sequenceserver 3.1.1 → 3.1.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (45) hide show
  1. checksums.yaml +4 -4
  2. data/lib/sequenceserver/api_errors.rb +24 -0
  3. data/lib/sequenceserver/blast/tasks.rb +1 -1
  4. data/lib/sequenceserver/blast.rb +6 -0
  5. data/lib/sequenceserver/database.rb +13 -0
  6. data/lib/sequenceserver/routes.rb +1 -1
  7. data/lib/sequenceserver/sequence.rb +1 -2
  8. data/lib/sequenceserver/version.rb +1 -1
  9. data/lib/sequenceserver.rb +1 -1
  10. data/public/css/app.min.css +1 -1
  11. data/public/css/sequenceserver.css +0 -18
  12. data/public/css/sequenceserver.min.css +2 -2
  13. data/public/js/alignment_exporter.js +16 -28
  14. data/public/js/cloud_share_modal.js +42 -42
  15. data/public/js/form.js +12 -10
  16. data/public/js/grapher.js +4 -4
  17. data/public/js/hit.js +3 -3
  18. data/public/js/hits.js +276 -0
  19. data/public/js/jquery_world.js +1 -1
  20. data/public/js/mailto.js +1 -3
  21. data/public/js/null_plugins/report_plugins.js +1 -0
  22. data/public/js/options.js +2 -6
  23. data/public/js/query.js +1 -1
  24. data/public/js/report.js +68 -252
  25. data/public/js/report_root.js +7 -5
  26. data/public/js/search.js +28 -11
  27. data/public/js/sequence.js +158 -158
  28. data/public/js/sequence_modal.js +28 -36
  29. data/public/js/sidebar.js +7 -6
  30. data/public/js/tests/alignment_exporter.spec.js +38 -0
  31. data/public/js/tests/cloud_share_modal.spec.js +75 -0
  32. data/public/js/tests/report.spec.js +37 -15
  33. data/public/packages/jquery-ui@1.13.3.js +19070 -0
  34. data/public/sequenceserver-report.min.js +3 -2481
  35. data/public/sequenceserver-report.min.js.LICENSE.txt +300 -0
  36. data/public/sequenceserver-report.min.js.map +1 -0
  37. data/public/sequenceserver-search.min.js +3 -2382
  38. data/public/sequenceserver-search.min.js.LICENSE.txt +292 -0
  39. data/public/sequenceserver-search.min.js.map +1 -0
  40. data/views/layout.erb +3 -7
  41. data/views/search.erb +1 -1
  42. data/views/search_layout.erb +1 -1
  43. metadata +11 -5
  44. data/public/config.js +0 -147
  45. data/public/packages/jquery-ui@1.11.4.js +0 -16624

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