@apollo-annotation/jbrowse-plugin-apollo 0.3.13 → 1.0.0

package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts

@@ -5,7 +5,7 @@ declare global {
     const rpcServer: RpcServer;
 }
 export default class RefNameAliasAdapter extends BaseAdapter implements BaseRefNameAliasAdapter {
-    private refNameAliases;
+    private refNameAliasesP;
     getRefNameAliases(): Promise<RefNameAliases[]>;
     freeResources(): void;
 }

package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ApolloRefNameAliasAdapter.d.ts","sourceRoot":"","sources":["../../src/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.ts"],"names":[],"mappings":"AACA,OAAO,EACL,WAAW,EACX,KAAK,uBAAuB,EAC7B,MAAM,yCAAyC,CAAA;AAChD,OAAO,KAAK,SAAS,MAAM,4BAA4B,CAAA;AAKvD,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,mCAAmC,CAAA;AAEvE,OAAO,CAAC,MAAM,CAAC;IACb,MAAM,SAAS,EAAE,SAAS,CAAA;CAC3B;AAsBD,MAAM,CAAC,OAAO,OAAO,mBACnB,SAAQ,WACR,YAAW,uBAAuB;IAElC,OAAO,CAAC,cAAc,CAA8B;IAE9C,iBAAiB;IAkDvB,aAAa;CAGd"}
+{"version":3,"file":"ApolloRefNameAliasAdapter.d.ts","sourceRoot":"","sources":["../../src/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.ts"],"names":[],"mappings":"AACA,OAAO,EACL,WAAW,EACX,KAAK,uBAAuB,EAC7B,MAAM,yCAAyC,CAAA;AAChD,OAAO,KAAK,SAAS,MAAM,4BAA4B,CAAA;AAKvD,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,mCAAmC,CAAA;AAEvE,OAAO,CAAC,MAAM,CAAC;IACb,MAAM,SAAS,EAAE,SAAS,CAAA;CAC3B;AAsBD,MAAM,CAAC,OAAO,OAAO,mBACnB,SAAQ,WACR,YAAW,uBAAuB;IAElC,OAAO,CAAC,eAAe,CAAuC;IAExD,iBAAiB;IAqDvB,aAAa;CAGd"}

package/dist/BackendDrivers/BackendDriver.d.ts

@@ -1,17 +1,40 @@
-import type { Change, ClientDataStore } from '@apollo-annotation/common';
+import type { Change, SerializedChange } from '@apollo-annotation/common';
 import type { AnnotationFeatureSnapshot, CheckResultSnapshot } from '@apollo-annotation/mst';
 import type { ValidationResultSet } from '@apollo-annotation/shared';
 import type { Assembly } from '@jbrowse/core/assemblyManager/assembly';
 import type { Region } from '@jbrowse/core/util';
 import type { SubmitOpts } from '../ChangeManager';
+import type { ClientDataStoreModel } from '../session/ClientDataStore';
 export interface RefNameAliases {
     refName: string;
     aliases: string[];
-    uniqueId: string;
+    uniqueId?: string;
+}
+export interface ChangeDocument extends SerializedChange {
+    sequence: IDBValidKey;
+    user?: string;
+    createdAt: string;
+    changes?: SerializedChange[];
+}
+export interface GetChangesOpts {
+    page?: number;
+    pageSize?: number;
+    sortField?: string;
+    sortOrder?: 'asc' | 'desc';
+    filters?: {
+        user?: string;
+        typeName?: string;
+        startTime?: string;
+        endTime?: string;
+    };
+}
+export interface GetChangesResult {
+    changes: ChangeDocument[];
+    totalCount: number;
 }
 export declare abstract class BackendDriver {
-    protected clientStore: ClientDataStore;
-    constructor(clientStore: ClientDataStore);
+    protected clientStore: ClientDataStoreModel;
+    constructor(clientStore: ClientDataStoreModel);
     abstract getFeatures(region: Region): Promise<[AnnotationFeatureSnapshot[], CheckResultSnapshot[]]>;
     abstract getSequence(region: Region): Promise<{
         seq: string;
@@ -22,5 +45,7 @@ export declare abstract class BackendDriver {
     abstract getRefNameAliases(assemblyName: string): Promise<RefNameAliases[]>;
     abstract submitChange(change: Change, opts: SubmitOpts): Promise<ValidationResultSet>;
     abstract searchFeatures(term: string, assemblies: string[]): Promise<AnnotationFeatureSnapshot[]>;
+    abstract getChanges(assemblyName: string, opts?: GetChangesOpts): Promise<GetChangesResult>;
+    abstract getCheckResults(assemblyName: string): Promise<CheckResultSnapshot[]>;
 }
 //# sourceMappingURL=BackendDriver.d.ts.map

package/dist/BackendDrivers/BackendDriver.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"BackendDriver.d.ts","sourceRoot":"","sources":["../../src/BackendDrivers/BackendDriver.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAA;AACxE,OAAO,KAAK,EACV,yBAAyB,EACzB,mBAAmB,EACpB,MAAM,wBAAwB,CAAA;AAC/B,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAA;AACpE,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,wCAAwC,CAAA;AACtE,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAA;AAEhD,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAA;AAElD,MAAM,WAAW,cAAc;IAC7B,OAAO,EAAE,MAAM,CAAA;IACf,OAAO,EAAE,MAAM,EAAE,CAAA;IACjB,QAAQ,EAAE,MAAM,CAAA;CACjB;AAED,8BAAsB,aAAa;IACrB,SAAS,CAAC,WAAW,EAAE,eAAe;gBAA5B,WAAW,EAAE,eAAe;IAElD,QAAQ,CAAC,WAAW,CAClB,MAAM,EAAE,MAAM,GACb,OAAO,CAAC,CAAC,yBAAyB,EAAE,EAAE,mBAAmB,EAAE,CAAC,CAAC;IAEhE,QAAQ,CAAC,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC;QAAE,GAAG,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC;IAE9E,QAAQ,CAAC,UAAU,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC;IAE5D,QAAQ,CAAC,aAAa,CAAC,uBAAuB,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE;IAEpE,QAAQ,CAAC,iBAAiB,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,cAAc,EAAE,CAAC;IAE3E,QAAQ,CAAC,YAAY,CACnB,MAAM,EAAE,MAAM,EACd,IAAI,EAAE,UAAU,GACf,OAAO,CAAC,mBAAmB,CAAC;IAE/B,QAAQ,CAAC,cAAc,CACrB,IAAI,EAAE,MAAM,EACZ,UAAU,EAAE,MAAM,EAAE,GACnB,OAAO,CAAC,yBAAyB,EAAE,CAAC;CACxC"}
+{"version":3,"file":"BackendDriver.d.ts","sourceRoot":"","sources":["../../src/BackendDrivers/BackendDriver.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,EAAE,gBAAgB,EAAE,MAAM,2BAA2B,CAAA;AACzE,OAAO,KAAK,EACV,yBAAyB,EACzB,mBAAmB,EACpB,MAAM,wBAAwB,CAAA;AAC/B,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAA;AACpE,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,wCAAwC,CAAA;AACtE,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAA;AAEhD,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAA;AAClD,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,4BAA4B,CAAA;AAEtE,MAAM,WAAW,cAAc;IAC7B,OAAO,EAAE,MAAM,CAAA;IACf,OAAO,EAAE,MAAM,EAAE,CAAA;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAA;CAClB;AAED,MAAM,WAAW,cAAe,SAAQ,gBAAgB;IACtD,QAAQ,EAAE,WAAW,CAAA;IACrB,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,SAAS,EAAE,MAAM,CAAA;IACjB,OAAO,CAAC,EAAE,gBAAgB,EAAE,CAAA;CAC7B;AAED,MAAM,WAAW,cAAc;IAC7B,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,QAAQ,CAAC,EAAE,MAAM,CAAA;IACjB,SAAS,CAAC,EAAE,MAAM,CAAA;IAClB,SAAS,CAAC,EAAE,KAAK,GAAG,MAAM,CAAA;IAC1B,OAAO,CAAC,EAAE;QACR,IAAI,CAAC,EAAE,MAAM,CAAA;QACb,QAAQ,CAAC,EAAE,MAAM,CAAA;QACjB,SAAS,CAAC,EAAE,MAAM,CAAA;QAClB,OAAO,CAAC,EAAE,MAAM,CAAA;KACjB,CAAA;CACF;AAED,MAAM,WAAW,gBAAgB;IAC/B,OAAO,EAAE,cAAc,EAAE,CAAA;IACzB,UAAU,EAAE,MAAM,CAAA;CACnB;AAED,8BAAsB,aAAa;IACrB,SAAS,CAAC,WAAW,EAAE,oBAAoB;gBAAjC,WAAW,EAAE,oBAAoB;IAEvD,QAAQ,CAAC,WAAW,CAClB,MAAM,EAAE,MAAM,GACb,OAAO,CAAC,CAAC,yBAAyB,EAAE,EAAE,mBAAmB,EAAE,CAAC,CAAC;IAEhE,QAAQ,CAAC,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC;QAAE,GAAG,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC;IAE9E,QAAQ,CAAC,UAAU,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC;IAE5D,QAAQ,CAAC,aAAa,CAAC,uBAAuB,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE;IAEpE,QAAQ,CAAC,iBAAiB,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,cAAc,EAAE,CAAC;IAE3E,QAAQ,CAAC,YAAY,CACnB,MAAM,EAAE,MAAM,EACd,IAAI,EAAE,UAAU,GACf,OAAO,CAAC,mBAAmB,CAAC;IAE/B,QAAQ,CAAC,cAAc,CACrB,IAAI,EAAE,MAAM,EACZ,UAAU,EAAE,MAAM,EAAE,GACnB,OAAO,CAAC,yBAAyB,EAAE,CAAC;IAEvC,QAAQ,CAAC,UAAU,CACjB,YAAY,EAAE,MAAM,EACpB,IAAI,CAAC,EAAE,cAAc,GACpB,OAAO,CAAC,gBAAgB,CAAC;IAE5B,QAAQ,CAAC,eAAe,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,mBAAmB,EAAE,CAAC;CAC/E"}

package/dist/BackendDrivers/CollaborationServerDriver.d.ts

@@ -5,7 +5,7 @@ import type { BaseInternetAccountModel } from '@jbrowse/core/pluggableElementTyp
 import { type Region } from '@jbrowse/core/util';
 import type { Socket } from 'socket.io-client';
 import { type SubmitOpts } from '../ChangeManager';
-import { BackendDriver, type RefNameAliases } from './BackendDriver';
+import { BackendDriver, type GetChangesOpts, type GetChangesResult, type RefNameAliases } from './BackendDriver';
 export interface ApolloRefSeqResponse {
     _id: string;
     name: string;
@@ -200,6 +200,8 @@ export declare class CollaborationServerDriver extends BackendDriver {
         }>;
         afterCreate(): void;
     }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>)[];
+    getChanges(assemblyName: string, opts?: GetChangesOpts): Promise<GetChangesResult>;
+    getCheckResults(assemblyName: string): Promise<CheckResultSnapshot[]>;
     submitChange(change: Change | AssemblySpecificChange, opts?: SubmitOpts): Promise<ValidationResultSet>;
 }
 export {};

package/dist/BackendDrivers/CollaborationServerDriver.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"CollaborationServerDriver.d.ts","sourceRoot":"","sources":["../../src/BackendDrivers/CollaborationServerDriver.ts"],"names":[],"mappings":"AAMA,OAAO,EACL,KAAK,sBAAsB,EAC3B,MAAM,EAGP,MAAM,2BAA2B,CAAA;AAClC,OAAO,KAAK,EACV,yBAAyB,EAEzB,mBAAmB,EACpB,MAAM,wBAAwB,CAAA;AAC/B,OAAO,EAEL,mBAAmB,EAEpB,MAAM,2BAA2B,CAAA;AAElC,OAAO,KAAK,EAAE,wBAAwB,EAAE,MAAM,qCAAqC,CAAA;AACnF,OAAO,EAAE,KAAK,MAAM,EAAc,MAAM,oBAAoB,CAAA;AAC5D,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AAE9C,OAAO,EAAiB,KAAK,UAAU,EAAE,MAAM,kBAAkB,CAAA;AAGjE,OAAO,EAAE,aAAa,EAAE,KAAK,cAAc,EAAE,MAAM,iBAAiB,CAAA;AAEpE,MAAM,WAAW,oBAAoB;IACnC,GAAG,EAAE,MAAM,CAAA;IACX,IAAI,EAAE,MAAM,CAAA;IACZ,WAAW,CAAC,EAAE,MAAM,CAAA;IACpB,OAAO,EAAE,MAAM,EAAE,CAAA;IACjB,MAAM,EAAE,MAAM,CAAA;IACd,QAAQ,EAAE,MAAM,CAAA;CACjB;AAED,UAAU,MAAM;IACd,OAAO,EAAE,MAAM,CAAA;IACf,EAAE,EAAE,MAAM,CAAA;IACV,OAAO,EAAE,MAAM,EAAE,CAAA;CAClB;AAED,KAAK,SAAS,GAAG,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAA;AAEpC,MAAM,WAAW,qBAAsB,SAAQ,wBAAwB;IACrE,OAAO,EAAE,MAAM,CAAA;IACf,MAAM,EAAE,MAAM,CAAA;IACd,2BAA2B,CAAC,cAAc,EAAE,MAAM,GAAG,IAAI,CAAA;IACzD,iBAAiB,IAAI,IAAI,CAAA;CAC1B;AAED,qBAAa,yBAA0B,SAAQ,aAAa;IAC1D,OAAO,CAAC,QAAQ,CAAqC;IAErD,OAAO,CAAC,UAAU,CAA+B;YAEnC,KAAK;IAYb,cAAc,CAAC,IAAI,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE;IAyBvD;;;;OAIG;IACG,WAAW,CAAC,MAAM,EAAE,MAAM;IAyChC;;;;;OAKG;IACH,WAAW,CACT,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE,MAAM,EACd,eAAe,EAAE,qBAAqB;IA4BxC,OAAO,CAAC,iBAAiB;IAczB;;;;OAIG;IACG,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC;QAAE,GAAG,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC;YA2D7D,gBAAgB;IA0BxB,gBAAgB,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,SAAS,CAAC;IA4C1D,iBAAiB,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,cAAc,EAAE,CAAC;IASlE,WAAW,CAAC,YAAY,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM;IASjD,UAAU,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC;IAqCzD,aAAa,CAAC,iBAAiB,CAAC,EAAE,MAAM;;;;;gCArWf,wCAAe;;;;;0BAO7B,oBAEZ;;;;;;;;;iCAgBI,wCAAe;;;;;;;;;;;;;;;;;;;;4BA+BhB,oBACO;;;;8BAIP,oBACA;;;mCAE0B,oBAEvB;;;;uCAM2B,oBAC9B;;;;;;;;2BAQE,yCAAiC,+BAA+B,wCAEpE;;;wBAES,yCACe;;;;;wBAKF,yCACQ;;;;;8BAhGlB,0BAAyB,gBAAgB,0BAA0B;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;IA6XzE,YAAY,CAChB,MAAM,EAAE,MAAM,GAAG,sBAAsB,EACvC,IAAI,GAAE,UAAe;CA2BxB"}
+{"version":3,"file":"CollaborationServerDriver.d.ts","sourceRoot":"","sources":["../../src/BackendDrivers/CollaborationServerDriver.ts"],"names":[],"mappings":"AAMA,OAAO,EACL,KAAK,sBAAsB,EAC3B,MAAM,EAGP,MAAM,2BAA2B,CAAA;AAClC,OAAO,KAAK,EACV,yBAAyB,EAEzB,mBAAmB,EACpB,MAAM,wBAAwB,CAAA;AAC/B,OAAO,EAEL,mBAAmB,EAEpB,MAAM,2BAA2B,CAAA;AAElC,OAAO,KAAK,EAAE,wBAAwB,EAAE,MAAM,qCAAqC,CAAA;AACnF,OAAO,EAAE,KAAK,MAAM,EAAc,MAAM,oBAAoB,CAAA;AAC5D,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AAE9C,OAAO,EAAiB,KAAK,UAAU,EAAE,MAAM,kBAAkB,CAAA;AAGjE,OAAO,EACL,aAAa,EACb,KAAK,cAAc,EACnB,KAAK,gBAAgB,EACrB,KAAK,cAAc,EACpB,MAAM,iBAAiB,CAAA;AAExB,MAAM,WAAW,oBAAoB;IACnC,GAAG,EAAE,MAAM,CAAA;IACX,IAAI,EAAE,MAAM,CAAA;IACZ,WAAW,CAAC,EAAE,MAAM,CAAA;IACpB,OAAO,EAAE,MAAM,EAAE,CAAA;IACjB,MAAM,EAAE,MAAM,CAAA;IACd,QAAQ,EAAE,MAAM,CAAA;CACjB;AAED,UAAU,MAAM;IACd,OAAO,EAAE,MAAM,CAAA;IACf,EAAE,EAAE,MAAM,CAAA;IACV,OAAO,EAAE,MAAM,EAAE,CAAA;CAClB;AAED,KAAK,SAAS,GAAG,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAA;AAEpC,MAAM,WAAW,qBAAsB,SAAQ,wBAAwB;IACrE,OAAO,EAAE,MAAM,CAAA;IACf,MAAM,EAAE,MAAM,CAAA;IACd,2BAA2B,CAAC,cAAc,EAAE,MAAM,GAAG,IAAI,CAAA;IACzD,iBAAiB,IAAI,IAAI,CAAA;CAC1B;AAED,qBAAa,yBAA0B,SAAQ,aAAa;IAC1D,OAAO,CAAC,QAAQ,CAAqC;IAErD,OAAO,CAAC,UAAU,CAA+B;YAEnC,KAAK;IAYb,cAAc,CAAC,IAAI,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE;IAuBvD;;;;OAIG;IACG,WAAW,CAAC,MAAM,EAAE,MAAM;IAuChC;;;;;OAKG;IACH,WAAW,CACT,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE,MAAM,EACd,eAAe,EAAE,qBAAqB;IA4BxC,OAAO,CAAC,iBAAiB;IAczB;;;;OAIG;IACG,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC;QAAE,GAAG,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC;YAyD7D,gBAAgB;IA0BxB,gBAAgB,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,SAAS,CAAC;IA0C1D,iBAAiB,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,cAAc,EAAE,CAAC;IASlE,WAAW,CAAC,YAAY,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM;IASjD,UAAU,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC;IAmCzD,aAAa,CAAC,iBAAiB,CAAC,EAAE,MAAM;;;;;gCAhWf,wCAAe;;;;;0BAU5B,oBACd;;;;;;;;;iCAgB6D,wCAC3D;;;;;;;;;;;;;;;;;;;;4BA6BmC,oBAElC;;;;8BAI4C,oBAClC;;;mCAGE,oBACf;;;;uCAOkB,oBAA0B;;;;;;;;2BAQrC,yCACiB,+BAA+B,wCAAe;;;wBAG3B,yCAEhC;;;;;wBAIK,yCAEF;;;;;8BAnGA,0BAAyB,gBAAgB,0BAA0B;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;IAwXzE,UAAU,CACd,YAAY,EAAE,MAAM,EACpB,IAAI,GAAE,cAAmB,GACxB,OAAO,CAAC,gBAAgB,CAAC;IAyCtB,eAAe,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,mBAAmB,EAAE,CAAC;IAgBrE,YAAY,CAChB,MAAM,EAAE,MAAM,GAAG,sBAAsB,EACvC,IAAI,GAAE,UAAe;CA2BxB"}

package/dist/BackendDrivers/LocalDriver/LocalDriver.d.ts

@@ -0,0 +1,22 @@
+import { type Change } from '@apollo-annotation/common';
+import type { AnnotationFeatureSnapshot, CheckResultSnapshot } from '@apollo-annotation/mst';
+import { ValidationResultSet } from '@apollo-annotation/shared';
+import type { Assembly } from '@jbrowse/core/assemblyManager/assembly';
+import { type Region } from '@jbrowse/core/util';
+import type { SubmitOpts } from '../../ChangeManager';
+import { BackendDriver, type GetChangesOpts, type GetChangesResult, type RefNameAliases } from '../BackendDriver';
+export declare class LocalDriver extends BackendDriver {
+    getFeatures(region: Region): Promise<[AnnotationFeatureSnapshot[], CheckResultSnapshot[]]>;
+    getSequence(region: Region): Promise<{
+        seq: string;
+        refSeq: string;
+    }>;
+    getRegions(assemblyName: string): Promise<Region[]>;
+    getAssemblies(internetAccountConfigId?: string): Assembly[];
+    getRefNameAliases(assemblyName: string): Promise<RefNameAliases[]>;
+    submitChange(change: Change, opts: SubmitOpts): Promise<ValidationResultSet>;
+    searchFeatures(term: string, assemblies: string[]): Promise<AnnotationFeatureSnapshot[]>;
+    getCheckResults(assemblyName: string): Promise<CheckResultSnapshot[]>;
+    getChanges(assemblyName: string, opts?: GetChangesOpts): Promise<GetChangesResult>;
+}
+//# sourceMappingURL=LocalDriver.d.ts.map

package/dist/BackendDrivers/LocalDriver/LocalDriver.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"LocalDriver.d.ts","sourceRoot":"","sources":["../../../src/BackendDrivers/LocalDriver/LocalDriver.ts"],"names":[],"mappings":"AAEA,OAAO,EACL,KAAK,MAAM,EAIZ,MAAM,2BAA2B,CAAA;AAClC,OAAO,KAAK,EAEV,yBAAyB,EACzB,mBAAmB,EACpB,MAAM,wBAAwB,CAAA;AAC/B,OAAO,EACL,mBAAmB,EAEpB,MAAM,2BAA2B,CAAA;AAClC,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,wCAAwC,CAAA;AAKtE,OAAO,EAEL,KAAK,MAAM,EAGZ,MAAM,oBAAoB,CAAA;AAG3B,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAA;AACrD,OAAO,EACL,aAAa,EAEb,KAAK,cAAc,EACnB,KAAK,gBAAgB,EACrB,KAAK,cAAc,EACpB,MAAM,kBAAkB,CAAA;AAIzB,qBAAa,WAAY,SAAQ,aAAa;IACtC,WAAW,CACf,MAAM,EAAE,MAAM,GACb,OAAO,CAAC,CAAC,yBAAyB,EAAE,EAAE,mBAAmB,EAAE,CAAC,CAAC;IA6B1D,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC;QAAE,GAAG,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC;IAgCrE,UAAU,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC;IAczD,aAAa,CAAC,uBAAuB,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE;IAIrD,iBAAiB,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,cAAc,EAAE,CAAC;IA+BlE,YAAY,CAChB,MAAM,EAAE,MAAM,EACd,IAAI,EAAE,UAAU,GACf,OAAO,CAAC,mBAAmB,CAAC;IAgIzB,cAAc,CAClB,IAAI,EAAE,MAAM,EACZ,UAAU,EAAE,MAAM,EAAE,GACnB,OAAO,CAAC,yBAAyB,EAAE,CAAC;IAIjC,eAAe,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,mBAAmB,EAAE,CAAC;IAerE,UAAU,CACd,YAAY,EAAE,MAAM,EACpB,IAAI,GAAE,cAAmB,GACxB,OAAO,CAAC,gBAAgB,CAAC;CAwD7B"}

package/dist/BackendDrivers/LocalDriver/db.d.ts

@@ -0,0 +1,4 @@
+import { type IDBPDatabase } from 'idb/with-async-ittr';
+export type FeatureDatabase = IDBPDatabase;
+export declare function openDb(assemblyName: string, refNames: string[]): Promise<FeatureDatabase>;
+//# sourceMappingURL=db.d.ts.map

package/dist/BackendDrivers/LocalDriver/db.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"db.d.ts","sourceRoot":"","sources":["../../../src/BackendDrivers/LocalDriver/db.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,YAAY,EAAU,MAAM,qBAAqB,CAAA;AAE/D,MAAM,MAAM,eAAe,GAAG,YAAY,CAAA;AAE1C,wBAAsB,MAAM,CAC1B,YAAY,EAAE,MAAM,EACpB,QAAQ,EAAE,MAAM,EAAE,GACjB,OAAO,CAAC,eAAe,CAAC,CA6B1B"}

package/dist/BackendDrivers/index.d.ts

@@ -1,5 +1,4 @@
 export * from './BackendDriver';
+export * from './LocalDriver/LocalDriver';
 export * from './CollaborationServerDriver';
-export * from './InMemoryFileDriver';
-export * from './DesktopFileDriver';
 //# sourceMappingURL=index.d.ts.map

package/dist/BackendDrivers/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/BackendDrivers/index.ts"],"names":[],"mappings":"AAAA,cAAc,iBAAiB,CAAA;AAC/B,cAAc,6BAA6B,CAAA;AAC3C,cAAc,sBAAsB,CAAA;AACpC,cAAc,qBAAqB,CAAA"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/BackendDrivers/index.ts"],"names":[],"mappings":"AAAA,cAAc,iBAAiB,CAAA;AAC/B,cAAc,2BAA2B,CAAA;AACzC,cAAc,6BAA6B,CAAA"}

package/dist/ChangeManager.d.ts

@@ -1,5 +1,5 @@
-import { type Change, type ClientDataStore } from '@apollo-annotation/common';
-import type { IAnyStateTreeNode } from '@jbrowse/mobx-state-tree';
+import { type Change } from '@apollo-annotation/common';
+import type { ClientDataStoreModel } from './session/ClientDataStore';
 export interface SubmitOpts {
     /** defaults to true */
     submitToBackend?: boolean;
@@ -12,7 +12,7 @@ export interface SubmitOpts {
 }
 export declare class ChangeManager {
     private dataStore;
-    constructor(dataStore: ClientDataStore & IAnyStateTreeNode);
+    constructor(dataStore: ClientDataStoreModel);
     recentChanges: Change[];
     undoneChanges: Change[];
     submit(change: Change, opts?: SubmitOpts): Promise<void>;

package/dist/ChangeManager.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ChangeManager.d.ts","sourceRoot":"","sources":["../src/ChangeManager.ts"],"names":[],"mappings":"AAGA,OAAO,EACL,KAAK,MAAM,EACX,KAAK,eAAe,EAErB,MAAM,2BAA2B,CAAA;AAMlC,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,0BAA0B,CAAA;AAIjE,MAAM,WAAW,UAAU;IACzB,uBAAuB;IACvB,eAAe,CAAC,EAAE,OAAO,CAAA;IACzB,uBAAuB;IACvB,YAAY,CAAC,EAAE,OAAO,CAAA;IACtB,4BAA4B;IAC5B,iBAAiB,CAAC,EAAE,MAAM,CAAA;IAC1B,wBAAwB;IACxB,iBAAiB,CAAC,EAAE,OAAO,CAAA;CAC5B;AAED,qBAAa,aAAa;IACZ,OAAO,CAAC,SAAS;gBAAT,SAAS,EAAE,eAAe,GAAG,iBAAiB;IAElE,aAAa,EAAE,MAAM,EAAE,CAAK;IAC5B,aAAa,EAAE,MAAM,EAAE,CAAK;IAEtB,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,GAAE,UAAe;IAqI5C,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,eAAe,UAAO;IAM3C,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,eAAe,UAAO;IAK3C,cAAc;IAWd,cAAc;CAUrB"}
+{"version":3,"file":"ChangeManager.d.ts","sourceRoot":"","sources":["../src/ChangeManager.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,KAAK,MAAM,EAEZ,MAAM,2BAA2B,CAAA;AAQlC,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,2BAA2B,CAAA;AAGrE,MAAM,WAAW,UAAU;IACzB,uBAAuB;IACvB,eAAe,CAAC,EAAE,OAAO,CAAA;IACzB,uBAAuB;IACvB,YAAY,CAAC,EAAE,OAAO,CAAA;IACtB,4BAA4B;IAC5B,iBAAiB,CAAC,EAAE,MAAM,CAAA;IAC1B,wBAAwB;IACxB,iBAAiB,CAAC,EAAE,OAAO,CAAA;CAC5B;AAED,qBAAa,aAAa;IACZ,OAAO,CAAC,SAAS;gBAAT,SAAS,EAAE,oBAAoB;IAEnD,aAAa,EAAE,MAAM,EAAE,CAAK;IAC5B,aAAa,EAAE,MAAM,EAAE,CAAK;IAEtB,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,GAAE,UAAe;IA0I5C,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,eAAe,UAAO;IAM3C,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,eAAe,UAAO;IAK3C,cAAc;IAWd,cAAc;CAUrB"}

package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts

@@ -1,10 +1,4 @@
-import React from 'react';
 import type { ApolloTranscriptDetailsWidget as ApolloTranscriptDetailsWidgetState } from './model';
-export declare const StyledAccordionSummary: import("@emotion/styled").StyledComponent<import("@mui/material").AccordionSummaryOwnProps & Omit<import("@mui/material").ButtonBaseOwnProps, "classes"> & import("@mui/material/OverridableComponent").CommonProps & Omit<Omit<React.DetailedHTMLProps<React.HTMLAttributes<HTMLDivElement>, HTMLDivElement>, "ref"> & {
-    ref?: ((instance: HTMLDivElement | null) => void | React.DO_NOT_USE_OR_YOU_WILL_BE_FIRED_CALLBACK_REF_RETURN_VALUES[keyof React.DO_NOT_USE_OR_YOU_WILL_BE_FIRED_CALLBACK_REF_RETURN_VALUES]) | React.RefObject<HTMLDivElement> | null | undefined;
-}, "children" | "classes" | "className" | "slots" | "slotProps" | "sx" | "style" | "tabIndex" | "disabled" | "action" | "centerRipple" | "disableRipple" | "disableTouchRipple" | "focusRipple" | "focusVisibleClassName" | "LinkComponent" | "onFocusVisible" | "TouchRippleProps" | "touchRippleRef" | "expandIcon"> & {
-    theme?: import("@emotion/react").Theme;
-}, {}, {}>;
 export declare const ApolloTranscriptDetailsWidget: (props: {
     model: ApolloTranscriptDetailsWidgetState;
 }) => import("react/jsx-runtime").JSX.Element | null;

package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ApolloTranscriptDetailsWidget.d.ts","sourceRoot":"","sources":["../../src/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.tsx"],"names":[],"mappings":"AAmBA,OAAO,KAA8B,MAAM,OAAO,CAAA;AAUlD,OAAO,KAAK,EAAE,6BAA6B,IAAI,kCAAkC,EAAE,MAAM,SAAS,CAAA;AAalG,eAAO,MAAM,sBAAsB;;;;UAOhC,CAAA;AAMH,eAAO,MAAM,6BAA6B,UACA;IACtC,KAAK,EAAE,kCAAkC,CAAA;CAC1C,mDAgOF,CAAA;AACD,eAAe,6BAA6B,CAAA"}
+{"version":3,"file":"ApolloTranscriptDetailsWidget.d.ts","sourceRoot":"","sources":["../../src/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.tsx"],"names":[],"mappings":"AA6BA,OAAO,KAAK,EAAE,6BAA6B,IAAI,kCAAkC,EAAE,MAAM,SAAS,CAAA;AA0BlG,eAAO,MAAM,6BAA6B,UACA;IACtC,KAAK,EAAE,kCAAkC,CAAA;CAC1C,mDAgOF,CAAA;AACD,eAAe,6BAA6B,CAAA"}

package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"TranscriptWidgetEditLocation.d.ts","sourceRoot":"","sources":["../../src/FeatureDetailsWidget/TranscriptWidgetEditLocation.tsx"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,iBAAiB,EAAkB,MAAM,wBAAwB,CAAA;AA2B/E,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AA+DpD,eAAO,MAAM,4BAA4B,6CAMpC;IACD,OAAO,EAAE,iBAAiB,CAAA;IAC1B,OAAO,EAAE,MAAM,CAAA;IACf,OAAO,EAAE,kBAAkB,CAAA;IAC3B,QAAQ,EAAE,MAAM,CAAA;CACjB,mDA8kCF,CAAA"}
+{"version":3,"file":"TranscriptWidgetEditLocation.d.ts","sourceRoot":"","sources":["../../src/FeatureDetailsWidget/TranscriptWidgetEditLocation.tsx"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,iBAAiB,EAAkB,MAAM,wBAAwB,CAAA;AA4B/E,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAuEpD,eAAO,MAAM,4BAA4B,6CAMpC;IACD,OAAO,EAAE,iBAAiB,CAAA;IAC1B,OAAO,EAAE,MAAM,CAAA;IACf,OAAO,EAAE,kBAAkB,CAAA;IAC3B,QAAQ,EAAE,MAAM,CAAA;CACjB,mDAqlCF,CAAA"}

package/dist/FeatureDetailsWidget/model.d.ts

@@ -22,7 +22,6 @@ export declare const ApolloFeatureDetailsWidgetModel: import("@jbrowse/mobx-stat
         readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
     } & {
         readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
-        readonly looksLikeGene: boolean;
     } & {
         setAttributes(attributes: Map<string, string[]>): void;
         setAttribute(key: string, value: string[]): void;
@@ -82,7 +81,6 @@ export declare const ApolloTranscriptDetailsModel: import("@jbrowse/mobx-state-t
         readonly transcriptParts: import("@apollo-annotation/mst").TranscriptPart[][];
     } & {
         readonly cdsLocations: import("@apollo-annotation/mst").TranscriptPartCoding[][];
-        readonly looksLikeGene: boolean;
     } & {
         setAttributes(attributes: Map<string, string[]>): void;
         setAttribute(key: string, value: string[]): void;

package/dist/FeatureDetailsWidget/model.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"model.d.ts","sourceRoot":"","sources":["../../src/FeatureDetailsWidget/model.ts"],"names":[],"mappings":"AAEA,OAAO,EACL,KAAK,iBAAiB,EAEvB,MAAM,wBAAwB,CAAA;AAG/B,OAAO,EACL,KAAK,QAAQ,EACb,KAAK,UAAU,EAGhB,MAAM,0BAA0B,CAAA;AAKjC,eAAO,MAAM,+BAA+B;;;;oBAI5B,0BACA;uBAGD,0BAEV;qBAU0C,0BAA0B;oBAc/D,0BACa;oBAOM,0BACX;uBAUQ,0BAA0B,gBACpD,0BAA0B;yBAEJ,0BAA0B,gBAAgB,0BAC1C;2BAII,0BACZ,kBACD,0BAA0B,oBAChC,0BACA;;;oCAEe,0BACrB,mBAAmB,0BAGpB,gCACyB,0BACF,wBAER,0BACK,oBAAoB,0BAE5B;;;;;;;;;;;;;;;;;;;;;;;;kBAwCa,CAAC;oBAA0B,CAAC,+JACP,0BAA0B,wBAAwB,0BAA0B,gBAAgB,0BAA0B;;;;;;;;;;eAvGxI,MAAM,GAAG,SAAS;;wBAGtB,iBAAiB;6BAIZ,MAAM;;;wGA0B9B,CAAA;AAKL,MAAM,WAAW,0BACf,SAAQ,QAAQ,CAAC,OAAO,+BAA+B,CAAC;CAAG;AAE7D,MAAM,WAAW,kCACf,SAAQ,UAAU,CAAC,OAAO,+BAA+B,CAAC;CAAG;AAE/D,eAAO,MAAM,4BAA4B;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kBA0DhB,CAAC;oBAA0B,CAAC;;;;;;;;;;eA1CzB,MAAM,GAAG,SAAS;;wBAGtB,iBAAiB;6BAIZ,MAAM;;;wGA0B9B,CAAA;AAKL,MAAM,WAAW,6BACf,SAAQ,QAAQ,CAAC,OAAO,4BAA4B,CAAC;CAAG;AAE1D,MAAM,WAAW,qCACf,SAAQ,UAAU,CAAC,OAAO,4BAA4B,CAAC;CAAG"}
+{"version":3,"file":"model.d.ts","sourceRoot":"","sources":["../../src/FeatureDetailsWidget/model.ts"],"names":[],"mappings":"AAEA,OAAO,EACL,KAAK,iBAAiB,EAEvB,MAAM,wBAAwB,CAAA;AAG/B,OAAO,EACL,KAAK,QAAQ,EACb,KAAK,UAAU,EAGhB,MAAM,0BAA0B,CAAA;AAKjC,eAAO,MAAM,+BAA+B;;;;oBAI5B,0BACA;uBAGD,0BAEV;qBAU0C,0BAA0B;oBAc/D,0BACa;oBAOM,0BACX;uBAUQ,0BAA0B,gBACpD,0BAA0B;yBAEJ,0BAA0B,gBAAgB,0BAC1C;2BAII,0BACZ,kBACD,0BAA0B,oBAChC,0BACA;;;oCAEe,0BACrB,mBAAmB,0BAGpB,gCACyB,0BACF,wBAER,0BACK,oBAAoB,0BAE5B;;;;;;;;;;;;;;;;;;;;;;;kBAuC+B,CAAC;oBAC7B,CAAC,+JACP,0BAA0B,wBAAwB,0BAA0B,gBAAgB,0BAA0B;;;;;;;;;;eAvGnG,MAAM,GAAG,SAAS;;wBAGtB,iBAAiB;6BAIZ,MAAM;;;wGA0B9B,CAAA;AAKL,MAAM,WAAW,0BACf,SAAQ,QAAQ,CAAC,OAAO,+BAA+B,CAAC;CAAG;AAE7D,MAAM,WAAW,kCACf,SAAQ,UAAU,CAAC,OAAO,+BAA+B,CAAC;CAAG;AAE/D,eAAO,MAAM,4BAA4B;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kBAyDE,CAAC;oBAC7B,CAAC;;;;;;;;;;eA1CY,MAAM,GAAG,SAAS;;wBAGtB,iBAAiB;6BAIZ,MAAM;;;wGA0B9B,CAAA;AAKL,MAAM,WAAW,6BACf,SAAQ,QAAQ,CAAC,OAAO,4BAA4B,CAAC;CAAG;AAE1D,MAAM,WAAW,qCACf,SAAQ,UAAU,CAAC,OAAO,4BAA4B,CAAC;CAAG"}

package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"CheckResultWarnings.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/components/CheckResultWarnings.tsx"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,mBAAmB,IAAI,oBAAoB,EAAE,MAAM,eAAe,CAAA;AAEhF,eAAO,MAAM,mBAAmB,iBAE7B;IACD,OAAO,EAAE,oBAAoB,CAAA;CAC9B,yEA4EC,CAAA"}
+{"version":3,"file":"CheckResultWarnings.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/components/CheckResultWarnings.tsx"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,mBAAmB,IAAI,oBAAoB,EAAE,MAAM,eAAe,CAAA;AAEhF,eAAO,MAAM,mBAAmB,iBAE7B;IACD,OAAO,EAAE,oBAAoB,CAAA;CAC9B,yEAwEC,CAAA"}

package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"LinearApolloDisplay.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/components/LinearApolloDisplay.tsx"],"names":[],"mappings":"AAaA,OAAO,KAAK,EAAE,mBAAmB,IAAI,oBAAoB,EAAE,MAAM,eAAe,CAAA;AAIhF,UAAU,wBAAwB;IAChC,KAAK,EAAE,oBAAoB,CAAA;CAC5B;AAID,eAAO,MAAM,mBAAmB,UACvB,wBAAwB,mDAgJ/B,CAAA"}
+{"version":3,"file":"LinearApolloDisplay.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/components/LinearApolloDisplay.tsx"],"names":[],"mappings":"AAaA,OAAO,KAAK,EAAE,mBAAmB,IAAI,oBAAoB,EAAE,MAAM,eAAe,CAAA;AAKhF,UAAU,wBAAwB;IAChC,KAAK,EAAE,oBAAoB,CAAA;CAC5B;AAID,eAAO,MAAM,mBAAmB,UACvB,wBAAwB,mDA2H/B,CAAA"}

package/dist/LinearApolloDisplay/components/OverlayCanvas.d.ts

@@ -0,0 +1,7 @@
+import type { LinearApolloDisplay as LinearApolloDisplayI } from '../stateModel';
+interface LinearApolloDisplayProps {
+    model: LinearApolloDisplayI;
+}
+export declare const OverlayCanvas: (props: LinearApolloDisplayProps) => import("react/jsx-runtime").JSX.Element | null;
+export {};
+//# sourceMappingURL=OverlayCanvas.d.ts.map

package/dist/LinearApolloDisplay/components/OverlayCanvas.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"OverlayCanvas.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/components/OverlayCanvas.tsx"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,mBAAmB,IAAI,oBAAoB,EAAE,MAAM,eAAe,CAAA;AAIhF,UAAU,wBAAwB;IAChC,KAAK,EAAE,oBAAoB,CAAA;CAC5B;AAED,eAAO,MAAM,aAAa,UACjB,wBAAwB,mDAwD/B,CAAA"}

package/dist/LinearApolloDisplay/components/Tooltip.d.ts

@@ -0,0 +1,10 @@
+import type { ApolloSessionModel } from '../../session';
+import type { Coord } from '../../util/displayUtils';
+interface LinearApolloDisplayProps {
+    mouseCooordinate: Coord | undefined;
+    session: ApolloSessionModel;
+    dragging: boolean;
+}
+export declare const Tooltip: (props: LinearApolloDisplayProps) => import("react/jsx-runtime").JSX.Element | undefined;
+export {};
+//# sourceMappingURL=Tooltip.d.ts.map

package/dist/LinearApolloDisplay/components/Tooltip.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"Tooltip.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/components/Tooltip.tsx"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAA;AACvD,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,yBAAyB,CAAA;AAEpD,UAAU,wBAAwB;IAChC,gBAAgB,EAAE,KAAK,GAAG,SAAS,CAAA;IACnC,OAAO,EAAE,kBAAkB,CAAA;IAC3B,QAAQ,EAAE,OAAO,CAAA;CAClB;AAED,eAAO,MAAM,OAAO,UACX,wBAAwB,wDA2B/B,CAAA"}

package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts

@@ -1,4 +1,3 @@
 import type { Glyph } from './Glyph';
-export declare function drawBox(ctx: CanvasRenderingContext2D, x: number, y: number, width: number, height: number, color: string): void;
 export declare const boxGlyph: Glyph;
 //# sourceMappingURL=BoxGlyph.d.ts.map

package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"BoxGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/BoxGlyph.ts"],"names":[],"mappings":"AAgBA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,SAAS,CAAA;AA0MpC,wBAAgB,OAAO,CACrB,GAAG,EAAE,wBAAwB,EAC7B,CAAC,EAAE,MAAM,EACT,CAAC,EAAE,MAAM,EACT,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,MAAM,EACd,KAAK,EAAE,MAAM,QAId;AA4GD,eAAO,MAAM,QAAQ,EAAE,KActB,CAAA"}
+{"version":3,"file":"BoxGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/BoxGlyph.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,KAAK,EAAe,MAAM,SAAS,CAAA;AA4FjD,eAAO,MAAM,QAAQ,EAAE,KAOtB,CAAA"}

package/dist/LinearApolloDisplay/glyphs/CDSGlyph.d.ts

@@ -0,0 +1,3 @@
+import type { Glyph } from './Glyph';
+export declare const cdsGlyph: Glyph;
+//# sourceMappingURL=CDSGlyph.d.ts.map

package/dist/LinearApolloDisplay/glyphs/CDSGlyph.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"CDSGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/CDSGlyph.ts"],"names":[],"mappings":"AAYA,OAAO,KAAK,EAAE,KAAK,EAAe,MAAM,SAAS,CAAA;AA6HjD,eAAO,MAAM,QAAQ,EAAE,KAOtB,CAAA"}

package/dist/LinearApolloDisplay/glyphs/ExonGlyph.d.ts

@@ -0,0 +1,3 @@
+import type { Glyph } from './Glyph';
+export declare const exonGlyph: Glyph;
+//# sourceMappingURL=ExonGlyph.d.ts.map

package/dist/LinearApolloDisplay/glyphs/ExonGlyph.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ExonGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/ExonGlyph.ts"],"names":[],"mappings":"AAqBA,OAAO,KAAK,EAAE,KAAK,EAAe,MAAM,SAAS,CAAA;AAuLjD,eAAO,MAAM,SAAS,EAAE,KAOvB,CAAA"}

package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"GeneGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/GeneGlyph.ts"],"names":[],"mappings":"AAuCA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,SAAS,CAAA;AAm+BpC,eAAO,MAAM,SAAS,EAAE,KAcvB,CAAA"}
+{"version":3,"file":"GeneGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/GeneGlyph.ts"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,KAAK,EAAe,MAAM,SAAS,CAAA;AAiGjD,eAAO,MAAM,SAAS,EAAE,KAOvB,CAAA"}

package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"GenericChildGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/GenericChildGlyph.ts"],"names":[],"mappings":"AAeA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,SAAS,CAAA;AAiMpC,eAAO,MAAM,iBAAiB,EAAE,KAc/B,CAAA"}
+{"version":3,"file":"GenericChildGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/GenericChildGlyph.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,KAAK,EAAe,MAAM,SAAS,CAAA;AAgGjD,eAAO,MAAM,iBAAiB,EAAE,KAO/B,CAAA"}

package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts

@@ -1,26 +1,32 @@
 import type { AnnotationFeature } from '@apollo-annotation/mst';
 import type { MenuItem } from '@jbrowse/core/ui';
-import type { OntologyRecord } from '../../OntologyManager';
-import type { MousePositionWithFeature } from '../../util';
-import type { LinearApolloDisplayMouseEvents } from '../stateModel/mouseEvents';
-import type { LinearApolloDisplayRendering } from '../stateModel/rendering';
-import type { CanvasMouseEvent } from '../types';
+import type { ContentBlock } from '@jbrowse/core/util/blockTypes';
+import type { LinearApolloDisplay } from '../stateModel';
+interface LayoutFeature {
+    feature: AnnotationFeature;
+    rowInFeature: number;
+}
+export type LayoutRow = LayoutFeature[];
+export interface Layout {
+    byFeature: Map<string, number>;
+    byRow: LayoutRow[];
+    min: number;
+    max: number;
+}
+export type OverlayType = 'hover' | 'select' | 'highlight';
 export interface Glyph {
-    /** @returns number of layout rows used by this glyph with this feature and zoom level */
-    getRowCount(feature: AnnotationFeature, featureTypeOntology: OntologyRecord, bpPerPx: number): number;
     /** draw the feature's primary rendering on the canvas */
-    draw(ctx: CanvasRenderingContext2D, feature: AnnotationFeature, row: number, stateModel: LinearApolloDisplayRendering, displayedRegionIndex: number): void;
-    /** @returns the feature or subfeature at the given bp and row number in this glyph's layout */
-    getFeatureFromLayout(feature: AnnotationFeature, bp: number, row: number, featureTypeOntology: OntologyRecord): AnnotationFeature | undefined;
-    getRowForFeature(feature: AnnotationFeature, childFeature: AnnotationFeature, featureTypeOntology: OntologyRecord): number | undefined;
-    drawHover(display: LinearApolloDisplayMouseEvents, overlayCtx: CanvasRenderingContext2D): void;
-    drawDragPreview(display: LinearApolloDisplayMouseEvents, ctx: CanvasRenderingContext2D): void;
-    onMouseDown(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
-    onMouseMove(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
-    onMouseLeave(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
-    onMouseUp(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
-    drawTooltip(display: LinearApolloDisplayMouseEvents, context: CanvasRenderingContext2D): void;
-    getContextMenuItemsForFeature(display: LinearApolloDisplayMouseEvents, sourceFeature: AnnotationFeature): MenuItem[];
-    getContextMenuItems(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature): MenuItem[];
+    draw(display: LinearApolloDisplay, ctx: CanvasRenderingContext2D, feature: AnnotationFeature, row: number, rowInFeature: number, block: ContentBlock): void;
+    /**
+     * draw an overlay of the feature, used for when the feature is selected,
+     * hovered over, or highlighted
+     */
+    drawOverlay(display: LinearApolloDisplay, overlayCtx: CanvasRenderingContext2D, feature: AnnotationFeature, row: number, block: ContentBlock, overlayType: OverlayType, rowInFeature?: number): void;
+    /** draw a preview of the result of a dragging action on the overlay canvas */
+    drawDragPreview(display: LinearApolloDisplay, overlayCtx: CanvasRenderingContext2D, feature: AnnotationFeature, row: number, block: ContentBlock): void;
+    getLayout(display: LinearApolloDisplay, feature: AnnotationFeature): Layout;
+    getContextMenuItems(display: LinearApolloDisplay, feature: AnnotationFeature): MenuItem[];
+    isDraggable: boolean;
 }
+export {};
 //# sourceMappingURL=Glyph.d.ts.map

package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Glyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/Glyph.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAA;AAEhD,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,uBAAuB,CAAA;AAC3D,OAAO,KAAK,EAAE,wBAAwB,EAAE,MAAM,YAAY,CAAA;AAC1D,OAAO,KAAK,EAAE,8BAA8B,EAAE,MAAM,2BAA2B,CAAA;AAC/E,OAAO,KAAK,EAAE,4BAA4B,EAAE,MAAM,yBAAyB,CAAA;AAC3E,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,UAAU,CAAA;AAEhD,MAAM,WAAW,KAAK;IACpB,yFAAyF;IACzF,WAAW,CACT,OAAO,EAAE,iBAAiB,EAC1B,mBAAmB,EAAE,cAAc,EACnC,OAAO,EAAE,MAAM,GACd,MAAM,CAAA;IACT,yDAAyD;IACzD,IAAI,CACF,GAAG,EAAE,wBAAwB,EAC7B,OAAO,EAAE,iBAAiB,EAC1B,GAAG,EAAE,MAAM,EACX,UAAU,EAAE,4BAA4B,EACxC,oBAAoB,EAAE,MAAM,GAC3B,IAAI,CAAA;IACP,+FAA+F;IAC/F,oBAAoB,CAClB,OAAO,EAAE,iBAAiB,EAC1B,EAAE,EAAE,MAAM,EACV,GAAG,EAAE,MAAM,EACX,mBAAmB,EAAE,cAAc,GAClC,iBAAiB,GAAG,SAAS,CAAA;IAChC,gBAAgB,CACd,OAAO,EAAE,iBAAiB,EAC1B,YAAY,EAAE,iBAAiB,EAC/B,mBAAmB,EAAE,cAAc,GAClC,MAAM,GAAG,SAAS,CAAA;IAErB,SAAS,CACP,OAAO,EAAE,8BAA8B,EACvC,UAAU,EAAE,wBAAwB,GACnC,IAAI,CAAA;IAEP,eAAe,CACb,OAAO,EAAE,8BAA8B,EACvC,GAAG,EAAE,wBAAwB,GAC5B,IAAI,CAAA;IAEP,WAAW,CACT,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,WAAW,CACT,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,YAAY,CACV,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,SAAS,CACP,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,WAAW,CACT,OAAO,EAAE,8BAA8B,EACvC,OAAO,EAAE,wBAAwB,GAChC,IAAI,CAAA;IAEP,6BAA6B,CAC3B,OAAO,EAAE,8BAA8B,EACvC,aAAa,EAAE,iBAAiB,GAC/B,QAAQ,EAAE,CAAA;IAEb,mBAAmB,CACjB,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,GAC7C,QAAQ,EAAE,CAAA;CACd"}
+{"version":3,"file":"Glyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/Glyph.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAA;AAChD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,+BAA+B,CAAA;AAEjE,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,eAAe,CAAA;AAExD,UAAU,aAAa;IACrB,OAAO,EAAE,iBAAiB,CAAA;IAC1B,YAAY,EAAE,MAAM,CAAA;CACrB;AACD,MAAM,MAAM,SAAS,GAAG,aAAa,EAAE,CAAA;AAEvC,MAAM,WAAW,MAAM;IACrB,SAAS,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAA;IAC9B,KAAK,EAAE,SAAS,EAAE,CAAA;IAClB,GAAG,EAAE,MAAM,CAAA;IACX,GAAG,EAAE,MAAM,CAAA;CACZ;AAED,MAAM,MAAM,WAAW,GAAG,OAAO,GAAG,QAAQ,GAAG,WAAW,CAAA;AAE1D,MAAM,WAAW,KAAK;IACpB,yDAAyD;IACzD,IAAI,CACF,OAAO,EAAE,mBAAmB,EAC5B,GAAG,EAAE,wBAAwB,EAC7B,OAAO,EAAE,iBAAiB,EAC1B,GAAG,EAAE,MAAM,EACX,YAAY,EAAE,MAAM,EACpB,KAAK,EAAE,YAAY,GAClB,IAAI,CAAA;IACP;;;OAGG;IACH,WAAW,CACT,OAAO,EAAE,mBAAmB,EAC5B,UAAU,EAAE,wBAAwB,EACpC,OAAO,EAAE,iBAAiB,EAC1B,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,YAAY,EACnB,WAAW,EAAE,WAAW,EACxB,YAAY,CAAC,EAAE,MAAM,GACpB,IAAI,CAAA;IACP,8EAA8E;IAC9E,eAAe,CACb,OAAO,EAAE,mBAAmB,EAC5B,UAAU,EAAE,wBAAwB,EACpC,OAAO,EAAE,iBAAiB,EAC1B,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,YAAY,GAClB,IAAI,CAAA;IAEP,SAAS,CAAC,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,iBAAiB,GAAG,MAAM,CAAA;IAE3E,mBAAmB,CACjB,OAAO,EAAE,mBAAmB,EAC5B,OAAO,EAAE,iBAAiB,GACzB,QAAQ,EAAE,CAAA;IAEb,WAAW,EAAE,OAAO,CAAA;CACrB"}

package/dist/LinearApolloDisplay/glyphs/TranscriptGlyph.d.ts

@@ -0,0 +1,3 @@
+import type { Glyph } from './Glyph';
+export declare const transcriptGlyph: Glyph;
+//# sourceMappingURL=TranscriptGlyph.d.ts.map

package/dist/LinearApolloDisplay/glyphs/TranscriptGlyph.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"TranscriptGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/TranscriptGlyph.ts"],"names":[],"mappings":"AAiBA,OAAO,KAAK,EAAE,KAAK,EAA0B,MAAM,SAAS,CAAA;AA0Q5D,eAAO,MAAM,eAAe,EAAE,KAO7B,CAAA"}

package/dist/LinearApolloDisplay/glyphs/util.d.ts

@@ -1,12 +1,25 @@
+import type { AnnotationFeature } from '@apollo-annotation/mst';
 import type { ContentBlock } from '@jbrowse/core/util/blockTypes';
 import type { LinearApolloDisplay } from '../stateModel';
+import type { MousePosition } from '../stateModel/mouseEvents';
+import type { OverlayType } from './Glyph';
 export declare function getLeftPx(display: LinearApolloDisplay, feature: {
     max: number;
     min: number;
 }, block: ContentBlock): number;
+export declare function getFeatureBox(display: LinearApolloDisplay, feature: {
+    max: number;
+    min: number;
+}, row: number, block: ContentBlock): [number, number, number, number];
+export declare function drawOverlayBox(display: LinearApolloDisplay, ctx: CanvasRenderingContext2D, left: number, top: number, width: number, height: number, feature: AnnotationFeature, overlayType: OverlayType): void;
 /**
  * Perform a canvas strokeRect, but have the stroke be contained within the
  * given rect instead of centered on it.
  */
 export declare function strokeRectInner(ctx: CanvasRenderingContext2D, left: number, top: number, width: number, height: number, color: string): void;
+/** @returns undefined if mouse not on the edge of this feature, otherwise 'start' or 'end' depending on which edge */
+export declare function isMouseOnFeatureEdge(mousePosition: MousePosition, feature: {
+    min: number;
+    max: number;
+}, stateModel: LinearApolloDisplay): "min" | "max" | undefined;
 //# sourceMappingURL=util.d.ts.map

package/dist/LinearApolloDisplay/glyphs/util.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"util.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/util.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,+BAA+B,CAAA;AAEjE,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,eAAe,CAAA;AAExD,wBAAgB,SAAS,CACvB,OAAO,EAAE,mBAAmB,EAC5B,OAAO,EAAE;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,EACrC,KAAK,EAAE,YAAY,UAWpB;AAED;;;GAGG;AACH,wBAAgB,eAAe,CAC7B,GAAG,EAAE,wBAAwB,EAC7B,IAAI,EAAE,MAAM,EACZ,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,MAAM,EACd,KAAK,EAAE,MAAM,QAKd"}
+{"version":3,"file":"util.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/util.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,+BAA+B,CAAA;AAIjE,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,eAAe,CAAA;AACxD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,2BAA2B,CAAA;AAE9D,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,SAAS,CAAA;AAE1C,wBAAgB,SAAS,CACvB,OAAO,EAAE,mBAAmB,EAC5B,OAAO,EAAE;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,EACrC,KAAK,EAAE,YAAY,UAWpB;AAED,wBAAgB,aAAa,CAC3B,OAAO,EAAE,mBAAmB,EAC5B,OAAO,EAAE;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,EACrC,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,YAAY,GAClB,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,CAQlC;AAuBD,wBAAgB,cAAc,CAC5B,OAAO,EAAE,mBAAmB,EAC5B,GAAG,EAAE,wBAAwB,EAC7B,IAAI,EAAE,MAAM,EACZ,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,iBAAiB,EAC1B,WAAW,EAAE,WAAW,QAQzB;AAED;;;GAGG;AACH,wBAAgB,eAAe,CAC7B,GAAG,EAAE,wBAAwB,EAC7B,IAAI,EAAE,MAAM,EACZ,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,MAAM,EACd,KAAK,EAAE,MAAM,QAKd;AAED,sHAAsH;AACtH,wBAAgB,oBAAoB,CAClC,aAAa,EAAE,aAAa,EAC5B,OAAO,EAAE;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,EACrC,UAAU,EAAE,mBAAmB,6BAqBhC"}

package/dist/LinearApolloDisplay/stateModel/base.d.ts

@@ -3,6 +3,7 @@ import type PluginManager from '@jbrowse/core/PluginManager';
 import { type AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
 import type { ApolloInternetAccountModel } from '../../ApolloInternetAccount/model';
+import { Export as ExportIcon } from '../../components/DownloadGFF3';
 import type { ApolloSessionModel, HoveredFeature } from '../../session';
 export declare function baseModelFactory(_pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
     id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -244,6 +245,22 @@ export declare function baseModelFactory(_pluginManager: PluginManager, configSc
             type?: undefined;
             checked?: undefined;
         })[];
+        icon?: undefined;
+        onClick?: undefined;
+    } | {
+        label: string;
+        icon: typeof ExportIcon;
+        onClick: () => void;
+        type?: undefined;
+        subMenu?: undefined;
+    } | {
+        label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
+        onClick: () => void;
+        type?: undefined;
+        subMenu?: undefined;
     })[];
 } & {
     setSelectedFeature(feature?: AnnotationFeature): void;

package/dist/LinearApolloDisplay/stateModel/base.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"base.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/stateModel/base.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,aAAa,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EACL,KAAK,0BAA0B,EAGhC,MAAM,6BAA6B,CAAA;AAiBpC,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,oCAAoC,CAAA;AAG/E,OAAO,KAAK,EAAE,0BAA0B,EAAE,MAAM,mCAAmC,CAAA;AAEnF,OAAO,KAAK,EAAE,kBAAkB,EAAE,cAAc,EAAE,MAAM,eAAe,CAAA;AAMvE,wBAAgB,gBAAgB,CAC9B,cAAc,EAAE,aAAa,EAC7B,YAAY,EAAE,0BAA0B;eArCzC,0BAA0B,wBAAwB,0BACvC;iBACV,0BAA0B;0BAErB,0BAA0B,gBACnB,0BAEX;;;;;;;;;;;;;;;;;;;;;mBASK,wCAAwC;;;;mBAQ5B,0BAA0B,wBAAwB,0BACtD;uBAEM,0BAA0B,wBAAwB,0BAC1D;yBACF,0BAAyB;kCACf,0BAA0B,gBACnC,0BAA0B;;;;;kBAOvC,0BACsB,yBAAyB,0BAEzC;0BACA,CAAH;kBAAgC,CAAC;;;;;;;mBAOlB,wCAEX;;;;mBAMI,0BACG,wBAAwB,0BAA0B;uBAE7C,0BAEjB,wBAAwB,0BACT;yBACmB,0BAE9B;kCAIQ,0BAEF,gBACN,0BACM;;;;;kBAKJ,0BACS,yBAAyB,0BAEvC;;;iCAMG,oBACF;;;;;;;;;;;mBAW+B,wCAEnC;;;;;;;;;;2BAYS,wCAAwC;;;;2BAQ7B,0BACZ,wBAAyB,0BAAyB;+BACtB,0BACd,wBACZ,0BAA0B;iCACY,0BACjC;0CACwC,0BAC/C,gBACM,0BAA0B;;;;;0BAKY,0BAA0B,yBACvD,0BAA0B;kCAGlC,CAAA;0BAAwC,CAAC;;;;;;;2BAOhD,wCACW;;;;2BAKC,0BAA0B,wBACpC,0BACV;+BACqC,0BAC/B,wBAAwB,0BAA0B;iCAI1C,0BACA;0CAER,0BACe,gBAAgB,0BACf;;;;;0BAKsB,0BACvC,yBAAyB,0BAEpB;;;yCAKO,oBACV;;;;mBAOU,0BAA0B,wBAErC,0BAAuB;uBACd,0BAA0B,wBAEjC,0BAA0B;yBAGpB,0BAA0B;kCACrB,0BACjB,gBAEE,0BACA;;;;;;;;;;;2BAWwB,wCACX;;;;2BAMD,0BACP,wBAAwB,0BACrB;+BACa,0BACtB,wBAAwB,0BACT;iCAGF,0BACD;0CACG,0BACX,gBAAgB,0BACrB;;;;;0BAMwB,0BACV,yBAAyB,0BACnB;kCACmB,CAAC;0BAE1B,CAAJ;;;;;;;2BAMqB,wCACZ;;;;2BAQH,0BAA0B,wBAAwB,0BACpD;+BAA8C,0BACtD,wBAAyB,0BACb;iCAGE,0BAAK;0CAEL,0BACX,gBAAgB,0BAA0B;;;;;0BAMrC,0BACL,yBAED,0BAEH;;;yCAKiB,oBAAqB;;;;kBAKL,0BAC9B,yBAAyB,0BAEjC;;kCAC6B,qCACvB;;;;;;;;;;;;;;;kBAzN6C,qBAAqB;;;;;;sBA0B5B,kBAAkB;;;;;;;;;oCAqCnD,0BAA0B,GAAG,SAAS;;gCAMjB,MAAM;;;;4BAmBV,MAAM;6BAGL,MAAM;2BAIR,MAAM;;;;;sCAoBK,MAAM,EAAE;wBAGtB,OAAO;+CAGgB;QAAE,aAAa,EAAE,MAAM,CAAA;KAAE;;;;;;;;;;;;;;;;;;iCAoFvC,iBAAiB;uCAKX,cAAc;sCAMtC,iBAAiB,0BACF,CAAC,MAAM,EAAE,MAAM,CAAC;;yGAkD/C"}
+{"version":3,"file":"base.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/stateModel/base.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,aAAa,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EACL,KAAK,0BAA0B,EAGhC,MAAM,6BAA6B,CAAA;AAiBpC,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,oCAAoC,CAAA;AAK/E,OAAO,KAAK,EAAE,0BAA0B,EAAE,MAAM,mCAAmC,CAAA;AACnF,OAAO,EAEL,MAAM,IAAI,UAAU,EACrB,MAAM,+BAA+B,CAAA;AAItC,OAAO,KAAK,EAAE,kBAAkB,EAAE,cAAc,EAAE,MAAM,eAAe,CAAA;AAMvE,wBAAgB,gBAAgB,CAC9B,cAAc,EAAE,aAAa,EAC7B,YAAY,EAAE,0BAA0B;eA7CzC,0BAA0B,wBAAwB,0BACvC;iBACV,0BAA0B;0BAErB,0BAA0B,gBACnB,0BAEX;;;;;;;;;;;;;;;;;;;;;mBASK,wCAAwC;;;;mBAQ5B,0BAA0B,wBAAwB,0BACtD;uBAAsC,0BAChC,wBAAwB,0BACtC;yBAE8B,0BAA0B;kCAGpD,0BACE,gBAAgB,0BACb;;;;;kBAEwC,0BAC3C,yBAAyB,0BAA0B;0BAC1B,CAAC;kBACnB,CAAC;;;;;;;mBAQT,wCAAwC;;;;mBAK9C,0BACM,wBACN,0BACA;uBACE,0BACA,wBACC,0BACF;yBAGE,0BAA0B;kCAGhC,0BACG,gBAAgB,0BAA0B;;;;;kBAMpC,0BAA0B,yBAE/B,0BAGA;;;iCAKQ,oBAAqB;;;;;;;;;;;mBAc3B,wCACkB;;;;;;;;;;2BAcnB,wCAAwC;;;;2BAKtB,0BAEtB,wBACc,0BAEN;+BACC,0BAA0B,wBAAwB,0BACxC;iCAKlB,0BACE;0CAEA,0BAAiB,gBAAgB,0BAA0B;;;;;0BAKrD,0BACC,yBAAyB,0BAA0B;kCAE7B,CAAC;0BACxB,CAAC;;;;;;;2BAOT,wCACM;;;;2BAKF,0BAAoB,wBAAwB,0BAChC;+BACb,0BACC,wBAAwB,0BAA0B;iCAIrD,0BAA0B;0CACI,0BACrC,gBAAgB,0BAEhB;;;;;0BAMa,0BAA0B,yBACd,0BAEnB;;;yCAEW,oBAEf;;;;mBAGiC,0BAEpB,wBACJ,0BACJ;uBAEE,0BACE,wBACH,0BACJ;yBAEqB,0BACJ;kCAGX,0BAA0B,gBAAgB,0BAEtC;;;;;;;;;;;2BAWsC,wCAC1C;;;;2BAMU,0BACL,wBACD,0BACT;+BAC4B,0BACzB,wBACU,0BAAO;iCAEL,0BAAkB;0CAIpB,0BAAQ,gBAAgB,0BACrB;;;;;0BAOH,0BAAsB,yBACtB,0BAAO;kCAEP,CAAlB;0BACoB,CAAd;;;;;;;2BAQc,wCAAmB;;;;2BAMR,0BAA0B,wBACnC,0BAAiB;+BACD,0BAC1B,wBACM,0BACA;iCAIK,0BACtB;0CACkC,0BAA0B,gBAC7C,0BAAS;;;;;0BAKC,0BACjB,yBAAyB,0BACb;;;yCAE6B,oBAClC;;;;kBAOJ,0BACQ,yBACN,0BAAc;;kCAEF,qCAAa;;;;;;;;;;;;;;;kBA5Mc,qBAAqB;;;;;;sBA0B5B,kBAAkB;;;;;;;;;oCAqCnD,0BAA0B,GAAG,SAAS;;gCAMjB,MAAM;;;;4BAmBV,MAAM;6BAGL,MAAM;2BAIR,MAAM;;;;;sCAoBK,MAAM,EAAE;wBAGtB,OAAO;+CAGgB;QAAE,aAAa,EAAE,MAAM,CAAA;KAAE;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iCA+JvC,iBAAiB;uCAKX,cAAc;sCAMtC,iBAAiB,0BACF,CAAC,MAAM,EAAE,MAAM,CAAC;;yGAkD/C"}

package/dist/LinearApolloDisplay/stateModel/index.d.ts

@@ -21,7 +21,6 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
     apolloRowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
     detailsMinHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
     detailsHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
-    lastRowTooltipBufferHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
     isShown: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     filteredTranscripts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
 } & {
@@ -264,6 +263,22 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
             type?: undefined;
             checked?: undefined;
         })[];
+        icon?: undefined;
+        onClick?: undefined;
+    } | {
+        label: string;
+        icon: typeof import("../../components").Export;
+        onClick: () => void;
+        type?: undefined;
+        subMenu?: undefined;
+    } | {
+        label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
+        onClick: () => void;
+        type?: undefined;
+        subMenu?: undefined;
     })[];
 } & {
     setSelectedFeature(feature?: import("@apollo-annotation/mst").AnnotationFeature): void;
@@ -279,14 +294,15 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
     addSeenFeature(feature: import("@apollo-annotation/mst").AnnotationFeature): void;
     deleteSeenFeature(featureId: string): void;
 } & {
-    readonly featureLayouts: Map<number, [number, string][]>[];
-    getFeatureLayoutPosition(feature: import("@apollo-annotation/mst").AnnotationFeature): {
-        layoutIndex: number;
-        layoutRow: number;
-        featureRow: number;
-    } | undefined;
+    getCanonicalRefName(assemblyName: string, refSeq: string): string;
+} & {
+    isFeatureDisplayed(feature: import("@apollo-annotation/mst").AnnotationFeature): boolean;
+} & {
+    readonly layouts: Map<string, Map<string, import("../glyphs/Glyph").Layout>>;
+    getRowForFeature(feature: import("@apollo-annotation/mst").AnnotationFeature): number | undefined;
+    getFeaturesAtPosition(assemblyName: string, refName: string, row: number, bp: number): import("@apollo-annotation/mst").AnnotationFeature[];
 } & {
-    readonly highestRow: number;
+    highestRow(assemblyName: string): number;
 } & {
     afterAttach(): void;
 } & {
@@ -295,7 +311,8 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
     collaboratorCanvas: HTMLCanvasElement | null;
     theme: import("@mui/material").Theme;
 } & {
-    readonly featuresHeight: number;
+    featuresHeight(assemblyName: string): number;
+    readonly canvasPatterns: Record<"forward" | "backward", CanvasPattern | null>;
 } & {
     toggleShown(): void;
     setDetailsHeight(newHeight: number): void;
@@ -307,20 +324,21 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
     afterAttach(): void;
 } & {
     apolloDragging: {
-        start: import("../../util").MousePosition;
-        current: import("../../util").MousePosition;
+        start: import("./mouseEvents").MousePosition;
+        current: import("./mouseEvents").MousePosition;
         feature: import("@apollo-annotation/mst").AnnotationFeature;
         edge: import("../../util").Edge;
         shrinkParent: boolean;
     } | null;
     cursor: import("react").CSSProperties["cursor"] | undefined;
 } & {
-    getMousePosition(event: React.MouseEvent): import("../../util").MousePosition;
+    getMousePosition(event: React.MouseEvent): import("./mouseEvents").MousePosition;
+    getFeaturesAtMousePosition(mousePosition: import("./mouseEvents").MousePosition): import("@apollo-annotation/mst").AnnotationFeature[];
 } & {
-    continueDrag(mousePosition: import("../../util").MousePosition, event: import("../types").CanvasMouseEvent): void;
+    continueDrag(mousePosition: import("./mouseEvents").MousePosition, event: import("../types").CanvasMouseEvent): void;
     setDragging(dragInfo?: {
-        start: import("../../util").MousePosition;
-        current: import("../../util").MousePosition;
+        start: import("./mouseEvents").MousePosition;
+        current: import("./mouseEvents").MousePosition;
         feature: import("@apollo-annotation/mst").AnnotationFeature;
         edge: import("../../util").Edge;
         shrinkParent: boolean;
@@ -333,12 +351,12 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
 } & {
     contextMenuItems(event: React.MouseEvent<HTMLDivElement>): import("@jbrowse/core/ui").MenuItem[];
 } & {
-    startDrag(mousePosition: import("../../util").MousePositionWithFeature, feature: import("@apollo-annotation/mst").AnnotationFeature, edge: import("../../util").Edge, shrinkParent?: boolean): void;
+    startDrag(mousePosition: import("./mouseEvents").MousePosition, feature: import("@apollo-annotation/mst").AnnotationFeature, edge: import("../../util").Edge, shrinkParent?: boolean): void;
     endDrag(): void;
 } & {
     onMouseDown(event: import("../types").CanvasMouseEvent): void;
     onMouseMove(event: import("../types").CanvasMouseEvent): void;
-    onMouseLeave(event: import("../types").CanvasMouseEvent): void;
+    onMouseLeave(_event: import("../types").CanvasMouseEvent): void;
     onMouseUp(event: import("../types").CanvasMouseEvent): void;
 } & {
     afterAttach(): void;