@abi-software/mapintegratedvuer 0.7.2-vue3.0-alpha.0 → 1.0.1

package/src/components/SimulatedData.js

@@ -1,721 +1,721 @@
-const nerveMaps = [
-  {
-      "id": "ilxtr:neuron-type-keast-13",
-      "centrelines": [
-          "n_71"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-2",
-      "centrelines": [
-          "bladder_n"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-3",
-      "centrelines": [
-          "bladder_n",
-          "hypogastric_n"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-15",
-      "centrelines": [
-          "n_73"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-1",
-      "centrelines": [
-          "bladder_n"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-7",
-      "centrelines": [
-          "L1_ventral_root_ramus",
-          "L1_spinal_n-1",
-          "lumbar_splanchnic_n",
-          "L2_spinal_n",
-          "L2_ventral_root_ramus"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-9",
-      "centrelines": [
-          "L6_spinal_n-1",
-          "L6_ventral_root",
-          "pudendal_n",
-          "L5_spinal_n",
-          "L5_ventral_root"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-10",
-      "centrelines": [
-          "S1_dorsal_root",
-          "S1_spinal_n-2",
-          "pelvic_splanchnic_n",
-          "L6_spinal_n-2",
-          "L6_dorsal_root",
-          "bladder_n"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-11",
-      "centrelines": [
-          "lumbar_splanchnic_n",
-          "L2_spinal_n",
-          "L1_spinal_n-1",
-          "hypogastric_n",
-          "bladder_n",
-          "L1_dorsal_root",
-          "L2_dorsal_root"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-12",
-      "centrelines": [
-          "L6_spinal_n-1",
-          "L6_dorsal_root",
-          "pudendal_n",
-          "S1_spinal_n-1",
-          "S1_dorsal_root"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-8",
-      "centrelines": [
-          "L1_ventral_root_paravertebral_ganglion",
-          "L1-L2_interganglionic_segment",
-          "sympathetic_trunk_T13-L1",
-          "L2_ventral_root_paravertebral_ganglion",
-          "sympathetic_trunk_L2-L3",
-          "sympathetic_trunk_L4-L5",
-          "sympathetic_trunk_L3-L4",
-          "sympathetic_trunk_L5-L6",
-          "sympathetic_trunk_T12-T13"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-20",
-      "centrelines": [
-          "T1_T2_cns",
-          "C8_T1_cns",
-          "T2_T3_cns",
-          "T10_T11_cns",
-          "T9_T10_cns",
-          "T11_T12_cns",
-          "T8_T9_cns",
-          "C7_C8_cns",
-          "C6_C7_cns",
-          "C4_C5_cns",
-          "C3_C4_cns",
-          "C5_C6_cns",
-          "medulla_C1_cns",
-          "pons_medulla_cns",
-          "C1_C2_cns",
-          "T5_T6_cns",
-          "T4_T5_cns",
-          "T6_T7_cns",
-          "L3_L4_cns",
-          "L2_L3_cns",
-          "L4_L5_cns",
-          "L5_L6_cns",
-          "T13_L1_cns",
-          "T12_T13_cns",
-          "L1_L2_cns",
-          "T3_T4_cns",
-          "n_69",
-          "C2_C3_cns",
-          "T7_T8_cns"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-16",
-      "centrelines": [
-          "n_74"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-4",
-      "centrelines": [
-          "sympathetic_trunk_L6-S1",
-          "L6_gray_ramus-spinal_n",
-          "sympathetic_trunk_L5-L6",
-          "S1_gray_ramus-spinal_n",
-          "S1_spinal_n-2",
-          "pelvic_splanchnic_n",
-          "L6_spinal_n-2",
-          "L1-L2_interganglionic_segment",
-          "sympathetic_trunk_T13-L1",
-          "sympathetic_trunk_L2-L3",
-          "bladder_n",
-          "sympathetic_trunk_L4-L5",
-          "sympathetic_trunk_L3-L4",
-          "sympathetic_trunk_T12-T13"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-17",
-      "centrelines": [
-          "n_75"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-5",
-      "centrelines": [
-          "S1_ventral_root",
-          "S1_spinal_n-2",
-          "pelvic_splanchnic_n",
-          "L6_spinal_n-2",
-          "L6_ventral_root"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-18",
-      "centrelines": [
-          "n_70"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-6",
-      "centrelines": [
-          "L1_ventral_root_ramus",
-          "L1_spinal_n-1",
-          "lumbar_splanchnic_n",
-          "L2_spinal_n",
-          "hypogastric_n",
-          "L2_ventral_root_ramus"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-19",
-      "centrelines": [
-          "n_69"
-      ]
-  },
-  {
-      "id": "ilxtr:neuron-type-keast-14",
-      "centrelines": [
-          "n_72"
-      ]
-  }
-];
-
-
-
-/* eslint-disable no-alert, no-console */
-function getGenericMarkerInfo(term ,label, dataset, scaffold, simulations) {
-  let data = {};
-  data.dataset = dataset;
-  data.scaffold = scaffold;
-  data.simulations = simulations;
-  if (label)
-    data.title = label;
-  else
-    data.title = term;
-  data.description = "";
-  data.actions = [];
-  if (term) {
-    switch (term) {
-    case "ICN":
-        data.title = "RNA";
-        data.description = "The distribution of neurons in the intrinsic cardiac nervous system (ICN) were mapped and visualized in a 3D reconstruction of a male rat heart.";
-        data.actions = {
-          search: {
-            title: "Explore data",
-            resource: "icn",
-            type: "Search",
-            label: "ICN",
-            filter: {
-              facet: 'genotype',
-              term: 'heart'
-            },
-          },
-          plot: {
-            title: "View plot",
-            label: "ICN",
-            resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/ISAN/csv-data/use-case-4/RNA_Seq.csv",
-            type: "Plot",
-            plotType: "heatmap",
-            datasetTitle: "Molecular Phenotype Distribution of Single Rat Intracardiac Neurons",
-            datasetDescription: "Images collected from serial cryostat sectioning of a cryopreserved heart was used to reconstruct the 3D context. Transcriptional profiles taken from isolated single neurons and mapped back into the previously generated 3D context.",
-            datasetUrl: "https://discover.pennsieve.io/datasets/29",
-            datasetImage: "https://assets.discover.pennsieve.io/dataset-assets/29/6/revisions/1/banner.jpg"
-          },
-        };
-        break;
-      default:
-        break;
-    }
-  } else {
-    data.actions = [];
-  }
-  return data;
-}
-
-
-function getHumanData(term, label, dataset, scaffold, simulations) {
-  if (term || label) {
-    let data = {};
-    switch (term) {
-      case "UBERON:0001157":
-        data.title = "Colon";
-        data.description = "";
-        data.actions = {
-          search: {
-            title: "Explore data",
-            label: "Colon",
-            resource: "https://sparc.science/data?type=dataset&q=colon",
-            type: "Search",
-            filter: {
-              facet: 'genotype',
-              term: 'colon'
-            },
-          },
-          scaffold: {
-            title: "View 3D scaffold",
-            label: "Colon",
-            resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Colon/human/humanColon_metadata.json",
-            type: "Scaffold"
-          },
-        };
-        break;
-        case "UBERON:0000948":
-        case "UBERON:0002080": {
-          data.title = "Heart";
-          data.description = "";
-          data.actions = {
-            search: {
-              title: "Explore data",
-              label: "Heart",
-              resource: "https://sparc.science/data?type=dataset&q=colon",
-              type: "Search",
-              filter: {
-                facet: 'genotype',
-                term: 'heart'
-              },
-            },
-            scaffold: {
-              title: "View 3D scaffold",
-              label: "Heart",
-              resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Heart/human/humanHeart_metadata.json",
-              type: "Scaffold"
-            },
-          };
-        }
-        break;
-        case "UBERON:0002048":
-            data.title = "Lung";
-            data.description = "";
-            data.actions = {
-              search: {
-                title: "Explore data",
-                label: "Lung",
-                resource: "https://sparc.science/data?type=dataset&q=lung",
-                type: "Search"
-              },
-              scaffold: {
-                title: "View 3D scaffold",
-                label: "Lung",
-                resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Lungs/human/humanLeftLung_metadata.json",
-                type: "Scaffold"
-              },
-            };
-            break;
-      default:
-        data = getGenericMarkerInfo(term, label, dataset, scaffold, simulations);
-        break;
-    }
-    return data;
-  }
-  return undefined;
-}
-
-function getRatData(term, label, dataset, scaffold, simulations) {
-  if (term || label) {
-    let data = {};
-    switch (term) {
-      case "UBERON:0000948":
-      case "UBERON:0002080":
-        if (!simulations) {
-          data.title = "Heart";
-          data.description = "";
-          data.actions = {
-            search: {
-              title: "Explore data",
-              label: "Heart",
-              resource: "https://sparc.science/data?type=dataset&q=heart",
-              type: "Search",
-              filter: {
-                facet: 'genotype',
-                term: 'heart'
-              },
-            },
-            scaffold: {
-              title: "View 3D scaffold",
-              label: "Heart",
-              resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Heart/rat/ratHeart_metadata.json",
-              type: "Scaffold"
-            },
-            simulation: {
-              title: "Explore simulations",
-              label: "Heart",
-              resource: "https://sparc.science/data?type=simulation&q=heart",
-              type: "URL"
-            },
-          };
-        } else {
-          data = getGenericMarkerInfo(term, label, dataset, scaffold, simulations);
-        }
-        break;
-      case "UBERON:0001156":
-        data.title = "Colon";
-        data.description = "";
-        data.actions = {
-          search: {
-            title: "Explore data",
-            label: "Colon",
-            resource: "https://sparc.science/data?type=dataset&q=colon",
-            type: "Search"
-          },
-        };
-        break;
-        case "UBERON:0002108":
-          data.title = "Small intestines";
-          data.description = "";
-          data.actions = {
-            search: {
-              title: "Explore data",
-              label: "Colon",
-              resource: "https://sparc.science/data?type=dataset&q=small+intestines",
-              type: "Search"
-            },
-          };
-          break;
-        case "UBERON:0001255":
-          data.title = "Urinary bladder";
-          data.description = "";
-          data.actions = {
-            search: {
-              title: "Explore data",
-              label: "Urinary Bladder",
-              resource: "https://sparc.science/data?type=dataset&q=bladder",
-              type: "Search"
-            },
-            scaffold: {
-              title: "View 3D scaffold",
-              label: "Bladder",
-              resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Bladder/rat/ratBladder_metadata.json",
-              type: "Scaffold"
-            },
-          };
-        break;
-        case "UBERON:0002048":
-          data.title = "Lung";
-          data.description = "";
-          data.actions = {
-            search: {
-              title: "Explore data",
-              label: "Lung",
-              resource: "https://sparc.science/data?type=dataset&q=lung",
-              type: "Search"
-            },
-          };
-          break;
-      case "ICN":
-        data.title = "RNA";
-        data.description = "The distribution of neurons in the intrinsic cardiac nervous system (ICN) were mapped and visualized in a 3D reconstruction of a male rat heart.";
-        data.actions = {
-          search: {
-            title: "Explore data",
-            resource: "icn",
-            type: "Search"
-          },
-          plot: {
-            title: "View plot",
-            label: "ICN",
-            resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/ISAN/csv-data/use-case-4/RNA_Seq.csv",
-            type: "Plot",
-            plotType: "heatmap",
-            datasetTitle: "Molecular Phenotype Distribution of Single Rat Intracardiac Neurons",
-            datasetDescription: "Images collected from serial cryostat sectioning of a cryopreserved heart was used to reconstruct the 3D context. Transcriptional profiles taken from isolated single neurons and mapped back into the previously generated 3D context.",
-            datasetUrl: "https://discover.pennsieve.io/datasets/29",
-            datasetImage: "https://assets.discover.pennsieve.io/dataset-assets/29/6/revisions/1/banner.jpg"
-          },
-        };
-        break;
-      case "UBERON:0000945":
-      case "UBERON:0001160":
-      case "UBERON:0001161":
-        data.title = "Stomach";
-        data.description = "";
-        data.actions = {
-          search: {
-            title: "Explore data",
-            label: "Stomach",
-            resource: "https://sparc.science/data?type=dataset&q=stomach",
-            type: "Search"
-          },
-          scaffold: {
-            title: "View 3D scaffold",
-            label: "Stomach",
-            resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Stomach/rat/ratStomach_metadata.json",
-            type: "Scaffold"
-          },
-        };
-        break;
-      case "UBERON:0001759":
-        if (label)
-          data.title = label;
-        else
-          data.title = "Vagus nerve";
-        data.actions = {
-          search: {
-            title: "Explore data",
-            label: "Vagus nerve",
-            resource: "https://sparc.science/data?type=dataset&q=vagus+nerve",
-            type: "Search"
-          },
-          simulation: {
-            title: "Explore simulations",
-            label: "Vagus nerve",
-            resource: "https://sparc.science/data?type=simulation&q=vagus%20nerve",
-            type: "simulation"
-          },
-        };
-        break;
-      default:
-        data = getGenericMarkerInfo(term, label, dataset, scaffold, simulations);
-        break;
-    }
-    return data;
-  }
-  return undefined;
-}
-
-function getMouseData(term, label, dataset, scaffold, simulations) {
-  if (term || label) {
-    let data = {};
-    switch (term) {
-      case "UBERON:0001156":
-        data.title = "Colon";
-        data.description = "";
-        data.actions = {
-          search: {
-            title: "Explore data",
-            label: "Colon",
-            resource: "https://sparc.science/data?type=dataset&q=colon",
-            type: "Search"
-          },
-          scaffold: {
-            title: "View 3D scaffold",
-            label: "Colon",
-            resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Colon/mouse/mouseColon_metadata.json",
-            type: "Scaffold"
-          },
-        };
-        break;
-      case "UBERON:0002048":
-        data.title = "Lung";
-        data.description = "";
-        data.actions = {
-          search: {
-            title: "Explore data",
-            label: "Lung",
-            resource: "https://sparc.science/data?type=dataset&q=lung",
-            type: "Search"
-          },
-          scaffold: {
-            title: "View 3D scaffold",
-            label: "Lung",
-            resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Lungs/mouse/mouseLeftLung_metadata.json",
-            type: "Scaffold"
-          },
-        };
-        break;
-        case "UBERON:0002108":
-          data.title = "Small intestines";
-          data.description = "";
-          data.actions = {
-            search: {
-              title: "Explore data",
-              label: "Colon",
-              resource: "https://sparc.science/data?type=dataset&q=small+intestines",
-              type: "Search"
-            },
-          };
-          break;
-      default:
-        data = getGenericMarkerInfo(term, label, dataset, scaffold, simulations);
-        break;
-    }
-    return data;
-  }
-  return undefined;
-}
-
-function getPigData(term, label, dataset, scaffold, simulations) {
-  if (term || label) {
-    let data = {};
-    switch (term) {
-      case "UBERON:0008972":
-        data.title = "Colon";
-        data.description = "";
-        data.actions = {
-          search: {
-            title: "Explore data",
-            label: "Colon",
-            resource: "https://sparc.science/data?type=dataset&q=colon",
-            type: "Search"
-          },
-          scaffold: {
-            title: "View 3D scaffold",
-            label: "Colon",
-            resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Colon/pig/pigColon_metadata.json",
-            type: "Scaffold"
-          },
-        };
-        break;
-        case "UBERON:0002108":
-          data.title = "Small intestines";
-          data.description = "";
-          data.actions = {
-            search: {
-              title: "Explore data",
-              label: "Colon",
-              resource: "https://sparc.science/data?type=dataset&q=small+intestines",
-              type: "Search"
-            },
-          };
-          break;
-          case "UBERON:0000948":
-            case "UBERON:0002080": {
-              data.title = "Heart";
-              data.description = "";
-              data.actions = {
-                search: {
-                  title: "Explore data",
-                  label: "Heart",
-                  resource: "https://sparc.science/data?type=dataset&q=colon",
-                  type: "Search",
-                  filter: {
-                    facet: 'genotype',
-                    term: 'heart'
-                  },
-                },
-                scaffold: {
-                  title: "View 3D scaffold",
-                  label: "Heart",
-                  resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Heart/pig/pigHeart_metadata.json",
-                  type: "Scaffold"
-                },
-              };
-            }
-            break;
-      default:
-        data = getGenericMarkerInfo(term, label, dataset, scaffold, simulations);
-        break;
-    }
-    return data;
-  }
-  return undefined;
-}
-
-function simulatedData(term, taxonomy, label, dataset, scaffold, simulations) {
-  switch (taxonomy) {
-    case "NCBITaxon:9606":
-        return getHumanData(term, label, dataset, scaffold, simulations);
-    case "NCBITaxon:9823":
-        return getPigData(term, label, dataset, scaffold, simulations);
-    case "NCBITaxon:10090":
-      return getMouseData(term, label, dataset, scaffold, simulations);
-    case "NCBITaxon:10114":
-      return getRatData(term, label, dataset, scaffold, simulations);
-    default:
-      return getGenericMarkerInfo(term, taxonomy, label, dataset, scaffold, simulations);
-  }
-}
-
-function getRatTerms() {
-  return [
-    {id: "UBERON:0000948", name: "Heart", type:"simulation"},
-    {id: "UBERON:0001156", name: "Colon", type:"simulation"},
-    {id: "UBERON:0001255", name: "Bladder", type:"simulation"},
-    {id: "UBERON:0000945", name: "Stomach", type:"simulation"},
-    {id: "UBERON:0001759", name: "Vagus nerve", type:"simulation"},
-    {id: "UBERON:0002108", name: "Small intestines", type:"simulation"},
-    {id: "UBERON:0002107", name: "Liver", type:"simulation"},
-  ];
-}
-
-export function getAvailableTermsForSpecies() {
-  return getRatTerms();
-}
-
-// Find the id/centre lines for the matchin centre lines/id
-export function getNerveNames(name) {
-  if (name) {
-    for (let i = 0; i < nerveMaps.length ; i++) {
-      if (nerveMaps[i].id == name) {
-        return nerveMaps[i].centrelines;
-      }
-      const found = nerveMaps[i].centrelines.find(element => element === name);
-      if (found)
-        return [nerveMaps[i].id];
-    }
-  }
-  return [];
-}
-
-export function getParentsRegion(name) {
-  if (name) {
-    const lName = name.toLowerCase()
-    if (lName.includes('heart')) {
-      return {id: 'UBERON:0000948', name: 'Heart'};
-    } else if (lName.includes('liver')) {
-      return {id: 'UBERON:0002107', name: 'Liver'};
-    } else if (lName.includes('stomach')) {
-      return {id: 'UBERON:0000945', name: 'Stomach'};
-    } else if (lName.includes('colon')) {
-      return {id: 'UBERON:0001156', name: 'Colon'};
-    } else if (lName.includes('bladder')) {
-      return {id: 'UBERON:0001255', name: 'Bladder'};
-    }
-  }
-  return undefined;
-}
-
-export function getInteractiveAction(result, action) {
-  if (result && result.resource) {
-    let resource = result.resource;
-    if (Array.isArray(resource) && resource[0])
-      resource = resource[0];
-    let term = undefined;
-    let label = undefined;
-    let dataset = undefined;
-    let scaffold = undefined;
-    let simulations = undefined;
-    let taxonomy = resource.taxonomy;
-    if (resource.data && resource.data.id) {
-      term = resource.data.id;
-      label = resource.data.id;
-    } else if (resource.feature) {
-      term = resource.feature.models;
-      label = resource.feature.label;
-      dataset = resource.feature.dataset;
-      scaffold = resource.feature.scaffold;
-      simulations = resource.feature.simulations;
-    }
-    if (term || label) {
-      let data = simulatedData(term, taxonomy, label, dataset, scaffold, simulations);
-      if (data && data.actions) {
-        return data.actions[action];
-      }
-    }
-  }
-  return undefined;
-}
-
-export { simulatedData };
+const nerveMaps = [
+  {
+      "id": "ilxtr:neuron-type-keast-13",
+      "centrelines": [
+          "n_71"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-2",
+      "centrelines": [
+          "bladder_n"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-3",
+      "centrelines": [
+          "bladder_n",
+          "hypogastric_n"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-15",
+      "centrelines": [
+          "n_73"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-1",
+      "centrelines": [
+          "bladder_n"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-7",
+      "centrelines": [
+          "L1_ventral_root_ramus",
+          "L1_spinal_n-1",
+          "lumbar_splanchnic_n",
+          "L2_spinal_n",
+          "L2_ventral_root_ramus"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-9",
+      "centrelines": [
+          "L6_spinal_n-1",
+          "L6_ventral_root",
+          "pudendal_n",
+          "L5_spinal_n",
+          "L5_ventral_root"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-10",
+      "centrelines": [
+          "S1_dorsal_root",
+          "S1_spinal_n-2",
+          "pelvic_splanchnic_n",
+          "L6_spinal_n-2",
+          "L6_dorsal_root",
+          "bladder_n"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-11",
+      "centrelines": [
+          "lumbar_splanchnic_n",
+          "L2_spinal_n",
+          "L1_spinal_n-1",
+          "hypogastric_n",
+          "bladder_n",
+          "L1_dorsal_root",
+          "L2_dorsal_root"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-12",
+      "centrelines": [
+          "L6_spinal_n-1",
+          "L6_dorsal_root",
+          "pudendal_n",
+          "S1_spinal_n-1",
+          "S1_dorsal_root"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-8",
+      "centrelines": [
+          "L1_ventral_root_paravertebral_ganglion",
+          "L1-L2_interganglionic_segment",
+          "sympathetic_trunk_T13-L1",
+          "L2_ventral_root_paravertebral_ganglion",
+          "sympathetic_trunk_L2-L3",
+          "sympathetic_trunk_L4-L5",
+          "sympathetic_trunk_L3-L4",
+          "sympathetic_trunk_L5-L6",
+          "sympathetic_trunk_T12-T13"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-20",
+      "centrelines": [
+          "T1_T2_cns",
+          "C8_T1_cns",
+          "T2_T3_cns",
+          "T10_T11_cns",
+          "T9_T10_cns",
+          "T11_T12_cns",
+          "T8_T9_cns",
+          "C7_C8_cns",
+          "C6_C7_cns",
+          "C4_C5_cns",
+          "C3_C4_cns",
+          "C5_C6_cns",
+          "medulla_C1_cns",
+          "pons_medulla_cns",
+          "C1_C2_cns",
+          "T5_T6_cns",
+          "T4_T5_cns",
+          "T6_T7_cns",
+          "L3_L4_cns",
+          "L2_L3_cns",
+          "L4_L5_cns",
+          "L5_L6_cns",
+          "T13_L1_cns",
+          "T12_T13_cns",
+          "L1_L2_cns",
+          "T3_T4_cns",
+          "n_69",
+          "C2_C3_cns",
+          "T7_T8_cns"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-16",
+      "centrelines": [
+          "n_74"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-4",
+      "centrelines": [
+          "sympathetic_trunk_L6-S1",
+          "L6_gray_ramus-spinal_n",
+          "sympathetic_trunk_L5-L6",
+          "S1_gray_ramus-spinal_n",
+          "S1_spinal_n-2",
+          "pelvic_splanchnic_n",
+          "L6_spinal_n-2",
+          "L1-L2_interganglionic_segment",
+          "sympathetic_trunk_T13-L1",
+          "sympathetic_trunk_L2-L3",
+          "bladder_n",
+          "sympathetic_trunk_L4-L5",
+          "sympathetic_trunk_L3-L4",
+          "sympathetic_trunk_T12-T13"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-17",
+      "centrelines": [
+          "n_75"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-5",
+      "centrelines": [
+          "S1_ventral_root",
+          "S1_spinal_n-2",
+          "pelvic_splanchnic_n",
+          "L6_spinal_n-2",
+          "L6_ventral_root"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-18",
+      "centrelines": [
+          "n_70"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-6",
+      "centrelines": [
+          "L1_ventral_root_ramus",
+          "L1_spinal_n-1",
+          "lumbar_splanchnic_n",
+          "L2_spinal_n",
+          "hypogastric_n",
+          "L2_ventral_root_ramus"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-19",
+      "centrelines": [
+          "n_69"
+      ]
+  },
+  {
+      "id": "ilxtr:neuron-type-keast-14",
+      "centrelines": [
+          "n_72"
+      ]
+  }
+];
+
+
+
+/* eslint-disable no-alert, no-console */
+function getGenericMarkerInfo(term ,label, dataset, scaffold, simulations) {
+  let data = {};
+  data.dataset = dataset;
+  data.scaffold = scaffold;
+  data.simulations = simulations;
+  if (label)
+    data.title = label;
+  else
+    data.title = term;
+  data.description = "";
+  data.actions = [];
+  if (term) {
+    switch (term) {
+    case "ICN":
+        data.title = "RNA";
+        data.description = "The distribution of neurons in the intrinsic cardiac nervous system (ICN) were mapped and visualized in a 3D reconstruction of a male rat heart.";
+        data.actions = {
+          search: {
+            title: "Explore data",
+            resource: "icn",
+            type: "Search",
+            label: "ICN",
+            filter: {
+              facet: 'genotype',
+              term: 'heart'
+            },
+          },
+          plot: {
+            title: "View plot",
+            label: "ICN",
+            resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/ISAN/csv-data/use-case-4/RNA_Seq.csv",
+            type: "Plot",
+            plotType: "heatmap",
+            datasetTitle: "Molecular Phenotype Distribution of Single Rat Intracardiac Neurons",
+            datasetDescription: "Images collected from serial cryostat sectioning of a cryopreserved heart was used to reconstruct the 3D context. Transcriptional profiles taken from isolated single neurons and mapped back into the previously generated 3D context.",
+            datasetUrl: "https://discover.pennsieve.io/datasets/29",
+            datasetImage: "https://assets.discover.pennsieve.io/dataset-assets/29/6/revisions/1/banner.jpg"
+          },
+        };
+        break;
+      default:
+        break;
+    }
+  } else {
+    data.actions = [];
+  }
+  return data;
+}
+
+
+function getHumanData(term, label, dataset, scaffold, simulations) {
+  if (term || label) {
+    let data = {};
+    switch (term) {
+      case "UBERON:0001157":
+        data.title = "Colon";
+        data.description = "";
+        data.actions = {
+          search: {
+            title: "Explore data",
+            label: "Colon",
+            resource: "https://sparc.science/data?type=dataset&q=colon",
+            type: "Search",
+            filter: {
+              facet: 'genotype',
+              term: 'colon'
+            },
+          },
+          scaffold: {
+            title: "View 3D scaffold",
+            label: "Colon",
+            resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Colon/human/humanColon_metadata.json",
+            type: "Scaffold"
+          },
+        };
+        break;
+        case "UBERON:0000948":
+        case "UBERON:0002080": {
+          data.title = "Heart";
+          data.description = "";
+          data.actions = {
+            search: {
+              title: "Explore data",
+              label: "Heart",
+              resource: "https://sparc.science/data?type=dataset&q=colon",
+              type: "Search",
+              filter: {
+                facet: 'genotype',
+                term: 'heart'
+              },
+            },
+            scaffold: {
+              title: "View 3D scaffold",
+              label: "Heart",
+              resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Heart/human/humanHeart_metadata.json",
+              type: "Scaffold"
+            },
+          };
+        }
+        break;
+        case "UBERON:0002048":
+            data.title = "Lung";
+            data.description = "";
+            data.actions = {
+              search: {
+                title: "Explore data",
+                label: "Lung",
+                resource: "https://sparc.science/data?type=dataset&q=lung",
+                type: "Search"
+              },
+              scaffold: {
+                title: "View 3D scaffold",
+                label: "Lung",
+                resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Lungs/human/humanLeftLung_metadata.json",
+                type: "Scaffold"
+              },
+            };
+            break;
+      default:
+        data = getGenericMarkerInfo(term, label, dataset, scaffold, simulations);
+        break;
+    }
+    return data;
+  }
+  return undefined;
+}
+
+function getRatData(term, label, dataset, scaffold, simulations) {
+  if (term || label) {
+    let data = {};
+    switch (term) {
+      case "UBERON:0000948":
+      case "UBERON:0002080":
+        if (!simulations) {
+          data.title = "Heart";
+          data.description = "";
+          data.actions = {
+            search: {
+              title: "Explore data",
+              label: "Heart",
+              resource: "https://sparc.science/data?type=dataset&q=heart",
+              type: "Search",
+              filter: {
+                facet: 'genotype',
+                term: 'heart'
+              },
+            },
+            scaffold: {
+              title: "View 3D scaffold",
+              label: "Heart",
+              resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Heart/rat/ratHeart_metadata.json",
+              type: "Scaffold"
+            },
+            simulation: {
+              title: "Explore simulations",
+              label: "Heart",
+              resource: "https://sparc.science/data?type=simulation&q=heart",
+              type: "URL"
+            },
+          };
+        } else {
+          data = getGenericMarkerInfo(term, label, dataset, scaffold, simulations);
+        }
+        break;
+      case "UBERON:0001156":
+        data.title = "Colon";
+        data.description = "";
+        data.actions = {
+          search: {
+            title: "Explore data",
+            label: "Colon",
+            resource: "https://sparc.science/data?type=dataset&q=colon",
+            type: "Search"
+          },
+        };
+        break;
+        case "UBERON:0002108":
+          data.title = "Small intestines";
+          data.description = "";
+          data.actions = {
+            search: {
+              title: "Explore data",
+              label: "Colon",
+              resource: "https://sparc.science/data?type=dataset&q=small+intestines",
+              type: "Search"
+            },
+          };
+          break;
+        case "UBERON:0001255":
+          data.title = "Urinary bladder";
+          data.description = "";
+          data.actions = {
+            search: {
+              title: "Explore data",
+              label: "Urinary Bladder",
+              resource: "https://sparc.science/data?type=dataset&q=bladder",
+              type: "Search"
+            },
+            scaffold: {
+              title: "View 3D scaffold",
+              label: "Bladder",
+              resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Bladder/rat/ratBladder_metadata.json",
+              type: "Scaffold"
+            },
+          };
+        break;
+        case "UBERON:0002048":
+          data.title = "Lung";
+          data.description = "";
+          data.actions = {
+            search: {
+              title: "Explore data",
+              label: "Lung",
+              resource: "https://sparc.science/data?type=dataset&q=lung",
+              type: "Search"
+            },
+          };
+          break;
+      case "ICN":
+        data.title = "RNA";
+        data.description = "The distribution of neurons in the intrinsic cardiac nervous system (ICN) were mapped and visualized in a 3D reconstruction of a male rat heart.";
+        data.actions = {
+          search: {
+            title: "Explore data",
+            resource: "icn",
+            type: "Search"
+          },
+          plot: {
+            title: "View plot",
+            label: "ICN",
+            resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/ISAN/csv-data/use-case-4/RNA_Seq.csv",
+            type: "Plot",
+            plotType: "heatmap",
+            datasetTitle: "Molecular Phenotype Distribution of Single Rat Intracardiac Neurons",
+            datasetDescription: "Images collected from serial cryostat sectioning of a cryopreserved heart was used to reconstruct the 3D context. Transcriptional profiles taken from isolated single neurons and mapped back into the previously generated 3D context.",
+            datasetUrl: "https://discover.pennsieve.io/datasets/29",
+            datasetImage: "https://assets.discover.pennsieve.io/dataset-assets/29/6/revisions/1/banner.jpg"
+          },
+        };
+        break;
+      case "UBERON:0000945":
+      case "UBERON:0001160":
+      case "UBERON:0001161":
+        data.title = "Stomach";
+        data.description = "";
+        data.actions = {
+          search: {
+            title: "Explore data",
+            label: "Stomach",
+            resource: "https://sparc.science/data?type=dataset&q=stomach",
+            type: "Search"
+          },
+          scaffold: {
+            title: "View 3D scaffold",
+            label: "Stomach",
+            resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Stomach/rat/ratStomach_metadata.json",
+            type: "Scaffold"
+          },
+        };
+        break;
+      case "UBERON:0001759":
+        if (label)
+          data.title = label;
+        else
+          data.title = "Vagus nerve";
+        data.actions = {
+          search: {
+            title: "Explore data",
+            label: "Vagus nerve",
+            resource: "https://sparc.science/data?type=dataset&q=vagus+nerve",
+            type: "Search"
+          },
+          simulation: {
+            title: "Explore simulations",
+            label: "Vagus nerve",
+            resource: "https://sparc.science/data?type=simulation&q=vagus%20nerve",
+            type: "simulation"
+          },
+        };
+        break;
+      default:
+        data = getGenericMarkerInfo(term, label, dataset, scaffold, simulations);
+        break;
+    }
+    return data;
+  }
+  return undefined;
+}
+
+function getMouseData(term, label, dataset, scaffold, simulations) {
+  if (term || label) {
+    let data = {};
+    switch (term) {
+      case "UBERON:0001156":
+        data.title = "Colon";
+        data.description = "";
+        data.actions = {
+          search: {
+            title: "Explore data",
+            label: "Colon",
+            resource: "https://sparc.science/data?type=dataset&q=colon",
+            type: "Search"
+          },
+          scaffold: {
+            title: "View 3D scaffold",
+            label: "Colon",
+            resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Colon/mouse/mouseColon_metadata.json",
+            type: "Scaffold"
+          },
+        };
+        break;
+      case "UBERON:0002048":
+        data.title = "Lung";
+        data.description = "";
+        data.actions = {
+          search: {
+            title: "Explore data",
+            label: "Lung",
+            resource: "https://sparc.science/data?type=dataset&q=lung",
+            type: "Search"
+          },
+          scaffold: {
+            title: "View 3D scaffold",
+            label: "Lung",
+            resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Lungs/mouse/mouseLeftLung_metadata.json",
+            type: "Scaffold"
+          },
+        };
+        break;
+        case "UBERON:0002108":
+          data.title = "Small intestines";
+          data.description = "";
+          data.actions = {
+            search: {
+              title: "Explore data",
+              label: "Colon",
+              resource: "https://sparc.science/data?type=dataset&q=small+intestines",
+              type: "Search"
+            },
+          };
+          break;
+      default:
+        data = getGenericMarkerInfo(term, label, dataset, scaffold, simulations);
+        break;
+    }
+    return data;
+  }
+  return undefined;
+}
+
+function getPigData(term, label, dataset, scaffold, simulations) {
+  if (term || label) {
+    let data = {};
+    switch (term) {
+      case "UBERON:0008972":
+        data.title = "Colon";
+        data.description = "";
+        data.actions = {
+          search: {
+            title: "Explore data",
+            label: "Colon",
+            resource: "https://sparc.science/data?type=dataset&q=colon",
+            type: "Search"
+          },
+          scaffold: {
+            title: "View 3D scaffold",
+            label: "Colon",
+            resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Colon/pig/pigColon_metadata.json",
+            type: "Scaffold"
+          },
+        };
+        break;
+        case "UBERON:0002108":
+          data.title = "Small intestines";
+          data.description = "";
+          data.actions = {
+            search: {
+              title: "Explore data",
+              label: "Colon",
+              resource: "https://sparc.science/data?type=dataset&q=small+intestines",
+              type: "Search"
+            },
+          };
+          break;
+          case "UBERON:0000948":
+            case "UBERON:0002080": {
+              data.title = "Heart";
+              data.description = "";
+              data.actions = {
+                search: {
+                  title: "Explore data",
+                  label: "Heart",
+                  resource: "https://sparc.science/data?type=dataset&q=colon",
+                  type: "Search",
+                  filter: {
+                    facet: 'genotype',
+                    term: 'heart'
+                  },
+                },
+                scaffold: {
+                  title: "View 3D scaffold",
+                  label: "Heart",
+                  resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Heart/pig/pigHeart_metadata.json",
+                  type: "Scaffold"
+                },
+              };
+            }
+            break;
+      default:
+        data = getGenericMarkerInfo(term, label, dataset, scaffold, simulations);
+        break;
+    }
+    return data;
+  }
+  return undefined;
+}
+
+function simulatedData(term, taxonomy, label, dataset, scaffold, simulations) {
+  switch (taxonomy) {
+    case "NCBITaxon:9606":
+        return getHumanData(term, label, dataset, scaffold, simulations);
+    case "NCBITaxon:9823":
+        return getPigData(term, label, dataset, scaffold, simulations);
+    case "NCBITaxon:10090":
+      return getMouseData(term, label, dataset, scaffold, simulations);
+    case "NCBITaxon:10114":
+      return getRatData(term, label, dataset, scaffold, simulations);
+    default:
+      return getGenericMarkerInfo(term, taxonomy, label, dataset, scaffold, simulations);
+  }
+}
+
+function getRatTerms() {
+  return [
+    {id: "UBERON:0000948", name: "Heart", type:"simulation"},
+    {id: "UBERON:0001156", name: "Colon", type:"simulation"},
+    {id: "UBERON:0001255", name: "Bladder", type:"simulation"},
+    {id: "UBERON:0000945", name: "Stomach", type:"simulation"},
+    {id: "UBERON:0001759", name: "Vagus nerve", type:"simulation"},
+    {id: "UBERON:0002108", name: "Small intestines", type:"simulation"},
+    {id: "UBERON:0002107", name: "Liver", type:"simulation"},
+  ];
+}
+
+export function getAvailableTermsForSpecies() {
+  return getRatTerms();
+}
+
+// Find the id/centre lines for the matchin centre lines/id
+export function getNerveNames(name) {
+  if (name) {
+    for (let i = 0; i < nerveMaps.length ; i++) {
+      if (nerveMaps[i].id == name) {
+        return nerveMaps[i].centrelines;
+      }
+      const found = nerveMaps[i].centrelines.find(element => element === name);
+      if (found)
+        return [nerveMaps[i].id];
+    }
+  }
+  return [];
+}
+
+export function getParentsRegion(name) {
+  if (name) {
+    const lName = name.toLowerCase()
+    if (lName.includes('heart')) {
+      return {id: 'UBERON:0000948', name: 'Heart'};
+    } else if (lName.includes('liver')) {
+      return {id: 'UBERON:0002107', name: 'Liver'};
+    } else if (lName.includes('stomach')) {
+      return {id: 'UBERON:0000945', name: 'Stomach'};
+    } else if (lName.includes('colon')) {
+      return {id: 'UBERON:0001156', name: 'Colon'};
+    } else if (lName.includes('bladder')) {
+      return {id: 'UBERON:0001255', name: 'Bladder'};
+    }
+  }
+  return undefined;
+}
+
+export function getInteractiveAction(result, action) {
+  if (result && result.resource) {
+    let resource = result.resource;
+    if (Array.isArray(resource) && resource[0])
+      resource = resource[0];
+    let term = undefined;
+    let label = undefined;
+    let dataset = undefined;
+    let scaffold = undefined;
+    let simulations = undefined;
+    let taxonomy = resource.taxonomy;
+    if (resource.data && resource.data.id) {
+      term = resource.data.id;
+      label = resource.data.id;
+    } else if (resource.feature) {
+      term = resource.feature.models;
+      label = resource.feature.label;
+      dataset = resource.feature.dataset;
+      scaffold = resource.feature.scaffold;
+      simulations = resource.feature.simulations;
+    }
+    if (term || label) {
+      let data = simulatedData(term, taxonomy, label, dataset, scaffold, simulations);
+      if (data && data.actions) {
+        return data.actions[action];
+      }
+    }
+  }
+  return undefined;
+}
+
+export { simulatedData };