sts 0.4.1 → 0.5.0

data/reference-docs/isosts-v1/JATS-math0.ent

@@ -0,0 +1,307 @@
+<!-- ============================================================= -->
+<!--  MODULE:    Math Class Elements                               -->
+<!--  VERSION:   NISO 0.4                                          -->
+<!--  DATE:      January 2011                                      -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Math Class Elements v0.4 20110131//EN"
+     Delivered as file "JATS-math0.ent"                            -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     Archiving and Interchange DTD Suite               -->
+<!--                                                               -->
+<!-- PURPOSE:    Names all elements in the math classes            -->
+<!--                                                               -->
+<!-- CONTAINS:   1) Default definition of the math classes         -->
+<!--             2) Inline formula <inline-formula>                -->
+<!--             3) Display Formula <disp-formula>                 -->
+<!--             4) TeX Math Equation <tex-math>                   -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             Digital archives and publishers who wish to       -->
+<!--             create a custom XML DTD for original markup of    -->
+<!--             journal literature, books, and related material,  -->
+<!--             or for archiving and transferring such material   -->
+<!--             between archives.                                 -->
+<!--                                                               -->
+<!--             This DTD is in the public domain. An organization -->
+<!--             that wishes to create its own DTD from the suite  -->
+<!--             may do so without permission from NLM.            -->
+<!--                                                               -->
+<!--             The suite has been set up to be extended using a  -->
+<!--             new DTD file and a new DTD-specific customization -->
+<!--             module to redefine the many Parameter Entities.   -->
+<!--             Do not modify the suite directly or redistribute  -->
+<!--             modified versions of the suite.                   -->
+<!--                                                               -->
+<!--             In the interest of maintaining consistency and    -->
+<!--             clarity for potential users, NLM requests:        -->
+<!--                                                               -->
+<!--             1. If you create a DTD from the Archiving and     -->
+<!--                Interchange DTD Suite and intend to stay       -->
+<!--                compatible with the suite, then please include -->
+<!--                the following statement as a comment in all of -->
+<!--                your DTD modules:                              -->
+<!--                   "Created from, and fully compatible with,   -->
+<!--                    the NISO Z39.96 Journal Article Tag Suite  -->
+<!--                    (JATS)."                                   -->
+<!--                                                               -->
+<!--             2. If you alter one or more modules of the suite, -->
+<!--                then please rename your version and all its    -->
+<!--                modules to avoid any confusion with the        -->
+<!--                original suite. Also, please include the       -->
+<!--                following statement as a comment in all your   -->
+<!--                DTD modules:                                   -->
+<!--                   "Based in part on, but not fully compatible -->
+<!--                    with, the NISO Z39.96 Journal Article Tag  -->
+<!--                    Suite."                                    -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             December 2002                                     -->
+<!--                                                               -->
+<!-- CREATED BY: Jeff Beck       (NCBI)                            -->
+<!--             Deborah Lapeyre (Mulberry Technologies, Inc.)     -->
+<!--             Bruce Rosenblum (Inera Inc.)                      -->
+<!--             B. Tommie Usdin (Mulberry Technologies, Inc.)     -->
+<!--                                                               -->
+<!--             NLM thanks the Harvard University Libraries, both -->
+<!--             for proposing that a draft archiving NLM DTD for  -->
+<!--             life sciences journals be extended to accommodate -->
+<!--             journals in all disciplines and for sponsoring    -->
+<!--             Bruce Rosenblum's collaboration with other DTD    -->
+<!--             authors in completing NLM Version 1.0. The        -->
+<!--             Andrew W. Mellon Foundation provided support for  -->
+<!--             these important contributions.                    -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             the DTD suite should be sent in email to:         -->
+<!--                 jats@ncbi.nlm.nih.gov                         -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION/CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+   
+     =============================================================
+     Version 0.4                       (DAL/BTU) v0.4 (2011-01-31)
+   
+     This Tag Set is in the process of becoming a NISO standard.
+     The version numbers are starting over from 0.4", as a Trial
+     Use Draft, to be made into "Version 1.0" when the Tag Suite 
+     becomes a NISO standard. Thus, NLM "Version 3.1 Draft" has 
+     been changed to NISO "Version 0.4". No model, attribute, or
+     parameter entity changes were made as part of this renaming.
+   
+     Details on NISO Tial Use Draft Version 0.4 are available at
+           http://jats.nlm.nih.gov/JATS-0.4.
+   
+  4. Updated the public identifier to "v0.4 20110131//EN", 
+     modified the formal public identifier to include "JATS (Z39.96)",
+     and the filename as delivered to include "JATS" and the
+     new version number "0".
+
+     =============================================================
+     Version 3.1                       (DAL/BTU) v3.1 (2010-04-30)
+
+     Version 3.1 is fully compatible with Version 3.0.
+
+     Details on version 3.1 are available at
+           http://jats.nlm.nih.gov/3.1.
+
+  3. @SPECIFIC-USE and @XML:LANG - Added the @specific-use and
+     @xml:lang to the following elements:
+
+      - disp-formula through disp-formula-atts (@xml:lang-only;
+          @specific-use already)
+      - disp-formula-group through disp-formula-group-atts
+          (@xml:lang-only; @specific-use already)
+      - inline-formula through inline-formula-atts
+          (@specific-use-only; @xml:lang already)
+
+  2. Updated public identifier to "v3.1 20100830//EN"
+
+     =============================================================
+     Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)
+
+     Version 3.0 is the first non-backward-compatible release.
+     In addition to the usual incremental changes, some
+     elements and attributes have been renamed and/or remodeled
+     to better meet user needs and to increase tag set consistency.
+     All module change histories are available through the Tag Suite
+     web site at http://dtd.nlm.nih.gov.
+
+     Details on version 3.0 are available at
+           http://jats.nlm.nih.gov/3.0.
+
+  1. Updated public identifier to "v3.0 20080202//EN"              -->
+
+<!-- ============================================================= -->
+<!--                    PARAMETER ENTITIES FOR ATTRIBUTE LISTS     -->
+<!-- ============================================================= -->
+
+
+<!--                    DISPLAY FORMULA ATTRIBUTES                 -->
+<!--                    Attributes for the <disp-formula> element  -->
+<!ENTITY % disp-formula-atts
+            "id         ID                                #IMPLIED
+             content-type
+                        CDATA                             #IMPLIED
+             specific-use
+                        CDATA                             #IMPLIED
+             xml:lang   NMTOKEN                           #IMPLIED"  >
+
+
+<!--                    DISPLAY FORMULA GROUP ATTRIBUTES           -->
+<!--                    Attributes for the <disp-formula-group>
+                        element                                    -->
+<!ENTITY % disp-formula-group-atts
+            "id         ID                                #IMPLIED
+             content-type
+                        CDATA                             #IMPLIED
+             specific-use
+                        CDATA                             #IMPLIED
+             xml:lang   NMTOKEN                           #IMPLIED"  >
+
+
+<!--                    INLINE FORMULA ATTRIBUTES                  -->
+<!--                    Attribute list for the <inline-formula>
+                        element                                    -->
+<!ENTITY % inline-formula-atts
+            "id         ID                                #IMPLIED
+             content-type
+                        CDATA                             #IMPLIED
+             specific-use
+                        CDATA                             #IMPLIED
+             xml:lang   NMTOKEN                           #IMPLIED"  >
+
+
+<!--                    TEX MATH ATTRIBUTES                        -->
+<!--                    Attributes for the <disp-formula> element  -->
+<!ENTITY % tex-math-atts
+            "id         ID                                #IMPLIED
+             content-type
+                        CDATA                             #IMPLIED
+             notation   NOTATION (LaTeX | tex | TEX | TeX)
+                                                          #IMPLIED
+             version    CDATA                             #IMPLIED"  >
+
+
+<!-- ============================================================= -->
+<!--                    MATH ELEMENTS (INLINE LEVEL)               -->
+<!-- ============================================================= -->
+
+
+<!--                    FORMULA, INLINE ELEMENTS                   -->
+<!--                    Elements for use in the <inline-formula>
+                        element                                    -->
+<!ENTITY % inline-formula-elements
+                        "| %emphasis.class; | %inline-display.class; |
+                         %inline-math.class; |
+                         %math.class; |
+                         %phrase-content.class; | %subsup.class;"    >
+
+
+<!--                    FORMULA, INLINE MODEL                      -->
+<!--                    Content model for an <inline-formula>      -->
+<!ENTITY % inline-formula-model
+                        "(#PCDATA %inline-formula-elements;)*"       >
+
+
+<!--                    FORMULA, INLINE                            -->
+<!--                    Inline element for a mathematical
+                        equation, expression, or formula
+                        Details at:
+                        http://jats.nlm.nih.gov/archiving/tag-library/0.4/index.html?elem=inline-formula
+                        http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=inline-formula
+                        http://jats.nlm.nih.gov/articleauthoring/tag-library/0.4/index.html?elem=inline-formula
+                                                                   -->
+<!ELEMENT  inline-formula
+                        %inline-formula-model;                       >
+<!ATTLIST  inline-formula
+             %inline-formula-atts;                                   >
+
+
+<!-- ============================================================= -->
+<!--                    MATH ELEMENTS (INLINE LEVEL)               -->
+<!-- ============================================================= -->
+
+
+<!--                    DISPLAY FORMULA ELEMENTS                   -->
+<!--                    Elements for use in the <disp-formula>
+                        element                                    -->
+<!ENTITY % disp-formula-elements
+                        "| %access.class; | %address-link.class; |
+                         %break.class; | %emphasis.class; |
+                         %inline-display-noalt.class; |
+                         %inline-math.class; | %label.class; |
+                         %phrase-content.class; |
+                         %math.class; |  %simple-display.class; |
+                         %subsup.class;"                             >
+
+
+<!--                    FORMULA, DISPLAY MODEL                     -->
+<!--                    Content model for an <disp-formula>        -->
+<!ENTITY % disp-formula-model
+                        "(#PCDATA %disp-formula-elements;)*"         >
+
+
+<!--                    FORMULA, DISPLAY                           -->
+<!--                    Block-level (callout) element for a
+                        mathematical equation, expression, or
+                        formula.
+                        Details at:
+                        http://jats.nlm.nih.gov/archiving/tag-library/0.4/index.html?elem=disp-formula
+                        http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=disp-formula
+                        http://jats.nlm.nih.gov/articleauthoring/tag-library/0.4/index.html?elem=disp-formula
+                                                                   -->
+<!ELEMENT  disp-formula %disp-formula-model;                         >
+<!ATTLIST  disp-formula
+             %disp-formula-atts;                                     >
+
+
+<!--                    FORMULA, DISPLAY GROUP MODEL               -->
+<!--                    Content model for an <disp-formula-group>  -->
+<!ENTITY % disp-formula-group-model
+                        "(label?, (%caption.class;)?,
+                          (%access.class; | %address-link.class;)*,
+                          (%block-math.class;)* )"                   >
+
+
+<!--                    FORMULA, DISPLAY GROUP                     -->
+<!--                    Used for a group of equations or other
+                        mathematical expressions that are displayed
+                        together.
+                        Details at:
+                        http://jats.nlm.nih.gov/archiving/tag-library/0.4/index.html?elem=disp-formula-group
+                        http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=disp-formula-group
+                        http://jats.nlm.nih.gov/articleauthoring/tag-library/0.4/index.html?elem=disp-formula-group
+                                                                   -->
+<!ELEMENT  disp-formula-group
+                        %disp-formula-group-model;                   >
+<!ATTLIST  disp-formula-group
+             %disp-formula-group-atts;                               >
+
+
+<!--                    TEX MATH EQUATION                          -->
+<!--                    Used to hold encoded math, expressed in TeX
+                        Details at:
+                        http://jats.nlm.nih.gov/archiving/tag-library/0.4/index.html?elem=tex-math
+                        http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=tex-math
+                                                                   -->
+<!ELEMENT  tex-math     (#PCDATA)                                    >
+<!ATTLIST  tex-math
+             %tex-math-atts;                                         >
+
+
+<!-- ================== End Math Class Elements Module =========== -->

data/reference-docs/isosts-v1/JATS-mathmlsetup0.ent

@@ -0,0 +1,266 @@
+<!-- ============================================================= -->
+<!--  MODULE:    MathML DTD SETUP MODULE                           -->
+<!--  VERSION:   NISO 0.4                                          -->
+<!--  DATE:      January 2011                                      -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite MathML Setup Module v0.4 20110131//EN"
+     Delivered as file "JATS-mathmlsetup0.ent"                     -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     Archiving and Interchange DTD Suite               -->
+<!--                                                               -->
+<!-- PURPOSE:    Provides the organization for using the           -->
+<!--             MathML DTD                                        -->
+<!--                                                               -->
+<!-- CONTAINS:   1) Overrides to standard parameter entities used  -->
+<!--                in the MathML 2.0 DTD                          -->
+<!--             2) Call to MathML 2.0 DTD                         -->
+<!--                                                               -->
+<!-- MODULES REQUIRED:                                             -->
+<!--             1) mathml2.dtd           MathML 2.0 DTD           -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             Digital archives and publishers who wish to       -->
+<!--             create a custom XML DTD for original markup of    -->
+<!--             journal literature, books, and related material,  -->
+<!--             or for archiving and transferring such material   -->
+<!--             between archives.                                 -->
+<!--                                                               -->
+<!--             This DTD is in the public domain. An organization -->
+<!--             that wishes to create its own DTD from the suite  -->
+<!--             may do so without permission from NLM.            -->
+<!--                                                               -->
+<!--             The suite has been set up to be extended using a  -->
+<!--             new DTD file and a new DTD-specific customization -->
+<!--             module to redefine the many Parameter Entities.   -->
+<!--             Do not modify the suite directly or redistribute  -->
+<!--             modified versions of the suite.                   -->
+<!--                                                               -->
+<!--             In the interest of maintaining consistency and    -->
+<!--             clarity for potential users, NLM requests:        -->
+<!--                                                               -->
+<!--             1. If you create a DTD from the Archiving and     -->
+<!--                Interchange DTD Suite and intend to stay       -->
+<!--                compatible with the suite, then please include -->
+<!--                the following statement as a comment in all of -->
+<!--                your DTD modules:                              -->
+<!--                   "Created from, and fully compatible with,   -->
+<!--                    the NISO Z39.96 Journal Article Tag Suite  -->
+<!--                    (JATS)."                                   -->
+<!--                                                               -->
+<!--             2. If you alter one or more modules of the suite, -->
+<!--                then please rename your version and all its    -->
+<!--                modules to avoid any confusion with the        -->
+<!--                original suite. Also, please include the       -->
+<!--                following statement as a comment in all your   -->
+<!--                DTD modules:                                   -->
+<!--                   "Based in part on, but not fully compatible -->
+<!--                    with, the NISO Z39.96 Journal Article Tag  -->
+<!--                    Suite."                                    -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             the DTD suite should be sent in email to:         -->
+<!--                 jats@ncbi.nlm.nih.gov                         -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             December 2002                                     -->
+<!--                                                               -->
+<!-- CREATED BY: Jeff Beck       (NCBI)                            -->
+<!--             Deborah Lapeyre (Mulberry Technologies, Inc.)     -->
+<!--             Bruce Rosenblum (Inera Inc.)                      -->
+<!--             B. Tommie Usdin (Mulberry Technologies, Inc.)     -->
+<!--                                                               -->
+<!--             NLM thanks the Harvard University Libraries, both -->
+<!--             for proposing that a draft archiving NLM DTD for  -->
+<!--             life sciences journals be extended to accommodate -->
+<!--             journals in all disciplines and for sponsoring    -->
+<!--             Bruce Rosenblum's collaboration with other DTD    -->
+<!--             authors in completing NLM Version 1.0. The        -->
+<!--             Andrew W. Mellon Foundation provided support for  -->
+<!--             these important contributions.                    -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION/CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+   
+     =============================================================
+     Version 0.4                       (DAL/BTU) v0.4 (2011-01-31)
+   
+     This Tag Set is in the process of becoming a NISO standard.
+     The version numbers are starting over from 0.4", as a Trial
+     Use Draft, to be made into "Version 1.0" when the Tag Suite 
+     becomes a NISO standard. Thus, NLM "Version 3.1 Draft" has 
+     been changed to NISO "Version 0.4". No model, attribute, or
+     parameter entity changes were made as part of this renaming.
+   
+     Details on NISO Tial Use Draft Version 0.4 are available at
+           http://jats.nlm.nih.gov/JATS-0.4.
+   
+  3. Updated the public identifier to "v0.4 20110131//EN", 
+     modified the formal public identifier to include "JATS (Z39.96)",
+     and the filename as delivered to include "JATS" and the
+     new version number "0".
+
+     =============================================================
+     Version 3.1                       (DAL/BTU) v3.1 (2010-04-30)
+
+     Version 3.1 is fully compatible with Version 3.0.
+
+     Details on version 3.1 are available at
+           http://jats.nlm.nih.gov/3.1.
+
+  2. Updated public identifier to "v3.1 20100830//EN"
+
+     =============================================================
+     Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)
+
+     Version 3.0 is the first non-backward-compatible release.
+     In addition to the usual incremental changes, some
+     elements and attributes have been renamed and/or remodeled
+     to better meet user needs and to increase tag set consistency.
+     All module change histories are available through the Tag Suite
+     web site at http://dtd.nlm.nih.gov.
+
+     Details on version 3.0 are available at
+           http://jats.nlm.nih.gov/3.0.
+
+  1. Updated public identifier to "v3.0 20080202//EN"              -->
+
+<!-- ============================================================= -->
+<!--                    SET UP FOR THE MathML MODULE               -->
+<!-- ============================================================= -->
+
+
+<!--                    MathML DTD                                 -->
+<!--                    The official version of the MathML 2.0 can
+                        be found at: http://www.w3.org/TR/MathML2/
+
+                        See also Mathematical Markup Language
+                        (MathML) Version 2.0
+
+                        A. Parsing MathML
+                        A.6 The MathML DTD
+            http://www.w3.org/TR/MathML2/appendixa.html#parsing-dtd
+
+                        A zip file with entity declarations is
+                        available from
+            http://www.w3.org/TR/MathML2/DTD-MathML-20010221.zip   -->
+
+
+<!-- ============================================================= -->
+<!--                    SET UP W3C XML SCHEMA                      -->
+<!-- ============================================================= -->
+
+
+<!--                    MAKE PREFIX EQUAL "xsi" (same as MathML)   -->
+<!ENTITY % Schema.prefix
+                        "xsi"                                        >
+
+<!--                    SET UP NAMESPACE FOR SCHEMA
+                           (same as MathML)                        -->
+<!ENTITY % Schema.xmlns "http://www.w3.org/2001/XMLSchema-instance"  >
+
+
+<!--                    OVER-RIDE MATHML DTD TO MAKE EXPLICIT NS   -->
+<!--                    MathML sets this up but then lets the
+                        attribute be a CDATA one, not the real
+                        namespace URI                              -->
+<!ENTITY % Schema.xmlns.attrib
+     "xmlns:%Schema.prefix;  CDATA          #FIXED '%Schema.xmlns;'" >
+
+
+<!-- ============================================================= -->
+<!--                    SET UP "mml" AS THE MATH PREFIX            -->
+<!-- ============================================================= -->
+
+
+<!--                    MAKE MATH PREFIX PARAMETER ENTITY HAPPEN   -->
+<!ENTITY % MATHML.prefixed "INCLUDE"                                 >
+
+
+<!--                    MAKE PREFIX EQUAL "mml"                    -->
+<!ENTITY % MATHML.prefix   "mml"                                     >
+
+
+<!--                    SET UP "pfx"                               -->
+<![%MATHML.prefixed;[
+<!ENTITY % MATHML.pfx      "%MATHML.prefix;:"                        >
+]]>
+
+
+<!--                    USE "pfx" TO SET THE MATH ELEMENT NAME     -->
+<!ENTITY % math.qname      "%MATHML.pfx;math"                        >
+
+
+
+
+<!-- ============================================================= -->
+<!--                    CALL THE MATHML ENTITIES                   -->
+<!-- ============================================================= -->
+
+
+<!--                    MATHML CHARACTER ENTITIES                  -->
+<!--                    Set the "INCLUDE" or "IGNORE" marked section
+                        switch for the MATHML 2.0 DTD. This switch
+                        determines whether the math processing in
+                        the -%mathml.dtd; module or the
+                        -%xmlspecchars.ent; module in this DTD Suite
+                        will invoke the sets of special characters
+                        that are defined AND INVOKED in the
+                        -%xmlspecchars.ent; module.
+                        A value of "IGNORE" turns off the second
+                        invocation from the MathML DTD.            -->
+<!ENTITY % mathml-charent.module
+                        "IGNORE"                                     >
+
+
+<!--                    MATHML-SPECIFIC CHARACTER ENTITIES         -->
+<!--                    Because the MATHML invocation is canceled
+                        using the parameter entity just defined,
+                        the two external entities below must be
+                        invoked from here, as neither XMLspecchars
+                        nor the MathML DTD will invoke them.       -->
+
+<!--                    New characters defined by MathML           -->
+%ent-mmlextra;
+
+
+<!--                    MathML aliases for characters defined above-->
+%ent-mmlalias;
+
+
+<!-- ============================================================= -->
+<!--                    RESTRICT CONTENT OF ANNOTATION             -->
+<!-- ============================================================= -->
+
+<!--                    MATHML ANNOTATION MODEL                    -->
+<!--                    The MathML DTD establishes the content of the
+                        <mml:annotation> element as ANY. This is
+                        unnecessarily broad, causing inconvenience for
+                        conversion. The model has been restricted to
+                        one or more paragraphs.                    -->
+<!ENTITY % Annotation-xml.content
+                        "(p+)"                                       >
+
+
+<!-- ============================================================= -->
+<!--                    MathML 2.0 INVOCATION                      -->
+<!-- ============================================================= -->
+
+%mathml.dtd;
+
+
+<!-- ================== End MATHML Setup Module ================== -->