@apollo-annotation/jbrowse-plugin-apollo 1.1.0 → 1.1.2

package/dist/FeatureDetailsWidget/Translation.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Translation.d.ts","sourceRoot":"","sources":["../../src/FeatureDetailsWidget/Translation.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EACV,iBAAiB,EACjB,aAAa,EACb,oBAAoB,EACrB,MAAM,wBAAwB,CAAA;AAmB/B,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AA0BpD,wBAAgB,WAAW,CAAC,EAC1B,gBAAgB,EAChB,YAAY,EACZ,OAAO,EACP,MAAM,EAEN,iBAAiB,EACjB,MAAM,EACN,MAAM,EACN,OAAO,EACP,OAAO,GACR,EAAE;IACD,gBAAgB,EAAE,OAAO,CAAA;IACzB,YAAY,EAAE,oBAAoB,EAAE,EAAE,CAAA;IACtC,OAAO,EAAE,aAAa,CAAA;IACtB,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,GAAG,SAAS,CAAA;IAC1B,iBAAiB,CACf,WAAW,EAAE,MAAM,EACnB,WAAW,EAAE,MAAM,EACnB,OAAO,EAAE,iBAAiB,EAC1B,KAAK,EAAE,OAAO,EACd,UAAU,CAAC,EAAE,MAAM,IAAI,GACtB,OAAO,CAAA;IACV,MAAM,EAAE,MAAM,CAAA;IACd,MAAM,EAAE,MAAM,CAAA;IACd,OAAO,EAAE,iBAAiB,CAAA;IAC1B,OAAO,EAAE,kBAAkB,CAAA;CAC5B,2CAyRA"}
+{"version":3,"file":"Translation.d.ts","sourceRoot":"","sources":["../../src/FeatureDetailsWidget/Translation.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EACV,iBAAiB,EACjB,aAAa,EACb,oBAAoB,EACrB,MAAM,wBAAwB,CAAA;AAmB/B,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AA0BpD,wBAAgB,WAAW,CAAC,EAC1B,gBAAgB,EAChB,YAAY,EACZ,OAAO,EACP,MAAM,EAEN,iBAAiB,EACjB,MAAM,EACN,MAAM,EACN,OAAO,EACP,OAAO,GACR,EAAE;IACD,gBAAgB,EAAE,OAAO,CAAA;IACzB,YAAY,EAAE,oBAAoB,EAAE,EAAE,CAAA;IACtC,OAAO,EAAE,aAAa,CAAA;IACtB,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,GAAG,SAAS,CAAA;IAC1B,iBAAiB,CACf,WAAW,EAAE,MAAM,EACnB,WAAW,EAAE,MAAM,EACnB,OAAO,EAAE,iBAAiB,EAC1B,KAAK,EAAE,OAAO,EACd,UAAU,CAAC,EAAE,MAAM,IAAI,GACtB,OAAO,CAAA;IACV,MAAM,EAAE,MAAM,CAAA;IACd,MAAM,EAAE,MAAM,CAAA;IACd,OAAO,EAAE,iBAAiB,CAAA;IAC1B,OAAO,EAAE,kBAAkB,CAAA;CAC5B,2CAiSA"}

package/dist/components/CreateApolloAnnotation.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"CreateApolloAnnotation.d.ts","sourceRoot":"","sources":["../../src/components/CreateApolloAnnotation.tsx"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,wBAAwB,CAAA;AAMvE,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,wCAAwC,CAAA;AAEtE,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAA;AAyB9D,UAAU,2BAA2B;IACnC,OAAO,EAAE,oBAAoB,CAAA;IAC7B,WAAW,IAAI,IAAI,CAAA;IACnB,iBAAiB,EAAE,yBAAyB,CAAA;IAC5C,QAAQ,EAAE,QAAQ,CAAA;IAClB,QAAQ,EAAE,MAAM,CAAA;IAChB,MAAM,EAAE;QACN,KAAK,EAAE,MAAM,CAAA;QACb,GAAG,EAAE,MAAM,CAAA;KACZ,CAAA;CACF;AAuDD,wBAAgB,cAAc,CAAC,OAAO,EAAE,yBAAyB,UAUhE;AAED,wBAAgB,eAAe,CAAC,OAAO,EAAE,yBAAyB,UAUjE;AAED,wBAAgB,YAAY,CAAC,OAAO,EAAE,yBAAyB,UAiB9D;AAcD,wBAAgB,sBAAsB,CAAC,EACrC,iBAAiB,EACjB,QAAQ,EACR,WAAW,EACX,QAAQ,EACR,OAAO,EACP,MAAM,GACP,EAAE,2BAA2B,2CA0d7B"}
+{"version":3,"file":"CreateApolloAnnotation.d.ts","sourceRoot":"","sources":["../../src/components/CreateApolloAnnotation.tsx"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,wBAAwB,CAAA;AAMvE,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,wCAAwC,CAAA;AAEtE,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAA;AAyB9D,UAAU,2BAA2B;IACnC,OAAO,EAAE,oBAAoB,CAAA;IAC7B,WAAW,IAAI,IAAI,CAAA;IACnB,iBAAiB,EAAE,yBAAyB,CAAA;IAC5C,QAAQ,EAAE,QAAQ,CAAA;IAClB,QAAQ,EAAE,MAAM,CAAA;IAChB,MAAM,EAAE;QACN,KAAK,EAAE,MAAM,CAAA;QACb,GAAG,EAAE,MAAM,CAAA;KACZ,CAAA;CACF;AAuDD,wBAAgB,cAAc,CAAC,OAAO,EAAE,yBAAyB,UAUhE;AAED,wBAAgB,eAAe,CAAC,OAAO,EAAE,yBAAyB,UAUjE;AAED,wBAAgB,YAAY,CAAC,OAAO,EAAE,yBAAyB,UAiB9D;AAcD,wBAAgB,sBAAsB,CAAC,EACrC,iBAAiB,EACjB,QAAQ,EACR,WAAW,EACX,QAAQ,EACR,OAAO,EACP,MAAM,GACP,EAAE,2BAA2B,2CA6d7B"}

package/dist/index.esm.js

@@ -66,7 +66,7 @@ import RedoIcon from '@mui/icons-material/Redo';
 import UndoIcon from '@mui/icons-material/Undo';
 import SaveIcon from '@mui/icons-material/Save';
 
-var version = "1.1.0";
+var version = "1.1.2";
 
 const ApolloConfigSchema = ConfigurationSchema('ApolloInternetAccount', {
     baseURL: {
@@ -7251,7 +7251,15 @@ updateCDSLocation, cdsMin, cdsMax, feature, session, }) {
         }
         // Trim any sequence before first start codon and after stop codon
         const startCodonIndex = proteinSequence.indexOf('M');
-        const stopCodonIndex = proteinSequence.lastIndexOf('*');
+        if (startCodonIndex === -1) {
+            notify('Start codon not found', 'error');
+            return;
+        }
+        const stopCodonIndex = proteinSequence.indexOf('*', startCodonIndex);
+        if (stopCodonIndex === -1) {
+            notify('Stop codon not found', 'error');
+            return;
+        }
         const startCodonPos = startCodonIndex * 3;
         const stopCodonPos = stopCodonIndex * 3;
         const startCodonGenomicLoc = getCodonGenomicLocation(startCodonPos);
@@ -12787,7 +12795,7 @@ function CreateApolloAnnotation({ annotationFeature, assembly, handleClose, refS
     const [selectedDestinationFeature, setSelectedDestinationFeature] = useState();
     const apolloAssembly = apolloSessionModel.apolloDataStore.assemblies.get(assembly.name);
     const refSeq = apolloAssembly?.refSeqs.get(refSeqId);
-    const features = refSeq?.getFeatures(region.start, region.end);
+    const features = useMemo(() => refSeq?.getFeatures(region.start, region.end), [refSeq, region.start, region.end]);
     useEffect(() => {
         const getDestinationFeatures = () => {
             const filteredFeatures = [];