sts 0.4.1 → 0.5.1

data/reference-docs/isosts-v1/JATS-journalmeta0.ent

@@ -0,0 +1,352 @@
+<!-- ============================================================= -->
+<!--  MODULE:    Journal Metadata Elements                         -->
+<!--  VERSION:   NISO 0.4                                          -->
+<!--  DATE:      January 2011                                      -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Journal Metadata Elements v0.4 20110131//EN"
+     Delivered as file "JATS-journalmeta0.ent"                     -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     Archiving and Interchange DTD Suite               -->
+<!--                                                               -->
+<!-- PURPOSE:    Names all elements used to describe the journal   -->
+<!--             in which the journal article is published.        -->
+<!--                                                               -->
+<!-- CONTAINS:   1. Default values for attribute lists             -->
+<!--             2. Journal metadata content model                 -->
+<!--             3. Journal metadata elements in the order used in -->
+<!--                the journal metadata element                   -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             Digital archives and publishers who wish to       -->
+<!--             create a custom XML DTD for original markup of    -->
+<!--             journal literature, books, and related material,  -->
+<!--             or for archiving and transferring such material   -->
+<!--             between archives.                                 -->
+<!--                                                               -->
+<!--             This DTD is in the public domain. An organization -->
+<!--             that wishes to create its own DTD from the suite  -->
+<!--             may do so without permission from NLM.            -->
+<!--                                                               -->
+<!--             The suite has been set up to be extended using a  -->
+<!--             new DTD file and a new DTD-specific customization -->
+<!--             module to redefine the many Parameter Entities.   -->
+<!--             Do not modify the suite directly or redistribute  -->
+<!--             modified versions of the suite.                   -->
+<!--                                                               -->
+<!--             In the interest of maintaining consistency and    -->
+<!--             clarity for potential users, NLM requests:        -->
+<!--                                                               -->
+<!--             1. If you create a DTD from the Archiving and     -->
+<!--                Interchange DTD Suite and intend to stay       -->
+<!--                compatible with the suite, then please include -->
+<!--                the following statement as a comment in all of -->
+<!--                your DTD modules:                              -->
+<!--                   "Created from, and fully compatible with,   -->
+<!--                    the NISO Z39.96 Journal Article Tag Suite  -->
+<!--                    (JATS)."                                   -->
+<!--                                                               -->
+<!--             2. If you alter one or more modules of the suite, -->
+<!--                then please rename your version and all its    -->
+<!--                modules to avoid any confusion with the        -->
+<!--                original suite. Also, please include the       -->
+<!--                following statement as a comment in all your   -->
+<!--                DTD modules:                                   -->
+<!--                   "Based in part on, but not fully compatible -->
+<!--                    with, the NISO Z39.96 Journal Article Tag  -->
+<!--                    Suite."                                    -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             December 2002                                     -->
+<!--                                                               -->
+<!-- CREATED BY: Jeff Beck       (NCBI)                            -->
+<!--             Deborah Lapeyre (Mulberry Technologies, Inc.)     -->
+<!--             Bruce Rosenblum (Inera Inc.)                      -->
+<!--             B. Tommie Usdin (Mulberry Technologies, Inc.)     -->
+<!--                                                               -->
+<!--             NLM thanks the Harvard University Libraries, both -->
+<!--             for proposing that a draft archiving NLM DTD for  -->
+<!--             life sciences journals be extended to accommodate -->
+<!--             journals in all disciplines and for sponsoring    -->
+<!--             Bruce Rosenblum's collaboration with other DTD    -->
+<!--             authors in completing NLM Version 1.0. The        -->
+<!--             Andrew W. Mellon Foundation provided support for  -->
+<!--             these important contributions.                    -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             the DTD suite should be sent in email to:         -->
+<!--                 jats@ncbi.nlm.nih.gov                         -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION/CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+   
+     =============================================================
+     Version 0.4                       (DAL/BTU) v0.4 (2011-01-31)
+   
+     This Tag Set is in the process of becoming a NISO standard.
+     The version numbers are starting over from 0.4", as a Trial
+     Use Draft, to be made into "Version 1.0" when the Tag Suite 
+     becomes a NISO standard. Thus, NLM "Version 3.1 Draft" has 
+     been changed to NISO "Version 0.4". No model, attribute, or
+     parameter entity changes were made as part of this renaming.
+   
+     Details on NISO Tial Use Draft Version 0.4 are available at
+           http://jats.nlm.nih.gov/JATS-0.4.
+   
+  8. Updated the public identifier to "v0.4 20110131//EN", 
+     modified the formal public identifier to include "JATS (Z39.96)",
+     and the filename as delivered to include "JATS" and the
+     new version number "0".
+
+     =============================================================
+     Version 3.1                       (DAL/BTU) v3.1 (2010-04-30)
+
+     Version 3.1 is fully compatible with Version 3.0.
+
+     Details on version 3.1 are available at
+           http://jats.nlm.nih.gov/3.1.
+
+  7. I18N - Changed the default for @xml:lang from "en" to
+     #IMPLIED, so that the @xml:lang would inherit properly and
+     not need to be over-ridden in
+      - <abbrev-journal-title> through %abbrev-journal-title-atts;
+      - <journal-title> through %journal-title-atts;
+      - <journal-subtitle> through %journal-subtitle-atts;
+
+  6. JOURNAL METADATA- Added <notes> to repeat within <journal-meta>
+     (through %journal-meta-model; and added @xml:lang and
+     @specific-use to the attributes of <notes> through %notes-atts;
+
+  5. @SPECIFIC-USE and @XML:LANG - Added the @specific-use and
+     @xml:lang to the following elements:
+      - abbrev-journal-title through abbrev-journal-title-atts
+          (@specific-use-only; @xml:lang already)
+      - journal-title through journal-title-atts
+          (@specific-use-only;
+      - journal-subtitle through journal-subtitle-atts
+          (@specific-use-only)
+
+  4. JOURNAL TITLE ELEMENTS - Removed the dependency which had both
+     <journal-title> and <journal-subtitle> modeled with the same
+     parameter entity %journal-title-elements;. Created new PE for
+     %journal-subtitle-elements; but set it (as the default) to
+     %journal-title-elements; so that no customization would break.
+
+  3. SELF URI - Added <self-uri> to <journal-meta> (directly
+     following <notes>) so that an XML document can point to the
+     journal home page.
+
+  2. Updated public identifier to "v3.1 20100830//EN"
+
+     =============================================================
+     Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)
+
+     Version 3.0 is the first non-backward-compatible release.
+     In addition to the usual incremental changes, some
+     elements and attributes have been renamed and/or remodeled
+     to better meet user needs and to increase tag set consistency.
+     All module change histories are available through the Tag Suite
+     web site at http://dtd.nlm.nih.gov.
+
+     Details on version 3.0 are available at
+           http://jats.nlm.nih.gov/3.0.
+
+  2. Changed default @xml:lang from "EN" from "en" to match latest
+     RFC 4646/W3C/IANA Subtag Registry recommendations
+
+  1. Updated public identifier to "v3.0 20080202//EN"              -->
+
+
+<!-- ============================================================= -->
+<!--                    DEFAULTS FOR ATTRIBUTE LISTS               -->
+<!-- ============================================================= -->
+
+
+<!--                    ABBREVIATED JOURNAL TITLE ATTRIBUTES       -->
+<!--                    Attribute list for Abbreviated Journal Title
+                        <abbrev-journal-title> element             -->
+<!ENTITY % abbrev-journal-title-atts
+            "abbrev-type
+                        CDATA                             #IMPLIED
+             specific-use
+                        CDATA                             #IMPLIED
+             xml:lang   NMTOKEN                           #IMPLIED"  >
+
+
+<!--                    JOURNAL TITLE ATTRIBUTES                   -->
+<!--                    Attributes for the <journal-title>
+                        element                                    -->
+<!ENTITY % journal-title-atts
+            "content-type
+                        CDATA                             #IMPLIED
+             specific-use
+                        CDATA                             #IMPLIED
+             xml:lang   NMTOKEN                           #IMPLIED"  >
+
+
+<!--                    JOURNAL TITLE GROUP ATTRIBUTES             -->
+<!--                    Attributes for the <journal-title-group>
+                        element                                    -->
+<!ENTITY % journal-title-group-atts
+             "content-type
+                        CDATA                              #IMPLIED" >
+
+
+<!--                    JOURNAL SUBTITLE GROUP ATTRIBUTES          -->
+<!--                    Attributes for the <journal-subtitle>
+                        element                                    -->
+<!ENTITY % journal-subtitle-atts
+            "content-type
+                        CDATA                              #IMPLIED
+             specific-use
+                        CDATA                             #IMPLIED
+             xml:lang  NMTOKEN                            #IMPLIED"  >
+
+
+<!-- ============================================================= -->
+<!--                    JOURNAL METADATA                           -->
+<!-- ============================================================= -->
+
+
+<!--                    JOURNAL METADATA MODEL                     -->
+<!--                    Content model for the journal metadata
+                        element <journal-meta>                     -->
+<!ENTITY % journal-meta-model
+                        "(journal-id*, journal-title-group*, issn*,
+                          isbn*, publisher?, notes*, self-uri*,
+                          custom-meta-group?)"                       >
+
+
+<!--ELEM   journal-id   Defined in %common0.ent"                   -->
+<!--ELEM   issn         Defined in %common0.ent"                   -->
+<!--ELEM   publisher    Defined in %common0.ent"                   -->
+<!--ELEM   notes        Defined in %common0.ent"                   -->
+<!--ELEM   custom-meta-group
+                        Defined in %common0.ent"                   -->
+
+
+<!--                    JOURNAL METADATA                           -->
+<!--                    Metadata that identifies the journal in which
+                        the article was published
+                        Details at:
+                        http://jats.nlm.nih.gov/archiving/tag-library/0.4/index.html?elem=journal-meta
+                        http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=journal-meta
+                                                                   -->
+<!ELEMENT  journal-meta %journal-meta-model;                         >
+
+
+<!-- ============================================================= -->
+<!--                    JOURNAL TITLE ELEMENTS                     -->
+<!-- ============================================================= -->
+
+
+<!--                    JOURNAL TITLE GROUP MODEL                  -->
+<!--                    Content model for the element
+                        <journal-title-group>                      -->
+<!ENTITY % journal-title-group-model
+                        "(journal-title*, journal-subtitle*,
+                          trans-title-group*, abbrev-journal-title*)">
+
+
+<!--ELEM   trans-title-group
+                        Defined in %common0.ent"                   -->
+
+
+<!--                    JOURNAL TITLE GROUP                        -->
+<!--                    A container element to hold the title and
+                        its subtitle (if any) for the journal in which
+                        the article was published.
+                        Details at:
+                        http://jats.nlm.nih.gov/archiving/tag-library/0.4/index.html?elem=journal-title-group
+                        http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=journal-title-group
+                                                                   -->
+<!ELEMENT  journal-title-group
+                        %journal-title-group-model;                  >
+<!ATTLIST  journal-title-group
+             %journal-title-group-atts;                              >
+
+
+<!--                    JOURNAL TITLE ELEMENTS                     -->
+<!--                    The elements that can be included along with
+                        data characters inside the content model of
+                        a <journal-title>
+                        Design Note: This PE begins with an OR
+                        bar because %just-rendition; begins with an
+                        OR bar.                                    -->
+<!ENTITY % journal-title-elements
+                        "%just-rendition;"                           >
+
+
+<!--                    JOURNAL TITLE (FULL)                       -->
+<!--                    The title of the journal in which the
+                        article is published.
+                        Details at:
+                        http://jats.nlm.nih.gov/archiving/tag-library/0.4/index.html?elem=journal-title
+                        http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=journal-title
+                                                                   -->
+<!ELEMENT  journal-title
+                        (#PCDATA %journal-title-elements;)*          >
+<!ATTLIST  journal-title
+             %journal-title-atts;                                    >
+
+
+<!--                    JOURNAL SUBTITLE ELEMENTS                  -->
+<!--                    The elements that can be included along with
+                        data characters inside the content model of
+                        a <journal-subtitle>                       -->
+<!ENTITY % journal-subtitle-elements
+                        "%journal-title-elements;"                   >
+
+
+<!--                    JOURNAL SUBTITLE                           -->
+<!--                    The subtitle of the journal in which the
+                        article is published.
+                        Details at:
+                        http://jats.nlm.nih.gov/archiving/tag-library/0.4/index.html?elem=journal-subtitle
+                        http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=journal-subtitle
+                                                                   -->
+<!ELEMENT  journal-subtitle
+                        (#PCDATA %journal-subtitle-elements;)*       >
+<!ATTLIST  journal-subtitle
+             %journal-subtitle-atts;                                 >
+
+
+<!--                    ABBREVIATED JOURNAL TITLE ELEMENTS         -->
+<!--                    The elements that can be included along with
+                        data characters inside the content model of
+                        a <abbrev-journal-title>
+                        Design Note: This PE begins with an OR
+                        bar because %just-rendition; begins with an
+                        OR bar.                                    -->
+<!ENTITY % abbrev-journal-title-elements
+                        "%just-rendition;"                           >
+
+
+<!--                    ABBREVIATED JOURNAL TITLE                  -->
+<!--                    A short form of the title of the journal
+                        in which the article is published.
+                        Details at:
+                        http://jats.nlm.nih.gov/archiving/tag-library/0.4/index.html?elem=abbrev-journal-title
+                        http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=abbrev-journal-title
+                                                                   -->
+<!ELEMENT  abbrev-journal-title
+                        (#PCDATA %abbrev-journal-title-elements;)*   >
+<!ATTLIST  abbrev-journal-title
+             %abbrev-journal-title-atts;                             >
+
+
+<!-- ================== End Journal Metadata Elements  =========== -->

data/reference-docs/isosts-v1/JATS-journalpub-oasis-custom-classes0.ent

@@ -0,0 +1,220 @@
+<!-- ============================================================= -->
+<!--  MODULE:    Journal Publishing DTD Customize Classes Module   -->
+<!--  VERSION:   NISO 0.4                                          -->
+<!--  DATE:      January 2011                                      -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//NLM//DTD JATS (Z39.96) Journal Publishing DTD Customize Classes Module (OASIS Tables) v0.4 20110131//EN"
+Delivered as file "JATS-journalpub-oasis-custom-classes0.ent"      -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     Journal Publishing DTD of the                     -->
+<!--             Archiving and Interchange DTD Suite               -->
+<!--                                                               -->
+<!-- PURPOSE:    To declare the Parameter Entities (PEs) used to   -->
+<!--             over-ride the named element classes for the       -->
+<!--             journal Publishing DTD, which was developed from  -->
+<!--             the Archiving and Interchange DTD Suite.          -->
+<!--                                                               -->
+<!--             This DTD (in contrast to the Journal Archiving    -->
+<!--             and Interchange DTD) is a more prescriptive       -->
+<!--             DTD than is the Archiving DTD. There are fewer    -->
+<!--             choices in the models within this DTD, and some   -->
+<!--             XML structures that were provided simply to       -->
+<!--             facilitate conversion of existing materials from  -->
+<!--             other DTDs into this format have not been included-->
+<!--             in this version of the DTD.                       -->
+<!--                                                               -->
+<!--             Similarly, this is also a tighter DTD. Some of the-->
+<!--             attributes that have type CDATA values in the     -->
+<!--             Archiving DTD, and can thus accept any value,     -->
+<!--             have been given explicit value lists in this DTD. -->
+<!--                                                               -->
+<!--             Note: Since PEs must be declared before they      -->
+<!--             are used, this module must be called before the   -->
+<!--             content modules that declare elements, and before -->
+<!--             the default classes module.                       -->
+<!--                                                               -->
+<!-- CONTAINS:   1) PEs for changing the contents of the default   -->
+<!--                element classes                                -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             Digital Archive of Journal Articles               -->
+<!--             National Center for Biotechnology Information     -->
+<!--                (NCBI)                                         -->
+<!--             National Library of Medicine (NLM)                -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             September 2004                                    -->
+<!--                                                               -->
+<!-- CREATED BY: Deborah Lapeyre (Mulberry Technologies, Inc.)     -->
+<!--             B. Tommie Usdin (Mulberry Technologies, Inc.)     -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             this DTD should be sent in email to:              -->
+<!--                 jats@ncbi.nlm.nih.gov                         -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION/CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+   
+     =============================================================
+     Version 0.4                       (DAL/BTU) v0.4 (2011-01-31)
+   
+     This Tag Set is in the process of becoming a NISO standard.
+     The version numbers are starting over from 0.4", as a Trial
+     Use Draft, to be made into "Version 1.0" when the Tag Suite 
+     becomes a NISO standard. Thus, NLM "Version 3.1 Draft" has 
+     been changed to NISO "Version 0.4". No model, attribute, or
+     parameter entity changes were made as part of this renaming.
+   
+     Details on NISO Tial Use Draft Version 0.4 are available at
+           http://jats.nlm.nih.gov/JATS-0.4.
+   
+  6. Updated the public identifier to "v0.4 20110131//EN", 
+     modified the formal public identifier to include "JATS (Z39.96)",
+     and the filename as delivered to include "JATS" and the
+     new version number "0". Also included the phrase
+     "(OASIS Tables)" in the formal name.
+
+     =============================================================
+     Version 3.1                       (DAL/BTU) v3.1 (2010-04-30)
+
+     Version 3.1 is fully compatible with Version 3.0.
+
+     Details on version 3.1 are available at
+           http://jats.nlm.nih.gov/3.1.
+
+  5. TABLE ELEMENTS- Added the OASIS CALS Table model to the
+     table classes.
+
+  4. AFFILIATION ALTERNATIVES - Added the element <aff-alternatives>
+     to contrib-info.class to hold multiple <aff>s that are
+     representations of a single affiliation, for example, the name
+     of an institution in two languages or two scripts.
+
+  3. NAME ALTERNATIVES - Added <name-alternatives> to
+     %name.class;, to therefore be used wherever name is allowed.
+
+  2. Created May 2010 as part of adding Publishing OASIS model
+     that uses the OASIS CALS Exchange Table Model rather than the
+     XHTML model. Public identifier set to "v3.1 20100830//EN"
+
+     =============================================================
+     Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)
+
+     Version 3.0 is the first non-backward-compatible release.
+     In addition to the usual incremental changes, some
+     elements and attributes have been renamed and/or remodeled
+     to better meet user needs and to increase tag set consistency.
+     All module change histories are available through the Tag Suite
+     web site at http://dtd.nlm.nih.gov.
+
+     Details on version 3.0 are available at
+           http://jats.nlm.nih.gov/3.0.
+
+  1. Updated public identifier to "v3.0 20080202//EN"              -->
+
+<!-- ============================================================= -->
+<!--                    PARAMETER ENTITIES FOR CLASS OVER-RIDES    -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    OVER-RIDE FORMATTING CLASS (format.ent)    -->
+<!-- ============================================================= -->
+
+
+<!--                    EMPHASIS RENDITION ELEMENTS                -->
+<!ENTITY % emphasis.class
+                        "bold | italic | monospace | overline |
+                         roman |  sans-serif | sc | strike |
+                         underline"                                  >
+
+
+<!-- ============================================================= -->
+<!--                    OVER-RIDE INLINE CLASSES                   -->
+<!-- ============================================================= -->
+
+
+<!--                    CITATION CLASS ELEMENTS                    -->
+<!--                    Reference to an external document, as used
+                        within, for example, the text of a
+                        paragraph                                  -->
+<!ENTITY % citation.class
+                        "element-citation | mixed-citation |
+                         nlm-citation"                               >
+
+
+<!--                    CONTRIBUTOR INFORMATION                    -->
+<!--                    Metadata about a contributor               -->
+<!ENTITY % contrib-info.class
+                        "address | aff | aff-alternatives |
+                         author-comment | bio | email | ext-link |
+                         on-behalf-of | role | uri | xref"           >
+
+
+<!--                    DATE CLASS ELEMENTS                        -->
+<!--                    Dates and other matters of history         -->
+<!ENTITY % date.class   "date"                                       >
+
+
+<!--                    NAMES CLASS                                -->
+<!--                    The elements used to name the personal names
+                        for individuals and the collaboration names
+                        for groups
+                        Removed <string-name>                      -->
+<!ENTITY % name.class   "anonymous | collab | name |
+                         name-alternatives"                          >
+
+
+<!-- ============================================================= -->
+<!--                    TABLE CLASSES                              -->
+<!-- ============================================================= -->
+
+
+<!--                    TABLE CLASS ELEMENTS                       -->
+<!--                    Elements that will be used to contain the
+                        rows and columns inside the Table Wrapper
+                        element <tbl>.  The following elements can
+                        be set up for inclusion:
+                          XHTML Table Model    table
+                          OASIS CALS Table     oasis:table         -->
+<!ENTITY % table.class  "table | oasis:table"                        >
+
+
+<!--                    TABLE BODY CLASS                           -->
+<!--                    To include just a table <tale-wrap>
+                        element                                    -->
+<!ENTITY % tbody.class  "tbody | oasis:tbody"                        >
+
+
+<!-- ============================================================= -->
+<!--                    OVER-RIDE PARAGRAPH-LIKE ELEMENTS          -->
+<!-- ============================================================= -->
+
+
+<!--                    REST OF PARAGRAPH CLASS (MINUS PARAGRAPH)  -->
+<!--                    Information for the reader that is at the
+                        same structural level as a Paragraph.
+                        Contains all paragraph-level objects that are
+                        not also used inside tables and excepting
+                        also the paragraph element itself.         -->
+<!ENTITY % rest-of-para.class
+                        "disp-quote | speech | statement |
+                         verse-group"                                >
+
+
+<!-- ================== End Publishing Classes Customization ===== -->