statsample-ekatena 2.0.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (156) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +15 -0
  3. data/.travis.yml +23 -0
  4. data/CONTRIBUTING.md +17 -0
  5. data/Gemfile +2 -0
  6. data/History.txt +457 -0
  7. data/LICENSE.txt +12 -0
  8. data/README.md +175 -0
  9. data/Rakefile +44 -0
  10. data/benchmarks/correlation_matrix_15_variables.rb +32 -0
  11. data/benchmarks/correlation_matrix_5_variables.rb +33 -0
  12. data/benchmarks/correlation_matrix_methods/correlation_matrix.ds +0 -0
  13. data/benchmarks/correlation_matrix_methods/correlation_matrix.html +93 -0
  14. data/benchmarks/correlation_matrix_methods/correlation_matrix.rb +71 -0
  15. data/benchmarks/correlation_matrix_methods/correlation_matrix.xls +0 -0
  16. data/benchmarks/correlation_matrix_methods/correlation_matrix_gsl_ruby.ods +0 -0
  17. data/benchmarks/correlation_matrix_methods/correlation_matrix_with_graphics.ods +0 -0
  18. data/benchmarks/correlation_matrix_methods/results.ds +0 -0
  19. data/benchmarks/factor_map.rb +37 -0
  20. data/benchmarks/helpers_benchmark.rb +5 -0
  21. data/data/locale/es/LC_MESSAGES/statsample.mo +0 -0
  22. data/doc_latex/manual/equations.tex +78 -0
  23. data/examples/boxplot.rb +28 -0
  24. data/examples/chisquare_test.rb +23 -0
  25. data/examples/correlation_matrix.rb +32 -0
  26. data/examples/dataset.rb +30 -0
  27. data/examples/dominance_analysis.rb +33 -0
  28. data/examples/dominance_analysis_bootstrap.rb +32 -0
  29. data/examples/histogram.rb +26 -0
  30. data/examples/icc.rb +24 -0
  31. data/examples/levene.rb +29 -0
  32. data/examples/multiple_regression.rb +20 -0
  33. data/examples/multivariate_correlation.rb +33 -0
  34. data/examples/parallel_analysis.rb +40 -0
  35. data/examples/polychoric.rb +40 -0
  36. data/examples/principal_axis.rb +26 -0
  37. data/examples/reliability.rb +31 -0
  38. data/examples/scatterplot.rb +25 -0
  39. data/examples/t_test.rb +27 -0
  40. data/examples/tetrachoric.rb +17 -0
  41. data/examples/u_test.rb +24 -0
  42. data/examples/vector.rb +20 -0
  43. data/examples/velicer_map_test.rb +46 -0
  44. data/grab_references.rb +29 -0
  45. data/lib/spss.rb +134 -0
  46. data/lib/statsample-ekatena/analysis.rb +100 -0
  47. data/lib/statsample-ekatena/analysis/suite.rb +89 -0
  48. data/lib/statsample-ekatena/analysis/suitereportbuilder.rb +44 -0
  49. data/lib/statsample-ekatena/anova.rb +24 -0
  50. data/lib/statsample-ekatena/anova/contrast.rb +79 -0
  51. data/lib/statsample-ekatena/anova/oneway.rb +187 -0
  52. data/lib/statsample-ekatena/anova/twoway.rb +207 -0
  53. data/lib/statsample-ekatena/bivariate.rb +406 -0
  54. data/lib/statsample-ekatena/bivariate/pearson.rb +54 -0
  55. data/lib/statsample-ekatena/codification.rb +182 -0
  56. data/lib/statsample-ekatena/converter/csv.rb +28 -0
  57. data/lib/statsample-ekatena/converter/spss.rb +48 -0
  58. data/lib/statsample-ekatena/converters.rb +211 -0
  59. data/lib/statsample-ekatena/crosstab.rb +188 -0
  60. data/lib/statsample-ekatena/daru.rb +115 -0
  61. data/lib/statsample-ekatena/dataset.rb +10 -0
  62. data/lib/statsample-ekatena/dominanceanalysis.rb +425 -0
  63. data/lib/statsample-ekatena/dominanceanalysis/bootstrap.rb +232 -0
  64. data/lib/statsample-ekatena/factor.rb +104 -0
  65. data/lib/statsample-ekatena/factor/map.rb +124 -0
  66. data/lib/statsample-ekatena/factor/parallelanalysis.rb +166 -0
  67. data/lib/statsample-ekatena/factor/pca.rb +242 -0
  68. data/lib/statsample-ekatena/factor/principalaxis.rb +243 -0
  69. data/lib/statsample-ekatena/factor/rotation.rb +198 -0
  70. data/lib/statsample-ekatena/formula/fit_model.rb +46 -0
  71. data/lib/statsample-ekatena/formula/formula.rb +306 -0
  72. data/lib/statsample-ekatena/graph.rb +11 -0
  73. data/lib/statsample-ekatena/graph/boxplot.rb +236 -0
  74. data/lib/statsample-ekatena/graph/histogram.rb +198 -0
  75. data/lib/statsample-ekatena/graph/scatterplot.rb +213 -0
  76. data/lib/statsample-ekatena/histogram.rb +180 -0
  77. data/lib/statsample-ekatena/matrix.rb +329 -0
  78. data/lib/statsample-ekatena/multiset.rb +310 -0
  79. data/lib/statsample-ekatena/regression.rb +65 -0
  80. data/lib/statsample-ekatena/regression/multiple.rb +89 -0
  81. data/lib/statsample-ekatena/regression/multiple/alglibengine.rb +128 -0
  82. data/lib/statsample-ekatena/regression/multiple/baseengine.rb +251 -0
  83. data/lib/statsample-ekatena/regression/multiple/gslengine.rb +129 -0
  84. data/lib/statsample-ekatena/regression/multiple/matrixengine.rb +205 -0
  85. data/lib/statsample-ekatena/regression/multiple/rubyengine.rb +86 -0
  86. data/lib/statsample-ekatena/regression/simple.rb +121 -0
  87. data/lib/statsample-ekatena/reliability.rb +150 -0
  88. data/lib/statsample-ekatena/reliability/icc.rb +415 -0
  89. data/lib/statsample-ekatena/reliability/multiscaleanalysis.rb +181 -0
  90. data/lib/statsample-ekatena/reliability/scaleanalysis.rb +233 -0
  91. data/lib/statsample-ekatena/reliability/skillscaleanalysis.rb +114 -0
  92. data/lib/statsample-ekatena/resample.rb +15 -0
  93. data/lib/statsample-ekatena/shorthand.rb +125 -0
  94. data/lib/statsample-ekatena/srs.rb +169 -0
  95. data/lib/statsample-ekatena/test.rb +82 -0
  96. data/lib/statsample-ekatena/test/bartlettsphericity.rb +45 -0
  97. data/lib/statsample-ekatena/test/chisquare.rb +73 -0
  98. data/lib/statsample-ekatena/test/f.rb +52 -0
  99. data/lib/statsample-ekatena/test/kolmogorovsmirnov.rb +63 -0
  100. data/lib/statsample-ekatena/test/levene.rb +88 -0
  101. data/lib/statsample-ekatena/test/t.rb +309 -0
  102. data/lib/statsample-ekatena/test/umannwhitney.rb +208 -0
  103. data/lib/statsample-ekatena/test/wilcoxonsignedrank.rb +90 -0
  104. data/lib/statsample-ekatena/vector.rb +19 -0
  105. data/lib/statsample-ekatena/version.rb +3 -0
  106. data/lib/statsample.rb +282 -0
  107. data/po/es/statsample.mo +0 -0
  108. data/po/es/statsample.po +959 -0
  109. data/po/statsample.pot +947 -0
  110. data/references.txt +24 -0
  111. data/statsample-ekatena.gemspec +49 -0
  112. data/test/fixtures/bank2.dat +200 -0
  113. data/test/fixtures/correlation_matrix.rb +17 -0
  114. data/test/fixtures/df.csv +15 -0
  115. data/test/fixtures/hartman_23.matrix +9 -0
  116. data/test/fixtures/stock_data.csv +500 -0
  117. data/test/fixtures/tetmat_matrix.txt +5 -0
  118. data/test/fixtures/tetmat_test.txt +1001 -0
  119. data/test/helpers_tests.rb +83 -0
  120. data/test/test_analysis.rb +176 -0
  121. data/test/test_anova_contrast.rb +36 -0
  122. data/test/test_anovaoneway.rb +26 -0
  123. data/test/test_anovatwoway.rb +37 -0
  124. data/test/test_anovatwowaywithdataset.rb +47 -0
  125. data/test/test_anovawithvectors.rb +102 -0
  126. data/test/test_awesome_print_bug.rb +16 -0
  127. data/test/test_bartlettsphericity.rb +25 -0
  128. data/test/test_bivariate.rb +164 -0
  129. data/test/test_codification.rb +78 -0
  130. data/test/test_crosstab.rb +67 -0
  131. data/test/test_dominance_analysis.rb +39 -0
  132. data/test/test_factor.rb +228 -0
  133. data/test/test_factor_map.rb +38 -0
  134. data/test/test_factor_pa.rb +56 -0
  135. data/test/test_fit_model.rb +88 -0
  136. data/test/test_ggobi.rb +35 -0
  137. data/test/test_gsl.rb +15 -0
  138. data/test/test_histogram.rb +109 -0
  139. data/test/test_matrix.rb +48 -0
  140. data/test/test_multiset.rb +176 -0
  141. data/test/test_regression.rb +231 -0
  142. data/test/test_reliability.rb +223 -0
  143. data/test/test_reliability_icc.rb +198 -0
  144. data/test/test_reliability_skillscale.rb +57 -0
  145. data/test/test_resample.rb +24 -0
  146. data/test/test_srs.rb +9 -0
  147. data/test/test_statistics.rb +69 -0
  148. data/test/test_stest.rb +69 -0
  149. data/test/test_stratified.rb +17 -0
  150. data/test/test_test_f.rb +33 -0
  151. data/test/test_test_kolmogorovsmirnov.rb +34 -0
  152. data/test/test_test_t.rb +62 -0
  153. data/test/test_umannwhitney.rb +27 -0
  154. data/test/test_vector.rb +12 -0
  155. data/test/test_wilcoxonsignedrank.rb +64 -0
  156. metadata +570 -0
data/references.txt ADDED
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+ References
2
+ * Azen, R. & Budescu, D.V. (2003). The dominance analysis approach for comparing predictors in multiple regression. <em>Psychological Methods, 8</em>(2), 129-148.
3
+ * Azen, R. & Budescu, D.V. (2006). Comparing predictors in Multivariate Regression Models: An extension of Dominance Analysis. <em>Journal of Educational and Behavioral Statistics, 31</em>(2), 157-180.
4
+ * Budescu, D. V. (1993). Dominance analysis: a new approach to the problem of relative importance of predictors in multiple regression. <em>Psychological Bulletin, 114</em>, 542-551.
5
+ * Cochran, W.(1972). Sampling Techniques [spanish edition].
6
+ * Cohen et al. (2003). Applied Multiple Reggression / Correlation Analysis for the Behavioral Sciences
7
+ * Dinneen, L., & Blakesley, B. (1973). Algorithm AS 62: A Generator for the Sampling Distribution of the Mann- Whitney U Statistic. <em>Journal of the Royal Statistical Society, 22</em>(2), 269-273
8
+ * Dziuban, C., & Shirkey E. (1974). When is a correlation matrix appropriate for factor analysis? Some decision rules. Psychological Bulletin, 81(6), 358-361.
9
+ * Hayton, J., Allen, D. & Scarpello, V.(2004). Factor Retention Decisions in Exploratory Factor Analysis: a Tutorial on Parallel Analysis. <i>Organizational Research Methods, 7</i> (2), 191-205.
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+ * Härdle, W. & Simar, L. (2003). Applied Multivariate Statistical Analysis. Springer
11
+ * Leach, L. & Henson, R. (2007). The Use and Impact of Adjusted R2 Effects in Published Regression Research. Multiple Linear Regression Viewpoints, 33(1), 1-11.
12
+ * Lin, J. (2007). VARIMAX_K58 [Source code]. [http://www.johnny-lin.com/idl_code/varimax_k58.pro]
13
+ * Liu, O., & Rijmen, F. (2008). A modified procedure for parallel analysis of ordered categorical data. Behavior Research Methods, 40(2), 556-562.
14
+ * McGraw, K. & Wong, S.P. (1996). Forming Inferences About Some Intraclass Correlation Coefficients. Psychological methods, 1(1), 30-46.
15
+ * O'Connor, B. (2000). SPSS and SAS programs for determining the number of components using parallel analysis and Velicer's MAP test. Behavior Research Methods, Instruments, & Computers, 32(3), 396-402.
16
+ * SPSS Manual
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+ * Sawyer, S. (2005). Resampling Data: Using a Statistical Jacknife.
18
+ * Shrout,P. & Fleiss, J. (1979). Intraclass Correlation: Uses in assessing rater reliability. Psychological Bulletin, 86(2), 420-428
19
+ * Smith, L. (2002). A tutorial on Principal Component Analysis. Available on http://courses.eas.ualberta.ca/eas570/pca_tutorial.pdf
20
+ * http://en.wikipedia.org/wiki/Welch-Satterthwaite_equation
21
+ * http://europe.isixsigma.com/library/content/c080806a.asp
22
+ * http://stattrek.com/Lesson6/SRS.aspx
23
+ * http://talkstats.com/showthread.php?t=5056
24
+ * http://www.gnu.org/software/gsl/manual/html_node/The-histogram-struct.html
data/statsample-ekatena.gemspec ADDED
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+ $:.unshift File.expand_path("../lib/", __FILE__)
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+
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+ require 'statsample-ekatena/version'
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+ require 'date'
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+
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+ Gem::Specification.new do |s|
7
+ s.name = "statsample-ekatena"
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+ s.version = Statsample::VERSION
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+ s.date = Date.today.to_s
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+ s.homepage = "https://github.com/ekatena/statsample"
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+
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+ s.authors = ["Claudio Bustos", "Carlos Agarie"]
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+ s.email = ["clbustos@gmail.com", "carlos@onox.com.br"]
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+
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+ s.summary = "A suite for basic and advanced statistics on Ruby"
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+
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+ s.rdoc_options = ["--main", "README.md"]
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+ s.extra_rdoc_files = ["History.txt", "LICENSE.txt", "README.md", "references.txt"]
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+ s.require_paths = ["lib"]
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+
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+ s.files = `git ls-files`.split("\n")
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+ s.test_files = `git ls-files -- {test,spec,features}/*`.split("\n")
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+ s.executables = `git ls-files -- bin/*`.split("\n").map { |f| File.basename(f) }
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+
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+ s.add_runtime_dependency 'daru', '~> 0.1'
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+ s.add_runtime_dependency 'spreadsheet', '~> 1.1'
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+ s.add_runtime_dependency 'reportbuilder', '~> 1.4'
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+ s.add_runtime_dependency 'minimization', '~> 0.2'
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+ s.add_runtime_dependency 'dirty-memoize', '~> 0.0.4'
30
+ s.add_runtime_dependency 'extendmatrix', '~> 0.4'
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+ s.add_runtime_dependency 'rserve-client', '~> 0.3'
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+ s.add_runtime_dependency 'rubyvis', '~> 0.6.1'
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+ s.add_runtime_dependency 'distribution', '~> 0.7'
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+ s.add_runtime_dependency 'awesome_print', '~> 1.6'
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+
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+ s.add_development_dependency 'bundler', '~> 1.10'
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+ s.add_development_dependency 'rake', '~> 10.4'
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+ s.add_development_dependency 'rdoc', '~> 4.2'
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+ s.add_development_dependency 'shoulda', '~> 3.5'
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+ s.add_development_dependency 'shoulda-matchers', '~> 2.2'
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+ s.add_development_dependency 'minitest', '~> 5.7'
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+ s.add_development_dependency 'gettext', '~> 3.1'
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+ s.add_development_dependency 'mocha', '~> 1.1'
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+ s.add_development_dependency 'nmatrix', '~> 0.2.1'
45
+ s.add_development_dependency 'gsl', '~> 2.1'
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+ s.add_development_dependency 'pry'
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+ s.add_development_dependency 'rubocop'
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+ s.add_development_dependency 'activesupport', '~> 4.2'
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+ end
data/test/fixtures/bank2.dat ADDED
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data/test/fixtures/correlation_matrix.rb ADDED
@@ -0,0 +1,17 @@
1
+ # Retrieve Correlation matrix for eigth variables
2
+ module Statsample
3
+ module Fixtures
4
+ def harman_817
5
+ Matrix[
6
+ [1.0, 0.84, 0.62, -0.53, 0.03, 0.57, -0.33, -0.63],
7
+ [0.84, 1.00, 0.84, -0.68, -0.05, 0.76, -0.35, -0.73],
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+ [0.62, 0.84, 1.00, -0.76, 0.08, 0.81, -0.51, -0.81],
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+ [-0.53, -0.68, -0.76, 1.00, -0.25, -0.80, 0.62, 0.88],
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+ [0.03, -0.05, 0.08, -0.25, 1.00, 0.25, -0.72, -0.36],
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+ [0.57, 0.76, 0.81, -0.80, 0.25, 1.00, -0.58, -0.84],
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+ [-0.33, -0.35, -0.51, 0.62, -0.72, -0.58, 1.00, 0.68],
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+ [-0.63, -0.73, -0.81, 0.88, -0.36, -0.84, 0.68, 1.00]
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+ ].extend(Statsample::CovariateMatrix)
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+ end
16
+ end
17
+ end
data/test/fixtures/df.csv ADDED
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+ y,a,b,c,d,e
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+ 0,6,62.1,no,female,A
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+ 1,18,34.7,yes,male,B
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+ 1,6,29.7,no,female,C
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+ 0,4,71,no,male,C
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+ 1,5,36.9,yes,male,B
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+ 0,11,58.7,no,female,B
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+ 0,8,63.3,no,male,B
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+ 1,21,20.4,yes,male,A
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+ 1,2,20.5,yes,male,C
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+ 0,11,59.2,no,male,B
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+ 0,1,76.4,yes,female,A
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+ 0,8,71.7,no,female,B
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+ 1,2,77.5,no,male,C
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+ 1,3,31.1,no,male,B
data/test/fixtures/hartman_23.matrix ADDED
@@ -0,0 +1,9 @@
1
+ "height" "arm.span" "forearm" "lower.leg" "weight" "bitro.diameter" "chest.girth" "chest.width"
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+ "height" 1 0.846 0.805 0.859 0.473 0.398 0.301 0.382
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+ "arm.span" 0.846 1 0.881 0.826 0.376 0.326 0.277 0.415
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+ "forearm" 0.805 0.881 1 0.801 0.38 0.319 0.237 0.345
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+ "lower.leg" 0.859 0.826 0.801 1 0.436 0.329 0.327 0.365
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+ "weight" 0.473 0.376 0.38 0.436 1 0.762 0.73 0.629
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+ "bitro.diameter" 0.398 0.326 0.319 0.329 0.762 1 0.583 0.577
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+ "chest.girth" 0.301 0.277 0.237 0.327 0.73 0.583 1 0.539
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+ "chest.width" 0.382 0.415 0.345 0.365 0.629 0.577 0.539 1
data/test/fixtures/stock_data.csv ADDED
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