@apollo-annotation/jbrowse-plugin-apollo 0.3.13 → 1.0.0

package/dist/LinearApolloDisplay/stateModel/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/stateModel/index.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,aAAa,MAAM,6BAA6B,CAAA;AAC5D,OAAO,KAAK,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAA;AAC7E,OAAO,EAAE,KAAK,QAAQ,EAAS,MAAM,0BAA0B,CAAA;AAM/D,wBAAgB,iBAAiB,CAC/B,aAAa,EAAE,aAAa,EAC5B,YAAY,EAAE,0BAA0B;eANR,0BAA0B,wBAE3C,0BAA0B;iBAGtC,0BAA0B;0BAK7B,0BAFwB,gBAAgB,0BAA0B;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;mBAOX,wCACzC;;;;mBAE0C,0BAC1C,wBACb,0BAA0B;uBACf,0BAA0B,wBAAwB,0BAA0B;yBAA8D,0BAA0B;kCAAyD,0BAA0B,gBAAgB,0BAA0B;;;;;kBAAwK,0BAA0B,yBAAyB,0BAA0B;0BAA8C,CAAC;kBAAgC,CAAC;;;;;;;mBAA0M,wCAAwC;;;;mBAAyJ,0BAA0B,wBAAwB,0BAA0B;uBAAsC,0BAA0B,wBAAwB,0BAA0B;yBAA8D,0BAA0B;kCAAyD,0BAA0B,gBAAgB,0BAA0B;;;;;kBAAwK,0BAA0B,yBAAyB,0BAA0B;;;iCAAqG,oBAAqB;;;;;;;;;;;mBAAsU,wCAAwC;;;;;;;;;;2BAAqX,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;kCAAsD,CAAC;0BAAwC,CAAC;;;;;;;2BAAkQ,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;;;yCAA6H,oBAAqB;;;;mBAA+K,0BAA0B,wBAAwB,0BAA0B;uBAAsC,0BAA0B,wBAAwB,0BAA0B;yBAA8D,0BAA0B;kCAAyD,0BAA0B,gBAAgB,0BAA0B;;;;;;;;;;;2BAAqY,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;kCAAsD,CAAC;0BAAwC,CAAC;;;;;;;2BAAkQ,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;;;yCAA6H,oBAAqB;;;;kBAA8K,0BAA0B,yBAAyB,0BAA0B;;kCAA6D,qCAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;4BAA9zO,MAAO,UAAU;;;;;;;;;;;;;;;;;4BAAovD,MAAO,UAAU;;;;;;;;;;;yGARn1F;AAED,MAAM,MAAM,6BAA6B,GAAG,UAAU,CAAC,OAAO,iBAAiB,CAAC,CAAA;AAIhF,MAAM,WAAW,mBACf,SAAQ,QAAQ,CAAC,6BAA6B,CAAC;CAAG"}

package/dist/LinearApolloDisplay/stateModel/layouts.d.ts

@@ -2,6 +2,7 @@ import type { AnnotationFeature } from '@apollo-annotation/mst';
 import type PluginManager from '@jbrowse/core/PluginManager';
 import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 import type { ApolloSessionModel } from '../../session';
+import type { Layout } from '../glyphs/Glyph';
 export declare function layoutsModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
     id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
@@ -244,6 +245,22 @@ export declare function layoutsModelFactory(pluginManager: PluginManager, config
             type?: undefined;
             checked?: undefined;
         })[];
+        icon?: undefined;
+        onClick?: undefined;
+    } | {
+        label: string;
+        icon: typeof import("../../components").Export;
+        onClick: () => void;
+        type?: undefined;
+        subMenu?: undefined;
+    } | {
+        label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
+        onClick: () => void;
+        type?: undefined;
+        subMenu?: undefined;
     })[];
 } & {
     setSelectedFeature(feature?: AnnotationFeature): void;
@@ -259,14 +276,19 @@ export declare function layoutsModelFactory(pluginManager: PluginManager, config
     addSeenFeature(feature: AnnotationFeature): void;
     deleteSeenFeature(featureId: string): void;
 } & {
-    readonly featureLayouts: Map<number, [number, string][]>[];
-    getFeatureLayoutPosition(feature: AnnotationFeature): {
-        layoutIndex: number;
-        layoutRow: number;
-        featureRow: number;
-    } | undefined;
+    getCanonicalRefName(assemblyName: string, refSeq: string): string;
+} & {
+    /**
+     * Is a feature in one of the currently displayed regions and also is not
+     * currently filtered out by the display.
+     */
+    isFeatureDisplayed(feature: AnnotationFeature): boolean;
+} & {
+    readonly layouts: Map<string, Map<string, Layout>>;
+    getRowForFeature(feature: AnnotationFeature): number | undefined;
+    getFeaturesAtPosition(assemblyName: string, refName: string, row: number, bp: number): AnnotationFeature[];
 } & {
-    readonly highestRow: number;
+    highestRow(assemblyName: string): number;
 } & {
     afterAttach(): void;
 }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;

package/dist/LinearApolloDisplay/stateModel/layouts.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"layouts.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/stateModel/layouts.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,aAAa,MAAM,6BAA6B,CAAA;AAC5D,OAAO,KAAK,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAA;AAK7E,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAA;AAYvD,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,iBAAiB,CAAA;AAK7C,wBAAgB,mBAAmB,CACjC,aAAa,EAAE,aAAa,EAC5B,YAAY,EAAE,0BAA0B;eAxBM,0BAAyB,wBACtD,0BAA0B;iBACzB,0BAA0B;0BACf,0BAElB,gBAAgB,0BAA0B;;;;;;;;;;;;;;;;;;;;;;;mBAWvD,wCAAuC;;;;mBAIlB,0BAEjB,wBAAwB,0BACX;uBACM,0BAEtB,wBAAwB,0BAA0B;yBAEnB,0BAA0B;kCAGtD,0BACgB,gBACP,0BAA0B;;;;;kBAMxB,0BAA0B,yBACpB,0BAA0B;0BAGvC,CAAH;kBAAgC,CAAC;;;;;;;mBAO5B,wCAEP;;;;mBAOG,0BAA0B,wBACxB,0BAAuB;uBAEvB,0BAA0B,wBACrB,0BAA0B;yBAIvB,0BAA0B;kCACR,0BACX,gBAAgB,0BAChC;;;;;kBAIwB,0BAAyB,yBAC7C,0BACP;;;iCAGE,oBAEC;;;;;;;;;;;mBAQU,wCAEI;;;;;;;;;;2BAOgB,wCACzB;;;;2BASI,0BAA0B,wBAAyB,0BACvD;+BAA8C,0BACpD,wBACE,0BAAwB;iCAGxB,0BACQ;0CACP,0BAA0B,gBAAgB,0BACzC;;;;;0BAMQ,0BAEP,yBAAyB,0BAA0B;kCAEhD,CAAC;0BACG,CAAC;;;;;;;2BAOT,wCAAqC;;;;2BAKnB,0BAClB,wBACI,0BAAY;+BAGb,0BAA0B,wBAAwB,0BACvC;iCAC6C,0BAClD;0CACP,0BAAuB,gBAAiB,0BAC1C;;;;;0BAIkB,0BACd,yBACJ,0BAAoB;;;yCAGN,oBAAqB;;;;mBAG9B,0BAA0B,wBAC3B,0BAAqB;uBACnB,0BAAY,wBACZ,0BAAS;yBACX,0BACK;kCACL,0BAAqB,gBAAgB,0BACzC;;;;;;;;;;;2BAOe,wCACN;;;;2BAIC,0BACd,wBAAwB,0BACb;+BACG,0BAAsB,wBAE1B,0BACX;iCAC8B,0BAEhC;0CAEmB,0BAA0B,gBACpC,0BACU;;;;;0BAGkB,0BAA0B,yBAC7C,0BACL;kCACF,CAAD;0BACiB,CAAC;;;;;;;2BAMnB,wCACmB;;;;2BAKE,0BAEzB,wBAAwB,0BAC3B;+BAA8C,0BACjC,wBACN,0BAEV;iCAEQ,0BACT;0CAEiB,0BACH,gBACP,0BACN;;;;;0BAOY,0BAAyB,yBAC3B,0BACG;;;yCAMP,oBACL;;;;kBAMY,0BACE,yBACT,0BAAmB;;kCACF,qCACnB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iCA1N6B,MAAM;sBAGjB,iBAAiB;;4BAoBX,iBAAiB;iCAGZ,MAAM;;sCAKD,MAAM,UAAU,MAAM;;IAexD;;;OAGG;gCACyB,iBAAiB;;;8BAiInB,iBAAiB;wCAW3B,MAAM,WACX,MAAM,OACV,MAAM,MACP,MAAM,GACT,iBAAiB,EAAE;;6BAqBG,MAAM;;;yGAyEpC"}

package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts

@@ -3,9 +3,19 @@ import type PluginManager from '@jbrowse/core/PluginManager';
 import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 import type { MenuItem } from '@jbrowse/core/ui';
 import { type Instance } from '@jbrowse/mobx-state-tree';
+import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
 import type { CSSProperties } from 'react';
-import { type Edge, type MousePosition, type MousePositionWithFeature } from '../../util';
+import { type Edge } from '../../util';
 import type { CanvasMouseEvent } from '../types';
+export interface MousePosition {
+    x: number;
+    y: number;
+    assemblyName: string;
+    refName: string;
+    bp: number;
+    regionNumber: number;
+}
+export declare function getMousePosition(event: React.MouseEvent, lgv: LinearGenomeViewModel): MousePosition;
 export declare function mouseEventsModelIntermediateFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
     id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
@@ -26,7 +36,6 @@ export declare function mouseEventsModelIntermediateFactory(pluginManager: Plugi
     apolloRowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
     detailsMinHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
     detailsHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
-    lastRowTooltipBufferHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
     isShown: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     filteredTranscripts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
 }, {
@@ -207,7 +216,7 @@ export declare function mouseEventsModelIntermediateFactory(pluginManager: Plugi
 } & {
     scrollTop: number;
 } & {
-    readonly lgv: import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel;
+    readonly lgv: LinearGenomeViewModel;
     readonly height: number;
     readonly loading: boolean;
     readonly zoomThresholdSetting: number;
@@ -255,6 +264,22 @@ export declare function mouseEventsModelIntermediateFactory(pluginManager: Plugi
             type?: undefined;
             checked?: undefined;
         })[];
+        icon?: undefined;
+        onClick?: undefined;
+    } | {
+        label: string;
+        icon: typeof import("../../components").Export;
+        onClick: () => void;
+        type?: undefined;
+        subMenu?: undefined;
+    } | {
+        label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
+        onClick: () => void;
+        type?: undefined;
+        subMenu?: undefined;
     })[];
 } & {
     setSelectedFeature(feature?: AnnotationFeature): void;
@@ -270,14 +295,15 @@ export declare function mouseEventsModelIntermediateFactory(pluginManager: Plugi
     addSeenFeature(feature: AnnotationFeature): void;
     deleteSeenFeature(featureId: string): void;
 } & {
-    readonly featureLayouts: Map<number, [number, string][]>[];
-    getFeatureLayoutPosition(feature: AnnotationFeature): {
-        layoutIndex: number;
-        layoutRow: number;
-        featureRow: number;
-    } | undefined;
+    getCanonicalRefName(assemblyName: string, refSeq: string): string;
+} & {
+    isFeatureDisplayed(feature: AnnotationFeature): boolean;
+} & {
+    readonly layouts: Map<string, Map<string, import("../glyphs/Glyph").Layout>>;
+    getRowForFeature(feature: AnnotationFeature): number | undefined;
+    getFeaturesAtPosition(assemblyName: string, refName: string, row: number, bp: number): AnnotationFeature[];
 } & {
-    readonly highestRow: number;
+    highestRow(assemblyName: string): number;
 } & {
     afterAttach(): void;
 } & {
@@ -286,7 +312,8 @@ export declare function mouseEventsModelIntermediateFactory(pluginManager: Plugi
     collaboratorCanvas: HTMLCanvasElement | null;
     theme: import("@mui/material").Theme;
 } & {
-    readonly featuresHeight: number;
+    featuresHeight(assemblyName: string): number;
+    readonly canvasPatterns: Record<"forward" | "backward", CanvasPattern | null>;
 } & {
     toggleShown(): void;
     setDetailsHeight(newHeight: number): void;
@@ -307,6 +334,7 @@ export declare function mouseEventsModelIntermediateFactory(pluginManager: Plugi
     cursor: CSSProperties["cursor"] | undefined;
 } & {
     getMousePosition(event: React.MouseEvent): MousePosition;
+    getFeaturesAtMousePosition(mousePosition: MousePosition): AnnotationFeature[];
 } & {
     continueDrag(mousePosition: MousePosition, event: CanvasMouseEvent): void;
     setDragging(dragInfo?: {
@@ -342,7 +370,6 @@ export declare function mouseEventsModelFactory(pluginManager: PluginManager, co
     apolloRowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
     detailsMinHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
     detailsHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
-    lastRowTooltipBufferHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
     isShown: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     filteredTranscripts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
 }, {
@@ -523,7 +550,7 @@ export declare function mouseEventsModelFactory(pluginManager: PluginManager, co
 } & {
     scrollTop: number;
 } & {
-    readonly lgv: import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel;
+    readonly lgv: LinearGenomeViewModel;
     readonly height: number;
     readonly loading: boolean;
     readonly zoomThresholdSetting: number;
@@ -571,6 +598,22 @@ export declare function mouseEventsModelFactory(pluginManager: PluginManager, co
             type?: undefined;
             checked?: undefined;
         })[];
+        icon?: undefined;
+        onClick?: undefined;
+    } | {
+        label: string;
+        icon: typeof import("../../components").Export;
+        onClick: () => void;
+        type?: undefined;
+        subMenu?: undefined;
+    } | {
+        label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
+        onClick: () => void;
+        type?: undefined;
+        subMenu?: undefined;
     })[];
 } & {
     setSelectedFeature(feature?: AnnotationFeature): void;
@@ -586,14 +629,15 @@ export declare function mouseEventsModelFactory(pluginManager: PluginManager, co
     addSeenFeature(feature: AnnotationFeature): void;
     deleteSeenFeature(featureId: string): void;
 } & {
-    readonly featureLayouts: Map<number, [number, string][]>[];
-    getFeatureLayoutPosition(feature: AnnotationFeature): {
-        layoutIndex: number;
-        layoutRow: number;
-        featureRow: number;
-    } | undefined;
+    getCanonicalRefName(assemblyName: string, refSeq: string): string;
+} & {
+    isFeatureDisplayed(feature: AnnotationFeature): boolean;
+} & {
+    readonly layouts: Map<string, Map<string, import("../glyphs/Glyph").Layout>>;
+    getRowForFeature(feature: AnnotationFeature): number | undefined;
+    getFeaturesAtPosition(assemblyName: string, refName: string, row: number, bp: number): AnnotationFeature[];
 } & {
-    readonly highestRow: number;
+    highestRow(assemblyName: string): number;
 } & {
     afterAttach(): void;
 } & {
@@ -602,7 +646,8 @@ export declare function mouseEventsModelFactory(pluginManager: PluginManager, co
     collaboratorCanvas: HTMLCanvasElement | null;
     theme: import("@mui/material").Theme;
 } & {
-    readonly featuresHeight: number;
+    featuresHeight(assemblyName: string): number;
+    readonly canvasPatterns: Record<"forward" | "backward", CanvasPattern | null>;
 } & {
     toggleShown(): void;
     setDetailsHeight(newHeight: number): void;
@@ -623,6 +668,7 @@ export declare function mouseEventsModelFactory(pluginManager: PluginManager, co
     cursor: CSSProperties["cursor"] | undefined;
 } & {
     getMousePosition(event: React.MouseEvent): MousePosition;
+    getFeaturesAtMousePosition(mousePosition: MousePosition): AnnotationFeature[];
 } & {
     continueDrag(mousePosition: MousePosition, event: CanvasMouseEvent): void;
     setDragging(dragInfo?: {
@@ -640,12 +686,12 @@ export declare function mouseEventsModelFactory(pluginManager: PluginManager, co
 } & {
     contextMenuItems(event: React.MouseEvent<HTMLDivElement>): MenuItem[];
 } & {
-    startDrag(mousePosition: MousePositionWithFeature, feature: AnnotationFeature, edge: Edge, shrinkParent?: boolean): void;
+    startDrag(mousePosition: MousePosition, feature: AnnotationFeature, edge: Edge, shrinkParent?: boolean): void;
     endDrag(): void;
 } & {
     onMouseDown(event: CanvasMouseEvent): void;
     onMouseMove(event: CanvasMouseEvent): void;
-    onMouseLeave(event: CanvasMouseEvent): void;
+    onMouseLeave(_event: CanvasMouseEvent): void;
     onMouseUp(event: CanvasMouseEvent): void;
 } & {
     afterAttach(): void;

package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts.map

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package/dist/LinearApolloDisplay/stateModel/rendering.d.ts

@@ -23,7 +23,6 @@ export declare function renderingModelFactory(pluginManager: PluginManager, conf
     apolloRowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
     detailsMinHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
     detailsHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
-    lastRowTooltipBufferHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
     isShown: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     filteredTranscripts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
 }, {
@@ -252,6 +251,22 @@ export declare function renderingModelFactory(pluginManager: PluginManager, conf
             type?: undefined;
             checked?: undefined;
         })[];
+        icon?: undefined;
+        onClick?: undefined;
+    } | {
+        label: string;
+        icon: typeof import("../../components").Export;
+        onClick: () => void;
+        type?: undefined;
+        subMenu?: undefined;
+    } | {
+        label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
+        onClick: () => void;
+        type?: undefined;
+        subMenu?: undefined;
     })[];
 } & {
     setSelectedFeature(feature?: import("@apollo-annotation/mst").AnnotationFeature): void;
@@ -267,14 +282,15 @@ export declare function renderingModelFactory(pluginManager: PluginManager, conf
     addSeenFeature(feature: import("@apollo-annotation/mst").AnnotationFeature): void;
     deleteSeenFeature(featureId: string): void;
 } & {
-    readonly featureLayouts: Map<number, [number, string][]>[];
-    getFeatureLayoutPosition(feature: import("@apollo-annotation/mst").AnnotationFeature): {
-        layoutIndex: number;
-        layoutRow: number;
-        featureRow: number;
-    } | undefined;
+    getCanonicalRefName(assemblyName: string, refSeq: string): string;
+} & {
+    isFeatureDisplayed(feature: import("@apollo-annotation/mst").AnnotationFeature): boolean;
+} & {
+    readonly layouts: Map<string, Map<string, import("../glyphs/Glyph").Layout>>;
+    getRowForFeature(feature: import("@apollo-annotation/mst").AnnotationFeature): number | undefined;
+    getFeaturesAtPosition(assemblyName: string, refName: string, row: number, bp: number): import("@apollo-annotation/mst").AnnotationFeature[];
 } & {
-    readonly highestRow: number;
+    highestRow(assemblyName: string): number;
 } & {
     afterAttach(): void;
 } & {
@@ -283,7 +299,8 @@ export declare function renderingModelFactory(pluginManager: PluginManager, conf
     collaboratorCanvas: HTMLCanvasElement | null;
     theme: Theme;
 } & {
-    readonly featuresHeight: number;
+    featuresHeight(assemblyName: string): number;
+    readonly canvasPatterns: Record<"forward" | "backward", CanvasPattern | null>;
 } & {
     toggleShown(): void;
     setDetailsHeight(newHeight: number): void;

package/dist/LinearApolloDisplay/stateModel/rendering.d.ts.map

@@ -1 +1 @@
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package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts

@@ -204,6 +204,12 @@ export declare function baseModelFactory(_pluginManager: PluginManager, configSc
     }[];
     regionCannotBeRendered(): "Zoom in to see sequence" | undefined;
 } & {
+    readonly expandedRegions: {
+        assemblyName: string;
+        refName: string;
+        start: number;
+        end: number;
+    }[];
     readonly apolloInternetAccount: ApolloInternetAccountModel | undefined;
     readonly changeManager: import("../../ChangeManager").ChangeManager;
     getAssemblyId(assemblyName: string): string;

package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"base.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloReferenceSequenceDisplay/stateModel/base.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,aAAa,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EACL,KAAK,0BAA0B,EAGhC,MAAM,6BAA6B,CAAA;AAUpC,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,oCAAoC,CAAA;AAG/E,OAAO,KAAK,EAAE,0BAA0B,EAAE,MAAM,mCAAmC,CAAA;AACnF,OAAO,KAAK,EAAE,kBAAkB,EAAE,cAAc,EAAE,MAAM,eAAe,CAAA;AAKvE,wBAAgB,gBAAgB,CAC9B,cAAc,EAAE,aAAa,EAC7B,YAAY,EAAE,0BAA0B;eA5BzC,0BAA0B,wBAAwB,0BACvC;iBACV,0BAA0B;0BAErB,0BAA0B,gBACnB,0BAEX;;;;;;;;;;;;;;;;;;;mBAQgC,wCAAwC;;;;mBAEE,0BACtD,wBAER,0BAA0B;uBAAsC,0BAC1D,wBAAwB,0BAA0B;yBAG9D,0BAEH;kCACuB,0BACP,gBAAgB,0BAEtB;;;;;kBAGiB,0BACjC,yBAAyB,0BACJ;0BAET,CAAC;kBACJ,CAAC;;;;;;;mBASM,wCAAwC;;;;mBAM5C,0BAAmB,wBAEvB,0BAEF;uBAEO,0BACQ,wBAAwB,0BAA0B;yBAItD,0BACL;kCAEA,0BACI,gBAAgB,0BAA0B;;;;;kBAK9C,0BACJ,yBACI,0BACZ;;;iCAKW,oBAAqB;;;;;;;;;;;mBAWlB,wCACD;;;;;;;;;;2BASI,wCACV;;;;2BAIM,0BACF,wBAAwB,0BAA0B;+BAEvD,0BACc,wBACZ,0BAAkB;iCAElB,0BAAoB;0CAElB,0BAAyB,gBAAgB,0BACjD;;;;;0BAMI,0BACgB,yBAAyB,0BAC/B;kCACN,CAAF;0BAED,CAAC;;;;;;;2BAWF,wCACH;;;;2BAKG,0BACc,wBACZ,0BAAuB;+BACQ,0BACvC,wBAAyB,0BAErB;iCACsC,0BAEpC;0CACkC,0BAElC,gBAAgB,0BACH;;;;;0BAOoB,0BAA0B,yBAChD,0BACO;;;yCAKR,oBACP;;;;mBAIc,0BACvB,wBACgB,0BACN;uBACqB,0BACpB,wBACO,0BAAO;yBAEL,0BAAe;kCAGnB,0BACJ,gBAAgB,0BAC3B;;;;;;;;;;;2BAiBiB,wCACoB;;;;2BAKI,0BACtC,wBAAwB,0BAA0B;+BAG1C,0BACU,wBAAwB,0BAC9C;iCAIM,0BAGM;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;kCAAsD,CAAC;0BAAwC,CAAC;;;;;;;2BAAkQ,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;;;yCAA6H,oBAAqB;;;;kBAA8K,0BAA0B,yBAAyB,0BAA0B;;kCAA6D,qCAAa;;;;;;;;;;;;;kBAtK3lE,qBAAqB;;;sBAQ5B,kBAAkB;;;;;;;;;oCAqCnD,0BAA0B,GAAG,SAAS;;gCAMjB,MAAM;;;;;;;4BA4BV,MAAM;6BAGL,MAAM;2BAIR,MAAM;;;;;;;;;;;;;;;;;yGA+ElC"}
+{"version":3,"file":"base.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloReferenceSequenceDisplay/stateModel/base.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,aAAa,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EACL,KAAK,0BAA0B,EAGhC,MAAM,6BAA6B,CAAA;AAWpC,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,oCAAoC,CAAA;AAG/E,OAAO,KAAK,EAAE,0BAA0B,EAAE,MAAM,mCAAmC,CAAA;AACnF,OAAO,KAAK,EAAE,kBAAkB,EAAE,cAAc,EAAE,MAAM,eAAe,CAAA;AAKvE,wBAAgB,gBAAgB,CAC9B,cAAc,EAAE,aAAa,EAC7B,YAAY,EAAE,0BAA0B;eA7BzC,0BAA0B,wBAAwB,0BACvC;iBACV,0BAA0B;0BAErB,0BAA0B,gBACnB,0BAEX;;;;;;;;;;;;;;;;;;;mBASiB,wCAAwC;;;;mBAEE,0BACtD,wBAER,0BAA0B;uBAAsC,0BAC1D,wBAAwB,0BAA0B;yBACV,0BAE1B;kCAGN,0BACP,gBAAgB,0BAEtB;;;;;kBAGiB,0BAA0B,yBAClC,0BACJ;0BACkB,CAAC;kBACK,CAAC;;;;;;;mBAUzB,wCAAmC;;;;mBAKR,0BACjB,wBAAwB,0BAE9B;uBAGY,0BAEhB,wBAAwB,0BAA0B;yBAIlD,0BAAsB;kCAEtB,0BAEL,gBAAgB,0BAA0B;;;;;kBAIO,0BAC/B,yBACD,0BACK;;;iCAKjB,oBACW;;;;;;;;;;;mBAUgB,wCACtB;;;;;;;;;;2BASM,wCAGb;;;;2BAKY,0BACf,wBAAwB,0BACV;+BACP,0BAAqB,wBAAwB,0BACjC;iCAC6C,0BAEzD;0CACE,0BACG,gBACL,0BAAyB;;;;;0BAKrB,0BACF,yBAAyB,0BAA0B;kCAGvD,CAAH;0BACK,CAAR;;;;;;;2BAKQ,wCAEF;;;;2BAKU,0BAA0B,wBACjC,0BAA0B;+BACjB,0BAEf,wBACK,0BAAwB;iCAEV,0BACR;0CAIR,0BAEH,gBAAiB,0BACD;;;;;0BAMb,0BACa,yBACX,0BAAuB;;;yCAIxB,oBAAqB;;;;mBAMV,0BACH,wBAAwB,0BAGtC;uBACe,0BAA0B,wBACnC,0BACW;yBACmC,0BAC/C;kCAEM,0BACM,gBACJ,0BAAe;;;;;;;;;;;2BAYF,wCACI;;;;2BAMC,0BAC3B,wBAAwB,0BACV;+BACK,0BACT,wBAAwB,0BACpB;iCAKX,0BAGH;0CAGK,0BACC,gBACC,0BACE;;;;;0BAK4B,0BACvC,yBAAyB,0BAA0B;kCAG1C,CAAD;0BAC0B,CAAC;;;;;;;2BAQsG,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;;;yCAA6H,oBAAqB;;;;kBAA8K,0BAA0B,yBAAyB,0BAA0B;;kCAA6D,qCAAa;;;;;;;;;;;;;kBAvLv9C,qBAAqB;;;sBAQ5B,kBAAkB;;;;;;;;;;;;;;;oCAsDnD,0BAA0B,GAAG,SAAS;;gCAMjB,MAAM;;;;;;;4BA4BV,MAAM;6BAGL,MAAM;2BAIR,MAAM;;;;;;;;;;;;;;;;;yGA+ElC"}

package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts

@@ -201,6 +201,12 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
     }[];
     regionCannotBeRendered(): "Zoom in to see sequence" | undefined;
 } & {
+    readonly expandedRegions: {
+        assemblyName: string;
+        refName: string;
+        start: number;
+        end: number;
+    }[];
     readonly apolloInternetAccount: import("../../ApolloInternetAccount/model").ApolloInternetAccountModel | undefined;
     readonly changeManager: import("../../ChangeManager").ChangeManager;
     getAssemblyId(assemblyName: string): string;

package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloReferenceSequenceDisplay/stateModel/index.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,aAAa,MAAM,6BAA6B,CAAA;AAC5D,OAAO,KAAK,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAA;AAC7E,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,0BAA0B,CAAA;AAIxD,wBAAgB,iBAAiB,CAC/B,aAAa,EAAE,aAAa,EAC5B,YAAY,EAAE,0BAA0B;eAJD,0BAE3B,wBACX,0BAA0B;iBAG1B,0BAA0B;0BAE3B,0BAD0B,gBAAgB,0BAChC;;;;;;;;;;;;;;;;;;;mBASoD,wCAC1C;;;;mBAE+B,0BAC5C,wBAAwB,0BAA0B;uBAAsC,0BAA0B,wBAAwB,0BAA0B;yBAA8D,0BAA0B;kCAAyD,0BAA0B,gBAAgB,0BAA0B;;;;;kBAAwK,0BAA0B,yBAAyB,0BAA0B;0BAA8C,CAAC;kBAAgC,CAAC;;;;;;;mBAA0M,wCAAwC;;;;mBAAyJ,0BAA0B,wBAAwB,0BAA0B;uBAAsC,0BAA0B,wBAAwB,0BAA0B;yBAA8D,0BAA0B;kCAAyD,0BAA0B,gBAAgB,0BAA0B;;;;;kBAAwK,0BAA0B,yBAAyB,0BAA0B;;;iCAAqG,oBAAqB;;;;;;;;;;;mBAAsU,wCAAwC;;;;;;;;;;2BAAqX,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;kCAAsD,CAAC;0BAAwC,CAAC;;;;;;;2BAAkQ,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;;;yCAA6H,oBAAqB;;;;mBAA+K,0BAA0B,wBAAwB,0BAA0B;uBAAsC,0BAA0B,wBAAwB,0BAA0B;yBAA8D,0BAA0B;kCAAyD,0BAA0B,gBAAgB,0BAA0B;;;;;;;;;;;2BAAqY,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;kCAAsD,CAAC;0BAAwC,CAAC;;;;;;;2BAAkQ,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;;;yCAA6H,oBAAqB;;;;kBAA8K,0BAA0B,yBAAyB,0BAA0B;;kCAA6D,qCAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yGAV98Q;AAED,MAAM,MAAM,8CAA8C,GAAG,UAAU,CACrE,OAAO,iBAAiB,CACzB,CAAA;AAID,MAAM,WAAW,oCACf,SAAQ,QAAQ,CAAC,8CAA8C,CAAC;CAAG"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloReferenceSequenceDisplay/stateModel/index.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,aAAa,MAAM,6BAA6B,CAAA;AAC5D,OAAO,KAAK,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAA;AAC7E,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,0BAA0B,CAAA;AAIxD,wBAAgB,iBAAiB,CAC/B,aAAa,EAAE,aAAa,EAC5B,YAAY,EAAE,0BAA0B;eAJD,0BAE3B,wBACX,0BAA0B;iBAG1B,0BAA0B;0BAE3B,0BAD0B,gBAAgB,0BAChC;;;;;;;;;;;;;;;;;;;mBASoD,wCAC1C;;;;mBAE+B,0BAC5C,wBAAwB,0BAA0B;uBAAsC,0BAA0B,wBAAwB,0BAA0B;yBAA8D,0BAA0B;kCAAyD,0BAA0B,gBAAgB,0BAA0B;;;;;kBAAwK,0BAA0B,yBAAyB,0BAA0B;0BAA8C,CAAC;kBAAgC,CAAC;;;;;;;mBAA0M,wCAAwC;;;;mBAAyJ,0BAA0B,wBAAwB,0BAA0B;uBAAsC,0BAA0B,wBAAwB,0BAA0B;yBAA8D,0BAA0B;kCAAyD,0BAA0B,gBAAgB,0BAA0B;;;;;kBAAwK,0BAA0B,yBAAyB,0BAA0B;;;iCAAqG,oBAAqB;;;;;;;;;;;mBAAsU,wCAAwC;;;;;;;;;;2BAAqX,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;kCAAsD,CAAC;0BAAwC,CAAC;;;;;;;2BAAkQ,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;;;yCAA6H,oBAAqB;;;;mBAA+K,0BAA0B,wBAAwB,0BAA0B;uBAAsC,0BAA0B,wBAAwB,0BAA0B;yBAA8D,0BAA0B;kCAAyD,0BAA0B,gBAAgB,0BAA0B;;;;;;;;;;;2BAAqY,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;kCAAsD,CAAC;0BAAwC,CAAC;;;;;;;2BAAkQ,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;;;yCAA6H,oBAAqB;;;;kBAA8K,0BAA0B,yBAAyB,0BAA0B;;kCAA6D,qCAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yGAV98Q;AAED,MAAM,MAAM,8CAA8C,GAAG,UAAU,CACrE,OAAO,iBAAiB,CACzB,CAAA;AAID,MAAM,WAAW,oCACf,SAAQ,QAAQ,CAAC,8CAA8C,CAAC;CAAG"}

package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts

@@ -202,6 +202,12 @@ export declare function renderingModelFactory(pluginManager: PluginManager, conf
     }[];
     regionCannotBeRendered(): "Zoom in to see sequence" | undefined;
 } & {
+    readonly expandedRegions: {
+        assemblyName: string;
+        refName: string;
+        start: number;
+        end: number;
+    }[];
     readonly apolloInternetAccount: import("../../ApolloInternetAccount/model").ApolloInternetAccountModel | undefined;
     readonly changeManager: import("../../ChangeManager").ChangeManager;
     getAssemblyId(assemblyName: string): string;

package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"rendering.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloReferenceSequenceDisplay/stateModel/rendering.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,aAAa,MAAM,6BAA6B,CAAA;AAC5D,OAAO,KAAK,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAA;AAC7E,OAAO,EAAE,KAAK,QAAQ,EAAe,MAAM,0BAA0B,CAAA;AACrE,OAAO,EAAE,KAAK,KAAK,EAAe,MAAM,eAAe,CAAA;AAQvD,wBAAgB,qBAAqB,CACnC,aAAa,EAAE,aAAa,EAC5B,YAAY,EAAE,0BAA0B;eAXR,0BAA0B,wBAC9C,0BAA0B;iBAGjC,0BAAyB;0BACZ,0BAA0B,gBAE1C,0BAA0B;;;;;;;;;;;;;;;;;;;mBAY1B,wCAAqC;;;;mBAIiB,0BACrC,wBAEZ,0BACA;uBAAsC,0BAClC,wBACP,0BACW;yBACL,0BAA0B;kCAG3B,0BAEV,gBAAgB,0BAEjB;;;;;kBAOgB,0BACL,yBACK,0BAAa;0BAEb,CAAP;kBACO,CAAC;;;;;;;mBASH,wCAA4B;;;;mBAS5B,0BAHe,wBAAwB,0BACjD;uBAAsC,0BAA0B,wBACnD,0BAAyB;yBAEnB,0BACN;kCAGD,0BAAU,gBACV,0BACT;;;;;kBAMa,0BAAyB,yBAAyB,0BAE/D;;;iCAKe,oBAAqB;;;;;;;;;;;mBASZ,wCAExB;;;;;;;;;;2BAeS,wCAGT;;;;2BAIyB,0BAA0B,wBAG5C,0BAFmB;+BAEnB,0BADe,wBACf,0BAAiB;iCAEJ,0BACV;0CAEA,0BACT,gBACQ,0BACd;;;;;0BAOU,0BACD,yBAGP,0BAGe;kCAAsD,CAAC;0BAGtE,CAAC;;;;;;;2BAIgB,wCAAwC;;;;2BAC+G,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;;;yCAA6H,oBAAqB;;;;mBAA+K,0BAA0B,wBAAwB,0BAA0B;uBAAsC,0BAA0B,wBAAwB,0BAA0B;yBAA8D,0BAA0B;kCAAyD,0BAA0B,gBAAgB,0BAA0B;;;;;;;;;;;2BAAqY,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;kCAAsD,CAAC;0BAAwC,CAAC;;;;;;;2BAAkQ,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;;;yCAA6H,oBAAqB;;;;kBAA8K,0BAA0B,yBAAyB,0BAA0B;;kCAA6D,qCAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;oBApI1jJ,iBAAiB,GAAG,IAAI;2BACjB,iBAAiB,GAAG,IAAI;;;8BAI7B,iBAAiB,GAAG,IAAI;qCAGjB,iBAAiB,GAAG,IAAI;oBAGzC,KAAK;;yGA+G1B;AAED,MAAM,MAAM,kDAAkD,GAAG,UAAU,CACzE,OAAO,qBAAqB,CAC7B,CAAA;AAID,MAAM,WAAW,6CACf,SAAQ,QAAQ,CAAC,kDAAkD,CAAC;CAAG"}

package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"LinearApolloSixFrameDisplay.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.tsx"],"names":[],"mappings":"AAwBA,OAAO,KAAK,EAAE,2BAA2B,IAAI,4BAA4B,EAAE,MAAM,eAAe,CAAA;AAIhG,UAAU,gCAAgC;IACxC,KAAK,EAAE,4BAA4B,CAAA;CACpC;AAED,eAAO,MAAM,2BAA2B,UAE7B,gCAAgC,wEAsQ1C,CAAA"}
+{"version":3,"file":"LinearApolloSixFrameDisplay.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.tsx"],"names":[],"mappings":"AAyBA,OAAO,KAAK,EAAE,2BAA2B,IAAI,4BAA4B,EAAE,MAAM,eAAe,CAAA;AAIhG,UAAU,gCAAgC;IACxC,KAAK,EAAE,4BAA4B,CAAA;CACpC;AAED,eAAO,MAAM,2BAA2B,UAE7B,gCAAgC,wEA0Q1C,CAAA"}

package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"GeneGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.ts"],"names":[],"mappings":"AA0CA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,SAAS,CAAA;AA28BpC,eAAO,MAAM,SAAS,EAAE,KAWvB,CAAA"}
+{"version":3,"file":"GeneGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.ts"],"names":[],"mappings":"AA0CA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,SAAS,CAAA;AAs8BpC,eAAO,MAAM,SAAS,EAAE,KAWvB,CAAA"}

package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts

@@ -7,7 +7,7 @@ import type { CanvasMouseEvent } from '../types';
 export interface Glyph {
     /** draw the feature's primary rendering on the canvas */
     draw(ctx: CanvasRenderingContext2D, feature: AnnotationFeature, row: number, stateModel: LinearApolloSixFrameDisplayRendering, displayedRegionIndex: number): void;
-    drawHover(display: LinearApolloSixFrameDisplayMouseEvents, overlayCtx: CanvasRenderingContext2D): void;
+    drawOverlay(display: LinearApolloSixFrameDisplayMouseEvents, overlayCtx: CanvasRenderingContext2D): void;
     drawDragPreview(display: LinearApolloSixFrameDisplayMouseEvents, ctx: CanvasRenderingContext2D): void;
     onMouseDown(display: LinearApolloSixFrameDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
     onMouseMove(display: LinearApolloSixFrameDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;

package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts.map

@@ -1 +1 @@
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package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts.map

@@ -1 +1 @@
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package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts.map

@@ -1 +1 @@
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package/dist/OntologyManager/OntologyStore/fulltext.d.ts

@@ -1,5 +1,5 @@
-import type { TextIndexFieldDefinition } from '..';
 import type { OntologyDBNode } from './indexeddb-schema';
+import type { TextIndexFieldDefinition } from './types';
 import type OntologyStore from '.';
 import type { Transaction } from '.';
 /** special value of jsonPath that gets the IRI (that is, ID) of the node with the configured prefixes applied */

package/dist/OntologyManager/OntologyStore/fulltext.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"fulltext.d.ts","sourceRoot":"","sources":["../../../src/OntologyManager/OntologyStore/fulltext.ts"],"names":[],"mappings":"AAOA,OAAO,KAAK,EAAE,wBAAwB,EAAE,MAAM,IAAI,CAAA;AAGlD,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAA;AAIxD,OAAO,KAAK,aAAa,MAAM,GAAG,CAAA;AAElC,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,GAAG,CAAA;AAEpC,iHAAiH;AACjH,eAAO,MAAM,gBAAgB,iBAAiB,CAAA;AA4B9C;;;IAGI;AACJ,wBAAiB,YAAY,CAC3B,OAAO,EAAE,QAAQ,CAAC,MAAM,CAAC,GACxB,SAAS,CAAC,MAAM,EAAE,IAAI,EAAE,SAAS,CAAC,CAIpC;AAED,wBAAiB,cAAc,CAC7B,MAAM,EAAE,QAAQ,CAAC,OAAO,CAAC,GACxB,SAAS,CAAC,MAAM,EAAE,IAAI,EAAE,SAAS,CAAC,CASpC;AAED,uDAAuD;AACvD,wBAAiB,QAAQ,CACvB,IAAI,EAAE,cAAc,EACpB,SAAS,EAAE,QAAQ,CAAC,MAAM,CAAC,EAC3B,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAC5B,SAAS,CAAC,CAAC,MAAM,EAAE,MAAM,CAAC,EAAE,IAAI,EAAE,SAAS,CAAC,CAS9C;AAED,MAAM,WAAW,KAAK;IACpB,IAAI,EAAE,cAAc,CAAA;IACpB,KAAK,EAAE,wBAAwB,CAAA;IAC/B,GAAG,EAAE,MAAM,CAAA;IACX,KAAK,EAAE,MAAM,CAAA;CACd;AAED,wBAAgB,OAAO,CAAC,KAAK,EAAE,MAAM,GAAG,KAAK,IAAI,KAAK,CAIrD;AAED;;IAEI;AACJ,wBAAsB,UAAU,CAC9B,IAAI,EAAE,aAAa,EACnB,IAAI,EAAE,MAAM,EACZ,EAAE,CAAC,EAAE,WAAW,CAAC,CAAC,OAAO,CAAC,CAAC,EAC3B,MAAM,CAAC,EAAE,WAAW,oBAgErB;AAED,wBAAgB,cAAc,CAC5B,cAAc,EAAE,wBAAwB,EAAE,EAC1C,IAAI,EAAE,cAAc,EACpB,gBAAgB,EAAE,GAAG,CAAC,MAAM,CAAC,EAC7B,UAAU,EAAE,MAAM,EAAE,EACpB,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAC5B,KAAK,EAAE,CAmGT"}
+{"version":3,"file":"fulltext.d.ts","sourceRoot":"","sources":["../../../src/OntologyManager/OntologyStore/fulltext.ts"],"names":[],"mappings":"AAQA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAA;AAExD,OAAO,KAAK,EAAE,wBAAwB,EAAE,MAAM,SAAS,CAAA;AAGvD,OAAO,KAAK,aAAa,MAAM,GAAG,CAAA;AAElC,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,GAAG,CAAA;AAEpC,iHAAiH;AACjH,eAAO,MAAM,gBAAgB,iBAAiB,CAAA;AA4B9C;;;IAGI;AACJ,wBAAiB,YAAY,CAC3B,OAAO,EAAE,QAAQ,CAAC,MAAM,CAAC,GACxB,SAAS,CAAC,MAAM,EAAE,IAAI,EAAE,SAAS,CAAC,CAIpC;AAED,wBAAiB,cAAc,CAC7B,MAAM,EAAE,QAAQ,CAAC,OAAO,CAAC,GACxB,SAAS,CAAC,MAAM,EAAE,IAAI,EAAE,SAAS,CAAC,CASpC;AAED,uDAAuD;AACvD,wBAAiB,QAAQ,CACvB,IAAI,EAAE,cAAc,EACpB,SAAS,EAAE,QAAQ,CAAC,MAAM,CAAC,EAC3B,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAC5B,SAAS,CAAC,CAAC,MAAM,EAAE,MAAM,CAAC,EAAE,IAAI,EAAE,SAAS,CAAC,CAS9C;AAED,MAAM,WAAW,KAAK;IACpB,IAAI,EAAE,cAAc,CAAA;IACpB,KAAK,EAAE,wBAAwB,CAAA;IAC/B,GAAG,EAAE,MAAM,CAAA;IACX,KAAK,EAAE,MAAM,CAAA;CACd;AAED,wBAAgB,OAAO,CAAC,KAAK,EAAE,MAAM,GAAG,KAAK,IAAI,KAAK,CAIrD;AAED;;IAEI;AACJ,wBAAsB,UAAU,CAC9B,IAAI,EAAE,aAAa,EACnB,IAAI,EAAE,MAAM,EACZ,EAAE,CAAC,EAAE,WAAW,CAAC,CAAC,OAAO,CAAC,CAAC,EAC3B,MAAM,CAAC,EAAE,WAAW,oBAgErB;AAED,wBAAgB,cAAc,CAC5B,cAAc,EAAE,wBAAwB,EAAE,EAC1C,IAAI,EAAE,cAAc,EACpB,gBAAgB,EAAE,GAAG,CAAC,MAAM,CAAC,EAC7B,UAAU,EAAE,MAAM,EAAE,EACpB,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAC5B,KAAK,EAAE,CAmGT"}

package/dist/OntologyManager/OntologyStore/index.d.ts

@@ -1,9 +1,9 @@
 import { type BlobLocation, type LocalPathLocation, type UriLocation } from '@jbrowse/core/util';
 import { type IDBPTransaction, type StoreNames } from 'idb/with-async-ittr';
-import { type OntologyClass, type OntologyProperty, type OntologyTerm } from '..';
 import { textSearch } from './fulltext';
 import { type OntologyDB } from './indexeddb-schema';
 import { isDatabaseCurrent, loadOboGraphJson, openDatabase } from './indexeddb-storage';
+import { type OntologyClass, type OntologyProperty, type OntologyTerm } from './types';
 export type SourceLocation = UriLocation | LocalPathLocation | BlobLocation;
 /** type alias for a Transaction on this particular DB schema */
 export type Transaction<TxStores extends ArrayLike<StoreNames<OntologyDB>> = ArrayLike<StoreNames<OntologyDB>>, Mode extends IDBTransactionMode = 'readonly'> = IDBPTransaction<OntologyDB, TxStores, Mode>;
@@ -36,7 +36,7 @@ export default class OntologyStore {
     getTermsByFulltext: typeof textSearch;
     openDatabase: typeof openDatabase;
     isDatabaseCurrent: typeof isDatabaseCurrent;
-    get textIndexFields(): import("..").TextIndexFieldDefinition[];
+    get textIndexFields(): import("./types").TextIndexFieldDefinition[];
     get prefixes(): Map<string, string>;
     readonly DEFAULT_MAX_SEARCH_RESULTS = 100;
     constructor(name: string, version: string, source: SourceLocation, options?: OntologyStoreOptions);