npm - @apollo-annotation/jbrowse-plugin-apollo - Versions diffs - 1.0.0 → 1.1.0 - Mend

@apollo-annotation/jbrowse-plugin-apollo 1.0.0 → 1.1.0

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Files changed (172) hide show

package/dist/session/ClientDataStore.d.ts ADDED Viewed

@@ -0,0 +1,2194 @@
+import { type AnnotationFeatureModel, type AnnotationFeatureSnapshot, type BackendDriverType, type CheckResultSnapshot } from '@apollo-annotation/mst';
+import { type Region } from '@jbrowse/core/util';
+import type { LocalPathLocation, UriLocation } from '@jbrowse/core/util/types/mst';
+import { type Instance } from '@jbrowse/mobx-state-tree';
+import { type ApolloInternetAccount, type BackendDriver, CollaborationServerDriver, LocalDriver } from '../BackendDrivers';
+import { ChangeManager } from '../ChangeManager';
+import type ApolloPluginConfigurationSchema from '../config';
+export declare function clientDataStoreFactory(AnnotationFeatureExtended: typeof AnnotationFeatureModel): import("@jbrowse/mobx-state-tree").IModelType<{
+    typeName: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<"Client">, [undefined]>;
+    assemblies: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+        _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        refSeqs: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+            _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            description: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+            features: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            sequence: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        }, {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        comments: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        backendDriverType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    }, {
+        getByRefName(refName: string): ({
+            _id: string;
+            name: string;
+            description: string;
+            features: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
+            sequence: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
+        } & import("@jbrowse/mobx-state-tree").NonEmptyObject & {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            description: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+            features: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            sequence: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        }, {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
+    } & {
+        addRefSeq(id: string, name: string, description?: string): {
+            _id: string;
+            name: string;
+            description: string;
+            features: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
+            sequence: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
+        } & import("@jbrowse/mobx-state-tree").NonEmptyObject & {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            description: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+            features: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            sequence: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        }, {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        addComment(comment: string): number;
+    }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    checkResults: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+        _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        cause: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        ids: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IModelType<{
+            _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+            max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+            strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+            children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+            attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+        }, {
+            readonly length: number;
+            readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+            readonly minWithChildren: number;
+            readonly maxWithChildren: number;
+            hasDescendant(featureId: string): boolean;
+            readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+            readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+        } & {
+            readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+        } & {
+            setAttributes(attributes: Map<string, string[]>): void;
+            setAttribute(key: string, value: string[]): void;
+            setType(type: string): void;
+            setRefSeq(refSeq: string): void;
+            setMin(min: number): void;
+            setMax(max: number): void;
+            setStrand(strand?: 1 | -1): void;
+            addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteChild(childFeatureId: string): void;
+        } & {
+            update({ children, max, min, refSeq, strand, }: {
+                refSeq: string;
+                min: number;
+                max: number;
+                strand?: 1 | -1;
+                children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+            }): void;
+        } & {
+            readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+            readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+            readonly assemblyId: string;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>>;
+        refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+        end: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+        ignored: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        message: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    ontologyManager: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
+        ontologies: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+            name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            version: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+            source: import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "BlobLocation";
+                name: string;
+                blobId: string;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "LocalPathLocation";
+                localPath: string;
+            }>, {
+                locationType: "UriLocation";
+                uri: string;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                    internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+                }> | undefined;
+            } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | ({
+                locationType: "UriLocation";
+                uri: string;
+            } & Partial<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> & import("@jbrowse/mobx-state-tree").NonEmptyObject)>;
+            options: import("@jbrowse/mobx-state-tree").IType<import("../OntologyManager/OntologyStore").OntologyStoreOptions, import("../OntologyManager/OntologyStore").OntologyStoreOptions, import("../OntologyManager/OntologyStore").OntologyStoreOptions>;
+            equivalentTypes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+        }, {
+            dataStore: undefined | import("../OntologyManager/OntologyStore").default;
+            startedEquivalentTypeRequests: Set<string>;
+        } & {
+            ping(): void;
+            initDataStore(): void;
+            afterCreate(): void;
+            setEquivalentTypes(type: string, equivalentTypes: string[]): void;
+        } & {
+            loadEquivalentTypes: (type: string) => Promise<void>;
+        } & {
+            afterCreate(): void;
+            setEquivalentTypes(type: string, equivalentTypes: string[]): void;
+        } & {
+            isTypeOf(queryType: string, typeOf: string): boolean;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        prefixes: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>, [undefined]>;
+    }, {
+        readonly featureTypeOntologyName: string;
+    } & {
+        readonly featureTypeOntology: ({
+            name: string;
+            version: string;
+            source: ({
+                locationType: "BlobLocation";
+                name: string;
+                blobId: string;
+            } & import("@jbrowse/mobx-state-tree").NonEmptyObject & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "BlobLocation";
+                name: string;
+                blobId: string;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "LocalPathLocation";
+                localPath: string;
+            }>, {
+                locationType: "UriLocation";
+                uri: string;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                    internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+                }> | undefined;
+            } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | ({
+                locationType: "UriLocation";
+                uri: string;
+            } & Partial<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> & import("@jbrowse/mobx-state-tree").NonEmptyObject)>>) | ({
+                locationType: "LocalPathLocation";
+                localPath: string;
+            } & import("@jbrowse/mobx-state-tree").NonEmptyObject & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "BlobLocation";
+                name: string;
+                blobId: string;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "LocalPathLocation";
+                localPath: string;
+            }>, {
+                locationType: "UriLocation";
+                uri: string;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                    internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+                }> | undefined;
+            } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | ({
+                locationType: "UriLocation";
+                uri: string;
+            } & Partial<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> & import("@jbrowse/mobx-state-tree").NonEmptyObject)>>) | ({
+                locationType: "UriLocation";
+                uri: string;
+            } & Partial<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> & import("@jbrowse/mobx-state-tree").NonEmptyObject & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "BlobLocation";
+                name: string;
+                blobId: string;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "LocalPathLocation";
+                localPath: string;
+            }>, {
+                locationType: "UriLocation";
+                uri: string;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                    internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+                }> | undefined;
+            } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | ({
+                locationType: "UriLocation";
+                uri: string;
+            } & Partial<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> & import("@jbrowse/mobx-state-tree").NonEmptyObject)>>);
+            options: import("../OntologyManager/OntologyStore").OntologyStoreOptions & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("../OntologyManager/OntologyStore").OntologyStoreOptions, import("../OntologyManager/OntologyStore").OntologyStoreOptions, import("../OntologyManager/OntologyStore").OntologyStoreOptions>>;
+            equivalentTypes: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>;
+        } & import("@jbrowse/mobx-state-tree").NonEmptyObject & {
+            dataStore: undefined | import("../OntologyManager/OntologyStore").default;
+            startedEquivalentTypeRequests: Set<string>;
+        } & {
+            ping(): void;
+            initDataStore(): void;
+            afterCreate(): void;
+            setEquivalentTypes(type: string, equivalentTypes: string[]): void;
+        } & {
+            loadEquivalentTypes: (type: string) => Promise<void>;
+        } & {
+            afterCreate(): void;
+            setEquivalentTypes(type: string, equivalentTypes: string[]): void;
+        } & {
+            isTypeOf(queryType: string, typeOf: string): boolean;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            version: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+            source: import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "BlobLocation";
+                name: string;
+                blobId: string;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "LocalPathLocation";
+                localPath: string;
+            }>, {
+                locationType: "UriLocation";
+                uri: string;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                    internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+                }> | undefined;
+            } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | ({
+                locationType: "UriLocation";
+                uri: string;
+            } & Partial<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> & import("@jbrowse/mobx-state-tree").NonEmptyObject)>;
+            options: import("@jbrowse/mobx-state-tree").IType<import("../OntologyManager/OntologyStore").OntologyStoreOptions, import("../OntologyManager/OntologyStore").OntologyStoreOptions, import("../OntologyManager/OntologyStore").OntologyStoreOptions>;
+            equivalentTypes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+        }, {
+            dataStore: undefined | import("../OntologyManager/OntologyStore").default;
+            startedEquivalentTypeRequests: Set<string>;
+        } & {
+            ping(): void;
+            initDataStore(): void;
+            afterCreate(): void;
+            setEquivalentTypes(type: string, equivalentTypes: string[]): void;
+        } & {
+            loadEquivalentTypes: (type: string) => Promise<void>;
+        } & {
+            afterCreate(): void;
+            setEquivalentTypes(type: string, equivalentTypes: string[]): void;
+        } & {
+            isTypeOf(queryType: string, typeOf: string): boolean;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
+        findOntology(name: string, version?: string): ({
+            name: string;
+            version: string;
+            source: ({
+                locationType: "BlobLocation";
+                name: string;
+                blobId: string;
+            } & import("@jbrowse/mobx-state-tree").NonEmptyObject & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "BlobLocation";
+                name: string;
+                blobId: string;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "LocalPathLocation";
+                localPath: string;
+            }>, {
+                locationType: "UriLocation";
+                uri: string;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                    internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+                }> | undefined;
+            } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | ({
+                locationType: "UriLocation";
+                uri: string;
+            } & Partial<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> & import("@jbrowse/mobx-state-tree").NonEmptyObject)>>) | ({
+                locationType: "LocalPathLocation";
+                localPath: string;
+            } & import("@jbrowse/mobx-state-tree").NonEmptyObject & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "BlobLocation";
+                name: string;
+                blobId: string;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "LocalPathLocation";
+                localPath: string;
+            }>, {
+                locationType: "UriLocation";
+                uri: string;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                    internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+                }> | undefined;
+            } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | ({
+                locationType: "UriLocation";
+                uri: string;
+            } & Partial<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> & import("@jbrowse/mobx-state-tree").NonEmptyObject)>>) | ({
+                locationType: "UriLocation";
+                uri: string;
+            } & Partial<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> & import("@jbrowse/mobx-state-tree").NonEmptyObject & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "BlobLocation";
+                name: string;
+                blobId: string;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "LocalPathLocation";
+                localPath: string;
+            }>, {
+                locationType: "UriLocation";
+                uri: string;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                    internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+                }> | undefined;
+            } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | ({
+                locationType: "UriLocation";
+                uri: string;
+            } & Partial<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> & import("@jbrowse/mobx-state-tree").NonEmptyObject)>>);
+            options: import("../OntologyManager/OntologyStore").OntologyStoreOptions & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("../OntologyManager/OntologyStore").OntologyStoreOptions, import("../OntologyManager/OntologyStore").OntologyStoreOptions, import("../OntologyManager/OntologyStore").OntologyStoreOptions>>;
+            equivalentTypes: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>;
+        } & import("@jbrowse/mobx-state-tree").NonEmptyObject & {
+            dataStore: undefined | import("../OntologyManager/OntologyStore").default;
+            startedEquivalentTypeRequests: Set<string>;
+        } & {
+            ping(): void;
+            initDataStore(): void;
+            afterCreate(): void;
+            setEquivalentTypes(type: string, equivalentTypes: string[]): void;
+        } & {
+            loadEquivalentTypes: (type: string) => Promise<void>;
+        } & {
+            afterCreate(): void;
+            setEquivalentTypes(type: string, equivalentTypes: string[]): void;
+        } & {
+            isTypeOf(queryType: string, typeOf: string): boolean;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            version: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+            source: import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "BlobLocation";
+                name: string;
+                blobId: string;
+            }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                locationType: "LocalPathLocation";
+                localPath: string;
+            }>, {
+                locationType: "UriLocation";
+                uri: string;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                    internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+                }> | undefined;
+            } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+                name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
+                locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+                localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}> | ({
+                locationType: "UriLocation";
+                uri: string;
+            } & Partial<{
+                locationType: "UriLocation";
+                uri: string;
+                baseUri: string | undefined;
+                internetAccountId: string | undefined;
+                internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
+                    internetAccountType: string;
+                    authInfo: any;
+                }> | undefined;
+            }> & import("@jbrowse/mobx-state-tree").NonEmptyObject)>;
+            options: import("@jbrowse/mobx-state-tree").IType<import("../OntologyManager/OntologyStore").OntologyStoreOptions, import("../OntologyManager/OntologyStore").OntologyStoreOptions, import("../OntologyManager/OntologyStore").OntologyStoreOptions>;
+            equivalentTypes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+        }, {
+            dataStore: undefined | import("../OntologyManager/OntologyStore").default;
+            startedEquivalentTypeRequests: Set<string>;
+        } & {
+            ping(): void;
+            initDataStore(): void;
+            afterCreate(): void;
+            setEquivalentTypes(type: string, equivalentTypes: string[]): void;
+        } & {
+            loadEquivalentTypes: (type: string) => Promise<void>;
+        } & {
+            afterCreate(): void;
+            setEquivalentTypes(type: string, equivalentTypes: string[]): void;
+        } & {
+            isTypeOf(queryType: string, typeOf: string): boolean;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
+        openOntology(name: string, version?: string): import("../OntologyManager/OntologyStore").default | undefined;
+        applyPrefixes(uri: string): string;
+        expandPrefixes(uri: string): string;
+    } & {
+        addOntology(name: string, version: string, source: Instance<typeof LocalPathLocation> | Instance<typeof UriLocation>, options?: import("../OntologyManager/OntologyStore").OntologyStoreOptions): void;
+    }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
+}, {
+    readonly internetAccounts: (({
+        id: string;
+        type: string;
+        configuration: {
+            [x: string]: any;
+        } & import("@jbrowse/mobx-state-tree").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+            } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+            name: {
+                description: string;
+                type: string;
+                defaultValue: string;
+            };
+            description: {
+                description: string;
+                type: string;
+                defaultValue: string;
+            };
+            authHeader: {
+                description: string;
+                type: string;
+                defaultValue: string;
+            };
+            tokenType: {
+                description: string;
+                type: string;
+                defaultValue: string;
+            };
+            domains: {
+                description: string;
+                type: string;
+                defaultValue: never[];
+            };
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "internetAccountId">>>;
+    } & import("@jbrowse/mobx-state-tree").NonEmptyObject & {
+        readonly name: string;
+        readonly description: string;
+        readonly internetAccountId: string;
+        readonly authHeader: string;
+        readonly tokenType: string;
+        readonly domains: string[];
+        readonly toggleContents: import("react").ReactNode;
+        readonly SelectorComponent: import("@jbrowse/core/util").AnyReactComponentType | undefined;
+        readonly selectorLabel: string | undefined;
+    } & {
+        handlesLocation(location: import("@jbrowse/core/util").UriLocation): boolean;
+        readonly tokenKey: string;
+    } & {
+        getTokenFromUser(_resolve: (token: string) => void, _reject: (error: Error) => void): void;
+        storeToken(token: string): void;
+        removeToken(): void;
+        retrieveToken(): string | null;
+        validateToken(token: string, _loc: import("@jbrowse/core/util").UriLocation): Promise<string>;
+    } & {
+        getToken(location?: import("@jbrowse/core/util").UriLocation): Promise<string>;
+    } & {
+        addAuthHeaderToInit(init?: RequestInit, token?: string): {
+            headers: Headers;
+            body?: BodyInit | null;
+            cache?: RequestCache;
+            credentials?: RequestCredentials;
+            integrity?: string;
+            keepalive?: boolean;
+            method?: string;
+            mode?: RequestMode;
+            priority?: RequestPriority;
+            redirect?: RequestRedirect;
+            referrer?: string;
+            referrerPolicy?: ReferrerPolicy;
+            signal?: AbortSignal | null;
+            window?: null;
+        };
+        getPreAuthorizationInformation(location: import("@jbrowse/core/util").UriLocation): Promise<{
+            internetAccountType: string;
+            authInfo: {
+                token: string;
+                configuration: any;
+            };
+        }>;
+    } & {
+        getFetcher(loc?: import("@jbrowse/core/util").UriLocation): (input: RequestInfo, init?: RequestInit) => Promise<Response>;
+    } & {
+        openLocation(location: import("@jbrowse/core/util").UriLocation): import("@jbrowse/core/util/io").RemoteFileWithRangeCache;
+    } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+            name: {
+                description: string;
+                type: string;
+                defaultValue: string;
+            };
+            description: {
+                description: string;
+                type: string;
+                defaultValue: string;
+            };
+            authHeader: {
+                description: string;
+                type: string;
+                defaultValue: string;
+            };
+            tokenType: {
+                description: string;
+                type: string;
+                defaultValue: string;
+            };
+            domains: {
+                description: string;
+                type: string;
+                defaultValue: never[];
+            };
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "internetAccountId">>;
+    }, {
+        readonly name: string;
+        readonly description: string;
+        readonly internetAccountId: string;
+        readonly authHeader: string;
+        readonly tokenType: string;
+        readonly domains: string[];
+        readonly toggleContents: import("react").ReactNode;
+        readonly SelectorComponent: import("@jbrowse/core/util").AnyReactComponentType | undefined;
+        readonly selectorLabel: string | undefined;
+    } & {
+        handlesLocation(location: import("@jbrowse/core/util").UriLocation): boolean;
+        readonly tokenKey: string;
+    } & {
+        getTokenFromUser(_resolve: (token: string) => void, _reject: (error: Error) => void): void;
+        storeToken(token: string): void;
+        removeToken(): void;
+        retrieveToken(): string | null;
+        validateToken(token: string, _loc: import("@jbrowse/core/util").UriLocation): Promise<string>;
+    } & {
+        getToken(location?: import("@jbrowse/core/util").UriLocation): Promise<string>;
+    } & {
+        addAuthHeaderToInit(init?: RequestInit, token?: string): {
+            headers: Headers;
+            body?: BodyInit | null;
+            cache?: RequestCache;
+            credentials?: RequestCredentials;
+            integrity?: string;
+            keepalive?: boolean;
+            method?: string;
+            mode?: RequestMode;
+            priority?: RequestPriority;
+            redirect?: RequestRedirect;
+            referrer?: string;
+            referrerPolicy?: ReferrerPolicy;
+            signal?: AbortSignal | null;
+            window?: null;
+        };
+        getPreAuthorizationInformation(location: import("@jbrowse/core/util").UriLocation): Promise<{
+            internetAccountType: string;
+            authInfo: {
+                token: string;
+                configuration: any;
+            };
+        }>;
+    } & {
+        getFetcher(loc?: import("@jbrowse/core/util").UriLocation): (input: RequestInfo, init?: RequestInit) => Promise<Response>;
+    } & {
+        openLocation(location: import("@jbrowse/core/util").UriLocation): import("@jbrowse/core/util/io").RemoteFileWithRangeCache;
+    }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | import("../ApolloInternetAccount/model").ApolloInternetAccountModel)[];
+    readonly pluginConfiguration: Instance<typeof ApolloPluginConfigurationSchema>;
+    getFeature(featureId: string): ({
+        _id: string;
+        refSeq: string;
+        type: string;
+        min: number;
+        max: number;
+        strand: 1 | -1 | undefined;
+        children: (import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined;
+        attributes: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>;
+    } & import("@jbrowse/mobx-state-tree").NonEmptyObject & {
+        readonly length: number;
+        readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+        readonly minWithChildren: number;
+        readonly maxWithChildren: number;
+        hasDescendant(featureId: string): boolean;
+        readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+        readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+    } & {
+        readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+    } & {
+        setAttributes(attributes: Map<string, string[]>): void;
+        setAttribute(key: string, value: string[]): void;
+        setType(type: string): void;
+        setRefSeq(refSeq: string): void;
+        setMin(min: number): void;
+        setMax(max: number): void;
+        setStrand(strand?: 1 | -1): void;
+        addChild(childFeature: AnnotationFeatureSnapshot): void;
+        deleteChild(childFeatureId: string): void;
+    } & {
+        update({ children, max, min, refSeq, strand, }: {
+            refSeq: string;
+            min: number;
+            max: number;
+            strand?: 1 | -1;
+            children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+        }): void;
+    } & {
+        readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+        readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+        readonly assemblyId: string;
+    } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+        _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+        max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+        strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+        children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+        attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+    }, {
+        readonly length: number;
+        readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+        readonly minWithChildren: number;
+        readonly maxWithChildren: number;
+        hasDescendant(featureId: string): boolean;
+        readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+        readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+    } & {
+        readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+    } & {
+        setAttributes(attributes: Map<string, string[]>): void;
+        setAttribute(key: string, value: string[]): void;
+        setType(type: string): void;
+        setRefSeq(refSeq: string): void;
+        setMin(min: number): void;
+        setMax(max: number): void;
+        setStrand(strand?: 1 | -1): void;
+        addChild(childFeature: AnnotationFeatureSnapshot): void;
+        deleteChild(childFeatureId: string): void;
+    } & {
+        update({ children, max, min, refSeq, strand, }: {
+            refSeq: string;
+            min: number;
+            max: number;
+            strand?: 1 | -1;
+            children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+        }): void;
+    } & {
+        readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+        readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+        readonly assemblyId: string;
+    }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
+} & {
+    addAssembly(assemblyId: string, backendDriverType?: BackendDriverType): {
+        _id: string;
+        refSeqs: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
+            _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            description: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+            features: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            sequence: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        }, {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+            _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            description: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+            features: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            sequence: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        }, {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
+        comments: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+        backendDriverType: string;
+    } & import("@jbrowse/mobx-state-tree").NonEmptyObject & {
+        getByRefName(refName: string): ({
+            _id: string;
+            name: string;
+            description: string;
+            features: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
+            sequence: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
+        } & import("@jbrowse/mobx-state-tree").NonEmptyObject & {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            description: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+            features: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            sequence: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        }, {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
+    } & {
+        addRefSeq(id: string, name: string, description?: string): {
+            _id: string;
+            name: string;
+            description: string;
+            features: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
+            sequence: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
+        } & import("@jbrowse/mobx-state-tree").NonEmptyObject & {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            description: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+            features: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            sequence: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        }, {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        addComment(comment: string): number;
+    } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+        _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        refSeqs: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+            _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            description: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+            features: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            sequence: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        }, {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        comments: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        backendDriverType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    }, {
+        getByRefName(refName: string): ({
+            _id: string;
+            name: string;
+            description: string;
+            features: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
+            sequence: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
+        } & import("@jbrowse/mobx-state-tree").NonEmptyObject & {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            description: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+            features: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            sequence: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        }, {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
+    } & {
+        addRefSeq(id: string, name: string, description?: string): {
+            _id: string;
+            name: string;
+            description: string;
+            features: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
+            sequence: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
+        } & import("@jbrowse/mobx-state-tree").NonEmptyObject & {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            description: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+            features: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+                _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+                children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+                attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
+            }, {
+                readonly length: number;
+                readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
+                readonly minWithChildren: number;
+                readonly maxWithChildren: number;
+                hasDescendant(featureId: string): boolean;
+                readonly transcriptExonParts: import("@apollo-annotation/mst").TranscriptPart[];
+                readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
+            } & {
+                readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
+            } & {
+                setAttributes(attributes: Map<string, string[]>): void;
+                setAttribute(key: string, value: string[]): void;
+                setType(type: string): void;
+                setRefSeq(refSeq: string): void;
+                setMin(min: number): void;
+                setMax(max: number): void;
+                setStrand(strand?: 1 | -1): void;
+                addChild(childFeature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+                deleteChild(childFeatureId: string): void;
+            } & {
+                update({ children, max, min, refSeq, strand, }: {
+                    refSeq: string;
+                    min: number;
+                    max: number;
+                    strand?: 1 | -1;
+                    children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
+                }): void;
+            } & {
+                readonly parent: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+                readonly topLevelFeature: import("@apollo-annotation/mst").AnnotationFeature;
+                readonly assemblyId: string;
+            }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            sequence: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+                start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+                sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        }, {
+            addFeature(feature: import("../../../apollo-mst/dist/AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+            deleteFeature(featureId: string): boolean;
+            setDescription(description: string): void;
+            addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("@apollo-annotation/mst").Sequence>): void;
+        } & {
+            getSequence(start: number, stop: number): string;
+            getFeatures(min: number, max: number): import("@apollo-annotation/mst").AnnotationFeature[];
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        addComment(comment: string): number;
+    }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+} & {
+    addFeature(assemblyId: string, feature: AnnotationFeatureSnapshot): void;
+    deleteFeature(featureId: string): void;
+    deleteAssembly(assemblyId: string): void;
+    addCheckResult(checkResult: CheckResultSnapshot): void;
+    addCheckResults(checkResults: CheckResultSnapshot[]): void;
+    deleteCheckResult(checkResultId: string): void;
+    clearCheckResults(): void;
+} & {
+    changeManager: ChangeManager;
+    collaborationServerDriver: CollaborationServerDriver;
+    localDriver: LocalDriver;
+} & {
+    afterCreate(): void;
+} & {
+    getBackendDriver(assemblyId: string): BackendDriver | undefined;
+    getInternetAccount(assemblyName?: string, internetAccountId?: string): ApolloInternetAccount;
+} & {
+    loadFeatures: (regions: Region[]) => Promise<void>;
+    loadRefSeq: (regions: Region[]) => Promise<void>;
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
+export type ClientDataStoreStateModel = ReturnType<typeof clientDataStoreFactory>;
+export interface ClientDataStoreModel extends Instance<ClientDataStoreStateModel> {
+}
+//# sourceMappingURL=ClientDataStore.d.ts.map