sequenceserver 3.1.1 → 3.1.3

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Files changed (45) hide show
  1. checksums.yaml +4 -4
  2. data/lib/sequenceserver/api_errors.rb +24 -0
  3. data/lib/sequenceserver/blast/tasks.rb +1 -1
  4. data/lib/sequenceserver/blast.rb +6 -0
  5. data/lib/sequenceserver/database.rb +13 -0
  6. data/lib/sequenceserver/routes.rb +1 -1
  7. data/lib/sequenceserver/sequence.rb +1 -2
  8. data/lib/sequenceserver/version.rb +1 -1
  9. data/lib/sequenceserver.rb +1 -1
  10. data/public/css/app.min.css +1 -1
  11. data/public/css/sequenceserver.css +0 -18
  12. data/public/css/sequenceserver.min.css +2 -2
  13. data/public/js/alignment_exporter.js +16 -28
  14. data/public/js/cloud_share_modal.js +42 -42
  15. data/public/js/form.js +12 -10
  16. data/public/js/grapher.js +4 -4
  17. data/public/js/hit.js +3 -3
  18. data/public/js/hits.js +276 -0
  19. data/public/js/jquery_world.js +1 -1
  20. data/public/js/mailto.js +1 -3
  21. data/public/js/null_plugins/report_plugins.js +1 -0
  22. data/public/js/options.js +2 -6
  23. data/public/js/query.js +1 -1
  24. data/public/js/report.js +68 -252
  25. data/public/js/report_root.js +7 -5
  26. data/public/js/search.js +28 -11
  27. data/public/js/sequence.js +158 -158
  28. data/public/js/sequence_modal.js +28 -36
  29. data/public/js/sidebar.js +7 -6
  30. data/public/js/tests/alignment_exporter.spec.js +38 -0
  31. data/public/js/tests/cloud_share_modal.spec.js +75 -0
  32. data/public/js/tests/report.spec.js +37 -15
  33. data/public/packages/jquery-ui@1.13.3.js +19070 -0
  34. data/public/sequenceserver-report.min.js +3 -2481
  35. data/public/sequenceserver-report.min.js.LICENSE.txt +300 -0
  36. data/public/sequenceserver-report.min.js.map +1 -0
  37. data/public/sequenceserver-search.min.js +3 -2382
  38. data/public/sequenceserver-search.min.js.LICENSE.txt +292 -0
  39. data/public/sequenceserver-search.min.js.map +1 -0
  40. data/views/layout.erb +3 -7
  41. data/views/search.erb +1 -1
  42. data/views/search_layout.erb +1 -1
  43. metadata +11 -5
  44. data/public/config.js +0 -147
  45. data/public/packages/jquery-ui@1.11.4.js +0 -16624

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