RubyGems - statsample-ekatena - Versions diffs - 2.0.2 - Mend

statsample-ekatena 2.0.2

Files changed (156) hide show

checksums.yaml +7 -0
data/.gitignore +15 -0
data/.travis.yml +23 -0
data/CONTRIBUTING.md +17 -0
data/Gemfile +2 -0
data/History.txt +457 -0
data/LICENSE.txt +12 -0
data/README.md +175 -0
data/Rakefile +44 -0
data/benchmarks/correlation_matrix_15_variables.rb +32 -0
data/benchmarks/correlation_matrix_5_variables.rb +33 -0
data/benchmarks/correlation_matrix_methods/correlation_matrix.ds +0 -0
data/benchmarks/correlation_matrix_methods/correlation_matrix.html +93 -0
data/benchmarks/correlation_matrix_methods/correlation_matrix.rb +71 -0
data/benchmarks/correlation_matrix_methods/correlation_matrix.xls +0 -0
data/benchmarks/correlation_matrix_methods/correlation_matrix_gsl_ruby.ods +0 -0
data/benchmarks/correlation_matrix_methods/correlation_matrix_with_graphics.ods +0 -0
data/benchmarks/correlation_matrix_methods/results.ds +0 -0
data/benchmarks/factor_map.rb +37 -0
data/benchmarks/helpers_benchmark.rb +5 -0
data/data/locale/es/LC_MESSAGES/statsample.mo +0 -0
data/doc_latex/manual/equations.tex +78 -0
data/examples/boxplot.rb +28 -0
data/examples/chisquare_test.rb +23 -0
data/examples/correlation_matrix.rb +32 -0
data/examples/dataset.rb +30 -0
data/examples/dominance_analysis.rb +33 -0
data/examples/dominance_analysis_bootstrap.rb +32 -0
data/examples/histogram.rb +26 -0
data/examples/icc.rb +24 -0
data/examples/levene.rb +29 -0
data/examples/multiple_regression.rb +20 -0
data/examples/multivariate_correlation.rb +33 -0
data/examples/parallel_analysis.rb +40 -0
data/examples/polychoric.rb +40 -0
data/examples/principal_axis.rb +26 -0
data/examples/reliability.rb +31 -0
data/examples/scatterplot.rb +25 -0
data/examples/t_test.rb +27 -0
data/examples/tetrachoric.rb +17 -0
data/examples/u_test.rb +24 -0
data/examples/vector.rb +20 -0
data/examples/velicer_map_test.rb +46 -0
data/grab_references.rb +29 -0
data/lib/spss.rb +134 -0
data/lib/statsample-ekatena/analysis.rb +100 -0
data/lib/statsample-ekatena/analysis/suite.rb +89 -0
data/lib/statsample-ekatena/analysis/suitereportbuilder.rb +44 -0
data/lib/statsample-ekatena/anova.rb +24 -0
data/lib/statsample-ekatena/anova/contrast.rb +79 -0
data/lib/statsample-ekatena/anova/oneway.rb +187 -0
data/lib/statsample-ekatena/anova/twoway.rb +207 -0
data/lib/statsample-ekatena/bivariate.rb +406 -0
data/lib/statsample-ekatena/bivariate/pearson.rb +54 -0
data/lib/statsample-ekatena/codification.rb +182 -0
data/lib/statsample-ekatena/converter/csv.rb +28 -0
data/lib/statsample-ekatena/converter/spss.rb +48 -0
data/lib/statsample-ekatena/converters.rb +211 -0
data/lib/statsample-ekatena/crosstab.rb +188 -0
data/lib/statsample-ekatena/daru.rb +115 -0
data/lib/statsample-ekatena/dataset.rb +10 -0
data/lib/statsample-ekatena/dominanceanalysis.rb +425 -0
data/lib/statsample-ekatena/dominanceanalysis/bootstrap.rb +232 -0
data/lib/statsample-ekatena/factor.rb +104 -0
data/lib/statsample-ekatena/factor/map.rb +124 -0
data/lib/statsample-ekatena/factor/parallelanalysis.rb +166 -0
data/lib/statsample-ekatena/factor/pca.rb +242 -0
data/lib/statsample-ekatena/factor/principalaxis.rb +243 -0
data/lib/statsample-ekatena/factor/rotation.rb +198 -0
data/lib/statsample-ekatena/formula/fit_model.rb +46 -0
data/lib/statsample-ekatena/formula/formula.rb +306 -0
data/lib/statsample-ekatena/graph.rb +11 -0
data/lib/statsample-ekatena/graph/boxplot.rb +236 -0
data/lib/statsample-ekatena/graph/histogram.rb +198 -0
data/lib/statsample-ekatena/graph/scatterplot.rb +213 -0
data/lib/statsample-ekatena/histogram.rb +180 -0
data/lib/statsample-ekatena/matrix.rb +329 -0
data/lib/statsample-ekatena/multiset.rb +310 -0
data/lib/statsample-ekatena/regression.rb +65 -0
data/lib/statsample-ekatena/regression/multiple.rb +89 -0
data/lib/statsample-ekatena/regression/multiple/alglibengine.rb +128 -0
data/lib/statsample-ekatena/regression/multiple/baseengine.rb +251 -0
data/lib/statsample-ekatena/regression/multiple/gslengine.rb +129 -0
data/lib/statsample-ekatena/regression/multiple/matrixengine.rb +205 -0
data/lib/statsample-ekatena/regression/multiple/rubyengine.rb +86 -0
data/lib/statsample-ekatena/regression/simple.rb +121 -0
data/lib/statsample-ekatena/reliability.rb +150 -0
data/lib/statsample-ekatena/reliability/icc.rb +415 -0
data/lib/statsample-ekatena/reliability/multiscaleanalysis.rb +181 -0
data/lib/statsample-ekatena/reliability/scaleanalysis.rb +233 -0
data/lib/statsample-ekatena/reliability/skillscaleanalysis.rb +114 -0
data/lib/statsample-ekatena/resample.rb +15 -0
data/lib/statsample-ekatena/shorthand.rb +125 -0
data/lib/statsample-ekatena/srs.rb +169 -0
data/lib/statsample-ekatena/test.rb +82 -0
data/lib/statsample-ekatena/test/bartlettsphericity.rb +45 -0
data/lib/statsample-ekatena/test/chisquare.rb +73 -0
data/lib/statsample-ekatena/test/f.rb +52 -0
data/lib/statsample-ekatena/test/kolmogorovsmirnov.rb +63 -0
data/lib/statsample-ekatena/test/levene.rb +88 -0
data/lib/statsample-ekatena/test/t.rb +309 -0
data/lib/statsample-ekatena/test/umannwhitney.rb +208 -0
data/lib/statsample-ekatena/test/wilcoxonsignedrank.rb +90 -0
data/lib/statsample-ekatena/vector.rb +19 -0
data/lib/statsample-ekatena/version.rb +3 -0
data/lib/statsample.rb +282 -0
data/po/es/statsample.mo +0 -0
data/po/es/statsample.po +959 -0
data/po/statsample.pot +947 -0
data/references.txt +24 -0
data/statsample-ekatena.gemspec +49 -0
data/test/fixtures/bank2.dat +200 -0
data/test/fixtures/correlation_matrix.rb +17 -0
data/test/fixtures/df.csv +15 -0
data/test/fixtures/hartman_23.matrix +9 -0
data/test/fixtures/stock_data.csv +500 -0
data/test/fixtures/tetmat_matrix.txt +5 -0
data/test/fixtures/tetmat_test.txt +1001 -0
data/test/helpers_tests.rb +83 -0
data/test/test_analysis.rb +176 -0
data/test/test_anova_contrast.rb +36 -0
data/test/test_anovaoneway.rb +26 -0
data/test/test_anovatwoway.rb +37 -0
data/test/test_anovatwowaywithdataset.rb +47 -0
data/test/test_anovawithvectors.rb +102 -0
data/test/test_awesome_print_bug.rb +16 -0
data/test/test_bartlettsphericity.rb +25 -0
data/test/test_bivariate.rb +164 -0
data/test/test_codification.rb +78 -0
data/test/test_crosstab.rb +67 -0
data/test/test_dominance_analysis.rb +39 -0
data/test/test_factor.rb +228 -0
data/test/test_factor_map.rb +38 -0
data/test/test_factor_pa.rb +56 -0
data/test/test_fit_model.rb +88 -0
data/test/test_ggobi.rb +35 -0
data/test/test_gsl.rb +15 -0
data/test/test_histogram.rb +109 -0
data/test/test_matrix.rb +48 -0
data/test/test_multiset.rb +176 -0
data/test/test_regression.rb +231 -0
data/test/test_reliability.rb +223 -0
data/test/test_reliability_icc.rb +198 -0
data/test/test_reliability_skillscale.rb +57 -0
data/test/test_resample.rb +24 -0
data/test/test_srs.rb +9 -0
data/test/test_statistics.rb +69 -0
data/test/test_stest.rb +69 -0
data/test/test_stratified.rb +17 -0
data/test/test_test_f.rb +33 -0
data/test/test_test_kolmogorovsmirnov.rb +34 -0
data/test/test_test_t.rb +62 -0
data/test/test_umannwhitney.rb +27 -0
data/test/test_vector.rb +12 -0
data/test/test_wilcoxonsignedrank.rb +64 -0
metadata +570 -0

data/references.txt ADDED

@@ -0,0 +1,24 @@
+References
+* Azen, R. & Budescu, D.V. (2003). The dominance analysis approach for comparing predictors in multiple regression. <em>Psychological Methods, 8</em>(2), 129-148.
+* Azen, R. & Budescu, D.V. (2006). Comparing predictors in Multivariate Regression Models: An extension of Dominance Analysis. <em>Journal of Educational and Behavioral Statistics, 31</em>(2), 157-180.
+* Budescu, D. V. (1993). Dominance analysis: a new approach to the problem of relative importance of predictors in multiple regression. <em>Psychological Bulletin, 114</em>, 542-551.
+* Cochran, W.(1972). Sampling Techniques [spanish edition].
+* Cohen et al. (2003). Applied Multiple Reggression / Correlation Analysis for the Behavioral Sciences
+* Dinneen, L., & Blakesley, B. (1973). Algorithm AS 62: A Generator for the Sampling Distribution of the Mann- Whitney U Statistic. <em>Journal of the Royal Statistical Society, 22</em>(2), 269-273
+* Dziuban, C., & Shirkey E. (1974). When is a correlation matrix appropriate for factor analysis? Some decision rules. Psychological Bulletin, 81(6), 358-361.
+* Hayton, J., Allen, D. & Scarpello, V.(2004). Factor Retention Decisions in Exploratory Factor Analysis: a Tutorial on Parallel Analysis. <i>Organizational Research Methods, 7</i> (2), 191-205.
+* Härdle, W. & Simar, L. (2003). Applied Multivariate Statistical Analysis. Springer
+* Leach, L. & Henson, R. (2007). The Use and Impact of Adjusted R2 Effects in Published Regression Research. Multiple Linear Regression Viewpoints, 33(1), 1-11.
+* Lin, J. (2007). VARIMAX_K58 [Source code]. [http://www.johnny-lin.com/idl_code/varimax_k58.pro]
+* Liu, O., & Rijmen, F. (2008). A modified procedure for parallel analysis of ordered categorical data. Behavior Research Methods, 40(2), 556-562.
+* McGraw, K. & Wong, S.P. (1996). Forming Inferences About Some Intraclass Correlation Coefficients. Psychological methods, 1(1), 30-46.
+* O'Connor, B. (2000). SPSS and SAS programs for determining the number of components using parallel analysis and Velicer's MAP test. Behavior Research Methods, Instruments, & Computers, 32(3), 396-402.
+* SPSS Manual
+* Sawyer, S. (2005). Resampling Data: Using a Statistical Jacknife.
+* Shrout,P. & Fleiss, J. (1979). Intraclass Correlation: Uses in assessing rater reliability. Psychological Bulletin, 86(2), 420-428
+* Smith, L. (2002). A tutorial on Principal Component Analysis. Available on http://courses.eas.ualberta.ca/eas570/pca_tutorial.pdf
+* http://en.wikipedia.org/wiki/Welch-Satterthwaite_equation
+* http://europe.isixsigma.com/library/content/c080806a.asp
+* http://stattrek.com/Lesson6/SRS.aspx
+* http://talkstats.com/showthread.php?t=5056
+* http://www.gnu.org/software/gsl/manual/html_node/The-histogram-struct.html

data/statsample-ekatena.gemspec ADDED

@@ -0,0 +1,49 @@
+$:.unshift File.expand_path("../lib/", __FILE__)
+require 'statsample-ekatena/version'
+require 'date'
+Gem::Specification.new do |s|
+  s.name = "statsample-ekatena"
+  s.version = Statsample::VERSION
+  s.date = Date.today.to_s
+  s.homepage = "https://github.com/ekatena/statsample"
+  s.authors = ["Claudio Bustos", "Carlos Agarie"]
+  s.email = ["clbustos@gmail.com", "carlos@onox.com.br"]
+  s.summary = "A suite for basic and advanced statistics on Ruby"
+  s.rdoc_options = ["--main", "README.md"]
+  s.extra_rdoc_files = ["History.txt", "LICENSE.txt", "README.md", "references.txt"]
+  s.require_paths = ["lib"]
+  s.files = `git ls-files`.split("\n")
+  s.test_files = `git ls-files -- {test,spec,features}/*`.split("\n")
+  s.executables = `git ls-files -- bin/*`.split("\n").map { |f| File.basename(f) }
+  s.add_runtime_dependency 'daru', '~> 0.1'
+  s.add_runtime_dependency 'spreadsheet', '~> 1.1'
+  s.add_runtime_dependency 'reportbuilder', '~> 1.4'
+  s.add_runtime_dependency 'minimization', '~> 0.2'
+  s.add_runtime_dependency 'dirty-memoize', '~> 0.0.4'
+  s.add_runtime_dependency 'extendmatrix', '~> 0.4'
+  s.add_runtime_dependency 'rserve-client', '~> 0.3'
+  s.add_runtime_dependency 'rubyvis', '~> 0.6.1'
+  s.add_runtime_dependency 'distribution', '~> 0.7'
+  s.add_runtime_dependency 'awesome_print', '~> 1.6'
+  s.add_development_dependency 'bundler', '~> 1.10'
+  s.add_development_dependency 'rake', '~> 10.4'
+  s.add_development_dependency 'rdoc', '~> 4.2'
+  s.add_development_dependency 'shoulda', '~> 3.5'
+  s.add_development_dependency 'shoulda-matchers', '~> 2.2'
+  s.add_development_dependency 'minitest', '~> 5.7'
+  s.add_development_dependency 'gettext', '~> 3.1'
+  s.add_development_dependency 'mocha', '~> 1.1'
+  s.add_development_dependency 'nmatrix', '~> 0.2.1'
+  s.add_development_dependency 'gsl', '~> 2.1'
+  s.add_development_dependency 'pry'
+  s.add_development_dependency 'rubocop'
+  s.add_development_dependency 'activesupport', '~> 4.2'
+end

data/test/fixtures/bank2.dat ADDED

@@ -0,0 +1,200 @@
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+   215.30000      130.30000      130.10000        9.30000       12.10000      140.20000
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+   215.20000      130.60000      130.80000       10.40000       11.20000      140.30000
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+   215.10000      130.50000      130.30000       10.60000       11.50000      140.10000
+   215.40000      130.70000      131.10000        9.70000       11.80000      140.60000
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+   215.10000      130.30000      129.90000       10.30000       11.50000      139.70000
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+   214.30000      129.90000      129.90000       10.20000       11.50000      139.60000

data/test/fixtures/correlation_matrix.rb ADDED

@@ -0,0 +1,17 @@
+# Retrieve Correlation matrix for eigth variables
+module Statsample
+  module Fixtures
+    def harman_817
+      Matrix[
+    [1.0,   0.84,   0.62,   -0.53,   0.03,    0.57,   -0.33,  -0.63],
+    [0.84,  1.00,   0.84,   -0.68,  -0.05,    0.76,   -0.35,  -0.73],
+    [0.62,  0.84,   1.00,   -0.76,   0.08,    0.81,   -0.51,  -0.81],
+    [-0.53, -0.68,  -0.76,  1.00,    -0.25,  -0.80,    0.62,   0.88],
+    [0.03,  -0.05,  0.08,   -0.25,   1.00,    0.25,   -0.72,  -0.36],
+    [0.57,   0.76,  0.81,   -0.80,   0.25,    1.00,   -0.58,  -0.84],
+    [-0.33, -0.35, -0.51,    0.62,  -0.72,   -0.58,    1.00,   0.68],
+    [-0.63, -0.73, -0.81,    0.88,  -0.36,   -0.84,    0.68,   1.00]
+    ].extend(Statsample::CovariateMatrix)
+    end
+  end
+end

data/test/fixtures/df.csv ADDED

@@ -0,0 +1,15 @@
+y,a,b,c,d,e
+0,6,62.1,no,female,A
+1,18,34.7,yes,male,B
+1,6,29.7,no,female,C
+0,4,71,no,male,C
+1,5,36.9,yes,male,B
+0,11,58.7,no,female,B
+0,8,63.3,no,male,B
+1,21,20.4,yes,male,A
+1,2,20.5,yes,male,C
+0,11,59.2,no,male,B
+0,1,76.4,yes,female,A
+0,8,71.7,no,female,B
+1,2,77.5,no,male,C
+1,3,31.1,no,male,B

data/test/fixtures/hartman_23.matrix ADDED

@@ -0,0 +1,9 @@
+"height" "arm.span" "forearm" "lower.leg" "weight" "bitro.diameter" "chest.girth" "chest.width"
+"height" 1 0.846 0.805 0.859 0.473 0.398 0.301 0.382
+"arm.span" 0.846 1 0.881 0.826 0.376 0.326 0.277 0.415
+"forearm" 0.805 0.881 1 0.801 0.38 0.319 0.237 0.345
+"lower.leg" 0.859 0.826 0.801 1 0.436 0.329 0.327 0.365
+"weight" 0.473 0.376 0.38 0.436 1 0.762 0.73 0.629
+"bitro.diameter" 0.398 0.326 0.319 0.329 0.762 1 0.583 0.577
+"chest.girth" 0.301 0.277 0.237 0.327 0.73 0.583 1 0.539
+"chest.width" 0.382 0.415 0.345 0.365 0.629 0.577 0.539 1

data/test/fixtures/stock_data.csv ADDED

@@ -0,0 +1,500 @@
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