sts 0.4.1 → 0.5.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (912) hide show
  1. checksums.yaml +4 -4
  2. data/Gemfile +0 -1
  3. data/README.adoc +173 -7
  4. data/lib/sts/iso_sts/annex_type.rb +20 -0
  5. data/lib/sts/iso_sts/app.rb +42 -0
  6. data/lib/sts/iso_sts/app_group.rb +32 -0
  7. data/lib/sts/iso_sts/array.rb +34 -0
  8. data/lib/sts/iso_sts/back.rb +26 -0
  9. data/lib/sts/iso_sts/body.rb +50 -0
  10. data/lib/sts/iso_sts/bold.rb +44 -0
  11. data/lib/sts/iso_sts/break.rb +11 -0
  12. data/lib/sts/iso_sts/caption.rb +32 -0
  13. data/lib/sts/iso_sts/col.rb +31 -0
  14. data/lib/sts/iso_sts/colgroup.rb +34 -0
  15. data/lib/sts/iso_sts/comm_ref.rb +16 -0
  16. data/lib/sts/iso_sts/copyright_holder.rb +20 -0
  17. data/lib/sts/iso_sts/copyright_statement.rb +24 -0
  18. data/lib/sts/iso_sts/copyright_year.rb +15 -0
  19. data/lib/sts/iso_sts/def.rb +28 -0
  20. data/lib/sts/iso_sts/def_item.rb +24 -0
  21. data/lib/sts/iso_sts/def_list.rb +42 -0
  22. data/lib/sts/iso_sts/disp_formula.rb +40 -0
  23. data/lib/sts/iso_sts/doc_ref.rb +16 -0
  24. data/lib/sts/iso_sts/document_identification.rb +23 -0
  25. data/lib/sts/iso_sts/edition.rb +16 -0
  26. data/lib/sts/iso_sts/ext_link.rb +33 -0
  27. data/lib/sts/iso_sts/fig.rb +56 -0
  28. data/lib/sts/iso_sts/fn.rb +32 -0
  29. data/lib/sts/iso_sts/fn_group.rb +30 -0
  30. data/lib/sts/iso_sts/front.rb +21 -0
  31. data/lib/sts/iso_sts/graphic.rb +40 -0
  32. data/lib/sts/iso_sts/inline_formula.rb +30 -0
  33. data/lib/sts/iso_sts/iso_meta.rb +53 -0
  34. data/lib/sts/iso_sts/italic.rb +44 -0
  35. data/lib/sts/iso_sts/label.rb +36 -0
  36. data/lib/sts/iso_sts/language.rb +20 -0
  37. data/lib/sts/iso_sts/list.rb +36 -0
  38. data/lib/sts/iso_sts/list_item.rb +32 -0
  39. data/lib/sts/iso_sts/mathml2/math.rb +67 -0
  40. data/lib/sts/iso_sts/mathml2.rb +9 -0
  41. data/lib/sts/iso_sts/mixed_citation.rb +54 -0
  42. data/lib/sts/iso_sts/nat_meta.rb +53 -0
  43. data/lib/sts/iso_sts/non_normative_example.rb +26 -0
  44. data/lib/sts/iso_sts/non_normative_note.rb +28 -0
  45. data/lib/sts/iso_sts/page_count.rb +15 -0
  46. data/lib/sts/iso_sts/paragraph.rb +76 -0
  47. data/lib/sts/iso_sts/permissions.rb +23 -0
  48. data/lib/sts/iso_sts/preformat.rb +42 -0
  49. data/lib/sts/iso_sts/ref.rb +34 -0
  50. data/lib/sts/iso_sts/ref_list.rb +34 -0
  51. data/lib/sts/iso_sts/reg_meta.rb +57 -0
  52. data/lib/sts/iso_sts/release_date.rb +16 -0
  53. data/lib/sts/iso_sts/sec.rb +72 -0
  54. data/lib/sts/iso_sts/secretariat.rb +16 -0
  55. data/lib/sts/iso_sts/standard.rb +27 -0
  56. data/lib/sts/iso_sts/standard_cross_reference.rb +22 -0
  57. data/lib/sts/iso_sts/standard_identification.rb +31 -0
  58. data/lib/sts/iso_sts/std.rb +41 -0
  59. data/lib/sts/iso_sts/std_ref.rb +35 -0
  60. data/lib/sts/iso_sts/styled_content.rb +62 -0
  61. data/lib/sts/iso_sts/sub.rb +16 -0
  62. data/lib/sts/iso_sts/sup.rb +16 -0
  63. data/lib/sts/iso_sts/table.rb +46 -0
  64. data/lib/sts/iso_sts/table_wrap.rb +50 -0
  65. data/lib/sts/iso_sts/table_wrap_foot.rb +29 -0
  66. data/lib/sts/iso_sts/tbody.rb +30 -0
  67. data/lib/sts/iso_sts/td.rb +74 -0
  68. data/lib/sts/iso_sts/term.rb +46 -0
  69. data/lib/sts/iso_sts/term_sec.rb +48 -0
  70. data/lib/sts/iso_sts/tfoot.rb +30 -0
  71. data/lib/sts/iso_sts/th.rb +74 -0
  72. data/lib/sts/iso_sts/thead.rb +30 -0
  73. data/lib/sts/iso_sts/title.rb +30 -0
  74. data/lib/sts/iso_sts/title_compl.rb +22 -0
  75. data/lib/sts/iso_sts/title_full.rb +22 -0
  76. data/lib/sts/iso_sts/title_intro.rb +22 -0
  77. data/lib/sts/iso_sts/title_main.rb +22 -0
  78. data/lib/sts/iso_sts/title_wrap.rb +26 -0
  79. data/lib/sts/iso_sts/tr.rb +32 -0
  80. data/lib/sts/iso_sts/xref.rb +41 -0
  81. data/lib/sts/iso_sts.rb +103 -0
  82. data/lib/sts/tbx_iso_tml/colgroup.rb +30 -0
  83. data/lib/sts/tbx_iso_tml/table.rb +18 -0
  84. data/lib/sts/tbx_iso_tml/table_wrap.rb +8 -0
  85. data/lib/sts/tbx_iso_tml/table_wrap_foot.rb +12 -0
  86. data/lib/sts/tbx_iso_tml/td.rb +11 -1
  87. data/lib/sts/tbx_iso_tml/tfoot.rb +26 -0
  88. data/lib/sts/tbx_iso_tml/th.rb +12 -0
  89. data/lib/sts/tbx_iso_tml.rb +2 -0
  90. data/lib/sts/version.rb +1 -1
  91. data/lib/sts.rb +1 -0
  92. data/reference-docs/isosts-example/feature_doc.xml +502 -0
  93. data/reference-docs/isosts-v1/ISOSTS-classes.ent +277 -0
  94. data/reference-docs/isosts-v1/ISOSTS-iso-metadata.ent +765 -0
  95. data/reference-docs/isosts-v1/ISOSTS-mixes.ent +199 -0
  96. data/reference-docs/isosts-v1/ISOSTS-models.ent +869 -0
  97. data/reference-docs/isosts-v1/ISOSTS-modules.ent +207 -0
  98. data/reference-docs/isosts-v1/ISOSTS-nat-metadata.ent +169 -0
  99. data/reference-docs/isosts-v1/ISOSTS-reg-metadata.ent +156 -0
  100. data/reference-docs/isosts-v1/ISOSTS-tbx-namespace.ent +454 -0
  101. data/reference-docs/isosts-v1/ISOSTS-tbx-setup.ent +142 -0
  102. data/reference-docs/isosts-v1/ISOSTS.dtd +745 -0
  103. data/reference-docs/isosts-v1/JATS-XHTMLtablesetup0.ent +313 -0
  104. data/reference-docs/isosts-v1/JATS-articlemeta0.ent +1734 -0
  105. data/reference-docs/isosts-v1/JATS-backmatter0.ent +310 -0
  106. data/reference-docs/isosts-v1/JATS-chars0.ent +446 -0
  107. data/reference-docs/isosts-v1/JATS-common0.ent +3207 -0
  108. data/reference-docs/isosts-v1/JATS-default-classes0.ent +881 -0
  109. data/reference-docs/isosts-v1/JATS-default-mixes0.ent +317 -0
  110. data/reference-docs/isosts-v1/JATS-display0.ent +839 -0
  111. data/reference-docs/isosts-v1/JATS-format0.ent +544 -0
  112. data/reference-docs/isosts-v1/JATS-funding0.ent +440 -0
  113. data/reference-docs/isosts-v1/JATS-journalmeta0.ent +352 -0
  114. data/reference-docs/isosts-v1/JATS-journalpub-oasis-custom-classes0.ent +220 -0
  115. data/reference-docs/isosts-v1/JATS-journalpub-oasis-custom-modules0.ent +154 -0
  116. data/reference-docs/isosts-v1/JATS-journalpubcustom-classes0.ent +194 -0
  117. data/reference-docs/isosts-v1/JATS-journalpubcustom-mixes0.ent +148 -0
  118. data/reference-docs/isosts-v1/JATS-journalpubcustom-models0.ent +674 -0
  119. data/reference-docs/isosts-v1/JATS-journalpubcustom-modules0.ent +152 -0
  120. data/reference-docs/isosts-v1/JATS-journalpublishing-oasis0.dtd +721 -0
  121. data/reference-docs/isosts-v1/JATS-journalpublishing0.dtd +709 -0
  122. data/reference-docs/isosts-v1/JATS-link0.ent +341 -0
  123. data/reference-docs/isosts-v1/JATS-list0.ent +393 -0
  124. data/reference-docs/isosts-v1/JATS-math0.ent +307 -0
  125. data/reference-docs/isosts-v1/JATS-mathmlsetup0.ent +266 -0
  126. data/reference-docs/isosts-v1/JATS-modules0.ent +443 -0
  127. data/reference-docs/isosts-v1/JATS-nlmcitation0.ent +173 -0
  128. data/reference-docs/isosts-v1/JATS-notat0.ent +193 -0
  129. data/reference-docs/isosts-v1/JATS-oasis-tablesetup0.ent +290 -0
  130. data/reference-docs/isosts-v1/JATS-para0.ent +388 -0
  131. data/reference-docs/isosts-v1/JATS-phrase0.ent +415 -0
  132. data/reference-docs/isosts-v1/JATS-references0.ent +888 -0
  133. data/reference-docs/isosts-v1/JATS-related-object0.ent +159 -0
  134. data/reference-docs/isosts-v1/JATS-section0.ent +225 -0
  135. data/reference-docs/isosts-v1/JATS-xmlspecchars0.ent +312 -0
  136. data/reference-docs/isosts-v1/Smallsamples/Samp1.xml +68 -0
  137. data/reference-docs/isosts-v1/Smallsamples/Sample2.xml +41 -0
  138. data/reference-docs/isosts-v1/Smallsamples/meta-mixes_ok_1.xml +85 -0
  139. data/reference-docs/isosts-v1/Smallsamples/meta-mixes_ok_2.xml +109 -0
  140. data/reference-docs/isosts-v1/Smallsamples/nat-meta.xml +63 -0
  141. data/reference-docs/isosts-v1/Smallsamples/para-mixes_ok_1.xml +37 -0
  142. data/reference-docs/isosts-v1/Smallsamples/reg-meta.xml +65 -0
  143. data/reference-docs/isosts-v1/Smallsamples/tbx-highlight-elements.xml +54 -0
  144. data/reference-docs/isosts-v1/catalog-iso.xml +514 -0
  145. data/reference-docs/isosts-v1/catalog-jats-v0.xml +642 -0
  146. data/reference-docs/isosts-v1/catalog-test-v0.xml +642 -0
  147. data/reference-docs/isosts-v1/catalog.ent +191 -0
  148. data/reference-docs/isosts-v1/doc/ISOSTS-style.css +456 -0
  149. data/reference-docs/isosts-v1/doc/changes.html +146 -0
  150. data/reference-docs/isosts-v1/doc/el_reg-meta.html +276 -0
  151. data/reference-docs/isosts-v1/doc/el_release-version-id.html +48 -0
  152. data/reference-docs/isosts-v1/doc/graphics/3angle-down.gif +0 -0
  153. data/reference-docs/isosts-v1/doc/graphics/3angle-right.gif +0 -0
  154. data/reference-docs/isosts-v1/doc/graphics/ack.png +0 -0
  155. data/reference-docs/isosts-v1/doc/graphics/app-group.png +0 -0
  156. data/reference-docs/isosts-v1/doc/graphics/app.png +0 -0
  157. data/reference-docs/isosts-v1/doc/graphics/array.png +0 -0
  158. data/reference-docs/isosts-v1/doc/graphics/back.png +0 -0
  159. data/reference-docs/isosts-v1/doc/graphics/bio.png +0 -0
  160. data/reference-docs/isosts-v1/doc/graphics/block.gif +0 -0
  161. data/reference-docs/isosts-v1/doc/graphics/body.png +0 -0
  162. data/reference-docs/isosts-v1/doc/graphics/boxed-text.png +0 -0
  163. data/reference-docs/isosts-v1/doc/graphics/caption.png +0 -0
  164. data/reference-docs/isosts-v1/doc/graphics/cen-meta.png +0 -0
  165. data/reference-docs/isosts-v1/doc/graphics/chem-struct-wrap.png +0 -0
  166. data/reference-docs/isosts-v1/doc/graphics/custom-meta-group.png +0 -0
  167. data/reference-docs/isosts-v1/doc/graphics/def-list.png +0 -0
  168. data/reference-docs/isosts-v1/doc/graphics/disp-formula-group.png +0 -0
  169. data/reference-docs/isosts-v1/doc/graphics/disp-quote.png +0 -0
  170. data/reference-docs/isosts-v1/doc/graphics/doc-ident.png +0 -0
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  172. data/reference-docs/isosts-v1/doc/graphics/fig.png +0 -0
  173. data/reference-docs/isosts-v1/doc/graphics/fn-group.png +0 -0
  174. data/reference-docs/isosts-v1/doc/graphics/fn.png +0 -0
  175. data/reference-docs/isosts-v1/doc/graphics/front.png +0 -0
  176. data/reference-docs/isosts-v1/doc/graphics/glossary.png +0 -0
  177. data/reference-docs/isosts-v1/doc/graphics/identity-matrix.gif +0 -0
  178. data/reference-docs/isosts-v1/doc/graphics/integral.gif +0 -0
  179. data/reference-docs/isosts-v1/doc/graphics/iso-meta.png +0 -0
  180. data/reference-docs/isosts-v1/doc/graphics/list.png +0 -0
  181. data/reference-docs/isosts-v1/doc/graphics/nat-meta.png +0 -0
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1
+ <!-- ============================================================= -->
2
+ <!-- MODULE: Journal Publishing DTD -->
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+ <!-- VERSION: NISO 0.4 -->
4
+ <!-- DATE: January 2011 -->
5
+ <!-- -->
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+ <!-- ============================================================= -->
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+
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+ <!-- ============================================================= -->
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+ <!-- PUBLIC DOCUMENT TYPE DEFINITION -->
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+ <!-- TYPICAL INVOCATION -->
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+ <!--
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+ "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD (OASIS Tables) v0.4 20110131//EN"
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+ Delivered as file "JATS-journalpublishing-oasis0.dtd"
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+ Available at:
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+ http://jats.nlm.nih.gov/publishing/0.4/JATS-journalpublishing-oasis0.dtd
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+ -->
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+ <!-- ============================================================= -->
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+
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+
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+ <!-- ============================================================= -->
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+ <!-- SYSTEM: Journal Publishing DTD of the -->
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+ <!-- Archiving and Interchange DTD Suite -->
23
+ <!-- -->
24
+ <!-- PURPOSE: DTD for creation of new journal articles -->
25
+ <!-- -->
26
+ <!-- This subset of the Journal Archiving and -->
27
+ <!-- Interchange DTD is optimized for the authoring -->
28
+ <!-- (or initial XML tagging) of journal articles and -->
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+ <!-- some non-article material such as product and -->
30
+ <!-- book reviews. It describes both the metadata for -->
31
+ <!-- a journal article and the full content of the -->
32
+ <!-- article. -->
33
+ <!-- This DTD was constructed using the modules in the -->
34
+ <!-- Archiving and Interchange DTD Suite. -->
35
+ <!-- -->
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+ <!-- CONTAINS: 1) Declare and invoke the Publishing (Blue) DTD- -->
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+ <!-- specific module of modules, that names any -->
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+ <!-- modules created expressly for this DTD. -->
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+ <!-- (%journalpubcustom-modules.ent;) -->
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+ <!-- 2) Declare and invoke the DTD Suite module of -->
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+ <!-- modules (%modules.ent;), the Archiving and -->
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+ <!-- Interchange Suite module that names all the -->
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+ <!-- Suite modules this DTD might invoke -->
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+ <!-- 3) Invoke DTD-specific classes over-ride module -->
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+ <!-- (%journalpub-classes.ent;) -->
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+ <!-- 4) Invoke Suite default classes -->
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+ <!-- (%default-classes.ent;) -->
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+ <!-- 5) Invoke DTD-specific mixes over-ride module -->
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+ <!-- (%journalpubcustom-mixes.ent;) -->
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+ <!-- 6) Invoke Suite default mixes -->
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+ <!-- (%default-mixes.ent;) -->
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+ <!-- 7) Invoke DTD-specific content model over-ride -->
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+ <!-- module (%journalpubcustom-models.ent;) -->
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+ <!-- 8) Invoke the Common Element Module (from Suite) -->
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+ <!-- 9) Invoke all the Class Modules (from Suite) as -->
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+ <!-- well as any DTD-specific element modules -->
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+ <!-- 10) Parameter Entities for attribute values used -->
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+ <!-- in this module (DTD-specific definitions) -->
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+ <!-- 11) Define document element (Article <article>) -->
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+ <!-- 12) Define Front Matter <front> -->
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+ <!-- 13) Define Body Matter <body> -->
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+ <!-- 14) Define Back Matter <back> -->
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+ <!-- -->
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+ <!-- TAG SET SPONSOR -->
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+ <!-- Digital Archive of Journal Articles -->
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+ <!-- National Center for Biotechnology Information -->
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+ <!-- (NCBI) -->
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+ <!-- National Library of Medicine (NLM) -->
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+ <!-- -->
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+ <!-- CREATED FOR: -->
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+ <!-- Digital archives and publishers who wish to -->
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+ <!-- create a custom XML DTD for original markup of -->
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+ <!-- journal literature, books, and related material, -->
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+ <!-- or for archiving and transferring such material -->
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+ <!-- between archives. -->
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+ <!-- -->
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+ <!-- This DTD is in the public domain. An organization -->
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+ <!-- that wishes to create its own DTD from the suite -->
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+ <!-- may do so without permission from NLM. -->
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+ <!-- -->
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+ <!-- The suite has been set up to be extended using a -->
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+ <!-- new DTD file and a new DTD-specific customization -->
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+ <!-- module to redefine the many Parameter Entities. -->
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+ <!-- Do not modify the suite directly or redistribute -->
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+ <!-- modified versions of the suite. -->
86
+ <!-- -->
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+ <!-- In the interest of maintaining consistency and -->
88
+ <!-- clarity for potential users, NLM requests: -->
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+ <!-- -->
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+ <!-- 1. If you create a DTD from the Archiving and -->
91
+ <!-- Interchange DTD Suite and intend to stay -->
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+ <!-- compatible with the suite, then please include -->
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+ <!-- the following statement as a comment in all of -->
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+ <!-- your DTD modules: -->
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+ <!-- "Created from, and fully compatible with, -->
96
+ <!-- the NISO Z39.96 Journal Article Tag Suite -->
97
+ <!-- (JATS)." -->
98
+ <!-- -->
99
+ <!-- 2. If you alter one or more modules of the suite, -->
100
+ <!-- then please rename your version and all its -->
101
+ <!-- modules to avoid any confusion with the -->
102
+ <!-- original suite. Also, please include the -->
103
+ <!-- following statement as a comment in all your -->
104
+ <!-- DTD modules: -->
105
+ <!-- "Based in part on, but not fully compatible -->
106
+ <!-- with, the NISO Z39.96 Journal Article Tag -->
107
+ <!-- Suite." -->
108
+ <!-- -->
109
+ <!-- ORIGINAL CREATION DATE: -->
110
+ <!-- February 2003 -->
111
+ <!-- -->
112
+ <!-- CREATED BY: Jeff Beck (NCBI) -->
113
+ <!-- B. Tommie Usdin (Mulberry Technologies, Inc.) -->
114
+ <!-- -->
115
+ <!-- The Journal Publishing DTD is built from the -->
116
+ <!-- Archiving and Interchange DTD Suite. -->
117
+ <!-- -->
118
+ <!-- Suggestions for refinements and enhancements to -->
119
+ <!-- this DTD should be sent in email to: -->
120
+ <!-- jats@ncbi.nlm.nih.gov -->
121
+ <!-- ============================================================= -->
122
+
123
+
124
+ <!-- ============================================================= -->
125
+ <!-- DTD VERSION/CHANGE HISTORY -->
126
+ <!-- ============================================================= -->
127
+ <!--
128
+
129
+ Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
130
+
131
+ =============================================================
132
+ Version 0.4 (DAL/BTU) v0.4 (2011-01-31)
133
+
134
+ This Tag Set is in the process of becoming a NISO standard.
135
+ The version numbers are starting over from 0.4", as a Trial
136
+ Use Draft, to be made into "Version 1.0" when the Tag Suite
137
+ becomes a NISO standard. Thus, NLM "Version 3.1 Draft" has
138
+ been changed to NISO "Version 0.4". No model, attribute, or
139
+ parameter entity changes were made as part of this renaming.
140
+
141
+ Details on NISO Tial Use Draft Version 0.4 are available at
142
+ http://jats.nlm.nih.gov/JATS-0.4.
143
+
144
+ 11. Updated the DTD-version attribute to "0.4"
145
+
146
+ 10. Updated the public identifier to "v0.4 20110131//EN",
147
+ modified the formal public identifier to include "JATS (Z39.96)",
148
+ and the filename as delivered to include "JATS" and the
149
+ new version number "0".n Also included the phrase
150
+ (OASIS Tables)in the formal name.
151
+
152
+ =============================================================
153
+ Version 3.1 (DAL/BTU) v3.1 (2010-04-30)
154
+
155
+ Version 3.1 is fully compatible with Version 3.0.
156
+
157
+ Details on version 3.1 are available at
158
+ http://jats.nlm.nih.gov/3.1.
159
+
160
+ 9. OASIS TABLES - Replaced the XHTML table model with the
161
+ OASIS CALS exchange Table Model
162
+
163
+ 8. BODY ATTRIBUTES - Added attribute list and new PE %body-atts;
164
+ to the model of <body>. The only current attribute is
165
+ @specific-use, which indicates, for example, not a real
166
+ tagged XML body, but a 'bag of words" for indexing purposes.
167
+
168
+ 7. I18N - Changed the default for @xml:lang from "en" to
169
+ #IMPLIED, so that the @xml:lang would inherit properly and
170
+ not need to be over-ridden in
171
+ - <sub-article> through %sub-article-atts;
172
+ - <response> through %response-atts;
173
+
174
+ 6. XML:LANG - Added @xml:lang to the following elements:
175
+ Added to facilitate multiple languages.
176
+ - article
177
+
178
+ 5. AFFILIATION ALTERNATIVES - Added the element <aff-alternatives>
179
+ to <front-stub> through %front-stub-model;. This element
180
+ will hold multiple <aff>s that are a representation of a
181
+ single affiliation, for example, the name of an institution
182
+ in two languages or two scripts.
183
+
184
+ 4. LANGUAGE CODES - Codes for languages as well as variants,
185
+ transliterations, regions, scripts, and combinations
186
+ such as "Jpan"(Han + Hiragana + Katakana). These values should be
187
+ taken from RFC 5646/W3C/IANA Subtag Registry recommendations
188
+ and can be found online at:
189
+ http://www.iana.org/assignments/language-subtag-registry
190
+
191
+ 3. Updated public identifier to "v3.1 20100830//EN"
192
+
193
+ =============================================================
194
+ Version 3.0 (DAL/BTU) v3.0 (2007-10-31)
195
+
196
+ Version 3.0 is the first non-backward-compatible release.
197
+ In addition to the usual incremental changes, some
198
+ elements and attributes have been renamed and/or remodeled
199
+ to better meet user needs and to increase tag set consistency.
200
+ All module change histories are available through the Tag Suite
201
+ web site at http://dtd.nlm.nih.gov.
202
+
203
+ Details on version 3.0 are available at
204
+ http://jats.nlm.nih.gov/3.0.
205
+
206
+ 2. Changed default @xml:lang from "EN" from "en" to match latest
207
+ RFC 4646/W3C/IANA Subtag Registry recommendations
208
+
209
+ 1. Updated public identifier to "v3.1 20100830//EN" -->
210
+
211
+
212
+ <!-- ============================================================= -->
213
+ <!-- DESIGN CONSIDERATIONS -->
214
+ <!-- ============================================================= -->
215
+
216
+
217
+ <!-- MODULAR DTD LIBRARY
218
+ A set of journal archiving and interchange
219
+ DTD modules was written as the basis for
220
+ publishing, interchange, and repository
221
+ DTDs, with the intention that DTDs for
222
+ specific purposes, such as this Publishing
223
+ DTD, would be developed based on them.
224
+
225
+ This publishing DTD has been optimized for
226
+ the creation of new journal articles. This
227
+ means that it is far smaller (fewer elements,
228
+ and fewer choices in many contexts) than was
229
+ the interchange DTD. Where in the interchange
230
+ DTD there may have been several ways to
231
+ express the same information, only one is
232
+ provided for authoring. It was not the
233
+ intention to limit the expressive power
234
+ licensed by the DTD, but rather to limit the
235
+ meaningless choices needed in a full
236
+ archiving and interchange DTD that make
237
+ conversion from a wide variety of formats as
238
+ easy as possible.
239
+
240
+ This Publishing DTD has been developed from
241
+ the Archiving and Interchange DTD Suite
242
+ modules, in the approved manner, making
243
+ changes to the declarations in those modules
244
+ by overriding Parameter Entity defined in
245
+ the over-rise (customization) modules:
246
+ %journalpubcustom-classes.ent;
247
+ %journalpubcustom-mixes.ent;
248
+ %journalpubcustom-models.ent;
249
+ which are all declared in the module:
250
+ %journalpubcustom-modules.ent;
251
+ Additional Publishing-DTD-Specific material
252
+ is defined in the module(s):
253
+ %nlmcitation.ent;
254
+ No changes to any of the original Archiving
255
+ and Interchange Suite modules are required
256
+ in order to use this DTD. -->
257
+
258
+
259
+ <!-- ============================================================= -->
260
+ <!-- MODULES OF MODULES INVOKED -->
261
+ <!-- ============================================================= -->
262
+
263
+
264
+ <!-- MODULE TO NAME DTD-SPECIFIC MODULES -->
265
+ <!-- Names all DTD-specific external modules -->
266
+ <!ENTITY % journalpub-oasis-custom-modules.ent
267
+ PUBLIC
268
+ "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD-Specific Modules (OASIS Tables) v0.4 20110131//EN"
269
+ "JATS-journalpub-oasis-custom-modules0.ent" >
270
+ %journalpub-oasis-custom-modules.ent;
271
+
272
+
273
+ <!-- MODULE TO NAME THE MODULES -->
274
+ <!-- Declares all the external modules that are
275
+ part of the modular Journal Archiving and
276
+ Interchange DTD Suite library. Thus it does
277
+ NOT declare itself; the DTD-specific
278
+ module-of-modules; or the DTD-specific class,
279
+ mix, or model over-ride modules. Those are
280
+ declared in the DTD-specific module of modules.
281
+ Since this module declares but does not
282
+ invoke modules, this DTD invokes any modules
283
+ it uses by referencing the external
284
+ Parameter Entities defined in the Module of
285
+ Modules. To include a set of elements (such
286
+ as all the lists or the MathML elements) this
287
+ module defines the external Parameter Entity
288
+ for the module(s) that contains the MathML
289
+ declarations and the DTD references that
290
+ entity. -->
291
+ <!ENTITY % modules.ent PUBLIC
292
+ "-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Module of Modules v0.4 20110131//EN"
293
+ "JATS-modules0.ent" >
294
+ %modules.ent;
295
+
296
+
297
+ <!-- ============================================================= -->
298
+ <!-- CUSTOMIZATION MODULES INVOKED -->
299
+ <!-- Note: These modules must be called after -->
300
+ <!-- all Module of Modules but before any other -->
301
+ <!-- modules. Unlike any other grouping, order -->
302
+ <!-- of these modules matters. -->
303
+ <!-- ============================================================= -->
304
+
305
+
306
+ <!-- DTD-SPECIFIC CLASS CUSTOMIZATIONS MODULE -->
307
+ <!-- Names the module that holds the DTD-specific
308
+ class definitions for the Journal Publishing
309
+ DTD that will over-ride classes in the Suite.
310
+ (Defined in %journalpubcustom-modules.ent;)-->
311
+ %journalpub-oasis-custom-classes.ent;
312
+
313
+
314
+ <!-- DEFAULT ELEMENT CLASSES MODULE -->
315
+ <!-- Names the module that holds the standard
316
+ class definitions for the Journal Archiving
317
+ and Interchange DTD Suite. -->
318
+ %default-classes.ent;
319
+
320
+
321
+ <!-- DTD-SPECIFIC MIX CUSTOMIZATIONS MODULE -->
322
+ <!-- Set up the Parameter Entities and element
323
+ class definitions that will be used to
324
+ over-ride some element mixes in this DTD.
325
+ (Defined in %journalpubcustom-modules.ent;)-->
326
+ %journalpubcustom-mixes.ent;
327
+
328
+
329
+ <!-- DEFAULT MIX CUSTOMIZATIONS MODULE -->
330
+ <!-- Names the module that holds the standard
331
+ mix definitions for the Journal Archiving
332
+ and Interchange DTD Suite. -->
333
+ %default-mixes.ent;
334
+
335
+
336
+ <!-- DTD-SPECIFIC MODELS/ATTRIBUTES CUSTOMIZATIONS
337
+ MODULE -->
338
+ <!-- Names the module that holds the over-rides
339
+ of content models, attribute lists, elements
340
+ lists to be used in content models, and
341
+ attribute values. These are DTD-specific.
342
+ (Defined in %journalpubcustom-modules.ent;)-->
343
+ %journalpubcustom-models.ent;
344
+
345
+
346
+
347
+ <!-- ============================================================= -->
348
+ <!-- COMMON (SHARED) ELEMENTS MODULE INVOKED -->
349
+ <!-- ============================================================= -->
350
+
351
+
352
+ <!-- COMMON (SHARED) DECLARATIONS -->
353
+ <!-- Declarations for elements, attributes,
354
+ entities, and Notations that are shared by
355
+ more than one class module. Note: Must be
356
+ called before any of the class modules. -->
357
+
358
+ %common.ent;
359
+
360
+
361
+ <!-- ============================================================= -->
362
+ <!-- JOURNAL ARTICLE CLASS ELEMENTS (alpha) -->
363
+ <!-- ============================================================= -->
364
+
365
+
366
+ <!-- ARTICLE METADATA ELEMENTS -->
367
+ %articlemeta.ent;
368
+
369
+
370
+ <!-- BACK MATTER ELEMENTS -->
371
+ %backmatter.ent;
372
+
373
+
374
+ <!-- DISPLAY (GRAPHICAL) ELEMENTS -->
375
+ %display.ent;
376
+
377
+
378
+ <!-- FORMATTING ELEMENT CLASSES -->
379
+ <!-- Elements that change rendition/display. -->
380
+ %format.ent;
381
+
382
+
383
+ <!-- FUNDING ELEMENTS -->
384
+ <!-- Elements that describe the sponsorship or
385
+ open access -->
386
+ %funding.ent;
387
+
388
+
389
+ <!-- JOURNAL METADATA ELEMENTS -->
390
+ %journalmeta.ent;
391
+
392
+
393
+ <!-- LINK CLASS ELEMENTS -->
394
+ %link.ent;
395
+
396
+
397
+ <!-- LIST CLASS ELEMENTS -->
398
+ %list.ent;
399
+
400
+
401
+ <!-- MATH ELEMENTS -->
402
+ %math.ent;
403
+
404
+
405
+ <!-- NLM CITATION ELEMENT -->
406
+ %nlmcitation.ent;
407
+
408
+
409
+ <!-- PARAGRAPH-LEVEL ELEMENTS -->
410
+ %para.ent;
411
+
412
+
413
+ <!-- PHRASE-LEVEL ELEMENTS -->
414
+ %phrase.ent;
415
+
416
+
417
+ <!-- BIBLIOGRAPHIC REFERENCE (CITATION)
418
+ CLASS ELEMENTS -->
419
+ %references.ent;
420
+
421
+
422
+ <!-- RELATED OBJECT ELEMENT -->
423
+ <!-- Defines the <related-object> element to
424
+ describe a related object such as a
425
+ related book or a dataset. -->
426
+ %related-object.ent;
427
+
428
+
429
+ <!-- SECTION ELEMENTS -->
430
+ %section.ent;
431
+
432
+
433
+ <!-- ============================================================= -->
434
+ <!-- THE REST OF THE EXTERNAL MODULES INVOKED -->
435
+ <!-- ============================================================= -->
436
+
437
+
438
+ <!-- MATHML SETUP MODULE -->
439
+ <!-- Invoke the MathML modules -->
440
+ %mathmlsetup.ent;
441
+
442
+
443
+
444
+ <!-- XHTML TABLE SETUP MODULE -->
445
+ <!-- Set up the necessary Parameter Entity values
446
+ and then invoke XHTML (HTML 4.0) table
447
+ module -->
448
+ %XHTMLtablesetup.ent;
449
+
450
+
451
+ <!-- OASIS EXCHANGE (CALS) TABLE SETUP MODULE -->
452
+ <!-- Set up the necessary Parameter Entity values
453
+ and then invokes OASIS Exchange table
454
+ module -->
455
+ %oasis-tablesetup.ent;
456
+
457
+
458
+ <!-- SPECIAL CHARACTERS DECLARATIONS -->
459
+ <!-- Standard XML special character entities
460
+ used in this DTD -->
461
+ %xmlspecchars.ent;
462
+
463
+
464
+ <!-- CUSTOM SPECIAL CHARACTERS DECLARATIONS -->
465
+ <!-- Custom special character entities created
466
+ specifically for use in this DTD Suite -->
467
+ %chars.ent;
468
+
469
+
470
+ <!-- NOTATION DECLARATIONS MODULE -->
471
+ %notat.ent;
472
+
473
+
474
+ <!-- ============================================================= -->
475
+ <!-- PARAMETER ENTITIES FOR ATTRIBUTE LISTS -->
476
+ <!-- ============================================================= -->
477
+
478
+
479
+ <!-- DTD VERSION -->
480
+ <!-- What version of this DTD was used to make
481
+ the document instance under consideration.
482
+ Note that this is a fixed value that should
483
+ change every time the DTD changes versions or
484
+ revisions. -->
485
+ <!ENTITY % dtd-version
486
+ "dtd-version
487
+ CDATA #FIXED '0.4'" >
488
+
489
+
490
+
491
+ <!-- ARTICLE ATTRIBUTES -->
492
+ <!-- Attributes for the top-level element
493
+ <article> -->
494
+ <!ENTITY % article-atts
495
+ "article-type
496
+ CDATA #IMPLIED
497
+ %dtd-version;
498
+ specific-use
499
+ CDATA #IMPLIED
500
+ xml:lang NMTOKEN 'en'
501
+ %XLINK.xmlns.attrib;
502
+ %MATHML.xmlns.attrib;
503
+ %Schema.xmlns.attrib;
504
+ %oasis.xmlns.attrib;" >
505
+
506
+
507
+ <!-- BODY ATTRIBUTES -->
508
+ <!-- Attributes for the <body> element -->
509
+ <!ENTITY % body-atts
510
+ "specific-use
511
+ CDATA #IMPLIED" >
512
+
513
+
514
+ <!-- SUB-ARTICLE ATTRIBUTES -->
515
+ <!-- Attributes for the <sub-article> element -->
516
+ <!ENTITY % sub-article-atts
517
+ "article-type
518
+ CDATA #IMPLIED
519
+ id ID #IMPLIED
520
+ specific-use
521
+ CDATA #IMPLIED
522
+ xml:lang NMTOKEN #IMPLIED" >
523
+
524
+
525
+ <!-- RESPONSE ATTRIBUTES -->
526
+ <!-- Attributes for the <response> element -->
527
+ <!ENTITY % response-atts
528
+ "response-type
529
+ CDATA #IMPLIED
530
+ id ID #IMPLIED
531
+ specific-use
532
+ CDATA #IMPLIED
533
+ xml:lang NMTOKEN #IMPLIED" >
534
+
535
+
536
+ <!-- ============================================================= -->
537
+ <!-- JOURNAL ARTICLE ELEMENTS -->
538
+ <!-- ============================================================= -->
539
+
540
+
541
+ <!-- ARTICLE MODEL (LIMITED) -->
542
+ <!-- Article-like model used for, for example,
543
+ a short sub-article such as a news brief that
544
+ is contained in side a journal article.
545
+ -->
546
+ <!ENTITY % article-short-model
547
+ "((front | front-stub), body?, back?,
548
+ floats-group?)" >
549
+
550
+
551
+ <!-- ARTICLE MODEL WITH SUBARTICLE OR RESPONSE -->
552
+ <!-- Typical journal article model, which may
553
+ contain extended components, such as
554
+ sub-articles or responses, but which usually
555
+ contains neither.
556
+ -->
557
+ <!ENTITY % article-full-model
558
+ "(front, body?, back?, floats-group?,
559
+ (sub-article* | response*) )" >
560
+
561
+
562
+ <!-- ARTICLE -->
563
+ <!-- The complete content of a journal article.
564
+ Details at:
565
+ http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=article
566
+ -->
567
+ <!ELEMENT article %article-full-model; >
568
+ <!ATTLIST article
569
+ %article-atts; >
570
+
571
+
572
+ <!-- ============================================================= -->
573
+ <!-- FRONT MATTER ELEMENTS -->
574
+ <!-- ============================================================= -->
575
+
576
+
577
+ <!-- FRONT MATTER MODEL -->
578
+ <!-- Model for the <front> matter (the header
579
+ metadata) of a journal article) -->
580
+ <!ENTITY % front-model "(journal-meta, article-meta,
581
+ (%front-back.class;)? )" >
582
+
583
+
584
+ <!-- FRONT MATTER -->
585
+ <!-- The metadata concerning an article, such as
586
+ the name and issue of the journal in which it
587
+ appears and the name and author(s) of the
588
+ article.
589
+ Details at:
590
+ http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=front
591
+ -->
592
+ <!ELEMENT front %front-model; >
593
+
594
+
595
+ <!-- ============================================================= -->
596
+ <!-- BODY ELEMENTS -->
597
+ <!-- ============================================================= -->
598
+
599
+
600
+ <!-- BODY MODEL -->
601
+ <!-- Content model for the Body (main textual
602
+ content) of a journal article. -->
603
+ <!ENTITY % body-model "((%para-level;)*, (%sec-level;)*,
604
+ sig-block?)" >
605
+
606
+
607
+ <!-- BODY OF THE ARTICLE -->
608
+ <!-- The main textual portion of the article that
609
+ conveys the content.
610
+ Details at:
611
+ http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=body
612
+ -->
613
+ <!ELEMENT body %body-model; >
614
+ <!ATTLIST body
615
+ %body-atts; >
616
+
617
+
618
+ <!-- ============================================================= -->
619
+ <!-- BACK MATTER ELEMENTS -->
620
+ <!-- ============================================================= -->
621
+
622
+
623
+ <!-- BACK MATTER MODEL -->
624
+ <!-- Content model for the Back Matter (ancillary
625
+ material such as appendices) of a journal
626
+ article. -->
627
+ <!ENTITY % back-model "(label?, title*, (%doc-back-matter-mix;)* )">
628
+
629
+
630
+ <!-- BACK MATTER -->
631
+ <!-- Ancillary or supporting material not included
632
+ as part of the main textual content of a
633
+ journal article, for example appendices and
634
+ acknowledgments.
635
+ Details at:
636
+ http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=back
637
+ -->
638
+ <!ELEMENT back %back-model; >
639
+
640
+
641
+ <!-- ============================================================= -->
642
+ <!-- SUBARTICLE -->
643
+ <!-- ============================================================= -->
644
+
645
+
646
+ <!-- SUBARTICLE MODEL -->
647
+ <!-- Content model for the <sub-article> element
648
+ -->
649
+ <!ENTITY % sub-article-model
650
+ "((front | front-stub), body?, back?,
651
+ floats-group?,
652
+ (sub-article* | response*) )" >
653
+
654
+
655
+ <!-- SUBARTICLE -->
656
+ <!-- An article that is completely contained
657
+ inside another article. Both the article and
658
+ the sub-article have their own metadata.
659
+ Details at:
660
+ http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=sub-article
661
+ -->
662
+ <!ELEMENT sub-article %sub-article-model; >
663
+ <!ATTLIST sub-article
664
+ %sub-article-atts; >
665
+
666
+
667
+ <!-- FRONT MODEL STUB -->
668
+ <!-- Content model for the <front-stub> element,
669
+ a reduced metadata set for use in
670
+ sub-articles and responses -->
671
+ <!ENTITY % front-stub-model
672
+ "(article-id*, article-categories?,
673
+ title-group?,
674
+ (%contrib-group.class; |
675
+ %aff-alternatives.class;)*,
676
+ author-notes?, pub-date*,
677
+ volume?, volume-id*, volume-series?,
678
+ issue?, issue-id*, issue-title*,
679
+ issue-sponsor*, issue-part?, isbn*,
680
+ supplement?,
681
+ ((fpage, lpage?, page-range?) |
682
+ elocation-id)?,
683
+ (%address-link.class; | product |
684
+ supplementary-material)*, history?,
685
+ permissions?, self-uri*, related-article*,
686
+ abstract*, trans-abstract*, kwd-group*,
687
+ funding-group*, conference*, counts?,
688
+ custom-meta-group?)" >
689
+
690
+
691
+ <!-- STUB FRONT METADATA -->
692
+ <!-- A reduced metadata set for use in
693
+ sub-articles and responses, which will
694
+ inherit metadata not defined in the stub
695
+ from the enclosing article
696
+ Details at:
697
+ http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=front-stub
698
+ -->
699
+ <!ELEMENT front-stub %front-stub-model; >
700
+
701
+
702
+ <!-- ============================================================= -->
703
+ <!-- RESPONSE ELEMENTS -->
704
+ <!-- ============================================================= -->
705
+
706
+
707
+ <!-- RESPONSE -->
708
+ <!-- Reply, response, or commentary concerning the
709
+ journal article. In the typical case, the
710
+ response is included in the same XML package
711
+ as the original article, and thus attached
712
+ at the end of the article proper.
713
+ Details at:
714
+ http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=response
715
+ -->
716
+ <!ELEMENT response %article-short-model; >
717
+ <!ATTLIST response
718
+ %response-atts; >
719
+
720
+
721
+ <!-- ================== End Journal Publishing DTD =============== -->