xml_jats_resolver 0.3.1 → 0.3.2

data/lib/dtd/jats/archiving/2.0/bits_oasis_xhtml_tables_dtd/BITS-book-oasis-custom-classes2.ent

@@ -0,0 +1,622 @@
+<!-- ============================================================= -->
+<!--  MODULE:    Book Interchange DTD with OASIS and XHTML Tables  -->
+<!--             Customize Classes Module                          -->
+<!--  VERSION:   BITS 2.0                                          -->
+<!--  DATE:      June 2015                                         -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//NLM//DTD BITS Book Interchange DTD with OASIS and XHTML Tables Customize Classes Module v2.0 20151225//EN"
+Delivered as file "BITS-book-oasis-custom-classes2.ent"            -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     Book Interchange Tag Suite                        -->
+<!--                                                               -->
+<!-- PURPOSE:    To declare the Parameter Entities (PEs) used to   -->
+<!--             over-ride the JATS DTD Suite default named        -->
+<!--             element classes.                                  -->
+<!--                                                               -->
+<!--             Note: Since PEs must be declared before they      -->
+<!--             are used, this module must be called before the   -->
+<!--             NISO JATS default classes module as well as before-->
+<!--             the content modules that declare elements.        -->
+<!--                                                               -->
+<!-- TAG SET SPONSOR                                               -->
+<!--             National Center for Biotechnology                 -->
+<!--                Information (NCBI)                             -->
+<!--             National Library of Medicine (NLM)                -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             This DTD was created as a superset customization  -->
+<!--             of the ANSI/NISO JATS Z39.96-2012 Version 1.0     -->
+<!--             Journal Article Tag Set.                          -->
+<!--                                                               -->
+<!--             Digital archives and publishers may use the       -->
+<!--             DTD as is for markup of books or book-like        -->
+<!--             material for archiving and transferring           -->
+<!--             such material between archives or they may create -->
+<!--             a custom XML DTD from the BITS Suite for          -->
+<!--             these purposes.                                   -->
+<!--                                                               -->
+<!--             This DTD is in the public domain. An organization -->
+<!--             that wishes to create its own DTD from the suite  -->
+<!--             may do so without permission from NLM.            -->
+<!--                                                               -->
+<!--             The suite has been set up to be extended using a  -->
+<!--             new DTD file and new DTD-specific customization   -->
+<!--             modules to redefine the many Parameter Entities.  -->
+<!--             Do not modify the suite directly or redistribute  -->
+<!--             modified versions of the suite.                   -->
+<!--                                                               -->
+<!--             In the interest of maintaining consistency and    -->
+<!--             clarity for potential users, NLM requests:        -->
+<!--                                                               -->
+<!--             1. If you create a DTD from the BITS DTD Suite    -->
+<!--                and intend to stay compatible with the suite,  -->
+<!--                then please include the following statement    -->
+<!--                as a comment in all of your DTD modules:       -->
+<!--                   "Created from, and fully compatible with,   -->
+<!--                    the Book Interchange Tag Suite (BITS).     -->
+<!--                                                               -->
+<!--             2. If you alter one or more modules of the suite, -->
+<!--                then please rename your version and all its    -->
+<!--                modules to avoid any confusion with the        -->
+<!--                original suite. Also, please include the       -->
+<!--                following statement as a comment in all your   -->
+<!--                DTD modules:                                   -->
+<!--                   "Based in part on, but not fully compatible -->
+<!--                    with, the Book Interchange Tag Suite       -->
+<!--                    (BITS)."                                   -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             April 2012                                        -->
+<!--                                                               -->
+<!-- CREATED BY: Mulberry Technologies, Inc. for the National      -->
+<!--             National Center for Biotechnology Information     -->
+<!--             (NCBI), a center of the US National Library of    -->
+<!--             Medicine (NLM).                                   -->
+<!--                                                               -->
+<!--             The BITS Book Interchange DTD is built from the   -->
+<!--             Journal Archiving and Interchange DTD of the      -->
+<!--             ANSI/NISO Journal Article Tag Suite (JATS)        -->
+<!--             Version 1.0 (Z39.96-2015).                        -->
+<!--             ANSI/NISO JATS DTD modules.                       -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             this DTD should be sent in email to:              -->
+<!--                 bits@ncbi.nlm.nih.gov                         -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION/CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+    =============================================================
+     BITS Version 2.0                (DAL/BTU) v2.0  (2015-12-25)
+     JATS Version 1.1                (DAL/BTU) v1.1  (2015-12-15)
+
+     JATS is a continuing maintenance NISO Standard, which
+     requires voting by the ANSI and NISO memberships to be changed. 
+     JATS 1.1 was approved in late 2015, and BITS modified to use
+     the most recent version. No other changes to BITS were made.
+ 
+ 10. BITS remained version "2.0" but became "v2.0 20151225"
+     JATS became version "1.1" and "v1.1 20151215"
+
+    =============================================================
+     BITS Version 2.0                (DAL/BTU) v2.0  (2015-03-15)
+     JATS Version 1.1                (DAL/BTU) v1.1  (2015-03-01)
+
+     BITS was modified, based on user feedback collected in 2014 
+     and January/February 2015, according to the decisions
+     made by the BITS Working Group. This DTD represents current 
+     BITS and an interim version of the non-normative JATS DTD 
+     Suite (version 1.1), as an indication to JATS users of 
+     the decisions that have been made by the JATS Standing
+     Committee. 
+
+     NISO JATS is a continuing maintenance NISO Standard, which
+     requires voting by the NISO membership to be changed. This
+     Committee Draft 1.1 will be sent to the NISO voting
+     membership, to become (if approved) NISO JATS 1.1.
+
+ 9. QUESTIONS AND ANSWERS
+    - A new class to hold just the <option> element
+    - Added <question-wrap-group> and <explanation>
+       to the block display elements
+    - Enhanced question-answer.class to also hold <explanation>
+       and <question-wrap-group>
+
+ 8. BLOCK DISPLAY ELEMENTS - Three new elements added to the block
+    display elements:
+     - explanation
+     - <name-address-wrap> (new element)
+     - <question-wrap-group> (new element)
+
+ 7. ATTRIB - Created a new class to add the following elements
+    to <attrib>:
+      - collab
+      - element-citation
+      - mixed-citation
+      - name
+      - string-name
+
+  6. SERIF HIGHLIGHTING - Added a new emphasis element <serif>,
+     which means retain the serif nature of this content no
+     matter what the surrounding text does. Typically used for
+     variables in math, chemistry, and physics.
+
+  5. REFERENCES LIST - Made a new class holding just the <ref-list>
+     element, so that it can be added to the large OR group inside 
+     <front-matter>, for example.
+
+  4. FOOTNOTE GROUP CLASS - Made a new class to hold just
+     the <fn-group> element, so it can be used in the model
+     of Table of Contents, for example.
+
+  3. BOOK APPENDIX AND BOOK APPENDIX GROUP
+     - Created a new book-back-only class, modeled on 
+       back-only class to hold the new element
+       Book Appendix (<book-app>), a book-part-level appendix
+       structure, as well as the other things that may be in 
+       a <book-back>.
+     - Revised book-back-only class to contain both the 
+       <book-app> (Book Appendix) element and the <book-app-group>
+       (grouping element for book-level appendices).
+
+  2. BITS became version "2.0" and   "v2.0 20150630"
+     JATS became version "1.1" and "v1.1 20150301"
+
+     =============================================================
+     BITS Version 1.1                (DAL/BTU) v1.1    (2014-09-30)
+     JATS Version 1.1d2              (DAL/BTU) v1.1d2  (2014-09-30)
+
+     NISO JATS is a continuing maintenance NISO Standard, which
+     requires voting by the NISO membership to be changed. This
+     Committee Draft 1.1d2 will be sent to the NISO voting
+     membership, to become (if approved) NISO JATS 1.1.
+
+     This catalog represents an interim version of the
+     non-normative JATS DTD Suite, as an indication to JATS users
+     the decisions that have been made by the JATS Standing
+     Committee.
+
+  1. BITS became version "1.1" and   "v1.1 20140930//EN"
+     JATS became version "1.1d2" and "v1.1d2 20140930//EN"
+
+     =============================================================
+                                                                   -->
+
+<!-- ============================================================= -->
+<!--                    INLINE CLASSES                             -->
+<!-- ============================================================= -->
+
+
+<!--                    PHRASE CLASS ELEMENTS                      -->
+<!--                    Small inline elements, that surround a word
+                        or phrase in the text because the subject
+                        (content) should be identified as something
+                        special or different                       -->
+<!ENTITY % phrase.class "abbrev | index-term | index-term-range-end |
+                         milestone-end | milestone-start |
+                         named-content | styled-content"             >
+
+
+<!-- ============================================================= -->
+<!--                    PRESENTATION/FORMAT CLASSES                -->
+<!-- ============================================================= -->
+
+<!--                    EMPHASIS/RENDITION ELEMENTS                -->
+<!--                    Elements concerning with marking the location
+                        of typographical emphasis (highlighting)
+                        DTD Design Note: There are no emphasis
+                        elements for <fractur>, <openface> (black
+                        board), <script>, etc. because this DTD
+                        recommends the use of the STIX extensions
+                        to accomplish this, as soon as they are
+                        available.                                 -->
+<!ENTITY % emphasis.class
+                        "bold | fixed-case | italic | monospace |
+                         overline | overline-start | overline-end |
+                         roman | sans-serif | sc | serif | strike |
+                         underline | underline-start | 
+                         underline-end |
+                         ruby"                                       >
+
+
+<!--                    FACE MARKUP ELEMENTS                       -->
+<!--                    All of the emphasis/rendition elements
+                        except <ruby>, for use (initially) inside
+                        <ruby> itself.                             -->
+<!ENTITY % face-markup.class
+                        "bold | fixed-case | italic | monospace |
+                         overline | overline-start | overline-end |
+                         roman | sans-serif | sc | serif | strike |
+                         underline | underline-start | 
+                         underline-end"                              >
+
+
+<!--                    X-GENERATED PUNCTUATION CLASS              -->
+<!--                    Class containing a single element that will
+                        hold generated punctuation or other
+                        generatable text, for example, the commas or
+                        semicolons between keywords.               -->
+<!ENTITY % x.class      "x"                                          >
+
+
+<!-- ============================================================= -->
+<!--                    CITATION CLASSES (references.ent)          -->
+<!-- ============================================================= -->
+
+
+<!--                    CITATION CLASS ELEMENTS                    -->
+<!--                    Reference to an external document, as used
+                        within, for example, the text of a
+                        paragraph
+                        (from Publishing; removed <nlm-citation>)  -->
+<!ENTITY % citation.class
+                        "citation-alternatives | element-citation |
+                         mixed-citation"                             >
+
+
+<!--                    CITATION MINUS ALTERNATIVES CLASS ELEMENTS -->
+<!--                    All the citation elements except the
+                        <citation-alternatives> element.
+                        (from Publishing; removed <nlm-citation>)  -->
+<!ENTITY % citation-minus-alt.class
+                        "element-citation | mixed-citation"          >
+
+
+<!--                    CITATION ADDITIONS CLASS ELEMENTS          -->
+<!--                    Elements that are not part of the broader
+                        -references.class, but that need to be part
+                        of the model for citations.                -->
+<!ENTITY % citation-additions.class
+                        "string-date"                                >
+
+<!-- ============================================================= -->
+<!--                    BOOK METADATA CLASSES                      -->
+<!-- ============================================================= -->
+ 
+
+<!--                    ATTRIBUTION CLASS ELEMENTS                 -->
+<!--                    Identify the parts of an attribution
+                        (element <attrib>).                        -->
+<!ENTITY % attrib.class "collab |  element-citation |  
+                         mixed-citation |  name | string-name"       >
+
+
+<!--                    CONTRIBUTOR INFORMATION                    -->
+<!--                    Metadata about a contributor
+                        (from Publishing)                          -->
+<!ENTITY % contrib-info.class
+                        "address | aff | aff-alternatives |
+                         author-comment | bio | email |  etal |
+                         ext-link | fn | on-behalf-of | role |
+                         uri | xref"                                 >
+
+
+<!--                    EVENT CLASS ELEMENTS                       -->
+<!--                    Dates and other matters of history         -->
+<!ENTITY % event.class  "event"                                      >
+
+
+<!-- ============================================================= -->
+<!--                    BLOCK DISPLAY CLASSES                      -->
+<!-- ============================================================= -->
+
+
+<!--                    ADDRESS-ONLY CLASS                         -->
+<!--                    Holds the <address> element, for use in 
+                        content models.                            -->
+<!ENTITY % address-only.class
+                        "address"                                    >
+
+
+<!--                    DISPLAY CLASS ELEMENTS                     -->
+<!--                    Graphical or other image-related elements.
+                        The display elements may occur within
+                        the text of a table cell or paragraph
+                        although they are typically at the same
+                        hierarchical level as a paragraph.         -->
+<!ENTITY % block-display.class
+                        "address | alternatives |
+                         answer | answer-set | array |
+                         boxed-text | chem-struct-wrap | code |
+                         explanation | 
+                         fig | fig-group | graphic | media |
+                         name-address-wrap | preformat | 
+                         question | question-wrap | 
+                         question-wrap-group |
+                         supplementary-material |
+                         table-wrap | table-wrap-group"              >
+
+
+<!--                    DISPLAY CLASS ELEMENTS (NO ALTERNATIVES)   -->
+<!--                    Graphical or other image-related elements.
+                        The display elements may occur within
+                        the text of a table cell or paragraph
+                        although they are typically at the same
+                        hierarchical level as a paragraph.         -->
+<!ENTITY % block-display-noalt.class
+                        "address |
+                         answer | answer-set | array |
+                         boxed-text | chem-struct-wrap | code |
+                         explanation | 
+                         fig | fig-group | graphic | media |
+                         name-address-wrap | preformat | 
+                         question | question-wrap | 
+                         question-wrap-group |
+                         supplementary-material |
+                         table-wrap | table-wrap-group"              >
+
+
+<!--                    DISPLAY CLASS ELEMENTS MINUS EXPLANATION   -->
+<!--                    The same as block-display.class without
+                        the explanation element, for use in 
+                        <answer> and <option> elements.            -->
+<!ENTITY % block-display-minus-explanation.class
+                        "address | alternatives |
+                         answer | answer-set | array |
+                         boxed-text | chem-struct-wrap | code |
+                         fig | fig-group | graphic | media |
+                         name-address-wrap | preformat | 
+                         question | question-wrap | 
+                         question-wrap-group |
+                         supplementary-material |
+                         table-wrap | table-wrap-group"              >
+
+
+<!--                    QUESTION AND ANSWER CLASS                  -->
+<!--                    Questions and answers (also in block display
+                        class, for use in other places).           -->
+<!ENTITY % question-answer.class
+                        "answer | answer-set | explanation |
+                         question |
+                         question-wrap | question-wrap-group"        >
+
+
+<!--                    QUESTION WRAP CLASS                        -->
+<!--                    Class to hold just the element
+                        <question-wrap> for use in models.         -->
+<!ENTITY % question-wrap.class
+                        "question-wrap"                              >
+
+
+<!--                    OPTION-ONLY CLASS                          -->
+<!--                    Holds the <option> element, for use in 
+                        content models.                            -->
+<!ENTITY % option.class "option"                                     >
+
+
+<!--                    ROLE-ONLY CLASS                            -->
+<!--                    Holds the <role> element, for use in 
+                        content models.                            -->
+<!ENTITY % role-only.class
+                        "role"                                       >
+
+
+<!-- ============================================================= -->
+<!--                    BOOK STRUCTURES CLASSES                    -->
+<!-- ============================================================= -->
+
+
+<!--                    BOOK PART CLASS                            -->
+<!--                    Holds the <book-part> element, for use in
+                        content models.                            -->
+<!ENTITY % book-part.class
+                        "book-part | xi:include"                     >
+
+
+<!--                    BOOK-PART BACK MATTER ONLY CLASS           -->
+<!--                    Ancillary elements, used in back matter of
+                        a book                                     -->
+<!ENTITY % book-back-only.class
+                        "book-app | book-app-group | floats-group | 
+                         index | index-group | ref-list"             >
+
+
+<!--                    BACK MATTER ONLY CLASS                     -->
+<!--                    Ancillary elements, used in back matter of
+                        a book or book part.                       -->
+<!ENTITY % back-only.class
+                        "app | app-group | floats-group | index |
+                         index-group | ref-list"                     >
+
+
+<!--                    FOOTNOTE GROUP CLASS                       -->
+<!--                    A class to hold just the <fn-group> element
+                        for use in content models.                 -->
+<!ENTITY % fn-group.class
+                        "fn-group"                                   >
+
+
+<!--                    FRONT ONLY CLASS                           -->
+<!--                    Ancillary elements, used in front matter of
+                        a book or book part.                       -->
+<!ENTITY % front-only.class
+                         "front-matter-part | foreword | preface"    >
+
+
+<!--                    FRONT AND BACK CLASS                       -->
+<!--                    Ancillary elements, typically used in the
+                        front or back matter of an article, but
+                        also as part of book metadata.             -->
+<!ENTITY % front-back.class
+                        "notes"                                      >
+
+
+<!--                    BOTH FRONT AND BACK MATTER CLASS           -->
+<!--                    Ancillary elements, typically used in the
+                        back matter of a <book> or a <book-part>.  -->
+<!ENTITY % both-front-back.class
+                         "ack | bio | dedication | fn-group |
+                          glossary | toc | toc-group"                >
+
+
+<!--                    REFERENCE LIST CLASS                       -->
+<!--                    Class to hold just the <ref-list> element,
+                        so it can be used in t <front-matter>, for 
+                         example.                                  -->
+<!ENTITY % ref-list.class
+                        "ref-list"                                   >
+
+
+<!--                    SECTION BACK MATTER CLASS                  -->
+<!--                    Ancillary elements, typically used in the
+                        back matter of a section, etc.
+                        Added <sig-block> to Publishing.           -->
+<!ENTITY % sec-back.class
+                        "fn-group | glossary | ref-list |
+                         sig-block"                                  >
+
+
+<!--                    SIGNATURE BLOCK CLASS                      -->
+<!--                    Class to hold just the signature block,
+                        which is used in the backs of sections and
+                        book-parts, but not in the back of books.  -->
+<!ENTITY % sig-block.class
+                        "sig-block"                                  >
+
+
+<!--                    XINCLUDE CLASS                             -->
+<!--                    Class to hold just the <xi:include> element
+                        so that it can be used in book front matter
+                        as well as other places.                   -->
+<!ENTITY % xinclude.class
+                        "xi:include"                                 >
+
+
+<!-- ============================================================= -->
+<!--                    INDEX CLASSES                              -->
+<!-- ============================================================= -->
+
+
+<!--                    INDEX CLASS                                -->
+<!--                    Used for grouping multiple Indexes.        -->
+<!ENTITY % index.class  "index"                                      >
+
+
+<!--                    INDEX DIVISION CLASS                       -->
+<!--                    Division, typically for the purposes of
+                        display, in a structural index, for example
+                        a division holding the heading "A" and
+                        all of the initial alphabetically
+                        arranged index entries.                    -->
+<!ENTITY % index-div.class
+                        "index-div"                                  >
+
+
+<!--                    INDEX ENTRY CLASS                          -->
+<!--                    Entry in a structural Index.               -->
+<!ENTITY % index-entry.class
+                        "index-entry"                                >
+
+
+<!--                    NAVIGATION POINTER CLASS                   -->
+<!--                    Navigation pointer for use in a structural
+                        Index or table of contents.                -->
+<!ENTITY % nav-pointer.class
+                        "nav-pointer"                                >
+
+
+<!--                    SEE AND SEE-ALSO ENTRY CLASS               -->
+<!--                    See (use) and see-also (related) entries
+                        in a structural Index.                     -->
+<!ENTITY % see-also-see-entry.class
+                        "see-entry | see-also-entry"                 >
+
+
+<!-- ============================================================= -->
+<!--                    TABLE OF CONTENTS CLASSES                  -->
+<!-- ============================================================= -->
+
+
+<!--                    TABLE OF CONTENTS CLASS                    -->
+<!--                    Used for grouping multiple Tables of Contents.
+                                                                   -->
+<!ENTITY % toc.class    "toc"                                        >
+
+
+<!--                    TABLE OF CONTENTS DIVISION CLASS           -->
+<!--                    Division, typically for the purposes of
+                        display, in a structural ToC, for example
+                        a division holding the first Part of a
+                        3-part book, and the titles of all the
+                        chapters in that Part.                     -->
+<!ENTITY % toc-div.class
+                        "toc-div"                                    >
+
+
+<!--                    TABLE OF CONTENTS ENTRY CLASS              -->
+<!--                    Entry in a structural Table of Contents.   -->
+<!ENTITY % toc-entry.class
+                        "toc-entry"                                  >
+
+
+<!--                    ABTRACT CLASS FOR TABLE OF CONTENTS        -->
+<!--                    Used to add the <abstract> and
+                        <trans-abstract> elements to a Table of
+                        Contents entry <toc-entry>.                -->
+<!ENTITY % toc-abstract.class
+                        "abstract | trans-abstract"                  >
+
+
+<!-- ============================================================= -->
+<!--                    BOTH TABLE OF CONTENTS AND INDEX CLASSES   -->
+<!-- ============================================================= -->
+
+
+<!--                    STRUCTURAL LINKING CLASS                   -->
+<!--                    Elements that might be used to make a link
+                        in a structural Table of Contents, Index,
+                        or similar non-generated structure.        -->
+<!ENTITY % struct-link.class
+                        "ext-link | nav-pointer | nav-pointer-group" >
+
+
+
+<!-- ============================================================= -->
+<!--                    TABLE CLASSES                              -->
+<!-- ============================================================= -->
+
+
+<!--                    ALTERNATIVES DISPLAY CLASS ELEMENTS        -->
+<!--                    Display elements that can be alternatives to
+                        each  other inside an alternatives element.
+                          XHTML Table Model    table
+                          OASIS CALS Table     oasis:table         -->
+<!ENTITY % alternatives-display.class
+                        "array | chem-struct | code | graphic |
+                         inline-graphic |
+                         inline-supplementary-material |
+                         media | preformat | private-char |
+                         supplementary-material |
+                         table | %otable.qname; |
+                         textual-form"                               >
+
+
+<!--                    TABLE CLASS ELEMENTS                       -->
+<!--                    Elements that will be used to contain the
+                        rows and columns inside the Table Wrapper
+                        element <table-wrap>.  The following 
+                        elements can be set up for inclusion:
+                          XHTML Table Model    table
+                          OASIS CALS Table     oasis:table         -->
+<!ENTITY % table.class  "table | %otable.qname;"                     >
+
+
+<!--                    TABLE BODY CLASS                           -->
+<!--                    To include just a table body <tbody>
+                        element. Both XHTML and OASIS table types. -->
+<!ENTITY % tbody.class  "tbody | %otbody.qname;"                     >
+
+
+<!-- ================== End BITS Book Classes Customization ====== -->