studium 0.16.9

data/lib/studium/yaml/curricula/individual/master_bioinformatics_and_nanobiotechnology_in_molecular_medicine.yml

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+# =========================================================================== #
+# === Mastercurriculum Bioinformatics and (nano)biotechnology in molecular medicine
+#
+# This is for the BOKU, the individual curriculum there.
+#
+# In english Schreiben.
+# =========================================================================== #
+# detcur --indi3
+# =========================================================================== #
+# Attribution:
+#
+#    BOKU Wien       52.0 ECTS points (57.8%)
+#    Uni Wien        27.5 ECTS points (30.6%)
+#    Vetmed Wien      5.5 ECTS points ( 6.1%)
+#    Meduni Wien      3.0 ECTS points ( 3.3%)
+#    TU Wien          2.0 ECTS points ( 2.2%)
+#                    90.0 ECTS points
+#
+# =========================================================================== #
+#  1) Mastercurriculum Biotechnology                                                     (066418) → 52.0 ECTS points [ BOKU Wien  ] [57.8%]
+#  2) Mastercurriculum Molekulare Mikrobiologie, Mikrobielle Ökologie und Immunbiologie  (066830) → 21.0 ECTS points [  Uni Wien  ] [23.3%]
+#  3) Mastercurriculum Molekulare Biologie                                               (066834) → 12.0 ECTS points [  Uni Wien  ] [13.3%]
+#  6) Mastercurriculum Genetik und Entwicklungsbiologie                                  (066877) →  6.0 ECTS points [  Uni Wien  ] [ 6.7%]
+#  8) Mastercurriculum Biologische Chemie                                                (066863) →  3.5 ECTS points [  Uni Wien  ] [ 3.9%]
+#  9) Mastercurriculum Medizinische Informatik                                           (066936) →  3.0 ECTS points [Meduni Wien ] [ 3.3%]
+# 10) Mastercurriculum Chemie                                                            (066862) →  2.0 ECTS points [  Uni Wien  ] [ 2.2%]
+# 11) Mastercurriculum Pharmazie                                                         (066605) →  2.0 ECTS points [  Uni Wien  ] [ 2.2%]
+# 12) Mastercurriculum Technische Chemie                                                 (066490) →  2.0 ECTS points [  TU Wien   ] [ 2.2%]
+# 13) Mastercurriculum Interd.Master Human-Animal Interactions                           (066222) →  1.5 ECTS points [Vetmed Wien ] [ 1.7%]
+# 14) Mastercurriculum Bioinformatik                                                     (066875) →  1.5 ECTS points [  Uni Wien  ] [ 1.7%]
+# =========================================================================== #
+# detcur --indi3
+# =========================================================================== #
+
+# =========================================================================== #
+# 60% von 90.0 ECTS sind nit mehr als 66.0 ECTS im Hauptcurriculum.
+# =========================================================================== #
+
+# =========================================================================== #
+# === Module M1 Machine Learning, Artificial Intelligence and Metabolic modeling in bioinformatics (10.0 ECTS)
+#
+# The students acquire essential as well as advanced knowledge from
+# selected topics that can be employed within the context of modern
+# bioinformatics through Module M1.
+#
+# This domain-specific knowledge extends towards concepts originating
+# from Machine Learning, Artificial Intelligence as well as Metabolic
+# modeling and additionally serves as the basis for the two “follow-up”
+# modules M2 (“Sequence Data Analysis and NGS”) and M3 (“Structural
+# bioinformatics and modelling of biomolecules”).
+#
+# Specifically the students will gain practical experience via a
+# thorough practical introduction into microarray datasets and
+# the analysis thereof, as a basis for biochip technologies or
+# lab-on-a-chip setups. Supervised and unsupervised learning
+# models will be introduced, discussed and applied to analyse
+# different datasets automatically via artificial intelligence.
+# Furthermore they will have acquired knowledge about different
+# IT projects that have already successfully employed Machine
+# Learning and A. I. and they will understand use cases ranging
+# from web applications towards wearables as well as how to
+# apply pattern recognition in bioinformatics from a
+# practical point of view.
+# =========================================================================== #
+790384 Machine learning and pattern recognition for bioinformatics (in Eng.)               # 4.0 ECTS, BOKU
+790391 Efficient microarray data analysis using R and FSPMA (in Eng.)                      # 1.0 ECTS, 1.0 SWS, BOKU
+840.001 Aktuelle Themen der Medizinischen Informatik - Artificial Intelligence             # 3.0 ECTS, 2.0 SWS, VO, Meduni Wien
+790355 Introduction to metabolic modelling (in Eng.)                                       # 2.0 ECTS, 2.0 SWS, VU
+
+# =========================================================================== #
+# === Module M2 Sequence Data Analysis and NGS                      (9.0 ECTS)
+#
+# Depends on: M1
+#
+# After having completed Module M1, thus having acquired essential
+# knowledge from different fields of bioinformatics, the participants
+# will develop their knowledge in regards to different datasets used
+# in modern bioinformatics further, including via relevant applied
+# (“hands-on”) training. Module M2 serves primarily as a “toolkit”
+# module for data analysis in bioinformatics, with a particular
+# focus on datasets derived from NGS.
+#
+# The students will acquire a specialized set of knowledge working on
+# *nix-related computer systems primarily (although this may be equally
+# applicable to windows as well, if the WSL is available). They will
+# learn different strategies in how to analyse complex datasets in a
+# “hands-on” manner, including graphical depictions through R,
+# gnuplot and related software suites.
+#
+# After having successfully completed this module, the students will
+# have acquired a very detailed and thorough overview, which may
+# serve as a further basis for their own research activities, as
+# well as being relevant for secondary topics, such as in biotechnology
+# (as an applied science) and in molecular medicine/immunology
+# whenever NGS datasets or similar datasets have to be analysed.
+# The module thus provides a solid framework for extensive
+# computer-related considerations, including a significant
+# amount of practical experience.
+# =========================================================================== #
+790382 High throughput sequencing and genome analysis (in Eng.)                              # 3.0 ECTS, VU, BOKU
+790394 Sequencing data analysis (in Eng.)                                                    # 3.0 ECTS, 3.0 SWS, VU, BOKU
+790381 Essentials for bioinformatics data analysis (in Eng.)                                 # 3.0 ECTS, 2.0 SWS, VU, BOKU
+
+# =========================================================================== #
+# === Module M3 Structural bioinformatics and modelling of biomolecules (9.0 ECTS)
+#
+# Depends on: M1
+#
+# Module M3 focuses on a specific subset from the field of structural
+# bioinformatics that are essential and applicable to both (molecular)
+# biology (such as via modeling for protein structure) and bioinformatics.
+# The prospective graduates will, upon successful completion of this
+# module, understand the computational dynamics associated with
+# predicting 3D structures used in bioinformatics in particular.
+#
+# The students will learn a variety of different software tools to
+# analyse and predict the 3D structure of proteins, as well as
+# become familiar with different databases used for proteins
+# or structure prediction.
+#
+# Module M3 thus can be considered as a further specialization with
+# a focus on computational strategies and extends the knowledge of
+# the prospective graduates into relevant areas.
+# =========================================================================== #
+301185 Structural Bioinformatics I                                   # 3.0 ECTS
+301186 Structural Bioinformatics II                                  # 3.0 ECTS
+894308 Modelling and simulation of biomolecules (in Eng.)            # 3.0 ECTS
+
+# =========================================================================== #
+# === Module M4 Nano(bio)technology and synthetic biology               (13.5 ECTS)
+#
+# Through Module M4 the students will acquire more knowledge from diverse
+# fields such as thse found in nanobiotechnology engineering and synthetic
+# biology. This module's primary objective is thus to extend the knowledge
+# of the prospective graduates into inter-connected aspects from these
+# two main topics.
+#
+# As an extension into synthetic biology the students will acquire more
+# knowledge from the field of bioarchitecture, including membrane-driven
+# architectures as well as sensoric applications (e. g. biosensors),
+# including new uses cases by CRISPR-Cas9, genome editing and
+# related tools. Risk assessment constitutes a (smaller) part
+# of this analysis.
+# =========================================================================== #
+270212 Biomolekulare Nanotechnologie                                              #  1.5 ECTS
+166.647 Synthetische Biologie                                                     #  2.0 ECTS, VO, TU Vienna
+802300 Biological nanosciences and nanotechnology (in Eng.)                       #  2.0 ECTS, VO
+804402 Seminar synthetic biology (in Eng.)                                        #  2.0 ECTS, SE, BOKU
+804301 Synthetic bioarchitectures (in Eng.)                                       #  4.0 ECTS
+270136 Femto- and Nano-Technologies at Interfaces                                 #  2.0 ECTS, VO+SE, Uni Wien
+
+# =========================================================================== #
+# === Module M5 Advanced Concepts from Immunology and Applied Virology (16.0 ECTS)
+#
+# Anmerken im Modul das Immunologie aus anderen LVs vorausgesetzt wird.
+#
+# Upon successful completion of Module M5, the prospective graduates will
+# understand various subtopics from within immunology, including related
+# aspects pertaining to biotechnology such as antibody engineering, as
+# well as concepts from modern applied virology.
+#
+# In the practical course the students will learn - or correspondingly
+# extend – their knowledge in regards to various immunological
+# techniques, such as working with cell cultures, isolating and
+# differentiation of primary cells from bone marrow and spleen,
+# antiviral assays, fluorescence microscopy, luciferase assays,
+# FACS, purification of antibodies, immune precipitation or
+# Western blots. They will also acquire knowledge and experimental
+# skills concerning the innate immune system as well as functional
+# assays on genetically modified mammalian cells. In the hands-on
+# parts the students will use CRISPR-Cas9 technology to create
+# knock-outs of key genes of the innate immune system in human
+# cells. The generated cells will be functionally tested using
+# report assays.
+#
+# The primary objective for Module M5 is to extend the knowledge
+# of the participants into different core immunological aspects,
+# as means of a general extensions towards other topics from
+# molecular medicine and applied biotechnology, including novel
+# considerations in other modules (such as the course "322054
+# Human Gene Therapy" which is part of module M6 “Advanced
+# Concepts from Molecular Medicine”).
+# =========================================================================== #
+301843 Practical Course in Molecular and Cellular Immunobiology                          # 10.0 ECTS, UE, Uni WIen
+790398 Antibody engineering (in Eng.)                                                    #  3.0 ECTS, VO, BOKU
+790310 Applied virology (in Eng.)                                                        #  3.0 ECTS, VO, BOKU
+
+# =========================================================================== #
+# === Module M6 Advanced Concepts from Molecular Medicine          (13.0 ECTS)
+#
+# This module is building upon the Immunology Module. It can also be
+# called "molecular therapies".
+#
+# Depends on: M5
+# =========================================================================== #
+322054 Human Gene Therapy: From basics to clinical applications - M14                    #  1.0 ECTS, VO, Uni Wien
+301585 Molekulare Medizin 1                                                              #  2.0 ECTS, VO, Uni Wien
+301586 Molekulare Medizin 2                                                              #  3.0 ECTS, VO, Uni Wien
+322056 Introduction to Nanomedicine: Nucleic acid therapy and Bioimaging - M14           #  1.0 ECTS, VO, Uni Wien
+790367 Stem cells and tissue engineering (in Eng.)                                       #  3.0 ECTS, VO, BOKU Wien
+790368 Biological therapeutics (in Eng.)                                                 #  2.0 ECTS, VO, BOKU Wien
+301589 Literaturseminar Molekulare Medizin                                               #  1.0 ECTS, SE, Uni Wien
+
+# =========================================================================== #
+# === Module M7 Bioanalytics                                       (7.5 ECTS)
+#
+# Depends on: M4
+# Depends on: M5
+#
+# The fairly compact Module M7 focuses on bioanalytics, in regards
+# to biomarkers, cancer, infection (and infectious disease), as well
+# as how this may relate to immunology or treatment (via medicine).
+#
+# The students will be able to understand which markers are important
+# for cancer development as well as assessing different cancer types
+# and their dangers, and how this may relate to treatment or prediction
+# of malignancies. The students will know how to define a biomarker,
+# which biomarker may be a good one, how to validate biomarkers
+# and how important they are in general.
+#
+# Another focus of this module is to introduce the students to
+# techniques (from genomics, transcriptomics, proteomics and
+# imaging technologies) and how these relate to cancer and
+# immune disease as well as how quality management is important
+# for determining the efficacy of treatments.
+#
+# The module thus has an important supportive role pertaining to
+# immunology / infection and molecule medicine.
+# =========================================================================== #
+530006 Bioanalytische Methoden zur Identifikation und Evaluierung von Biomarkern #  2.0 ECTS, VO, Uni Wien
+500215 Bioanalyse in Cancer und Infection               # 4.0 ECTS, 4.0 SWS, KE, Vetmed Wien
+310103 From infectious diseases to vaccines             # 1.5 ECTS, 0.67 SWS, VO, Vetmed Wien
+
+# =========================================================================== #
+# === Module M8 Biotechnology and Metabolic Engineering (12.0 ECTS)
+#
+# 4 lectures.
+#
+# Depends on: M3
+# Depends on: M4
+#
+# Module M8 investigates selected topics from biotechnology (such as
+# protein engineering or cell culture and femernation) as well as
+# metabolic engineering or practical lab work pertaining to phages,
+# E. coli cells and mouse fibroblast cells.
+#
+# Module M8 attempts to act as the last “unifying” module in this
+# programme, attempting to consolidate the student’s knowledge in
+# various key topics as well as integrate more practical work in
+# regards to lab work or fermentation as “last step” before
+# resuming one’s own master thesis.
+# =========================================================================== # 
+772304 Protein chemistry and protein engineering (in Eng.)                               # 4.0 ECTS, 3.0 SWS, BOKU
+790369 Practical course in cell culture and fermentation (in Eng.)                       # 3.0 ECTS, 3.0 SWS, BOKU
+790356 Metabolic and cell engineering (in Eng.)                                          # 2.0 ECTS, 2.0 SWS, VO, BOKU
+940323 Laboratory course in molecular biology II (in Eng.)                               # 3.0 ECTS, 3.0 SWS, UE, BOKU
+
+# 790351 Cell factories (in Eng.)                                                        #  4.0 ECTS, VO
+# 790304 Strain improvement of microorganisms and higher eukaryotic cells (in Eng.)      #  2.0 ECTS
+
+# =========================================================================== #
+# === Module M9 Mastermodule
+# =========================================================================== #
+
+# =========================================================================== #
+# === Advanced biochemistry and Protein Engineering (9.0 ECTS)
+# =========================================================================== #
+# 772305 Practical course in biochemistry II (in Eng.)                   # 5.0 ECTS, UE
+# 772300 Biophysical chemistry (in Eng.)                                 # 3.0 ECTS, VU
+# 941319 Cell and molecular biology I (in Eng.)                          # 4.0 ECTS, VO
+# 194.076 Modeling and Simulation                                        # 3.0 ECTS
+# 270065 Praktikum zu Bioinformatischen Problemen aus Chemie und Biologie                      # 4.0 ECTS, UE, UNI WIEN
+# 790379 Using bioinformatics for expression profiling by next generation sequencing (in Eng.) # 2.0 ECTS, VU, BOKU
+# 790043 Introduction to algorithms in bioinformatics (in Eng.)                              # 3.0 ECTS, VU, BOKU
+# ^^^ is outdated
+# =========================================================================== #
+# === Imaging (zu 7.0 ECTS)
+# =========================================================================== #
+# 301272 Live imaging course                                                               #  1.0 ECTS, UE, Uni Wien
+# 300291 Elektronenmikroskopie in der Biologie - Methodik, Präparation und Interpretation  #  3.0 ECTS, VO, Uni Wien
+# 803302 Methods in ultrastructure research (in Eng.)                                      #  3.0 ECTS, VO, BOKU
+# 790014 Advanced light and chemical microscopy in life science (in Eng.)                #  3.0 ECTS, VU, BOKU
+# =========================================================================== #
+# === Modul Bioinformatik der Nukleinsäuren
+# =========================================================================== #
+# 270034 Praktikum zur Bioinformatik der Nukleinsäuren                                         # 4.0 ECTS, PR
+# 270054 Bioinformatik der Nukleinsäuren
+# 790383 Bioinformatics: Selected aspects (in Eng.)                                            # 3.0 ECTS, VU, BOKU
+# 790389 Modern bioinformatics (in Eng.)                                                       # 3.0 ECTS, VU, BOKU
+# =========================================================================== #
+# === Computational Concepts in Biology                            (6.0 ECTS)
+# =========================================================================== #
+# 269004 Computational Concepts in Biology I                                                 # 3.0 ECTS, VO, Uni Wien
+# 269020 Computational Concepts in Biology II                                                # 3.0 ECTS, VO, Uni Wien
+# =========================================================================== #
+# === Biochemie
+# =========================================================================== #
+# 166.691 Biochemie, Molekularbiologie und Biotechnologie                                  # 8.0 ECTS, LU; WS
+# =========================================================================== #
+# === Algorithms
+# =========================================================================== #
+# 186.814 Algorithmics                 # 6.0 ECTS, 4.0 SWS, TU Wien
+# 104.345 Analyse von Algorithmen      # 4.5 ECTS
+# 104.347 Analyse von Algorithmen      # 1.5 ECTS
+# 182.702 Distributed Algorithms     # 6.0 ECTS
+# 790305 Antigene und Impfstoffe                                                         #  3.0 ECTS, VO, BOKU