@abi-software/mapintegratedvuer 0.7.2-vue3.0-alpha.0 → 1.0.1

package/src/components/MapContent.vue

@@ -1,334 +1,329 @@
-<template>
-    <div
-      ref="MapApp"
-      v-loading="!isReady"
-      class="mapcontent"
-      element-loading-text="Loading..."
-      element-loading-background="rgba(0, 0, 0, 0.3)"
-    >
-      <map-svg-sprite-color/>
-      <SplitFlow
-        v-if="isReady"
-        @onFullscreen="onFullscreen"
-        :state="stateToSet"
-        ref="flow"
-        @vue:mounted="flowMounted"
-      />
-    </div>
-</template>
-
-<script>
-/* eslint-disable no-alert, no-console */
-import SplitFlow from './SplitFlow.vue';
-import EventBus from './EventBus';
-import { mapStores } from 'pinia';
-import { useSettingsStore } from '../stores/settings';
-import { findSpeciesKey } from './scripts/utilities.js';
-import { MapSvgSpriteColor} from '@abi-software/svg-sprite';
-import { initialState } from "./scripts/utilities.js";
-import RetrieveContextCardMixin from "../mixins/RetrieveContextCardMixin.js"
-import {
-  ElLoading as Loading
-} from "element-plus";
-
-/**
- * Content of the app. More work flows will be added here.
- */
-export default {
-  name: "MapContent",
-  components: {
-    MapSvgSpriteColor,
-    Loading,
-    SplitFlow,
-  },
-  mixins: [RetrieveContextCardMixin],
-  props: {
-    /**
-     * A link (URL) to share.
-     */
-    shareLink: {
-      type: String,
-      default: undefined
-    },
-    /**
-     * State containing state of the scaffold.
-     */
-    state: {
-      type: Object,
-      default: undefined
-    },
-    /**
-     * The options include APIs and Keys.
-     */
-    options: {
-      type: Object,
-      default: () => {},
-      required: true
-    },
-    /**
-     * New option to start the map in AC, FC or WholeBody.
-     */
-    startingMap: {
-      type: String,
-      default: "AC"
-    }
-  },
-  data: function () {
-    return {
-      isReady: false,
-      initialState: undefined,
-    }
-  },
-  methods: {
-    /**
-     * @vuese
-     * Function to check whether it is in fullscreen mode or not.
-     *
-     */
-    isFullscreen: function(){
-      return (document.fullscreenElement || document.webkitFullscreenElement ||
-        document.mozFullScreenElement || document.msFullscreenElement )
-    },
-    /**
-     * @vuese
-     * Function to toggle fullscreen.
-     * @arg fullscreenRequest
-     */
-    onFullscreen: function(fullscreenReq) {
-      //If a request is sent, try it
-      if (fullscreenReq !== undefined){
-        if (fullscreenReq && !this.isFullscreen()){
-          this.goFullscreen()
-        }
-        if(!fullscreenReq && this.isFullscreen()){
-          this.leaveFullscreen()
-        }
-      }
-      // Else we toggle fullscreen
-      else{
-        if(this.isFullscreen()){
-          this.leaveFullscreen()
-        } else {
-          this.goFullscreen()
-        }
-      }
-    },
-    /**
-     * @vuese
-     * Function to leave fullscreen mode.
-     */
-    leaveFullscreen: function(){
-      if (this.isFullscreen()) {
-        if (document.exitFullscreen) {
-          document.exitFullscreen();
-        } else if (document.mozCancelFullScreen) { /* Firefox */
-          document.mozCancelFullScreen();
-        } else if (document.webkitExitFullscreen) { /* Chrome, Safari and Opera */
-          document.webkitExitFullscreen();
-        } else if (document.msExitFullscreen) { /* IE/Edge */
-          document.msExitFullscreen();
-        }
-      }
-    },
-    /**
-     * @vuese
-     * Function to go to fullscreen mode.
-     */
-    goFullscreen: function(){
-      let mapApp = this.$refs.MapApp;
-      if (mapApp.requestFullscreen) {
-        mapApp.requestFullscreen();
-      } else if (mapApp.mozRequestFullScreen) { /* Firefox */
-        mapApp.mozRequestFullScreen();
-      } else if (mapApp.webkitRequestFullscreen) { /* Chrome, Safari and Opera */
-        mapApp.webkitRequestFullscreen();
-      } else if (parent.msRequestFullscreen) { /* IE/Edge */
-        mapApp.msRequestFullscreen();
-      }
-    },
-    setState: function(state){
-      return this.$refs.flow.setState(state);
-    },
-    getState: function(){
-      return this.$refs.flow.getState();
-    },
-    /**
-     * @vuese
-     * Provide a way to set the current view, this is currently limited
-     * to setting view for flatmapm, multiflatmap or scaffold.
-     * In the case of the multiflatmap, it will not create a new entry and
-     * instead change the current entry by setting the state.
-     * @arg state
-     */
-    setCurrentEntry: async function(state) {
-      if (state && state.type) {
-        if (state.type === "Scaffold" && state.url) {
-          //State for scaffold containing the following items:
-          //  label - Setting the name of the dialog
-          //  region - Which region/group currently focusing on
-          //  resource - the url to metadata
-          //  state - state to restore (viewport)
-          //  viewUrl - relative path of the view file to metadata
-          let newView = {
-            type: state.type,
-            label: state.label,
-            region: state.region,
-            resource: state.url,
-            state: state.state,
-            viewUrl: state.viewUrl
-          };
-          // Add content from scicrunch for the context card
-          const contextCardInfo = await this.retrieveContextCardFromUrl(state.url);
-          newView = {...newView, ...contextCardInfo};
-          this.$refs.flow.createNewEntry(newView);
-        } else if (state.type === "MultiFlatmap") {
-          //State for scaffold containing the following items:
-          //  label - Setting the name of the dialog
-          //  taxo - taxo of species to set
-          //  biologicalSex - biological sex to be displayed (PATO)
-          //  organ - Target organ, flatmap will conduct a local search
-          //          using this
-
-          //Look for the key in the available species array,
-          //it will use the taxo and biologicalSex as hints.
-          const key = findSpeciesKey(state);
-          if (key) {
-            const currentState = this.getState();
-            if (currentState && currentState.entries) {
-              for (let i = 0; i < currentState.entries.length; i++) {
-                const entry =  currentState.entries[i];
-                if (entry.type === "MultiFlatmap") {
-                  entry.resource = key;
-                  entry.state = {species: key};
-                  if (state.organ || state.uuid) {
-                    entry.state.state = { searchTerm: state.organ, uuid: state.uuid };
-                    //if it contains an uuid, use the taxo to help identify if the uuid
-                    //is current
-                    if (state.uuid) entry.state.state.entry = state.taxo;
-                  }
-                  this.$refs.flow.setState(currentState);
-                  //Do not create a new entry, instead set the multiflatmap viewer
-                  //to the primary slot
-                  this.$refs.flow.setIdToPrimaryPane(entry.id);
-                  break;
-                }
-              }
-            }
-          }
-        }
-        else if (state.type === "Flatmap") {
-          //State for scaffold containing the following items:
-          //  label - Setting the name of the dialog
-          //  region - Which region/group currently focusing on
-          //  resource - the url to metadata
-          //  state - state to restore (viewport)
-          //  viewUrl - relative path of the view file to metadata
-          const newView = {
-            type: state.type,
-            resource: state.resource,
-            state: state.state,
-            label: state.label
-          };
-          this.$refs.flow.createNewEntry(newView);
-        }
-      }
-    },
-    /**
-     * @vuese
-     * Open the sidebar with the specified facets and query.
-     * @arg facets, query
-     */
-    openSearch: function(facets, query) {
-      return this.$refs.flow.openSearch(facets, query);
-    },
-    /**
-     * @vuese
-     * Function to run when the component is mounted.
-     */
-    flowMounted: function () {
-      this._flowMounted = true;
-      /**
-       * This event emit when the component is mounted.
-       */
-      this.$emit("isReady");
-    },
-  },
-  computed: {
-    ...mapStores(useSettingsStore),
-    stateToSet() {
-      return this.state ? this.state : this.initialState;
-    },
-  },
-  watch: {
-    "shareLink" : {
-      handler: function (newLink) {
-        this.settingsStore.updateShareLink(newLink);
-      },
-      immediate: true,
-    },
-  },
-  beforeMount: function() {
-    if (this.options) {
-      // Split options prop up to commit to the store
-      this.options.sparcApi ? this.settingsStore.updateSparcAPI(this.options.sparcApi) : null
-      this.options.algoliaIndex ? this.settingsStore.updateAlgoliaIndex(this.options.algoliaIndex) : null
-      this.options.algoliaKey ? this.settingsStore.updateAlgoliaKey(this.options.algoliaKey) : null
-      this.options.algoliaId ? this.settingsStore.updateAlgoliaId(this.options.algoliaId) : null
-      this.options.pennsieveApi ? this.settingsStore.updatePennsieveApi(this.options.pennsieveApi) : null
-      this.options.flatmapAPI ? this.settingsStore.updateFlatmapAPI(this.options.flatmapAPI) : null,
-      this.options.nlLinkPrefix ? this.settingsStore.updateNLLinkPrefix(this.options.nlLinkPrefix) : null
-      this.options.rootUrl ? this.settingsStore.updateRootUrl(this.options.rootUrl) : null
-    }
-  },
-  mounted: async function() {
-    EventBus.on("updateShareLinkRequested", () => {
-      /**
-       * This event emits when the share link is requested.
-       */
-      this.$emit("updateShareLinkRequested");
-    });
-    if (!this.state) {
-      this.initialState = await initialState(this.startingMap, this.options.sparcApi);
-    }
-    this.isReady = true;
-  }
-}
-
-</script>
-
-<style scoped lang="scss">
-
-:deep(.el-loading-spinner) {
-  .path {
-    stroke: $app-primary-color;
-  }
-  .el-loading-text {
-    color: $app-primary-color;
-  }
-}
-
-.map-help-dialog {
-  position: fixed;
-  z-index: 20;
-  bottom: 30px;
-  right: 30px;
-}
-
-.mapcontent {
-  height: 100%;
-  width:100%;
-  z-index:1;
-}
-
-</style>
-
-<style lang="scss">
-
-.mapcontent {
-  --el-color-primary: #8300BF;
-  --el-color-primary-light-7: #dab3ec;
-  --el-color-primary-light-8: #e6ccf2;
-  --el-color-primary-light-9: #f3e6f9;
-}
-
+<template>
+    <div
+      ref="MapApp"
+      v-loading="!isReady"
+      class="mapcontent"
+      element-loading-text="Loading..."
+      element-loading-background="rgba(0, 0, 0, 0.3)"
+    >
+      <map-svg-sprite-color/>
+      <SplitFlow
+        v-if="isReady"
+        @onFullscreen="onFullscreen"
+        :state="stateToSet"
+        ref="flow"
+        @vue:mounted="flowMounted"
+      />
+    </div>
+</template>
+
+<script>
+/* eslint-disable no-alert, no-console */
+import SplitFlow from './SplitFlow.vue';
+import EventBus from './EventBus';
+import { mapStores } from 'pinia';
+import { useSettingsStore } from '../stores/settings';
+import { findSpeciesKey } from './scripts/utilities.js';
+import { MapSvgSpriteColor} from '@abi-software/svg-sprite';
+import { initialState } from "./scripts/utilities.js";
+import {
+  ElLoading as Loading
+} from "element-plus";
+
+/**
+ * Content of the app. More work flows will be added here.
+ */
+export default {
+  name: "MapContent",
+  components: {
+    MapSvgSpriteColor,
+    Loading,
+    SplitFlow,
+  },
+  props: {
+    /**
+     * A link (URL) to share.
+     */
+    shareLink: {
+      type: String,
+      default: undefined
+    },
+    /**
+     * State containing state of the scaffold.
+     */
+    state: {
+      type: Object,
+      default: undefined
+    },
+    /**
+     * The options include APIs and Keys.
+     */
+    options: {
+      type: Object,
+      default: () => {},
+      required: true
+    },
+    /**
+     * New option to start the map in AC, FC or WholeBody.
+     */
+    startingMap: {
+      type: String,
+      default: "AC"
+    }
+  },
+  data: function () {
+    return {
+      isReady: false,
+      initialState: undefined,
+    }
+  },
+  methods: {
+    /**
+     * @vuese
+     * Function to check whether it is in fullscreen mode or not.
+     *
+     */
+    isFullscreen: function(){
+      return (document.fullscreenElement || document.webkitFullscreenElement ||
+        document.mozFullScreenElement || document.msFullscreenElement )
+    },
+    /**
+     * @vuese
+     * Function to toggle fullscreen.
+     * @arg fullscreenRequest
+     */
+    onFullscreen: function(fullscreenReq) {
+      //If a request is sent, try it
+      if (fullscreenReq !== undefined){
+        if (fullscreenReq && !this.isFullscreen()){
+          this.goFullscreen()
+        }
+        if(!fullscreenReq && this.isFullscreen()){
+          this.leaveFullscreen()
+        }
+      }
+      // Else we toggle fullscreen
+      else{
+        if(this.isFullscreen()){
+          this.leaveFullscreen()
+        } else {
+          this.goFullscreen()
+        }
+      }
+    },
+    /**
+     * @vuese
+     * Function to leave fullscreen mode.
+     */
+    leaveFullscreen: function(){
+      if (this.isFullscreen()) {
+        if (document.exitFullscreen) {
+          document.exitFullscreen();
+        } else if (document.mozCancelFullScreen) { /* Firefox */
+          document.mozCancelFullScreen();
+        } else if (document.webkitExitFullscreen) { /* Chrome, Safari and Opera */
+          document.webkitExitFullscreen();
+        } else if (document.msExitFullscreen) { /* IE/Edge */
+          document.msExitFullscreen();
+        }
+      }
+    },
+    /**
+     * @vuese
+     * Function to go to fullscreen mode.
+     */
+    goFullscreen: function(){
+      let mapApp = this.$refs.MapApp;
+      if (mapApp.requestFullscreen) {
+        mapApp.requestFullscreen();
+      } else if (mapApp.mozRequestFullScreen) { /* Firefox */
+        mapApp.mozRequestFullScreen();
+      } else if (mapApp.webkitRequestFullscreen) { /* Chrome, Safari and Opera */
+        mapApp.webkitRequestFullscreen();
+      } else if (parent.msRequestFullscreen) { /* IE/Edge */
+        mapApp.msRequestFullscreen();
+      }
+    },
+    setState: function(state){
+      return this.$refs.flow.setState(state);
+    },
+    getState: function(){
+      return this.$refs.flow.getState();
+    },
+    /**
+     * @vuese
+     * Provide a way to set the current view, this is currently limited
+     * to setting view for flatmapm, multiflatmap or scaffold.
+     * In the case of the multiflatmap, it will not create a new entry and
+     * instead change the current entry by setting the state.
+     * @arg state
+     */
+    setCurrentEntry: function(state) {
+      if (state && state.type) {
+        if (state.type === "Scaffold" && state.url) {
+          //State for scaffold containing the following items:
+          //  label - Setting the name of the dialog
+          //  region - Which region/group currently focusing on
+          //  resource - the url to metadata
+          //  state - state to restore (viewport)
+          //  viewUrl - relative path of the view file to metadata
+          const newView = {
+            type: state.type,
+            label: state.label,
+            region: state.region,
+            resource: state.url,
+            state: state.state,
+            viewUrl: state.viewUrl
+          };
+          this.$refs.flow.createNewEntry(newView);
+        } else if (state.type === "MultiFlatmap") {
+          //State for scaffold containing the following items:
+          //  label - Setting the name of the dialog
+          //  taxo - taxo of species to set
+          //  biologicalSex - biological sex to be displayed (PATO)
+          //  organ - Target organ, flatmap will conduct a local search
+          //          using this
+
+          //Look for the key in the available species array,
+          //it will use the taxo and biologicalSex as hints.
+          const key = findSpeciesKey(state);
+          if (key) {
+            const currentState = this.getState();
+            if (currentState && currentState.entries) {
+              for (let i = 0; i < currentState.entries.length; i++) {
+                const entry =  currentState.entries[i];
+                if (entry.type === "MultiFlatmap") {
+                  entry.resource = key;
+                  entry.state = {species: key};
+                  if (state.organ || state.uuid) {
+                    entry.state.state = { searchTerm: state.organ, uuid: state.uuid };
+                    //if it contains an uuid, use the taxo to help identify if the uuid
+                    //is current
+                    if (state.uuid) entry.state.state.entry = state.taxo;
+                  }
+                  this.$refs.flow.setState(currentState);
+                  //Do not create a new entry, instead set the multiflatmap viewer
+                  //to the primary slot
+                  this.$refs.flow.setIdToPrimaryPane(entry.id);
+                  break;
+                }
+              }
+            }
+          }
+        }
+        else if (state.type === "Flatmap") {
+          //State for scaffold containing the following items:
+          //  label - Setting the name of the dialog
+          //  region - Which region/group currently focusing on
+          //  resource - the url to metadata
+          //  state - state to restore (viewport)
+          //  viewUrl - relative path of the view file to metadata
+          const newView = {
+            type: state.type,
+            resource: state.resource,
+            state: state.state,
+            label: state.label
+          };
+          this.$refs.flow.createNewEntry(newView);
+        }
+      }
+    },
+    /**
+     * @vuese
+     * Open the sidebar with the specified facets and query.
+     * @arg facets, query
+     */
+    openSearch: function(facets, query) {
+      return this.$refs.flow.openSearch(facets, query);
+    },
+    /**
+     * @vuese
+     * Function to run when the component is mounted.
+     */
+    flowMounted: function () {
+      this._flowMounted = true;
+      /**
+       * This event emit when the component is mounted.
+       */
+      this.$emit("isReady");
+    },
+  },
+  computed: {
+    ...mapStores(useSettingsStore),
+    stateToSet() {
+      return this.state ? this.state : this.initialState;
+    },
+  },
+  watch: {
+    "shareLink" : {
+      handler: function (newLink) {
+        this.settingsStore.updateShareLink(newLink);
+      },
+      immediate: true,
+    },
+  },
+  beforeMount: function() {
+    if (this.options) {
+      // Split options prop up to commit to the store
+      this.options.sparcApi ? this.settingsStore.updateSparcAPI(this.options.sparcApi) : null
+      this.options.algoliaIndex ? this.settingsStore.updateAlgoliaIndex(this.options.algoliaIndex) : null
+      this.options.algoliaKey ? this.settingsStore.updateAlgoliaKey(this.options.algoliaKey) : null
+      this.options.algoliaId ? this.settingsStore.updateAlgoliaId(this.options.algoliaId) : null
+      this.options.pennsieveApi ? this.settingsStore.updatePennsieveApi(this.options.pennsieveApi) : null
+      this.options.flatmapAPI ? this.settingsStore.updateFlatmapAPI(this.options.flatmapAPI) : null,
+      this.options.nlLinkPrefix ? this.settingsStore.updateNLLinkPrefix(this.options.nlLinkPrefix) : null
+      this.options.rootUrl ? this.settingsStore.updateRootUrl(this.options.rootUrl) : null
+    }
+  },
+  mounted: async function() {
+    EventBus.on("updateShareLinkRequested", () => {
+      /**
+       * This event emits when the share link is requested.
+       */
+      this.$emit("updateShareLinkRequested");
+    });
+    if (!this.state) {
+      this.initialState = await initialState(this.startingMap, this.options.sparcApi);
+    }
+    this.isReady = true;
+  }
+}
+
+</script>
+
+<style scoped lang="scss">
+
+:deep(.el-loading-spinner) {
+  .path {
+    stroke: $app-primary-color;
+  }
+  .el-loading-text {
+    color: $app-primary-color;
+  }
+}
+
+.map-help-dialog {
+  position: fixed;
+  z-index: 20;
+  bottom: 30px;
+  right: 30px;
+}
+
+.mapcontent {
+  height: 100%;
+  width:100%;
+  z-index:1;
+}
+
+</style>
+
+<style lang="scss">
+
+.mapcontent {
+  --el-color-primary: #8300BF;
+  --el-color-primary-light-7: #dab3ec;
+  --el-color-primary-light-8: #e6ccf2;
+  --el-color-primary-light-9: #f3e6f9;
+}
+
 </style>