCleoDir } from '../../core/paths.js';
+import { readJson, computeChecksum } from '../../store/json.js';
+import { getAccessor } from '../../store/data-accessor.js';
+/**
+ * Check if inside a git repository.
+ * @task T4551
+ */
+function isGitRepo() {
+    try {
+        execFileSync('git', ['rev-parse', '--git-dir'], { stdio: 'ignore' });
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+/**
+ * Get git status summary.
+ * @task T4551
+ */
+function getGitStatus() {
+    if (!isGitRepo())
+        return { changedFiles: 0, summary: 'not a git repo' };
+    try {
+        const output = execFileSync('git', ['status', '--porcelain'], { encoding: 'utf-8' });
+        const lines = output.trim().split('\n').filter(Boolean);
+        return {
+            changedFiles: lines.length,
+            summary: lines.length > 0 ? `${lines.length} files changed` : 'clean',
+        };
+    }
+    catch {
+        return { changedFiles: 0, summary: 'error' };
+    }
+}
+/**
+ * Get modified file list from git.
+ * @task T4551
+ */
+function getModifiedFiles() {
+    try {
+        const output = execFileSync('git', ['status', '--porcelain'], { encoding: 'utf-8' });
+        return output.trim().split('\n')
+            .filter(Boolean)
+            .map((line) => line.substring(3))
+            .slice(0, 20);
+    }
+    catch {
+        return [];
+    }
+}
+/**
+ * Get context percentage from state file.
+ * @task T4551
+ */
+async function getContextPercentage(cleoDir) {
+    try {
+        const stateFile = join(cleoDir, 'context', 'state.json');
+        const data = await readJson(stateFile);
+        if (!data)
+            return 0;
+        const cw = data['contextWindow'];
+        return typeof cw?.['percentage'] === 'number' ? cw['percentage'] : 0;
+    }
+    catch {
+        return 0;
+    }
+}
+/**
+ * Register the safestop command.
+ * @task T4551
+ */
+export function registerSafestopCommand(program) {
+    program
+        .command('safestop')
+        .description('Graceful shutdown for agents approaching context limits')
+        .requiredOption('--reason <reason>', 'Reason for stopping')
+        .option('--commit', 'Commit pending git changes with WIP message')
+        .option('--handoff <file>', 'Generate handoff document (use - for stdout)')
+        .option('--no-session-end', 'Update notes but do not end session')
+        .option('--dry-run', 'Show actions without executing')
+        .action(async (opts) => {
+        try {
+            const reason = opts['reason'];
+            const doCommit = opts['commit'] ?? false;
+            const handoffFile = opts['handoff'];
+            const endSession = opts['sessionEnd'] !== false;
+            const dryRun = opts['dryRun'] ?? false;
+            const cleoDir = getCleoDir();
+            const percentage = await getContextPercentage(cleoDir);
+            // Get focused task
+            const accessor = await getAccessor();
+            const todoData = await accessor.loadTaskFile();
+            const taskId = todoData?.focus?.currentTask ?? null;
+            const taskTitle = taskId
+                ? todoData?.tasks.find((t) => t.id === taskId)?.title ?? null
+                : null;
+            const gitStatus = getGitStatus();
+            if (dryRun) {
+                const actions = [];
+                if (taskId)
+                    actions.push(`Update task ${taskId} notes`);
+                if (doCommit)
+                    actions.push('Git commit with WIP message');
+                if (handoffFile)
+                    actions.push(`Generate handoff to ${handoffFile}`);
+                if (endSession)
+                    actions.push('End CLEO session');
+                cliOutput({
+                    dryRun: true,
+                    reason,
+                    contextPercentage: percentage,
+                    focusedTask: taskId ? { id: taskId, title: taskTitle } : null,
+                    gitStatus: gitStatus.summary,
+                    wouldPerform: actions,
+                }, { command: 'safestop' });
+                return;
+            }
+            const performed = [];
+            // 1. Update task notes
+            if (taskId && todoData) {
+                const task = todoData.tasks.find((t) => t.id === taskId);
+                if (task) {
+                    task.notes = task.notes ?? [];
+                    task.notes.push(`SAFESTOP (${percentage}%): ${reason}`);
+                    task.updatedAt = new Date().toISOString();
+                    performed.push(`Updated task ${taskId} notes`);
+                }
+            }
+            // 2. Git commit if requested
+            if (doCommit && isGitRepo() && gitStatus.changedFiles > 0) {
+                try {
+                    execFileSync('git', ['add', '-A'], { stdio: 'ignore' });
+                    const commitMsg = `WIP: ${taskTitle ?? 'safestop'} - ${reason}`;
+                    execFileSync('git', ['commit', '-m', commitMsg, '--no-verify'], { stdio: 'ignore' });
+                    performed.push(`Committed: ${commitMsg}`);
+                }
+                catch {
+                    performed.push('Git commit failed');
+                }
+            }
+            // 3. Generate handoff
+            if (handoffFile) {
+                const sessionFile = join(cleoDir, '.current-session');
+                let sessionId = '';
+                try {
+                    sessionId = (await readFile(sessionFile, 'utf-8')).trim();
+                }
+                catch {
+                    // No session
+                }
+                const handoff = {
+                    $schema: 'https://cleo-dev.com/schemas/v1/handoff.schema.json',
+                    version: '1.0.0',
+                    generatedAt: new Date().toISOString(),
+                    reason,
+                    contextPercentage: percentage,
+                    session: { cleoSessionId: sessionId },
+                    focusedTask: {
+                        id: taskId ?? '',
+                        title: taskTitle ?? '',
+                        progressNote: todoData?.focus?.sessionNote ?? '',
+                    },
+                    workInProgress: {
+                        gitStatus: gitStatus.summary,
+                        filesModified: getModifiedFiles(),
+                    },
+                    resumeCommand: `cleo session resume ${sessionId}`,
+                };
+                const handoffJson = JSON.stringify(handoff, null, 2);
+                if (handoffFile === '-') {
+                    process.stdout.write(handoffJson + '\n');
+                }
+                else {
+                    await writeFile(handoffFile, handoffJson);
+                }
+                performed.push(`Handoff saved to ${handoffFile}`);
+            }
+            // 4. End session (mark in notes, actual session end delegated to session command)
+            if (endSession) {
+                performed.push('Session marked for end');
+            }
+            // Save todo data if we modified it
+            if (taskId && todoData) {
+                todoData._meta.checksum = computeChecksum(todoData.tasks);
+                todoData.lastUpdated = new Date().toISOString();
+                await accessor.saveTaskFile(todoData);
+            }
+            cliOutput({
+                reason,
+                contextPercentage: percentage,
+                focusedTask: taskId ? { id: taskId, title: taskTitle } : null,
+                performed,
+            }, { command: 'safestop', message: 'Safestop complete' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+}
+//# sourceMappingURL=safestop.js.map

package/dist/cli/commands/safestop.js.map

@@ -0,0 +1 @@
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package/dist/cli/commands/self-update.d.ts

@@ -0,0 +1,15 @@
+/**
+ * CLI self-update command - check for and install updates.
+ *
+ * After updating, runs post-update diagnostics:
+ *   - Pre-flight storage migration check
+ *   - Auto-triggers upgrade if JSON data needs SQLite migration
+ *
+ * Designed for LLM agents: structured JSON output, actionable fix commands.
+ *
+ * @task T4699
+ * @epic T4454
+ */
+import { Command } from 'commander';
+export declare function registerSelfUpdateCommand(program: Command): void;
+//# sourceMappingURL=self-update.d.ts.map

package/dist/cli/commands/self-update.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli/commands/self-update.js

@@ -0,0 +1,195 @@
+/**
+ * CLI self-update command - check for and install updates.
+ *
+ * After updating, runs post-update diagnostics:
+ *   - Pre-flight storage migration check
+ *   - Auto-triggers upgrade if JSON data needs SQLite migration
+ *
+ * Designed for LLM agents: structured JSON output, actionable fix commands.
+ *
+ * @task T4699
+ * @epic T4454
+ */
+import { formatError } from '../../core/output.js';
+import { cliOutput } from '../renderers/index.js';
+import { CleoError } from '../../core/errors.js';
+import { ExitCode } from '../../types/exit-codes.js';
+import { getCleoHome } from '../../core/paths.js';
+import { checkStorageMigration } from '../../core/migration/preflight.js';
+import { runUpgrade } from '../../core/upgrade.js';
+import { readFile, access } from 'node:fs/promises';
+import { constants as fsConstants } from 'node:fs';
+import { join } from 'node:path';
+import { execFile } from 'node:child_process';
+import { promisify } from 'node:util';
+const execAsync = promisify(execFile);
+const GITHUB_REPO = 'kryptobaseddev/cleo';
+async function getCurrentVersion() {
+    const cleoHome = getCleoHome();
+    try {
+        const content = await readFile(join(cleoHome, 'VERSION'), 'utf-8');
+        return content.trim();
+    }
+    catch {
+        return 'unknown';
+    }
+}
+async function isDevInstall() {
+    const cleoHome = getCleoHome();
+    try {
+        await access(join(cleoHome, '.git'), fsConstants.R_OK);
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+async function getLatestVersion() {
+    try {
+        const { stdout } = await execAsync('curl', [
+            '-sL',
+            '--max-time', '10',
+            `https://api.github.com/repos/${GITHUB_REPO}/releases/latest`,
+        ]);
+        const data = JSON.parse(stdout);
+        return data.tag_name?.replace(/^v/, '') ?? null;
+    }
+    catch {
+        return null;
+    }
+}
+export function registerSelfUpdateCommand(program) {
+    program
+        .command('self-update')
+        .description('Check for and install CLEO updates, then run post-update diagnostics')
+        .option('--check', 'Only check if update is available')
+        .option('--status', 'Show current vs latest version')
+        .option('--version <ver>', 'Update to specific version')
+        .option('--force', 'Force update even if same version')
+        .option('--post-update', 'Run post-update diagnostics and migration only')
+        .action(async (opts) => {
+        try {
+            // --post-update: skip version check, just run diagnostics + upgrade
+            if (opts['postUpdate']) {
+                await runPostUpdateDiagnostics();
+                return;
+            }
+            const currentVersion = await getCurrentVersion();
+            const isDev = await isDevInstall();
+            if (isDev && !opts['force']) {
+                // For dev installs, still run post-update diagnostics
+                const preflight = checkStorageMigration();
+                cliOutput({
+                    devMode: true,
+                    currentVersion,
+                    message: 'Dev install detected. Use git pull to update.',
+                    storagePreflight: {
+                        migrationNeeded: preflight.migrationNeeded,
+                        summary: preflight.summary,
+                        fix: preflight.fix,
+                    },
+                }, { command: 'self-update' });
+                if (preflight.migrationNeeded) {
+                    process.stderr.write(`\n⚠ Storage migration needed: ${preflight.summary}\n`
+                        + `  Fix: ${preflight.fix}\n`
+                        + `  Or run: cleo upgrade\n\n`);
+                }
+                process.exit(ExitCode.NO_DATA);
+                return;
+            }
+            if (opts['status'] || opts['check']) {
+                const latest = await getLatestVersion();
+                if (!latest) {
+                    throw new CleoError(ExitCode.DEPENDENCY_ERROR, 'Failed to check latest version from GitHub');
+                }
+                const updateAvailable = latest !== currentVersion;
+                const preflight = checkStorageMigration();
+                cliOutput({
+                    currentVersion,
+                    latestVersion: latest,
+                    updateAvailable,
+                    storagePreflight: {
+                        migrationNeeded: preflight.migrationNeeded,
+                        summary: preflight.summary,
+                        fix: preflight.fix,
+                    },
+                }, { command: 'self-update' });
+                if (opts['check'] && updateAvailable) {
+                    process.exit(1); // exit 1 means update available for scripting
+                }
+                return;
+            }
+            // Actual update - delegated to shell for file system operations
+            const latest = opts['version'] ?? await getLatestVersion();
+            if (!latest) {
+                throw new CleoError(ExitCode.DEPENDENCY_ERROR, 'Failed to check latest version from GitHub');
+            }
+            if (latest === currentVersion && !opts['force']) {
+                // Up to date - still run post-update diagnostics
+                await runPostUpdateDiagnostics();
+                cliOutput({
+                    currentVersion,
+                    upToDate: true,
+                }, { command: 'self-update', message: 'Already up to date' });
+                return;
+            }
+            // For the TS port, self-update delegates the heavy lifting
+            // to the install script since we need to replace files on disk
+            cliOutput({
+                currentVersion,
+                targetVersion: latest,
+                message: 'Run the install script to update: curl -fsSL https://raw.githubusercontent.com/kryptobaseddev/cleo/main/install.sh | bash',
+                postUpdate: 'After updating, run: cleo self-update --post-update',
+            }, { command: 'self-update' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+}
+/**
+ * Run post-update diagnostics and auto-upgrade.
+ *
+ * Called after a version update to detect and fix:
+ *   - JSON→SQLite storage migration
+ *   - Schema version mismatches
+ *   - Structural data repairs
+ *
+ * @task T4699
+ */
+async function runPostUpdateDiagnostics() {
+    const preflight = checkStorageMigration();
+    if (preflight.migrationNeeded) {
+        process.stderr.write(`\n⚠ Storage migration detected: ${preflight.summary}\n`
+            + `  Running automatic upgrade...\n\n`);
+        const result = await runUpgrade({ autoMigrate: true });
+        cliOutput({
+            postUpdate: true,
+            upgrade: {
+                success: result.success,
+                applied: result.applied,
+                actions: result.actions,
+                storageMigration: result.storageMigration,
+                errors: result.errors.length > 0 ? result.errors : undefined,
+            },
+        }, { command: 'self-update', message: result.success ? 'Post-update upgrade complete.' : 'Post-update upgrade had errors.' });
+        if (!result.success) {
+            process.stderr.write(`\n⚠ Some upgrade steps failed. Manual fix:\n`
+                + `  ${preflight.fix}\n\n`);
+        }
+    }
+    else {
+        cliOutput({
+            postUpdate: true,
+            storagePreflight: {
+                migrationNeeded: false,
+                summary: preflight.summary,
+            },
+        }, { command: 'self-update', message: 'No post-update actions needed.' });
+    }
+}
+//# sourceMappingURL=self-update.js.map

package/dist/cli/commands/self-update.js.map

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package/dist/cli/commands/sequence.d.ts

@@ -0,0 +1,12 @@
+/**
+ * CLI sequence command - task ID sequence management.
+ * @task T4538
+ * @epic T4454
+ */
+import { Command } from 'commander';
+/**
+ * Register the sequence command group.
+ * @task T4538
+ */
+export declare function registerSequenceCommand(program: Command): void;
+//# sourceMappingURL=sequence.d.ts.map

package/dist/cli/commands/sequence.d.ts.map

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package/dist/cli/commands/sequence.js

@@ -0,0 +1,67 @@
+/**
+ * CLI sequence command - task ID sequence management.
+ * @task T4538
+ * @epic T4454
+ */
+import { showSequence, checkSequence, repairSequence, } from '../../core/sequence/index.js';
+import { formatError } from '../../core/output.js';
+import { cliOutput } from '../renderers/index.js';
+import { CleoError } from '../../core/errors.js';
+/**
+ * Register the sequence command group.
+ * @task T4538
+ */
+export function registerSequenceCommand(program) {
+    const sequence = program
+        .command('sequence')
+        .description('Inspect and manage task ID sequence (show/check/repair)');
+    sequence
+        .command('show')
+        .description('Display current sequence state')
+        .action(async () => {
+        try {
+            const result = await showSequence();
+            cliOutput(result, { command: 'sequence' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+    sequence
+        .command('check')
+        .description('Verify counter >= max(todo + archive)')
+        .action(async () => {
+        try {
+            const result = await checkSequence();
+            cliOutput(result, { command: 'sequence' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+    sequence
+        .command('repair')
+        .description('Reset counter to max + 1 if behind')
+        .action(async () => {
+        try {
+            const result = await repairSequence();
+            cliOutput(result, { command: 'sequence' });
+        }
+        catch (err) {
+            if (err instanceof CleoError) {
+                console.error(formatError(err));
+                process.exit(err.code);
+            }
+            throw err;
+        }
+    });
+}
+//# sourceMappingURL=sequence.js.map

package/dist/cli/commands/sequence.js.map

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package/dist/cli/commands/session.d.ts

@@ -0,0 +1,12 @@
+/**
+ * CLI session command group.
+ * @task T4463
+ * @epic T4454
+ */
+import { Command } from 'commander';
+/**
+ * Register the session command group.
+ * @task T4463
+ */
+export declare function registerSessionCommand(program: Command): void;
+//# sourceMappingURL=session.d.ts.map

package/dist/cli/commands/session.d.ts.map

@@ -0,0 +1 @@
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