@abi-software/mapintegratedvuer 0.7.2-vue3.0-alpha.0 → 1.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +201 -201
- package/README.md +150 -150
- package/assets/styleguide.css +19 -19
- package/cypress.config.js +23 -23
- package/dist/index.html +17 -17
- package/dist/mapintegratedvuer.js +74289 -73840
- package/dist/mapintegratedvuer.umd.cjs +878 -515
- package/dist/style.css +1 -1
- package/package.json +134 -135
- package/public/index.html +17 -17
- package/reporter-config.json +9 -9
- package/src/App.vue +245 -245
- package/src/assets/_variables.scss +43 -43
- package/src/assets/fonts/mapicon-species.eot +0 -0
- package/src/assets/fonts/mapicon-species.ttf +0 -0
- package/src/assets/fonts/mapicon-species.woff +0 -0
- package/src/assets/header-icon.scss +67 -67
- package/src/assets/mapicon-species-style.css +41 -41
- package/src/assets/styles.scss +9 -9
- package/src/components/ContentBar.vue +376 -376
- package/src/components/ContentVuer.vue +217 -217
- package/src/components/ContextCard.vue +385 -385
- package/src/components/ContextHelp.vue +73 -73
- package/src/components/CustomSplitter.vue +151 -151
- package/src/components/DatasetHeader.vue +97 -97
- package/src/components/DialogToolbarContent.vue +464 -464
- package/src/components/EventBus.js +3 -3
- package/src/components/FlatmapContextCard.vue +134 -134
- package/src/components/MapContent.vue +328 -333
- package/src/components/ResizeSensor.vue +47 -47
- package/src/components/SearchControls.vue +115 -115
- package/src/components/SimulatedData.js +721 -721
- package/src/components/SplitDialog.vue +287 -287
- package/src/components/SplitFlow.vue +414 -414
- package/src/components/index.js +7 -7
- package/src/components/markerZoomLevelsHardCoded.js +255 -255
- package/src/components/scripts/utilities.js +173 -173
- package/src/components/viewers/Flatmap.vue +145 -145
- package/src/components/viewers/Iframe.vue +31 -31
- package/src/components/viewers/MultiFlatmap.vue +384 -384
- package/src/components/viewers/Plot.vue +23 -23
- package/src/components/viewers/Scaffold.vue +198 -198
- package/src/components/viewers/Simulation.vue +21 -21
- package/src/icons/yellowstar.js +1 -1
- package/src/main.js +31 -31
- package/src/mixins/ContentMixin.js +438 -438
- package/src/mixins/DynamicMarkerMixin.js +88 -88
- package/src/mixins/S3Bucket.vue +37 -37
- package/src/stores/entries.js +40 -40
- package/src/stores/index.js +23 -23
- package/src/stores/settings.js +144 -144
- package/src/stores/splitFlow.js +523 -523
- package/static.json +7 -7
- package/vite.config.js +70 -70
- package/vite.static-build.js +12 -12
- package/vitest.workspace.js +3 -3
- package/vuese-generator.js +65 -65
- package/assets/gazelle-icons-no-background.css +0 -32
- package/dist/matterport.pdf +0 -0
- package/dist/test.txt +0 -0
- package/public/matterport.pdf +0 -0
- package/public/test.txt +0 -0
- package/q.json +0 -690
- package/src/mixins/RetrieveContextCardMixin.js +0 -82
- package/tsconfig.json +0 -19
package/README.md
CHANGED
@@ -1,150 +1,150 @@
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# mapintegratedvuer
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This project aims to provide an application to visually navigate anatomical entities to discover functional and physiological datasets
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from organ-specific neural circuitry.
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## Components in mapintegratedvuer
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Mapintegratedvuer includes multiple components for visualising data, the list of viewers can be found below:
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### [Flatmapvuer](https://github.com/ABI-Software/flatmapvuer)
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### [Scaffoldvuer](https://github.com/ABI-Software/scaffoldvuer)
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### [Simulationvuer](https://github.com/ABI-Software/simulationvuer)
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### [Plotvuer](https://github.com/ABI-Software/plotvuer)
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### [Sidebar](https://github.com/ABI-Software/map-sidebar.git)
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## mapintegratedvuer on NPM
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mapintegratedvuer is available on npm and can be installed into your project with the following command:
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```bash
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npm i @abi-software/mapintegratedvuer
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```
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## Project setup
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```
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npm install
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```
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### Compiles and minifies for production
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```
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npm run build-bundle
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```
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## How to use
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Install the package in your vue app project with the following command "npm i @abi-software/mapintegratedvuer".
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Import the package in your script as followed:
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```javascript
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import '@abi-software/mapintegratedvuer';
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import '@abi-software/mapintegratedvuer/dist/mapintegratedvuer.css';
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```
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The codes above register the MapContent component in the global scope.
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You can now use the MapContent in your vue template as followed:
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```html
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<MapContent />
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```
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## Project setup from Github
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The source code is available from Github, it can be found here: https://github.com/ABI-Software/mapintegratedvuer .
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### Clone the respositroy
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```bash
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git clone https://github.com/ABI-Software/mapintegratedvuer
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```
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### Setup
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```bash
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npm install
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```
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### Create an instance
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```bash
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npm run serve
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```
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### Compiles and minifies for production
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```bash
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npm run build-bundle
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```
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## Example
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The following pagedemonstrates the mapintegratedapp in action: https://mapcore-demo.org/current/sparc-app/maps
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## Testing mapintegratedvuer dependencies in [sparc-app](https://github.com/nih-sparc/sparc-app/)
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We will cover three options for updating nested dependencies.
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### 1. Copy build files from `npm run build-bundle`
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This works by directly changing files in `node-modules/`, where node will look to resolve dependencies.
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```
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cd <your-dependency>
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npm run build-bundle
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cp /dist <mapintegratedvuer-path>/node_modules/@<your-npmhandle>/<your-dependency>/dist
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cd <mapintegratedvuer-path>
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npm run build-bundle
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cp /dist <sparc-app-path>/node_modules/@abi-software/mapintegratedvuer/dist
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yarn dev
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```
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*Note: this assumes assets in the static folders shipped with the npm package will remain unchanged*
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### 2. Use `yarn link`
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This is a variant of option 1, where we use `yarn link` to create a symbolic link from mapintegratedvuer->spar-app
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It reduces the number of copies to 1, but still requires 3 builds
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```
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cd <your-dependency>
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npm run build-bundle
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cp /dist <mapintegratedvuer-path>/node_modules/@<your-npmhandle>/<your-dependency>/dist
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cd <mapintegratedvuer-path>
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npm run build-bundle
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yarn link
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cd sparc-app
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yarn link @abi-software/mapintegratedvuer
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yarn dev
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```
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(npm link does not work without disabling es-lint, which we won't go into)
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### 3. Publish own version of mapintegratedvuer
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This method is the most time consuming and has the downside of populating the npm package's version history with builds.
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Since it mimics the way `sparc-app` will use it, it's gauranteed to work.
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```
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cd <your-dependency>
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npm run build-bundle
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npm publish --tag alpha
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cd mapintegratedvuer
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npm install @<your-npmhandle>/<your-dependency>@alpha
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```
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Edit mapintegratedvuer/package.json:
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Change `@abi-software/mapintegratedvuer` to `@<your-npm-handle>/mapintegratedvuer`
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```
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cd mapintegratedvuer
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npm run build-bundle
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npm publish --tag alpha
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```
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Edit sparc-app/pages/maps/index.vue
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Change `@abi-software/mapintegratedvuer` to `@<your-npm-handle>/mapintegratedvuer`
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```
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cd sparc-app
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yarn add @<your-npm-handle>/mapintegratedvuer@alpha
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yarn dev
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```
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## Documentation
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The documentation is developed with `vitepress` and `vuese`. Documentation pages are in the `docs` folder.
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### To run in local development mode
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```bash
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npm run docs:watch
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```
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This will start the documentation server with `vitepress` on port `:5173` and watch the `FlatmapVuer` and `MultiFlatmapVuer` components changes.
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# mapintegratedvuer
|
2
|
+
|
3
|
+
This project aims to provide an application to visually navigate anatomical entities to discover functional and physiological datasets
|
4
|
+
from organ-specific neural circuitry.
|
5
|
+
|
6
|
+
## Components in mapintegratedvuer
|
7
|
+
|
8
|
+
Mapintegratedvuer includes multiple components for visualising data, the list of viewers can be found below:
|
9
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+
|
10
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+
### [Flatmapvuer](https://github.com/ABI-Software/flatmapvuer)
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11
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+
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### [Scaffoldvuer](https://github.com/ABI-Software/scaffoldvuer)
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### [Simulationvuer](https://github.com/ABI-Software/simulationvuer)
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### [Plotvuer](https://github.com/ABI-Software/plotvuer)
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### [Sidebar](https://github.com/ABI-Software/map-sidebar.git)
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## mapintegratedvuer on NPM
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mapintegratedvuer is available on npm and can be installed into your project with the following command:
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24
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```bash
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npm i @abi-software/mapintegratedvuer
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```
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## Project setup
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```
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npm install
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```
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### Compiles and minifies for production
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```
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npm run build-bundle
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```
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## How to use
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39
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Install the package in your vue app project with the following command "npm i @abi-software/mapintegratedvuer".
|
40
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+
Import the package in your script as followed:
|
41
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+
```javascript
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import '@abi-software/mapintegratedvuer';
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+
import '@abi-software/mapintegratedvuer/dist/mapintegratedvuer.css';
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```
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+
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46
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The codes above register the MapContent component in the global scope.
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47
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+
You can now use the MapContent in your vue template as followed:
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48
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```html
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49
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<MapContent />
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```
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+
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## Project setup from Github
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+
|
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The source code is available from Github, it can be found here: https://github.com/ABI-Software/mapintegratedvuer .
|
55
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+
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### Clone the respositroy
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```bash
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git clone https://github.com/ABI-Software/mapintegratedvuer
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```
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### Setup
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```bash
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npm install
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```
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### Create an instance
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```bash
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npm run serve
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```
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### Compiles and minifies for production
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```bash
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npm run build-bundle
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```
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## Example
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The following pagedemonstrates the mapintegratedapp in action: https://mapcore-demo.org/current/sparc-app/maps
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78
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+
|
79
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+
|
80
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## Testing mapintegratedvuer dependencies in [sparc-app](https://github.com/nih-sparc/sparc-app/)
|
81
|
+
We will cover three options for updating nested dependencies.
|
82
|
+
|
83
|
+
### 1. Copy build files from `npm run build-bundle`
|
84
|
+
This works by directly changing files in `node-modules/`, where node will look to resolve dependencies.
|
85
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+
|
86
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```
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cd <your-dependency>
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npm run build-bundle
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cp /dist <mapintegratedvuer-path>/node_modules/@<your-npmhandle>/<your-dependency>/dist
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cd <mapintegratedvuer-path>
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npm run build-bundle
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cp /dist <sparc-app-path>/node_modules/@abi-software/mapintegratedvuer/dist
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yarn dev
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```
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95
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*Note: this assumes assets in the static folders shipped with the npm package will remain unchanged*
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96
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+
### 2. Use `yarn link`
|
97
|
+
This is a variant of option 1, where we use `yarn link` to create a symbolic link from mapintegratedvuer->spar-app
|
98
|
+
It reduces the number of copies to 1, but still requires 3 builds
|
99
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+
```
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cd <your-dependency>
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npm run build-bundle
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cp /dist <mapintegratedvuer-path>/node_modules/@<your-npmhandle>/<your-dependency>/dist
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cd <mapintegratedvuer-path>
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npm run build-bundle
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yarn link
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cd sparc-app
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yarn link @abi-software/mapintegratedvuer
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yarn dev
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```
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(npm link does not work without disabling es-lint, which we won't go into)
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+
|
112
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+
### 3. Publish own version of mapintegratedvuer
|
113
|
+
This method is the most time consuming and has the downside of populating the npm package's version history with builds.
|
114
|
+
Since it mimics the way `sparc-app` will use it, it's gauranteed to work.
|
115
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+
|
116
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+
```
|
117
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cd <your-dependency>
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npm run build-bundle
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npm publish --tag alpha
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cd mapintegratedvuer
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npm install @<your-npmhandle>/<your-dependency>@alpha
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```
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Edit mapintegratedvuer/package.json:
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Change `@abi-software/mapintegratedvuer` to `@<your-npm-handle>/mapintegratedvuer`
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```
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cd mapintegratedvuer
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npm run build-bundle
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npm publish --tag alpha
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```
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Edit sparc-app/pages/maps/index.vue
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Change `@abi-software/mapintegratedvuer` to `@<your-npm-handle>/mapintegratedvuer`
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```
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cd sparc-app
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yarn add @<your-npm-handle>/mapintegratedvuer@alpha
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yarn dev
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```
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## Documentation
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+
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144
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The documentation is developed with `vitepress` and `vuese`. Documentation pages are in the `docs` folder.
|
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+
|
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### To run in local development mode
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+
```bash
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npm run docs:watch
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```
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This will start the documentation server with `vitepress` on port `:5173` and watch the `FlatmapVuer` and `MultiFlatmapVuer` components changes.
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package/assets/styleguide.css
CHANGED
@@ -1,19 +1,19 @@
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:root {
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--white: #f4f4f4;
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--white: #ffffff;
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--black: #333333;
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--slate-grey: #606266;
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--pale-grey: #e4e7ed;
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--warm-purple: #9c2aa0;
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--grape: #5e2750;
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--very-light-pink: #cccccc;
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--black: #000000;
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--very-light-pink: #ebebeb;
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--brown-grey: #afafaf;
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--charcoal-grey: #4a4d4e;
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--brownish-grey: #666666;
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--brown-grey: #999999;
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--deep-sky-blue: #007aff;
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--turquoise-blue: #00b0ca;
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--vibrant-purple: #8300bf;
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}
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:root {
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--white: #f4f4f4;
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--white: #ffffff;
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--black: #333333;
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--slate-grey: #606266;
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--pale-grey: #e4e7ed;
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--warm-purple: #9c2aa0;
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--grape: #5e2750;
|
9
|
+
--very-light-pink: #cccccc;
|
10
|
+
--black: #000000;
|
11
|
+
--very-light-pink: #ebebeb;
|
12
|
+
--brown-grey: #afafaf;
|
13
|
+
--charcoal-grey: #4a4d4e;
|
14
|
+
--brownish-grey: #666666;
|
15
|
+
--brown-grey: #999999;
|
16
|
+
--deep-sky-blue: #007aff;
|
17
|
+
--turquoise-blue: #00b0ca;
|
18
|
+
--vibrant-purple: #8300bf;
|
19
|
+
}
|
package/cypress.config.js
CHANGED
@@ -1,23 +1,23 @@
|
|
1
|
-
|
2
|
-
export default {
|
3
|
-
defaultCommandTimeout: 10000,
|
4
|
-
reporter: "junit",
|
5
|
-
experimentalMemoryManagement: true,
|
6
|
-
numTestsKeptInMemory: 0,
|
7
|
-
reporter: "cypress-multi-reporters",
|
8
|
-
reporterOptions: {
|
9
|
-
configFile: "reporter-config.json",
|
10
|
-
},
|
11
|
-
component: {
|
12
|
-
viewportWidth: 1440,
|
13
|
-
viewportHeight: 900,
|
14
|
-
setupNodeEvents(on, config) {},
|
15
|
-
specPattern: "cypress/component/*.cy.js",
|
16
|
-
devServer: {
|
17
|
-
framework: "vue",
|
18
|
-
bundler: "vite",
|
19
|
-
},
|
20
|
-
},
|
21
|
-
video: true,
|
22
|
-
videoCompression: true,
|
23
|
-
};
|
1
|
+
|
2
|
+
export default {
|
3
|
+
defaultCommandTimeout: 10000,
|
4
|
+
reporter: "junit",
|
5
|
+
experimentalMemoryManagement: true,
|
6
|
+
numTestsKeptInMemory: 0,
|
7
|
+
reporter: "cypress-multi-reporters",
|
8
|
+
reporterOptions: {
|
9
|
+
configFile: "reporter-config.json",
|
10
|
+
},
|
11
|
+
component: {
|
12
|
+
viewportWidth: 1440,
|
13
|
+
viewportHeight: 900,
|
14
|
+
setupNodeEvents(on, config) {},
|
15
|
+
specPattern: "cypress/component/*.cy.js",
|
16
|
+
devServer: {
|
17
|
+
framework: "vue",
|
18
|
+
bundler: "vite",
|
19
|
+
},
|
20
|
+
},
|
21
|
+
video: true,
|
22
|
+
videoCompression: true,
|
23
|
+
};
|
package/dist/index.html
CHANGED
@@ -1,17 +1,17 @@
|
|
1
|
-
<!DOCTYPE html>
|
2
|
-
<html lang="en">
|
3
|
-
<head>
|
4
|
-
<meta charset="utf-8">
|
5
|
-
<meta http-equiv="X-UA-Compatible" content="IE=edge">
|
6
|
-
<meta name="viewport" content="width=device-width,initial-scale=1.0">
|
7
|
-
<link rel="icon" href="<%= BASE_URL %>favicon.ico">
|
8
|
-
<title>Physiome Portal</title>
|
9
|
-
</head>
|
10
|
-
<body>
|
11
|
-
<noscript>
|
12
|
-
<strong>We're sorry but Physiome Portal doesn't work properly without JavaScript enabled. Please enable it to continue.</strong>
|
13
|
-
</noscript>
|
14
|
-
<div id="app"></div>
|
15
|
-
<!-- built files will be auto injected -->
|
16
|
-
</body>
|
17
|
-
</html>
|
1
|
+
<!DOCTYPE html>
|
2
|
+
<html lang="en">
|
3
|
+
<head>
|
4
|
+
<meta charset="utf-8">
|
5
|
+
<meta http-equiv="X-UA-Compatible" content="IE=edge">
|
6
|
+
<meta name="viewport" content="width=device-width,initial-scale=1.0">
|
7
|
+
<link rel="icon" href="<%= BASE_URL %>favicon.ico">
|
8
|
+
<title>Physiome Portal</title>
|
9
|
+
</head>
|
10
|
+
<body>
|
11
|
+
<noscript>
|
12
|
+
<strong>We're sorry but Physiome Portal doesn't work properly without JavaScript enabled. Please enable it to continue.</strong>
|
13
|
+
</noscript>
|
14
|
+
<div id="app"></div>
|
15
|
+
<!-- built files will be auto injected -->
|
16
|
+
</body>
|
17
|
+
</html>
|