xml_jats_resolver 0.3.1 → 0.3.2

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data/CHANGELOG.md

@@ -1,3 +1,7 @@
+## 0.3.2
+
+* Add DTDs for BITS and JATS v1.2d
+
 ## 0.3.1
 
 * Be less restrictive on Nokogiri version

data/lib/dtd/jats/archiving/1.2d1/oasis_mathml3_dtd/JATS-XHTMLtablesetup1.ent

@@ -0,0 +1,516 @@
+<!-- ============================================================= -->
+<!--  MODULE:    XHTML Table Setup Module                          -->
+<!--  VERSION:   ANSI/NISO JATS Version 1.2d1 (Z39.96-2015)        -->
+<!--  DATE:      June 2017                                         -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//NLM//DTD JATS (Z39.96) JATS DTD Suite XHTML Table Setup Module v1.1 201501215//EN"
+     Delivered as file "JATS-XHTMLtablesetup1.ent"                 -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     JATS DTD Suite                                    -->
+<!--                                                               -->
+<!-- PURPOSE:    Provides the organization for using the XHTML 1.1 -->
+<!--             table model                                       -->
+<!--                                                               -->
+<!-- CONTAINS:   1) Invokes the inline style attribute module      -->
+<!--                  to pick up the "style" attribute             -->
+<!--             2) Overrides to standard parameter entities used  -->
+<!--                in the XHTML 1.1 table model                   -->
+<!--             3) Invokes the XHTML 1.1 table model              -->
+<!--                                                               -->
+<!-- MODULES REQUIRED:                                             -->
+<!--             1) XHTML inline style module                      -->
+<!--                  (-%xhtml-inlstyle-1.mod;)                    -->
+<!--             2) XHTML 1.1 table model (-%xhtml-table-1.mod;)   -->
+<!--                                                               -->
+<!-- TAG SET SPONSOR                                               -->
+<!--             National Center for Biotechnology                 -->
+<!--                Information (NCBI)                             -->
+<!--             National Library of Medicine (NLM)                -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             This module was created for the JATS DTD Suite.   -->
+<!--             Digital archives and publishers may use the       -->
+<!--             DTD as is for markup of journal literature or     -->
+<!--             related material for archiving and transferring   -->
+<!--             such material between archives or create a        -->
+<!--             custom XML DTD from the Suite for                 -->
+<!--             these purposes.                                   -->
+<!--                                                               -->
+<!--             This DTD is in the public domain. An organization -->
+<!--             that wishes to create its own DTD from the suite  -->
+<!--             may do so without permission from NLM.            -->
+<!--                                                               -->
+<!--             The suite has been set up to be extended using a  -->
+<!--             new DTD file and a new DTD-specific customization -->
+<!--             module to redefine the many Parameter Entities.   -->
+<!--             Do not modify the suite directly or redistribute  -->
+<!--             modified versions of the suite.                   -->
+<!--                                                               -->
+<!--             In the interest of maintaining consistency and    -->
+<!--             clarity for potential users, NLM requests:        -->
+<!--                                                               -->
+<!--             1. If you create a DTD from the JATS DTD Suite    -->
+<!--                and intend to stay compatible with the suite,  -->
+<!--                then please include the following statement    -->
+<!--                as a comment in all of your DTD modules:       -->
+<!--                   "Created from, and fully compatible with,   -->
+<!--                    the ANSI/NISO Z39.96 Journal Article Tag   -->
+<!--                    Suite (JATS)."                             -->
+<!--                                                               -->
+<!--             2. If you alter one or more modules of the suite, -->
+<!--                then please rename your version and all its    -->
+<!--                modules to avoid any confusion with the        -->
+<!--                original suite. Also, please include the       -->
+<!--                following statement as a comment in all your   -->
+<!--                DTD modules:                                   -->
+<!--                   "Based in part on, but not fully compatible -->
+<!--                    with, the ANSI/NISO Z39.96 Journal Article -->
+<!--                    Tag Suite (JATS)."                         -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             December 2002                                     -->
+<!--                                                               -->
+<!-- CREATED BY: Mulberry Technologies, Inc. for the NISO Z39.96   -->
+<!--             Working Group. Mulberry Technologies was          -->
+<!--             supported by National Center for Biotechnology    -->
+<!--             Information (NCBI), a center of the US National   -->
+<!--             Library of Medicine (NLM).                        -->
+<!--                                                               -->
+<!--             This module is part of the JATS DTD Suite. The    -->
+<!--             Suite is a continuation of work done by NCBI,     -->
+<!--             Mulberry Technologies, and Inera Inc. on the NLM  -->
+<!--             Journal Archiving and Interchange DTD Suite, which-->
+<!--             was originally released in December, 2002.        -->
+<!--                                                               -->
+<!--             NLM thanks the Harvard University Libraries, both -->
+<!--             for proposing that a draft archiving NLM DTD for  -->
+<!--             life sciences journals be extended to accommodate -->
+<!--             journals in all disciplines and for sponsoring    -->
+<!--             Inera Inc.'s collaboration with other DTD         -->
+<!--             authors in completing NLM Version 1.0. The        -->
+<!--             Andrew W. Mellon Foundation provided support for  -->
+<!--             these important contributions.                    -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             this DTD should be sent in email to:              -->
+<!--                 jats@ncbi.nlm.nih.gov                         -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION/CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+     =============================================================
+     JATS Version 1.2d1              (DAL/BTU) v1.2d1  (2017-06-31)
+
+     NISO JATS is a continuing maintenance NISO Standard, which
+     requires voting by the ANSI and NISO memberships to be changed. 
+      
+     This draft DTD represents an interim version of the
+     non-normative JATS DTD Suite, as an indication to JATS users
+     the decisions that have been made by the JATS Standing
+     Committee. This draft has not yet been given public review 
+     or voting. The formal public identifiers were changed in the 
+     modules and the catalogs.
+    
+ 17. JATS became version "1.2d1" and "v1.1d2 20170631"
+ 
+    =============================================================
+     JATS Version 1.1                (DAL/BTU) v1.1  (2015-12-15)
+
+     JATS is a continuing maintenance NISO Standard, which
+     requires voting by the ANSI and NISO memberships to be changed. 
+     JATS 1.1 was approved in late 2015, so the formal public 
+     identifiers were changed in the modules and the catalogs.
+     No model or attribute changes were made at this time. 
+ 
+ 16. JATS became version "1.1" and "v1.1 20151215"
+
+     =============================================================
+     JATS Version 1.1                (DAL/BTU) v1.1  (2015-12-15)
+
+     JATS is a continuing maintenance NISO Standard, which
+     requires voting by the ANSI and NISO memberships to be changed. 
+     JATS 1.1 was approved in late 2015, so the formal public 
+     identifiers were changed in the modules and the catalogs.
+     No model or attribute changes were made at this time. 
+ 
+ 15. JATS became version "1.1" and "v1.1 20151215"
+
+     =============================================================
+     JATS Version 1.1d3             (DAL/BTU) v1.1d3  (2015-03-01)
+   
+     The changes in this release are in response to NISO 
+     License and Indicators Recommended Practice.
+
+     NISO JATS is a continuing maintenance NISO Standard, which 
+     requires voting by the NISO membership to be changed. This
+     Committee Draft 1.1d3 will be sent to the NISO voting
+     membership, to become (if approved) NISO JATS 1.1.
+     
+     This draft DTD represents an interim version of the
+     non-normative JATS DTD Suite, as an indication to JATS users
+     the decisions that have been made by the JATS Standing
+     Committee.
+
+ 14. JATS became version "1.1d3" and "v1.1d3 20150301"
+
+     =============================================================
+     JATS Version 1.1d2              (DAL/BTU) v1.1d2 (2014-09-30)
+   
+     NISO JATS is a continuing maintenance NISO Standard, which 
+     requires voting by the NISO membership to be changed. This
+     Committee Draft 1.1d2 will be sent to the NISO voting
+     membership, to become (if approved) NISO JATS 1.1.
+     
+     This catalog represents an interim version of the
+     non-normative JATS DTD Suite, as an indication to JATS users
+     the decisions that have been made by the JATS Standing
+     Committee.
+
+ 13. TABLE ATTRIBUTES
+     - Added @specific-use to the attributes for <table>,
+       primarily for use when <table> is used inside <alternatives>.
+     - This entailed creating a new PE "additional-table-atts",
+       which is defined and called AFTER the full table setup,
+       so that XML tools that do not recognize a 2nd ATTLIST for
+       an element will lose only the @specific-use. This new PE
+       could also be sued to add other attributes to an XHTML-
+       inspired <table>.
+
+ 12. JATS became version "1.1d2" and "v1.1d2 20140930//EN"
+   
+     =============================================================
+     NISO JATS Version 1.1d1           (DAL/BTU) v1.1 (2013-11-15)
+   
+     ANSI/NISO Z39.96-2012 (pre-release for V1.0 BITS; Version 1.1d1) 
+
+     NISO JATS Standing Committee met and answered the requests and
+     suggestions from the NISO request forms.
+
+     Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs,  
+     XSDs, RNGs and supporting documentation are available at
+           http://jats.nlm.nih.gov/1.0/
+
+ 11. CAPTION ATTRIBUTES - This module has been changed to alter
+      the mechanism by which the @style attribute is associated 
+      with the element <caption>. 
+          Previously, the <caption> element's base attributes  
+      were declared in the JATS-display.ent module and additional 
+      attributes (in the published XHTML, only @style) for it 
+      were declared in the XHTML Table Module. The @style 
+      attribute is now declared with all the other <caption>
+      attributes in the  JATS-display.ent module, and the caption 
+      attributes in the XHTML table model have been set to IGNORE. 
+      This was done to prevent duplicate (harmless but annoying)
+      attribute warning messages. 
+                        
+           CAUTION: If your XHTML customization has added attributes
+                    by redefining the parameter entity 
+                            "Core.extra.attrib"
+                    you will need to uncomment the lines in this
+                    module that add that parameter entity to the
+                    contents of the <caption> attribute list.
+                    Otherwise, your new attributes will not be
+                    added to <caption>. When you uncomment this
+                    line, you will get a duplicative attribute
+                    warning message on the @style attribute,
+                    which you may ignore.  
+                    
+ 10. GLOBAL ATTRIBUTES - Added the new parameter entity 
+         %jats-common-atts;
+     to every element in this module. This PE adds (for now) the
+     @id attribute and the @xml:base attribute to every element,
+     whether metadata or narrative.
+     Since the @id in this parameter entity is optional, a second
+     parameter entity jats-common-atts-id-required was also added.
+     The two are kept in sync with the jats-base-atts parameter 
+     entity.
+     This added an attribute list to the parameter entity 
+     "Common.attrib".
+   
+     =============================================================
+     NISO JATS Version 1.0             (DAL/BTU) v1.0 (2012-xx-xx)
+   
+     ANSI/NISO Z39.96-2012 (Version 1.0) 
+
+     Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs,  
+     XSDs, RNGs and supporting documentation are available at
+           http://jats.nlm.nih.gov/1.0/
+
+  5. OASIS NAMESPACE - Added the OASIS table namespace handling,
+     which, by default, places a namespace prefix of "oasis" on
+     the OASIS CALS Exchange Table Model.
+      - Added call to JATS-oasis-namespace.ent (which sets up
+          the OASIS namespace URI and the prefix "oasis")
+      - Added  %oasis.xmlns.attrib; attribute to <article>
+      - Altered the custom classes module to use the new
+         namespaced OASIS element names for <table> and <tbody>
+         (%otable.qname; and %otbody.qname;)
+     NOTE: The XHTML table material was not removed, so both table
+     models still work (using <table> and <oasis:table> respectively.
+   
+  4. Updated the DTD-version attribute to "1.0" and the formal
+     public identifier to the date: "v1.0 20120330//EN".
+
+     =============================================================
+     Version 0.4                       (DAL/BTU) v0.4 (2011-01-31)
+   
+     This Tag Set is in the process of becoming a NISO standard.
+     The version numbers are starting over from 0.4", as a Trial
+     Use Draft, to be made into "Version 1.0" when the Tag Suite 
+     becomes a NISO standard. Thus, the version number that would
+     have been "NLM Version 3.1 Draft" has become NISO JATS
+     "Version 0.4".
+
+     Details on NISO Trial Use Draft Version 0.4 are available at
+           http://jats.nlm.nih.gov/JATS-0.4.
+   
+  3. Updated the DTD-version attribute to "0.4" 
+   
+  2. Updated the public identifier to "v0.4 20110131", 
+     modified the formal public identifier to include "JATS (Z39.96)",
+     and the filename as delivered to include "JATS" and the
+     new version number "0".
+
+     =============================================================
+     Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)
+
+     Version 3.0 is the first non-backward-compatible release.
+     In addition to the usual incremental changes, some
+     elements and attributes have been renamed and/or remodeled
+     to better meet user needs and to increase tag set consistency.
+     All module change histories are available through the Tag Suite
+     web site at http://dtd.nlm.nih.gov.
+
+     Details on version 3.0 are available at
+           http://dtd.nlm.nih.gov/3.0.
+
+  1. Updated public identifier to "v3.0 20080202//EN"              -->
+
+<!-- ============================================================= -->
+
+<!-- Details concerning 
+     ANSI/NISO Z39.96-2015 JATS-based DTDs, XSDs, 
+     RNGs and supporting documentation are available at
+           http://jats.nlm.nih.gov/1.1/                            --> 
+
+<!-- ============================================================= -->
+<!--                    SET UP FOR THE XHTML 1.1 TABLE MODULE      -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    THE XHTML TABLE STYLE ATTRIBUTE MODULE     -->
+<!-- ============================================================= -->
+
+
+<!--                    XHTML TABLE INLINE STYLE MODULE            -->
+<!--                    This module declares the 'style' attribute,
+                        used to support inline style markup for the
+                        <td> and <tr> elements. Copyright 1998-2005
+                        W3C (MIT, ERCIM, Keio), All Rights Reserved.
+                        Revision: $Id: xhtml-inlstyle-1.mod,v 4.0
+                        2001/04/02 22:42:49 altheim Exp $
+                        PUBLIC identifier
+                        "-//W3C//ENTITIES XHTML Inline Style 1.0//EN"
+                        SYSTEM identifier
+                "http://www.w3.org/MarkUp/DTD/xhtml-inlstyle-1.mod"-->
+%xhtml-inlstyle-1.mod;
+
+
+<!-- ============================================================= -->
+<!--                    DEFAULTS FOR TABLE ELEMENT NAMES           -->
+<!-- ============================================================= -->
+
+
+<!ENTITY % table.qname  "table"                                      >
+<!ENTITY % caption.qname
+                        "caption"                                    >
+<!ENTITY % thead.qname  "thead"                                      >
+<!ENTITY % tfoot.qname  "tfoot"                                      >
+<!ENTITY % tbody.qname  "tbody"                                      >
+<!ENTITY % colgroup.qname
+                        "colgroup"                                   >
+<!ENTITY % col.qname    "col"                                        >
+<!ENTITY % tr.qname     "tr"                                         >
+<!ENTITY % th.qname     "th"                                         >
+<!ENTITY % td.qname     "td"                                         >
+
+
+<!-- ============================================================= -->
+<!--                    DEFAULTS FOR DATATYPE PARAMETER ENTITIES   -->
+<!-- ============================================================= -->
+
+
+<!ENTITY % Text.datatype
+                        "CDATA"                                      >
+
+
+<!ENTITY % Number.datatype
+                        "CDATA"                                      >
+
+
+<!ENTITY % MultiLength.datatype
+                        "CDATA"                                      >
+
+
+<!ENTITY % Length.datatype
+                        "CDATA"                                      >
+
+
+<!ENTITY % Pixels.datatype
+                        "CDATA"                                      >
+
+
+<!ENTITY % Character.datatype
+                        "CDATA"                                      >
+
+
+<!-- ============================================================= -->
+<!--                    DEFAULTS FOR ATTRIBUTE PARAMETER ENTITIES  -->
+<!-- ============================================================= -->
+
+
+<!--                    COMMON ATTRIBUTES (used all over)          -->
+<!--         style      Defined in the PE -%Core.extra.attrib; and
+                        used to support inline style markup. This
+                        attribute is defined in the XHTML Table
+                        Inline Style Module called in with the PE:
+                           -%xhtml-inlstyle-1.mod
+                        which must be invoked before the attribute
+                        PE is used. 
+                        Warning: The definitions below will lead to
+                        the element <caption> having the attributes
+                        @id and @content-type defined twice. This is
+                        just a validity warning, not an error and 
+                        should be ignored.                         -->
+<!ENTITY % Common.attrib
+            "%jats-common-atts;
+             content-type
+                        CDATA                             #IMPLIED
+             %Core.extra.attrib;"                                    >
+
+
+<!-- ============================================================= -->
+<!--                    OVER-RIDES TO REMOVE CAPTION               -->
+<!-- ============================================================= -->
+
+
+<!--                   CAPTION FOR A TABLE                         -->
+<!--                   Modification of the standard XHMTL model
+                       Removed the definition of caption, so the
+                       element would not be multiply defined       -->
+<!ENTITY % caption.element
+                       "IGNORE"                                      >
+
+
+<!ENTITY % caption.attlist  
+                       "IGNORE"                                      >
+
+
+<!--                    CAPTION ATTRIBUTES                         -->
+<!--                    Attributes for <caption> element           -->
+<!--                    In the lines directly above this declaration,
+                        the attribute list for caption, as defined
+                        in the XHTML Table Model, has been removed
+                        using the IGNORE mechanism. This was done 
+                        to prevent duplicate (harmless but annoying)
+                        attribute warning messages. 
+                        
+                        CAUTION: If your XHTML customization has
+                        redefined the parameter entity 
+                                   "Core.extra.attrib"
+                        you will need to uncomment the lines
+                        below. You will get a duplicative attribute
+                        warning message on the @style attribute,
+                        which you may ignore.                      -->
+<!--
+<!ENTITY % caption-atts
+                        "%Core.extra.attrib;                         >
+-->
+            
+            
+<!-- ============================================================= -->
+<!--                    OVER-RIDES FOR CONTENT PARAMETER ENTITIES  -->
+<!-- ============================================================= -->
+
+
+<!--                   INLINE ELEMENTS                             -->
+<!--                   Modification of the standard XHMTL model
+                       for inline elements used in the <caption>
+                       Set to the null because the <caption>
+                       element is now inside the table wrapper,
+                       not inside the table, as the original XHTML
+                       table intended                              -->
+<!ENTITY % Inline.mix  ""                                            >
+
+
+<!--                   CONTENTS OF A TABLE CELL                    -->
+<!--                   Modification of the standard XHMTL model
+                       used for the content of tables cells <th>
+                       and <td>                                    -->
+<!ENTITY % Flow.mix    "%inside-cell;"                               >
+
+
+<!--                   CONTENTS OF A TABLE                         -->
+<!--                   Modification of the standard XHMTL model
+                       This has been modified from the XHTML model
+                       to remove the <caption> element from the
+                       <table> model, since in the JATS DTD Suite 
+                       modular library, the <caption> element is part  
+                       of the Table Wrapper <table-wrap> element. 
+                       No other changes were made to the XHTML table 
+                       content model.                              -->
+<!ENTITY % table.content
+     "( ( %col.qname;* | %colgroup.qname;* ),
+        ( ( %thead.qname;?, %tfoot.qname;?, %tbody.qname;+ ) |
+          ( %tr.qname;+ )
+        )
+      )"                                                             >
+
+
+<!-- ============================================================= -->
+<!--                    THE XHTML V1.1 TABLE INVOCATION            -->
+<!-- ============================================================= -->
+
+
+<!--                    XHTML TABLE MODEL                          -->
+<!--                    This module declares element types and
+                        attributes used to provide table markup
+                        similar to HTML 4, including features that
+                        enable better accessibility for non-visual
+                        user agents. This is the XHTML reformulation
+                        of HTML as a modular XML application.
+                        Copyright 1998-2005 W3C (MIT, ERCIM, Keio),
+                        All Rights Reserved.
+                        Revision: $Id: xhtml-table-1.mod,v 4.1
+                        2001/04/10 09:42:30 altheim Exp $ SMI
+                        PUBLIC identifier
+                        "-//W3C//ELEMENTS XHTML Tables 1.0//EN"
+                        SYSTEM identifier:
+                  "http://www.w3.org/MarkUp/DTD/xhtml-table-1.mod" -->
+%xhtml-table-1.mod;
+
+<!-- ============================================================= -->
+<!--                    ADDITIONAL ATTRIBUTE(S) FOR TABLE          -->
+<!-- ============================================================= -->
+
+<!ENTITY % additional-table-atts
+            "specific-use 
+                        CDATA                              #IMPLIED" >
+
+<!ATTLIST %table.qname;
+            %additional-table-atts;                                  >
+
+<!-- ================== End XHTML Table Setup Module ============= -->