sts 0.4.1 → 0.5.1

data/reference-docs/isosts-v1/JATS-journalpub-oasis-custom-modules0.ent

@@ -0,0 +1,154 @@
+<!-- ============================================================= -->
+<!--  MODULE:    Journal Publishing OASIS DTD-Specific Modules     -->
+<!--  VERSION:   NISO 0.4                                          -->
+<!--  DATE:      January 2011                                      -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//NLM//DTD JATS (Z39.96) Journal Publishing DTD-Specific Modules (OASIS Tables) v0.4 20110131//EN"
+     Delivered as file "JATS-journalpub-oasis-custom-modules0.ent" -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     Journal Publishing DTD of the                     -->
+<!--             Archiving and Interchange DTD Suite               -->
+<!--                                                               -->
+<!-- PURPOSE:    To name any modules created explicitly for this   -->
+<!--             Publishing DTD, that is, not present in the       -->
+<!--             Archiving and Interchange DTD Suite               -->
+<!--                                                               -->
+<!-- CONTAINS:   1)  Full external Parameter Entity declarations   -->
+<!--                 for all DTD-specific modules (Note: the       -->
+<!--                 modules are declared here but referenced in   -->
+<!--                 the Publishing DTD.)                          -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             Digital Archive of Journal Articles               -->
+<!--             National Center for Biotechnology Information     -->
+<!--                (NCBI)                                         -->
+<!--             National Library of Medicine (NLM)                -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             September 2004                                    -->
+<!--                                                               -->
+<!-- CREATED BY: Deborah Lapeyre (Mulberry Technologies, Inc.)     -->
+<!--             B. Tommie Usdin (Mulberry Technologies, Inc.)     -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             this DTD should be sent in email to:              -->
+<!--                 jats@ncbi.nlm.nih.gov                         -->
+<!--                 jats@ncbi.nlm.nih.gov                         -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION/CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+   
+     =============================================================
+     Version 0.4                       (DAL/BTU) v0.4 (2011-01-31)
+   
+     This Tag Set is in the process of becoming a NISO standard.
+     The version numbers are starting over from 0.4", as a Trial
+     Use Draft, to be made into "Version 1.0" when the Tag Suite 
+     becomes a NISO standard. Thus, NLM "Version 3.1 Draft" has 
+     been changed to NISO "Version 0.4". No model, attribute, or
+     parameter entity changes were made as part of this renaming.
+   
+     Details on NISO Tial Use Draft Version 0.4 are available at
+           http://jats.nlm.nih.gov/JATS-0.4.
+   
+  3. Updated the public identifier to "v0.4 20110131//EN", 
+     modified the formal public identifier to include "JATS (Z39.96)",
+     and the filename as delivered to include "JATS" and the
+     new version number "0". Also included the phrase
+     "(OASIS Tables)" in the formal name.
+
+     =============================================================
+     Version 3.1                       (DAL/BTU) v3.1 (2010-04-30)
+
+     Version 3.1 is fully compatible with Version 3.0.
+
+     Details on version 3.1 are available at
+           http://jats.nlm.nih.gov/3.1.
+
+  2. Created this OASIS table model version and assigned
+     public identifier to "v3.1 20100830//EN"
+
+     =============================================================
+     Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)
+
+     Version 3.0 is the first non-backward-compatible release.
+     In addition to the usual incremental changes, some
+     elements and attributes have been renamed and/or remodeled
+     to better meet user needs and to increase tag set consistency.
+     All module change histories are available through the Tag Suite
+     web site at http://dtd.nlm.nih.gov.
+
+     Details on version 3.0 are available at
+           http://jats.nlm.nih.gov/3.0.
+
+  1. Updated public identifier to "v3.0 20080202//EN"              -->
+
+<!-- ============================================================= -->
+<!--                    CUSTOMIZATION MODULES DECLARED             -->
+<!-- ============================================================= -->
+
+
+<!--                    DTD-SPECIFIC CLASS CUSTOMIZATIONS MODULE   -->
+<!--                    Set up the Parameter Entities and element
+                        class definitions that will be used to
+                        over-ride some element classes in the
+                        DTD Suite.                                 -->
+<!ENTITY % journalpub-oasis-custom-classes.ent
+                        PUBLIC
+"-//NLM//DTD JATS (Z39.96) Journal Publishing DTD Customize Classes Module (OASIS Tables) v0.4 20110131//EN"
+"JATS-journalpub-oasis-custom-classes0.ent"                          >
+
+
+<!--                    DTD-SPECIFIC MIX CUSTOMIZATIONS MODULE     -->
+<!--                    Set up the Parameter Entities and element
+                        mix definitions that will be used to
+                        over-ride some element mixes in the DTD
+                        Suite.                                     -->
+<!ENTITY % journalpubcustom-mixes.ent
+                        PUBLIC
+"-//NLM//DTD JATS (Z39.96) Journal Publishing DTD Customize Mixes Module (OASIS Tables) v0.4 20110131//EN"
+"JATS-journalpubcustom-mixes0.ent"                                   >
+
+
+<!--                    DTD-SPECIFIC MODELS/ATTRIBUTES CUSTOMIZATIONS
+                        MODULE                                     -->
+<!--                    Set up the Parameter Entities for element-
+                        specific element groups, complete content
+                        models, and attribute list and value over-
+                        rides. These PEs will over-ride selected
+                        content models and attribute lists for the
+                        Journal Archiving and Interchange DTD.     -->
+<!ENTITY % journalpubcustom-models.ent
+                        PUBLIC
+"-//NLM//DTD JATS (Z39.96) Journal Publishing DTD Customize Content and Attributes Module v0.4 20110131//EN"
+"JATS-journalpubcustom-models0.ent"                                  >
+
+
+<!--                    NLM CITATION MODULE                        -->
+<!--                    The only new element created for the
+                        Publishing DTD, the highly structured NLM
+                        citation, to enforce a slightly loose version
+                        of an NLM-structured bibliographic reference.
+                        Sequence is enforced and interior punctuation
+                        is expected to be generated.               -->
+<!ENTITY % nlmcitation.ent
+                        PUBLIC
+"-//NLM//DTD JATS (Z39.96) NLM Citation v0.4 20110131//EN"
+"JATS-nlmcitation0.ent"                                              >
+
+
+<!-- =================== End Publishing DTD Module of Modules ==== -->

data/reference-docs/isosts-v1/JATS-journalpubcustom-classes0.ent

@@ -0,0 +1,194 @@
+<!-- ============================================================= -->
+<!--  MODULE:    Journal Publishing DTD Customize Classes Module   -->
+<!--  VERSION:   NISO 0.4                                          -->
+<!--  DATE:      January 2011                                      -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//NLM//DTD JATS (Z39.96) Journal Publishing DTD Customize Classes Module v0.4 20110131//EN"
+Delivered as file "JATS-journalpubcustom-classes0.ent"             -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     Journal Publishing DTD of the                     -->
+<!--             Archiving and Interchange DTD Suite               -->
+<!--                                                               -->
+<!-- PURPOSE:    To declare the Parameter Entities (PEs) used to   -->
+<!--             over-ride the named element classes for the       -->
+<!--             journal Publishing DTD, which was developed from  -->
+<!--             the Archiving and Interchange DTD Suite.          -->
+<!--                                                               -->
+<!--             This DTD (in contrast to the Journal Archiving    -->
+<!--             and Interchange DTD) is a more prescriptive       -->
+<!--             DTD than is the Archiving DTD. There are fewer    -->
+<!--             choices in the models within this DTD, and some   -->
+<!--             XML structures that were provided simply to       -->
+<!--             facilitate conversion of existing materials from  -->
+<!--             other DTDs into this format have not been included-->
+<!--             in this version of the DTD.                       -->
+<!--                                                               -->
+<!--             Similarly, this is also a tighter DTD. Some of the-->
+<!--             attributes that have type CDATA values in the     -->
+<!--             Archiving DTD, and can thus accept any value,     -->
+<!--             have been given explicit value lists in this DTD. -->
+<!--                                                               -->
+<!--             Note: Since PEs must be declared before they      -->
+<!--             are used, this module must be called before the   -->
+<!--             content modules that declare elements, and before -->
+<!--             the default classes module.                       -->
+<!--                                                               -->
+<!-- CONTAINS:   1) PEs for changing the contents of the default   -->
+<!--                element classes                                -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             Digital Archive of Journal Articles               -->
+<!--             National Center for Biotechnology Information     -->
+<!--                (NCBI)                                         -->
+<!--             National Library of Medicine (NLM)                -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             September 2004                                    -->
+<!--                                                               -->
+<!-- CREATED BY: Jeff Beck       (NCBI)                            -->
+<!--             Deborah Lapeyre (Mulberry Technologies, Inc.)     -->
+<!--             B. Tommie Usdin (Mulberry Technologies, Inc.)     -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             this DTD should be sent in email to:              -->
+<!--                 jats@ncbi.nlm.nih.gov                         -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION/CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+   
+     =============================================================
+     Version 0.4                       (DAL/BTU) v0.4 (2011-01-31)
+   
+     This Tag Set is in the process of becoming a NISO standard.
+     The version numbers are starting over from 0.4", as a Trial
+     Use Draft, to be made into "Version 1.0" when the Tag Suite 
+     becomes a NISO standard. Thus, NLM "Version 3.1 Draft" has 
+     been changed to NISO "Version 0.4". No model, attribute, or
+     parameter entity changes were made as part of this renaming.
+   
+     Details on NISO Tial Use Draft Version 0.4 are available at
+           http://jats.nlm.nih.gov/JATS-0.4.
+   
+  5. Updated the public identifier to "v0.4 20110131//EN", 
+     modified the formal public identifier to include "JATS (Z39.96)",
+     and the filename as delivered to include "JATS" and the
+     new version number "0".
+
+     =============================================================
+     Version 3.1                       (DAL/BTU) v3.1 (2010-04-30)
+
+     Version 3.1 is fully compatible with Version 3.0.
+
+     Details on version 3.1 are available at
+           http://jats.nlm.nih.gov/3.1.
+
+  4. AFFILIATION ALTERNATIVES - Added the element <aff-alternatives>
+     to contrib-info.class to hold multiple <aff>s that are
+     representations of a single affiliation, for example, the name
+     of an institution in two languages or two scripts.
+
+  3. NAME ALTERNATIVES - Added <name-alternatives> to
+     %name.class;, to therefore be used wherever name is allowed.
+
+  2. Updated public identifier to "v3.1 20100830//EN"
+
+     =============================================================
+     Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)
+
+     Version 3.0 is the first non-backward-compatible release.
+     In addition to the usual incremental changes, some
+     elements and attributes have been renamed and/or remodeled
+     to better meet user needs and to increase tag set consistency.
+     All module change histories are available through the Tag Suite
+     web site at http://dtd.nlm.nih.gov.
+
+     Details on version 3.0 are available at
+           http://jats.nlm.nih.gov/3.0.
+
+  1. Updated public identifier to "v3.0 20080202//EN"              -->
+
+<!-- ============================================================= -->
+<!--                    PARAMETER ENTITIES FOR CLASS OVER-RIDES    -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    OVER-RIDE FORMATTING CLASS (format.ent)    -->
+<!-- ============================================================= -->
+
+
+<!--                    EMPHASIS RENDITION ELEMENTS                -->
+<!ENTITY % emphasis.class
+                        "bold | italic | monospace | overline |
+                         roman |  sans-serif | sc | strike |
+                         underline"                                  >
+
+
+<!-- ============================================================= -->
+<!--                    OVER-RIDE INLINE CLASSES                   -->
+<!-- ============================================================= -->
+
+
+<!--                    CITATION CLASS ELEMENTS                    -->
+<!--                    Reference to an external document, as used
+                        within, for example, the text of a
+                        paragraph                                  -->
+<!ENTITY % citation.class
+                        "element-citation | mixed-citation |
+                         nlm-citation"                               >
+
+
+<!--                    CONTRIBUTOR INFORMATION                    -->
+<!--                    Metadata about a contributor               -->
+<!ENTITY % contrib-info.class
+                        "address | aff | aff-alternatives |
+                         author-comment | bio | email | ext-link |
+                         on-behalf-of | role | uri | xref"           >
+
+
+<!--                    DATE CLASS ELEMENTS                        -->
+<!--                    Dates and other matters of history         -->
+<!ENTITY % date.class   "date"                                       >
+
+
+<!--                    NAMES CLASS                                -->
+<!--                    The elements used to name the personal names
+                        for individuals and the collaboration names
+                        for groups
+                        Removed <string-name>                      -->
+<!ENTITY % name.class   "anonymous | collab | name |
+                         name-alternatives"                          >
+
+
+<!-- ============================================================= -->
+<!--                    OVER-RIDE PARAGRAPH-LIKE ELEMENTS          -->
+<!-- ============================================================= -->
+
+
+<!--                    REST OF PARAGRAPH CLASS (MINUS PARAGRAPH)  -->
+<!--                    Information for the reader that is at the
+                        same structural level as a Paragraph.
+                        Contains all paragraph-level objects that are
+                        not also used inside tables and excepting
+                        also the paragraph element itself.         -->
+<!ENTITY % rest-of-para.class
+                        "disp-quote | speech | statement |
+                         verse-group"                                >
+
+
+<!-- ================== End Publishing Classes Customization ===== -->

data/reference-docs/isosts-v1/JATS-journalpubcustom-mixes0.ent

@@ -0,0 +1,148 @@
+<!-- ============================================================= -->
+<!--  MODULE:    Journal Publishing DTD Customize Mixes Module     -->
+<!--  VERSION:   NISO 0.4                                          -->
+<!--  DATE:      January 2011                                      -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//NLM//DTD JATS (Z39.96) Journal Publishing DTD Customize Mixes Module v0.4 20110131//EN"
+Delivered as file "JATS-journalpubcustom-mixes0.ent"               -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     Journal Publishing DTD of the                     -->
+<!--             Archiving and Interchange DTD Suite               -->
+<!--                                                               -->
+<!-- PURPOSE:    Declares over-ride values for the default element -->
+<!--             mixes in the Suite. These over-rides are specific -->
+<!--             to the Journal Publishing DTD.                    -->
+<!--                                                               -->
+<!--             Note: Since PEs must be declared before they      -->
+<!--             are used, this module must be called before the   -->
+<!--             default mixes modules (%default-mixes;)           -->
+<!--                                                               -->
+<!-- CONTAINS:   1) PEs that define the element mixes to be        -->
+<!--                over-ridden                                    -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             Digital Archive of Journal Articles               -->
+<!--             National Center for Biotechnology Information     -->
+<!--                (NCBI)                                         -->
+<!--             National Library of Medicine (NLM)                -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             September 2004                                    -->
+<!--                                                               -->
+<!-- CREATED BY: Jeff Beck       (NCBI)                            -->
+<!--             Deborah Lapeyre (Mulberry Technologies, Inc.)     -->
+<!--             B. Tommie Usdin (Mulberry Technologies, Inc.)     -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             this DTD should be sent in email to:              -->
+<!--                 jats@ncbi.nlm.nih.gov                         -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION/CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+   
+     =============================================================
+     Version 0.4                       (DAL/BTU) v0.4 (2011-01-31)
+   
+     This Tag Set is in the process of becoming a NISO standard.
+     The version numbers are starting over from 0.4", as a Trial
+     Use Draft, to be made into "Version 1.0" when the Tag Suite 
+     becomes a NISO standard. Thus, NLM "Version 3.1 Draft" has 
+     been changed to NISO "Version 0.4". No model, attribute, or
+     parameter entity changes were made as part of this renaming.
+   
+     Details on NISO Tial Use Draft Version 0.4 are available at
+           http://jats.nlm.nih.gov/JATS-0.4.
+   
+  3. Updated the public identifier to "v0.4 20110131//EN", 
+     modified the formal public identifier to include "JATS (Z39.96)",
+     and the filename as delivered to include "JATS" and the
+     new version number "0".
+
+     =============================================================
+     Version 3.1                       (DAL/BTU) v3.1 (2010-04-30)
+
+     Version 3.1 is fully compatible with Version 3.0.
+
+     Details on version 3.1 are available at
+           http://jats.nlm.nih.gov/3.1.
+
+  2. Updated public identifier to "v3.1 20100830//EN"
+
+     =============================================================
+     Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)
+
+     Version 3.0 is the first non-backward-compatible release.
+     In addition to the usual incremental changes, some
+     elements and attributes have been renamed and/or remodeled
+     to better meet user needs and to increase tag set consistency.
+     All module change histories are available through the Tag Suite
+     web site at http://dtd.nlm.nih.gov.
+
+     Details on version 3.0 are available at
+           http://jats.nlm.nih.gov/3.0.
+
+  1. Updated public identifier to "v3.0 20080202//EN"              -->
+
+<!-- ============================================================= -->
+<!--                    INLINE MIXES FOR USE IN CONTENT MODELS     -->
+<!--                    (MIXES ARE COMPOSED USING CLASSES)         -->
+<!-- ============================================================= -->
+
+
+<!--                    EMPHASIS MIX ELEMENTS                      -->
+<!--                    Elements that may be used inside most of the
+                        emphasis class elements                    -->
+<!ENTITY % emphasized-text
+                        "| %address-link.class; |
+                         %article-link.class; | %emphasis.class;  |
+                         %inline-display.class; |
+                         %inline-math.class; |  %math.class; |
+                         %phrase.class; | %simple-link.class; |
+                         %subsup.class;"                             >
+
+
+<!--                    JUST RENDITION                             -->
+<!--                    Only the simplest of the typographic
+                        emphasis elements, as well as subscript and
+                        superscript.  Usually used in a model that
+                        allows #PCDATA and this restricted mixture.
+                        This mix may be stripped down to only
+                        subscript and superscript by some, more
+                        restrictive DTDs.
+                        MAINTENANCE NOTE: This Parameter Entity
+                        and the related PE "rendition-plus" have
+                        been put in place to restrict the amount of
+                        variability that a person modifying the DTD
+                        through PE redefinition can achieve. Some
+                        elements have been set #PCDATA plus one PE
+                        and some have been set to #PCDATA plus the
+                        other in an effort to allow designers to
+                        modify entire groups of elements, but not
+                        to change similar models individually .    -->
+<!ENTITY % just-rendition
+                        ""                                           >
+
+
+<!--                    SECTION BACK MATTER ELEMENTS               -->
+<!--                    Back matter elements used inside smaller
+                        structures, such as sections and sidebars  -->
+<!ENTITY % sec-back-matter-mix
+                        "%sec-back.class;"                           >
+
+
+<!-- ================== End Publishing DTD Mixes Customization === -->