sequenceserver 2.0.0.rc3 → 2.0.0.rc8

Sign up to get free protection for your applications and to get access to all the features.
Files changed (473) hide show
  1. checksums.yaml +4 -4
  2. data/bin/chromedriver +0 -0
  3. data/bin/geckodriver +0 -0
  4. data/bin/sequenceserver +39 -29
  5. data/lib/sequenceserver.rb +48 -22
  6. data/lib/sequenceserver/blast/job.rb +11 -1
  7. data/lib/sequenceserver/database.rb +7 -168
  8. data/lib/sequenceserver/exceptions.rb +14 -0
  9. data/lib/sequenceserver/makeblastdb.rb +323 -0
  10. data/lib/sequenceserver/routes.rb +6 -1
  11. data/lib/sequenceserver/sequence.rb +1 -1
  12. data/lib/sequenceserver/version.rb +1 -1
  13. data/public/css/sequenceserver.css +10 -3
  14. data/public/css/sequenceserver.min.css +1 -1
  15. data/public/js/error_modal.js +27 -29
  16. data/public/js/hit.js +14 -5
  17. data/public/js/jquery_world.js +1 -1
  18. data/public/js/query.js +31 -15
  19. data/public/js/report.js +13 -6
  20. data/public/js/search.js +44 -24
  21. data/public/js/sequence_modal.js +10 -5
  22. data/public/js/sidebar.js +52 -28
  23. data/public/sequenceserver-report.min.js +17 -17
  24. data/public/sequenceserver-search.min.js +2 -2
  25. data/views/layout.erb +5 -1
  26. data/views/report.erb +1 -1
  27. data/views/search.erb +1 -1
  28. metadata +9 -450
  29. data/.bootstrap/config.json +0 -433
  30. data/.codeclimate.yml +0 -31
  31. data/.csslintrc +0 -2
  32. data/.eslintignore +0 -1
  33. data/.eslintrc.json +0 -36
  34. data/.gitignore +0 -56
  35. data/.mailmap +0 -5
  36. data/.rspec +0 -3
  37. data/.rubocop.yml +0 -61
  38. data/.travis.yml +0 -74
  39. data/AppImage/recipe.yml +0 -15
  40. data/AppImage/sequenceserver.desktop +0 -8
  41. data/AppImage/sequenceserver.png +0 -0
  42. data/AppImage/sequenceserver.sh +0 -16
  43. data/Dockerfile +0 -23
  44. data/LICENSE.txt +0 -661
  45. data/LICENSE/Apache.txt +0 -176
  46. data/LICENSE/d3.txt +0 -26
  47. data/README.md +0 -161
  48. data/package.json +0 -48
  49. data/public/vendor/.dependencies.json +0 -18
  50. data/public/vendor/.loaderversions +0 -1
  51. data/public/vendor/github/components/jquery@2.1.4/.gitignore +0 -1
  52. data/public/vendor/github/components/jquery@2.1.4/.jspm-hash +0 -1
  53. data/public/vendor/github/components/jquery@2.1.4/.jspm.json +0 -37
  54. data/public/vendor/github/components/jqueryui@1.11.4/.gitignore +0 -4
  55. data/public/vendor/github/components/jqueryui@1.11.4/.jspm-hash +0 -1
  56. data/public/vendor/github/components/jqueryui@1.11.4/.jspm.json +0 -136
  57. data/public/vendor/github/components/jqueryui@1.11.4/ui/.jshintrc +0 -24
  58. data/public/vendor/github/jspm/nodelibs-buffer@0.1.0/.jspm-hash +0 -1
  59. data/public/vendor/github/jspm/nodelibs-buffer@0.1.0/.jspm.json +0 -10
  60. data/public/vendor/github/jspm/nodelibs-events@0.1.1/.jspm-hash +0 -1
  61. data/public/vendor/github/jspm/nodelibs-events@0.1.1/.jspm.json +0 -10
  62. data/public/vendor/github/jspm/nodelibs-fs@0.1.2/.jspm-hash +0 -1
  63. data/public/vendor/github/jspm/nodelibs-module@0.1.0/.jspm-hash +0 -1
  64. data/public/vendor/github/jspm/nodelibs-module@0.1.0/.jspm.json +0 -3
  65. data/public/vendor/github/jspm/nodelibs-path@0.1.0/.jspm-hash +0 -1
  66. data/public/vendor/github/jspm/nodelibs-path@0.1.0/.jspm.json +0 -10
  67. data/public/vendor/github/jspm/nodelibs-process@0.1.1/.jspm-hash +0 -1
  68. data/public/vendor/github/jspm/nodelibs-stream@0.1.0/.jspm-hash +0 -1
  69. data/public/vendor/github/jspm/nodelibs-stream@0.1.0/.jspm.json +0 -10
  70. data/public/vendor/github/jspm/nodelibs-util@0.1.0/.jspm-hash +0 -1
  71. data/public/vendor/github/jspm/nodelibs-util@0.1.0/.jspm.json +0 -10
  72. data/public/vendor/github/mbostock/d3@3.5.6/.jspm-hash +0 -1
  73. data/public/vendor/github/mbostock/d3@3.5.6/.jspm.json +0 -76
  74. data/public/vendor/github/nicgirault/circosJs@1.7.0/.gitignore +0 -10
  75. data/public/vendor/github/nicgirault/circosJs@1.7.0/.jspm-hash +0 -1
  76. data/public/vendor/github/systemjs/plugin-css@0.1.15/.gitignore +0 -1
  77. data/public/vendor/github/systemjs/plugin-css@0.1.15/.jspm-hash +0 -1
  78. data/public/vendor/github/systemjs/plugin-css@0.1.15/.jspm.json +0 -4
  79. data/public/vendor/github/systemjs/plugin-json@0.1.0/.jspm-hash +0 -1
  80. data/public/vendor/github/twbs/bootstrap@3.3.5/.jspm-hash +0 -1
  81. data/public/vendor/github/twbs/bootstrap@3.3.5/.jspm.json +0 -100
  82. data/public/vendor/npm/amdefine@1.0.0/.jspm-hash +0 -1
  83. data/public/vendor/npm/amdefine@1.0.0/.jspm.json +0 -55
  84. data/public/vendor/npm/babel-core@5.8.23/.jspm-hash +0 -1
  85. data/public/vendor/npm/babel-runtime@5.8.20/.jspm-hash +0 -1
  86. data/public/vendor/npm/babel-runtime@5.8.20/.npmignore +0 -2
  87. data/public/vendor/npm/base62@0.1.1/.jspm-hash +0 -1
  88. data/public/vendor/npm/base62@0.1.1/.jspm.json +0 -49
  89. data/public/vendor/npm/base62@0.1.1/.travis.yml +0 -4
  90. data/public/vendor/npm/base64-js@0.0.8/.jspm-hash +0 -1
  91. data/public/vendor/npm/base64-js@0.0.8/.jspm.json +0 -77
  92. data/public/vendor/npm/base64-js@0.0.8/.travis.yml +0 -5
  93. data/public/vendor/npm/buffer@3.4.3/.jspm-hash +0 -1
  94. data/public/vendor/npm/buffer@3.4.3/.jspm.json +0 -105
  95. data/public/vendor/npm/buffer@3.4.3/.npmignore +0 -1
  96. data/public/vendor/npm/buffer@3.4.3/.travis.yml +0 -8
  97. data/public/vendor/npm/buffer@3.4.3/.zuul.yml +0 -20
  98. data/public/vendor/npm/core-js@1.1.2/.eslintrc +0 -36
  99. data/public/vendor/npm/core-js@1.1.2/.gitattributes +0 -1
  100. data/public/vendor/npm/core-js@1.1.2/.jspm-hash +0 -1
  101. data/public/vendor/npm/core-js@1.1.2/.npmignore +0 -10
  102. data/public/vendor/npm/core-js@1.1.2/.travis.yml +0 -3
  103. data/public/vendor/npm/core-util-is@1.0.1/.jspm-hash +0 -1
  104. data/public/vendor/npm/core-util-is@1.0.1/.jspm.json +0 -58
  105. data/public/vendor/npm/envify@3.4.0/.jspm-hash +0 -1
  106. data/public/vendor/npm/envify@3.4.0/.jspm.json +0 -72
  107. data/public/vendor/npm/envify@3.4.0/.npmignore +0 -2
  108. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/.jspm-hash +0 -1
  109. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/.jspm.json +0 -102
  110. data/public/vendor/npm/events@1.0.2/.jspm-hash +0 -1
  111. data/public/vendor/npm/events@1.0.2/.jspm.json +0 -67
  112. data/public/vendor/npm/events@1.0.2/.npmignore +0 -1
  113. data/public/vendor/npm/events@1.0.2/.travis.yml +0 -7
  114. data/public/vendor/npm/events@1.0.2/.zuul.yml +0 -12
  115. data/public/vendor/npm/font-awesome@4.4.0/.jspm-hash +0 -1
  116. data/public/vendor/npm/font-awesome@4.4.0/.jspm.json +0 -81
  117. data/public/vendor/npm/font-awesome@4.4.0/.npmignore +0 -42
  118. data/public/vendor/npm/ieee754@1.1.6/.jspm-hash +0 -1
  119. data/public/vendor/npm/ieee754@1.1.6/.jspm.json +0 -70
  120. data/public/vendor/npm/ieee754@1.1.6/.travis.yml +0 -7
  121. data/public/vendor/npm/ieee754@1.1.6/.zuul.yml +0 -20
  122. data/public/vendor/npm/inherits@2.0.1/.jspm-hash +0 -1
  123. data/public/vendor/npm/inherits@2.0.1/.jspm.json +0 -60
  124. data/public/vendor/npm/is-array@1.0.1/.jepso-ci.json +0 -3
  125. data/public/vendor/npm/is-array@1.0.1/.jspm-hash +0 -1
  126. data/public/vendor/npm/is-array@1.0.1/.jspm.json +0 -42
  127. data/public/vendor/npm/is-array@1.0.1/.npmignore +0 -0
  128. data/public/vendor/npm/isarray@0.0.1/.jspm-hash +0 -1
  129. data/public/vendor/npm/isarray@0.0.1/.jspm.json +0 -51
  130. data/public/vendor/npm/jstransform@10.1.0/.jshintrc +0 -28
  131. data/public/vendor/npm/jstransform@10.1.0/.jspm-hash +0 -1
  132. data/public/vendor/npm/jstransform@10.1.0/.jspm.json +0 -95
  133. data/public/vendor/npm/jstransform@10.1.0/.npmignore +0 -4
  134. data/public/vendor/npm/jstransform@10.1.0/.travis.yml +0 -8
  135. data/public/vendor/npm/path-browserify@0.0.0/.jspm-hash +0 -1
  136. data/public/vendor/npm/path-browserify@0.0.0/.jspm.json +0 -56
  137. data/public/vendor/npm/process@0.10.1/.jspm-hash +0 -1
  138. data/public/vendor/npm/react@0.13.3/.jspm-hash +0 -1
  139. data/public/vendor/npm/react@0.13.3/.jspm.json +0 -77
  140. data/public/vendor/npm/readable-stream@1.1.13/.jspm-hash +0 -1
  141. data/public/vendor/npm/readable-stream@1.1.13/.jspm.json +0 -95
  142. data/public/vendor/npm/readable-stream@1.1.13/.npmignore +0 -5
  143. data/public/vendor/npm/source-map@0.1.31/.jspm-hash +0 -1
  144. data/public/vendor/npm/source-map@0.1.31/.jspm.json +0 -133
  145. data/public/vendor/npm/source-map@0.1.31/.npmignore +0 -2
  146. data/public/vendor/npm/source-map@0.1.31/.travis.yml +0 -4
  147. data/public/vendor/npm/stream-browserify@1.0.0/.jspm-hash +0 -1
  148. data/public/vendor/npm/stream-browserify@1.0.0/.jspm.json +0 -77
  149. data/public/vendor/npm/stream-browserify@1.0.0/.travis.yml +0 -4
  150. data/public/vendor/npm/string_decoder@0.10.31/.jspm-hash +0 -1
  151. data/public/vendor/npm/string_decoder@0.10.31/.jspm.json +0 -58
  152. data/public/vendor/npm/string_decoder@0.10.31/.npmignore +0 -2
  153. data/public/vendor/npm/through@2.3.8/.jspm-hash +0 -1
  154. data/public/vendor/npm/through@2.3.8/.jspm.json +0 -72
  155. data/public/vendor/npm/through@2.3.8/.travis.yml +0 -5
  156. data/public/vendor/npm/underscore@1.8.3/.jspm-hash +0 -1
  157. data/public/vendor/npm/underscore@1.8.3/.jspm.json +0 -74
  158. data/public/vendor/npm/util@0.10.3/.jspm-hash +0 -1
  159. data/public/vendor/npm/util@0.10.3/.jspm.json +0 -58
  160. data/public/vendor/npm/util@0.10.3/.npmignore +0 -1
  161. data/public/vendor/npm/util@0.10.3/.travis.yml +0 -8
  162. data/public/vendor/npm/util@0.10.3/.zuul.yml +0 -10
  163. data/public/vendor/npm/webshim@1.15.8/.gitattributes +0 -12
  164. data/public/vendor/npm/webshim@1.15.8/.jspm-hash +0 -1
  165. data/public/vendor/npm/webshim@1.15.8/.jspm.json +0 -92
  166. data/public/vendor/npm/webshim@1.15.8/.npmignore +0 -16
  167. data/public/vendor/npm/webshim@1.15.8/.project +0 -12
  168. data/public/vendor/npm/webshim@1.15.8/demos/demos/filereader/upload/.keep +0 -0
  169. data/sequenceserver.gemspec +0 -55
  170. data/spec/blast_versions/blast_2.2.30/blast_2.2.30_spec.rb +0 -228
  171. data/spec/blast_versions/blast_2.2.30/import_spec_capybara_local_2.2.30.rb +0 -583
  172. data/spec/blast_versions/blast_2.2.31/blast_2.2.31_spec.rb +0 -228
  173. data/spec/blast_versions/blast_2.2.31/import_spec_capybara_local_2.2.31.rb +0 -587
  174. data/spec/blast_versions/blast_2.3.0/blast_2.3.0_spec.rb +0 -229
  175. data/spec/blast_versions/blast_2.3.0/import_spec_capybara_local_2.3.0.rb +0 -587
  176. data/spec/blast_versions/blast_2.4.0/blast_2.4.0_spec.rb +0 -228
  177. data/spec/blast_versions/blast_2.4.0/import_spec_capybara_local_2.4.0.rb +0 -588
  178. data/spec/blast_versions/blast_2.5.0/blast_2.5.0_spec.rb +0 -228
  179. data/spec/blast_versions/blast_2.5.0/import_spec_capybara_local_2.5.0.rb +0 -587
  180. data/spec/blast_versions/blast_2.6.0/blast_2.6.0_spec.rb +0 -228
  181. data/spec/blast_versions/blast_2.6.0/import_spec_capybara_local_2.6.0.rb +0 -587
  182. data/spec/blast_versions/blast_2.7.1/blast_2.7.1_spec.rb +0 -228
  183. data/spec/blast_versions/blast_2.7.1/import_spec_capybara_local_2.7.1.rb +0 -587
  184. data/spec/blast_versions/blast_2.8.1/blast_2.8.1_spec.rb +0 -228
  185. data/spec/blast_versions/blast_2.8.1/import_spec_capybara_local_2.8.1.rb +0 -587
  186. data/spec/blast_versions/blast_2.9.0/blast_2.9.0_spec.rb +0 -228
  187. data/spec/blast_versions/blast_2.9.0/import_spec_capybara_local_2.9.0.rb +0 -585
  188. data/spec/blast_versions/diamond_0.9.24/diamond_0.9.24_spec.rb +0 -176
  189. data/spec/blast_versions/diamond_0.9.24/import_spec_capybara_local_0.9.24.rb +0 -237
  190. data/spec/capybara_spec.rb +0 -334
  191. data/spec/config_spec.rb +0 -87
  192. data/spec/database/funky_ids/funky_ids.fa +0 -16
  193. data/spec/database/funky_ids/funky_ids.fa.nhd +0 -8
  194. data/spec/database/funky_ids/funky_ids.fa.nhi +0 -0
  195. data/spec/database/funky_ids/funky_ids.fa.nhr +0 -0
  196. data/spec/database/funky_ids/funky_ids.fa.nin +0 -0
  197. data/spec/database/funky_ids/funky_ids.fa.nog +0 -0
  198. data/spec/database/funky_ids/funky_ids.fa.nsd +0 -15
  199. data/spec/database/funky_ids/funky_ids.fa.nsi +0 -0
  200. data/spec/database/funky_ids/funky_ids.fa.nsq +0 -0
  201. data/spec/database/funky_sequences/README.md +0 -14
  202. data/spec/database/funky_sequences/funky_aa_sequences.fa +0 -7
  203. data/spec/database/funky_sequences/funky_aa_sequences.fa.phd +0 -3
  204. data/spec/database/funky_sequences/funky_aa_sequences.fa.phi +0 -0
  205. data/spec/database/funky_sequences/funky_aa_sequences.fa.phr +0 -0
  206. data/spec/database/funky_sequences/funky_aa_sequences.fa.pin +0 -0
  207. data/spec/database/funky_sequences/funky_aa_sequences.fa.pog +0 -0
  208. data/spec/database/funky_sequences/funky_aa_sequences.fa.psd +0 -6
  209. data/spec/database/funky_sequences/funky_aa_sequences.fa.psi +0 -0
  210. data/spec/database/funky_sequences/funky_aa_sequences.fa.psq +0 -0
  211. data/spec/database/funky_sequences/funky_na_sequences.fa +0 -2
  212. data/spec/database/funky_sequences/funky_na_sequences.fa.nhr +0 -0
  213. data/spec/database/funky_sequences/funky_na_sequences.fa.nin +0 -0
  214. data/spec/database/funky_sequences/funky_na_sequences.fa.nog +0 -0
  215. data/spec/database/funky_sequences/funky_na_sequences.fa.nsd +0 -2
  216. data/spec/database/funky_sequences/funky_na_sequences.fa.nsi +0 -0
  217. data/spec/database/funky_sequences/funky_na_sequences.fa.nsq +0 -0
  218. data/spec/database/ox_parse_error/query.fa +0 -1
  219. data/spec/database/ox_parse_error/rand1.fa +0 -2
  220. data/spec/database/ox_parse_error/rand1.fa.nhd +0 -1
  221. data/spec/database/ox_parse_error/rand1.fa.nhi +0 -0
  222. data/spec/database/ox_parse_error/rand1.fa.nhr +0 -0
  223. data/spec/database/ox_parse_error/rand1.fa.nin +0 -0
  224. data/spec/database/ox_parse_error/rand1.fa.nog +0 -0
  225. data/spec/database/ox_parse_error/rand1.fa.nsd +0 -2
  226. data/spec/database/ox_parse_error/rand1.fa.nsi +0 -0
  227. data/spec/database/ox_parse_error/rand1.fa.nsq +0 -0
  228. data/spec/database/ox_parse_error/rand2.fa +0 -2
  229. data/spec/database/ox_parse_error/rand2.fa.nhd +0 -1
  230. data/spec/database/ox_parse_error/rand2.fa.nhi +0 -0
  231. data/spec/database/ox_parse_error/rand2.fa.nhr +0 -0
  232. data/spec/database/ox_parse_error/rand2.fa.nin +0 -0
  233. data/spec/database/ox_parse_error/rand2.fa.nog +0 -0
  234. data/spec/database/ox_parse_error/rand2.fa.nsd +0 -2
  235. data/spec/database/ox_parse_error/rand2.fa.nsi +0 -0
  236. data/spec/database/ox_parse_error/rand2.fa.nsq +0 -0
  237. data/spec/database/ox_parse_error_unique_ids/query.fa +0 -1
  238. data/spec/database/ox_parse_error_unique_ids/rand1.fa +0 -2
  239. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhd +0 -1
  240. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhi +0 -0
  241. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhr +0 -0
  242. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nin +0 -0
  243. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nog +0 -0
  244. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsd +0 -2
  245. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsi +0 -0
  246. data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsq +0 -0
  247. data/spec/database/ox_parse_error_unique_ids/rand2.fa +0 -2
  248. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhd +0 -1
  249. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhi +0 -0
  250. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhr +0 -0
  251. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nin +0 -0
  252. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nog +0 -0
  253. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsd +0 -2
  254. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsi +0 -0
  255. data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsq +0 -0
  256. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa +0 -6
  257. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhd +0 -1
  258. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhi +0 -0
  259. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhr +0 -0
  260. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nin +0 -0
  261. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nog +0 -0
  262. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsd +0 -2
  263. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsi +0 -0
  264. data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsq +0 -0
  265. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhd +0 -8
  266. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhi +0 -0
  267. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhr +0 -0
  268. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nin +0 -0
  269. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nog +0 -0
  270. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nsd +0 -16
  271. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nsi +0 -0
  272. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nsq +0 -0
  273. data/spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.txt +0 -8
  274. data/spec/database/sample/links.rb +0 -23
  275. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta +0 -6449
  276. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.phd +0 -1189
  277. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.phi +0 -0
  278. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.phr +0 -0
  279. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.pin +0 -0
  280. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.pog +0 -0
  281. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.psd +0 -2378
  282. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.psi +0 -0
  283. data/spec/database/sample/proteins/Solenopsis_invicta/Sinvicta2-2-3.prot.subset.fasta.psq +0 -0
  284. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.phd +0 -9140
  285. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.phi +0 -0
  286. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.phr +0 -0
  287. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.pin +0 -0
  288. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.pog +0 -0
  289. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.psd +0 -18280
  290. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.psi +0 -0
  291. data/spec/database/sample/proteins/uniprot/2018-04-Swiss-Prot_insecta.fasta.psq +0 -0
  292. data/spec/database/sample/proteins/uniprot/URL +0 -1
  293. data/spec/database/sample/si_uniprot_idmap.yml +0 -14180
  294. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta +0 -5486
  295. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nhd +0 -473
  296. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nhi +0 -0
  297. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nhr +0 -0
  298. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nin +0 -0
  299. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nog +0 -0
  300. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nsd +0 -946
  301. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nsi +0 -0
  302. data/spec/database/sample/transcripts/Solenopsis_invicta/Sinvicta2-2-3.cdna.subset.fasta.nsq +0 -0
  303. data/spec/database/unformatted/Cardiocondyla_obscurior/Cobs1.4.proteins.fa +0 -148303
  304. data/spec/database/without_parse_seqids/without_parse_seqids.fa +0 -10
  305. data/spec/database/without_parse_seqids/without_parse_seqids.fa.phr +0 -0
  306. data/spec/database/without_parse_seqids/without_parse_seqids.fa.pin +0 -0
  307. data/spec/database/without_parse_seqids/without_parse_seqids.fa.psq +0 -0
  308. data/spec/database_spec.rb +0 -127
  309. data/spec/doctor_spec.disabled.rb +0 -107
  310. data/spec/dotdir/blast_2.2.30/blastn/BLASTN_XML_2.2.30.xml +0 -1201
  311. data/spec/dotdir/blast_2.2.30/blastn/job.yaml +0 -8
  312. data/spec/dotdir/blast_2.2.30/blastn_nohits/BLASTN_NO_HITS_XML_2.2.30.xml +0 -866
  313. data/spec/dotdir/blast_2.2.30/blastn_nohits/job.yaml +0 -8
  314. data/spec/dotdir/blast_2.2.30/blastp/BLASTP_XML_2.2.30.xml +0 -1181
  315. data/spec/dotdir/blast_2.2.30/blastp/job.yaml +0 -8
  316. data/spec/dotdir/blast_2.2.30/blastx/BLASTX_XML_2.2.30.xml +0 -1181
  317. data/spec/dotdir/blast_2.2.30/blastx/job.yaml +0 -8
  318. data/spec/dotdir/blast_2.2.30/tblastn/TBLASTN_XML_2.2.30.xml +0 -1181
  319. data/spec/dotdir/blast_2.2.30/tblastn/job.yaml +0 -8
  320. data/spec/dotdir/blast_2.2.30/tblastx/TBLASTX_XML_2.2.30.xml +0 -8857
  321. data/spec/dotdir/blast_2.2.30/tblastx/job.yaml +0 -8
  322. data/spec/dotdir/blast_2.2.31/blastn/BLASTN_XML_2.2.31.xml +0 -1201
  323. data/spec/dotdir/blast_2.2.31/blastn/job.yaml +0 -8
  324. data/spec/dotdir/blast_2.2.31/blastn_nohits/BLASTN_NO_HITS_XML_2.2.31.xml +0 -866
  325. data/spec/dotdir/blast_2.2.31/blastn_nohits/job.yaml +0 -8
  326. data/spec/dotdir/blast_2.2.31/blastp/BLASTP_XML_2.2.31.xml +0 -1181
  327. data/spec/dotdir/blast_2.2.31/blastp/job.yaml +0 -8
  328. data/spec/dotdir/blast_2.2.31/blastx/BLASTX_XML_2.2.31.xml +0 -1181
  329. data/spec/dotdir/blast_2.2.31/blastx/job.yaml +0 -8
  330. data/spec/dotdir/blast_2.2.31/tblastn/TBLASTN_XML_2.2.31.xml +0 -1181
  331. data/spec/dotdir/blast_2.2.31/tblastn/job.yaml +0 -8
  332. data/spec/dotdir/blast_2.2.31/tblastx/TBLASTX_XML_2.2.31.xml +0 -8857
  333. data/spec/dotdir/blast_2.2.31/tblastx/job.yaml +0 -8
  334. data/spec/dotdir/blast_2.3.0/blastn/BLASTN_XML_2.3.0.xml +0 -1201
  335. data/spec/dotdir/blast_2.3.0/blastn/job.yaml +0 -8
  336. data/spec/dotdir/blast_2.3.0/blastn_nohits/BLASTN_NO_HITS_XML_2.3.0.xml +0 -866
  337. data/spec/dotdir/blast_2.3.0/blastn_nohits/job.yaml +0 -8
  338. data/spec/dotdir/blast_2.3.0/blastp/BLASTP_XML_2.3.0.xml +0 -1181
  339. data/spec/dotdir/blast_2.3.0/blastp/job.yaml +0 -8
  340. data/spec/dotdir/blast_2.3.0/blastx/BLASTX_XML_2.3.0.xml +0 -1181
  341. data/spec/dotdir/blast_2.3.0/blastx/job.yaml +0 -8
  342. data/spec/dotdir/blast_2.3.0/tblastn/TBLASTN_XML_2.3.0.xml +0 -1181
  343. data/spec/dotdir/blast_2.3.0/tblastn/job.yaml +0 -8
  344. data/spec/dotdir/blast_2.3.0/tblastx/TBLASTX_XML_2.3.0.xml +0 -8857
  345. data/spec/dotdir/blast_2.3.0/tblastx/job.yaml +0 -8
  346. data/spec/dotdir/blast_2.4.0/blastn/BLASTN_XML_2.4.0.xml +0 -1201
  347. data/spec/dotdir/blast_2.4.0/blastn/job.yaml +0 -8
  348. data/spec/dotdir/blast_2.4.0/blastn_nohits/BLASTN_NO_HITS_XML_2.4.0.xml +0 -866
  349. data/spec/dotdir/blast_2.4.0/blastn_nohits/job.yaml +0 -8
  350. data/spec/dotdir/blast_2.4.0/blastp/BLASTP_XML_2.4.0.xml +0 -1181
  351. data/spec/dotdir/blast_2.4.0/blastp/job.yaml +0 -8
  352. data/spec/dotdir/blast_2.4.0/blastx/BLASTX_XML_2.4.0.xml +0 -1181
  353. data/spec/dotdir/blast_2.4.0/blastx/job.yaml +0 -8
  354. data/spec/dotdir/blast_2.4.0/tblastn/TBLASTN_XML_2.4.0.xml +0 -1181
  355. data/spec/dotdir/blast_2.4.0/tblastn/job.yaml +0 -8
  356. data/spec/dotdir/blast_2.4.0/tblastx/TBLASTX_XML_2.4.0.xml +0 -8857
  357. data/spec/dotdir/blast_2.4.0/tblastx/job.yaml +0 -8
  358. data/spec/dotdir/blast_2.5.0/blastn/BLASTN_XML_2.5.0.xml +0 -1201
  359. data/spec/dotdir/blast_2.5.0/blastn/job.yaml +0 -8
  360. data/spec/dotdir/blast_2.5.0/blastn_nohits/BLASTN_NO_HITS_XML_2.5.0.xml +0 -866
  361. data/spec/dotdir/blast_2.5.0/blastn_nohits/job.yaml +0 -8
  362. data/spec/dotdir/blast_2.5.0/blastp/BLASTP +0 -2161
  363. data/spec/dotdir/blast_2.5.0/blastp/BLASTP_XML_2.5.0.xml +0 -1181
  364. data/spec/dotdir/blast_2.5.0/blastp/job.yaml +0 -8
  365. data/spec/dotdir/blast_2.5.0/blastx/BLASTX +0 -28080
  366. data/spec/dotdir/blast_2.5.0/blastx/BLASTX_XML_2.5.0.xml +0 -1181
  367. data/spec/dotdir/blast_2.5.0/blastx/job.yaml +0 -8
  368. data/spec/dotdir/blast_2.5.0/tblastn/TBLASTN +0 -29486
  369. data/spec/dotdir/blast_2.5.0/tblastn/TBLASTN_XML_2.5.0.xml +0 -1181
  370. data/spec/dotdir/blast_2.5.0/tblastn/job.yaml +0 -8
  371. data/spec/dotdir/blast_2.5.0/tblastx/TBLASTX +0 -180859
  372. data/spec/dotdir/blast_2.5.0/tblastx/TBLASTX_XML_2.5.0.xml +0 -8857
  373. data/spec/dotdir/blast_2.5.0/tblastx/job.yaml +0 -8
  374. data/spec/dotdir/blast_2.6.0/blastn/BLASTN_XML_2.6.0.xml +0 -1201
  375. data/spec/dotdir/blast_2.6.0/blastn/job.yaml +0 -8
  376. data/spec/dotdir/blast_2.6.0/blastn_nohits/BLASTN_NO_HITS_XML_2.6.0.xml +0 -866
  377. data/spec/dotdir/blast_2.6.0/blastn_nohits/job.yaml +0 -8
  378. data/spec/dotdir/blast_2.6.0/blastp/BLASTP_XML_2.6.0.xml +0 -1181
  379. data/spec/dotdir/blast_2.6.0/blastp/job.yaml +0 -8
  380. data/spec/dotdir/blast_2.6.0/blastx/BLASTX_XML_2.6.0.xml +0 -1181
  381. data/spec/dotdir/blast_2.6.0/blastx/job.yaml +0 -8
  382. data/spec/dotdir/blast_2.6.0/tblastn/TBLASTN_XML_2.6.0.xml +0 -1181
  383. data/spec/dotdir/blast_2.6.0/tblastn/job.yaml +0 -8
  384. data/spec/dotdir/blast_2.6.0/tblastx/TBLASTX_XML_2.6.0.xml +0 -8857
  385. data/spec/dotdir/blast_2.6.0/tblastx/job.yaml +0 -8
  386. data/spec/dotdir/blast_2.7.1/blastn/BLASTN_XML_2.7.1.xml +0 -1201
  387. data/spec/dotdir/blast_2.7.1/blastn/job.yaml +0 -8
  388. data/spec/dotdir/blast_2.7.1/blastn_nohits/BLASTN_NO_HITS_XML_2.7.1.xml +0 -866
  389. data/spec/dotdir/blast_2.7.1/blastn_nohits/job.yaml +0 -8
  390. data/spec/dotdir/blast_2.7.1/blastp/BLASTP_XML_2.7.1.xml +0 -1181
  391. data/spec/dotdir/blast_2.7.1/blastp/job.yaml +0 -8
  392. data/spec/dotdir/blast_2.7.1/blastx/BLASTX_XML_2.7.1.xml +0 -1181
  393. data/spec/dotdir/blast_2.7.1/blastx/job.yaml +0 -8
  394. data/spec/dotdir/blast_2.7.1/tblastn/TBLASTN_XML_2.7.1.xml +0 -1181
  395. data/spec/dotdir/blast_2.7.1/tblastn/job.yaml +0 -8
  396. data/spec/dotdir/blast_2.7.1/tblastx/TBLASTX_XML_2.7.1.xml +0 -8857
  397. data/spec/dotdir/blast_2.7.1/tblastx/job.yaml +0 -8
  398. data/spec/dotdir/blast_2.8.1/blastn/BLASTN_XML_2.8.1.xml +0 -1201
  399. data/spec/dotdir/blast_2.8.1/blastn/job.yaml +0 -8
  400. data/spec/dotdir/blast_2.8.1/blastn_nohits/BLASTN_NO_HITS_XML_2.8.1.xml +0 -866
  401. data/spec/dotdir/blast_2.8.1/blastn_nohits/job.yaml +0 -8
  402. data/spec/dotdir/blast_2.8.1/blastp/BLASTP_XML_2.8.1.xml +0 -1181
  403. data/spec/dotdir/blast_2.8.1/blastp/job.yaml +0 -8
  404. data/spec/dotdir/blast_2.8.1/blastx/BLASTX_XML_2.8.1.xml +0 -1181
  405. data/spec/dotdir/blast_2.8.1/blastx/job.yaml +0 -8
  406. data/spec/dotdir/blast_2.8.1/tblastn/TBLASTN_XML_2.8.1.xml +0 -1181
  407. data/spec/dotdir/blast_2.8.1/tblastn/job.yaml +0 -8
  408. data/spec/dotdir/blast_2.8.1/tblastx/TBLASTX_XML_2.8.1.xml +0 -8857
  409. data/spec/dotdir/blast_2.8.1/tblastx/job.yaml +0 -8
  410. data/spec/dotdir/blast_2.9.0/blastn/BLASTN_XML_2.9.0.xml +0 -1201
  411. data/spec/dotdir/blast_2.9.0/blastn/job.yaml +0 -8
  412. data/spec/dotdir/blast_2.9.0/blastn_nohits/BLASTN_NO_HITS_XML_2.9.0.xml +0 -866
  413. data/spec/dotdir/blast_2.9.0/blastn_nohits/job.yaml +0 -8
  414. data/spec/dotdir/blast_2.9.0/blastp/BLASTP_XML_2.9.0.xml +0 -1181
  415. data/spec/dotdir/blast_2.9.0/blastp/job.yaml +0 -8
  416. data/spec/dotdir/blast_2.9.0/blastx/BLASTX_XML_2.9.0.xml +0 -1181
  417. data/spec/dotdir/blast_2.9.0/blastx/job.yaml +0 -8
  418. data/spec/dotdir/blast_2.9.0/tblastn/TBLASTN_XML_2.9.0.xml +0 -1181
  419. data/spec/dotdir/blast_2.9.0/tblastn/job.yaml +0 -8
  420. data/spec/dotdir/blast_2.9.0/tblastx/TBLASTX_XML_2.9.0.xml +0 -8857
  421. data/spec/dotdir/blast_2.9.0/tblastx/job.yaml +0 -8
  422. data/spec/dotdir/diamond_0.9.24/blastp/DIAMOND_BLASTP_0.9.24.xml +0 -1040
  423. data/spec/dotdir/diamond_0.9.24/blastp/job.yaml +0 -8
  424. data/spec/dotdir/diamond_0.9.24/blastx/DIAMOND_BLASTX_0.9.24.xml +0 -1040
  425. data/spec/dotdir/diamond_0.9.24/blastx/job.yaml +0 -8
  426. data/spec/dotdir/diamond_0.9.24/blastx_nohits/DIAMOND_BLASTX_NOHITS_0.9.24.xml +0 -41
  427. data/spec/dotdir/diamond_0.9.24/blastx_nohits/job.yaml +0 -8
  428. data/spec/download_helper.rb +0 -35
  429. data/spec/empty_config.yml +0 -0
  430. data/spec/routes_spec.rb +0 -93
  431. data/spec/sample.conf +0 -2
  432. data/spec/sequence_spec.rb +0 -100
  433. data/spec/sequences/MH011443_1_gi_1486783306_gb_MH011443_1.txt +0 -6
  434. data/spec/sequences/MH011443_1_gi_1486783307_gb_AYF55702_1.txt +0 -6
  435. data/spec/sequences/MH011443_1_gi_1528997474_gb_MH447967_1.txt +0 -30
  436. data/spec/sequences/MH011443_1_sp_P04637_P53_HUMAN.txt +0 -6
  437. data/spec/sequences/Nucleotide_TP53_COX41.fasta +0 -15
  438. data/spec/sequences/Protein_TP53_COX41.fasta +0 -12
  439. data/spec/sequences/Query_1_SI2_2_0_06267.txt +0 -6
  440. data/spec/sequences/alignment-2_hits.txt +0 -12
  441. data/spec/sequences/alignment-35_hits_diamond_blastp.txt +0 -210
  442. data/spec/sequences/alignment-35_hits_diamond_blastx.txt +0 -210
  443. data/spec/sequences/alignment-3_hits.txt +0 -18
  444. data/spec/sequences/alignment-40_hits_blastn.txt +0 -246
  445. data/spec/sequences/alignment-40_hits_blastp.txt +0 -240
  446. data/spec/sequences/alignment-40_hits_blastp_2.2.30.txt +0 -240
  447. data/spec/sequences/alignment-40_hits_blastx.txt +0 -240
  448. data/spec/sequences/alignment-40_hits_tblastn.txt +0 -240
  449. data/spec/sequences/alignment-40_hits_tblastn_2.2.30.txt +0 -240
  450. data/spec/sequences/alignment-40_hits_tblastx.txt +0 -2664
  451. data/spec/sequences/alignment-4_hits.txt +0 -24
  452. data/spec/sequences/alignment-4_hits_blastn.txt +0 -24
  453. data/spec/sequences/alignment-4_hits_blastp.txt +0 -24
  454. data/spec/sequences/alignment-4_hits_blastp_2.2.30.txt +0 -24
  455. data/spec/sequences/alignment-4_hits_blastx.txt +0 -24
  456. data/spec/sequences/alignment-4_hits_diamond_blastp.txt +0 -24
  457. data/spec/sequences/alignment-4_hits_diamond_blastx.txt +0 -24
  458. data/spec/sequences/alignment-4_hits_tblastn.txt +0 -24
  459. data/spec/sequences/alignment-4_hits_tblastn_2.2.30.txt +0 -24
  460. data/spec/sequences/alignment-4_hits_tblastx.txt +0 -318
  461. data/spec/sequences/nucleotide_query.fa +0 -21
  462. data/spec/sequences/problematic_query.fa +0 -5
  463. data/spec/sequences/protein_query.fa +0 -9
  464. data/spec/sequences/sample_query_fire_ant_obps.fa +0 -44
  465. data/spec/sequences/sequenceserver-2_hits.fa +0 -10
  466. data/spec/sequences/sequenceserver-SI2.2.0_06267.fa +0 -5
  467. data/spec/sequences/sp_P04637_P53_HUMAN_gi_1099170394_ref_XP_018868681_1.txt +0 -6
  468. data/spec/sequences/sp_P04637_P53_HUMAN_gi_120407068_ref_NP_000537_3.txt +0 -6
  469. data/spec/sequences/sp_P04637_P53_HUMAN_gi_1484127324_gb_MG595988_1.txt +0 -6
  470. data/spec/sequences/sp_P04637_P53_HUMAN_gi_395440626_gb_JQ694049_1.txt +0 -6
  471. data/spec/sequences/sp_P04637_P53_HUMAN_sp_P04637_P53_HUMAN.txt +0 -6
  472. data/spec/sequenceserver_spec.rb +0 -90
  473. data/spec/spec_helper.rb +0 -63
data/spec/sequences/alignment-35_hits_diamond_blastx.txt DELETED
@@ -1,210 +0,0 @@
1
- >MH011443.1:1-124
2
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
3
- >MH011443.1:1-124_alignment_sp|P04637|P53_HUMAN:146-186
4
- WVDSTPPPGTRVRA+AIYKQSQHMTEVVRRCPHHERCSDSD
5
- >sp|P04637|P53_HUMAN:146-186
6
- WVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD
7
- >MH011443.1:1-124
8
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
9
- >MH011443.1:1-124_alignment_sp|P56424|P53_MACMU:146-186
10
- WVDSTPPPG+RVRA+AIYKQSQHMTEVVRRCPHHERCSDSD
11
- >sp|P56424|P53_MACMU:146-186
12
- WVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD
13
- >MH011443.1:1-124
14
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
15
- >MH011443.1:1-124_alignment_sp|Q95330|P53_RABIT:143-183
16
- WVDSTPPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSDSD
17
- >sp|Q95330|P53_RABIT:143-183
18
- WVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSD
19
- >MH011443.1:1-124
20
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
21
- >MH011443.1:1-124_alignment_sp|Q9WUR6|P53_CAVPO:144-184
22
- WV+S PPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSDSD
23
- >sp|Q9WUR6|P53_CAVPO:144-184
24
- WVESPPPPGTRVRALAIYKKSQHMTEVVRRCPHHERCSDSD
25
- >MH011443.1:1-124
26
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
27
- >MH011443.1:1-124_alignment_sp|P10361|P53_RAT:144-184
28
- WV STPPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSD D
29
- >sp|P10361|P53_RAT:144-184
30
- WVTSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDGD
31
- >MH011443.1:1-124
32
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
33
- >MH011443.1:1-124_alignment_sp|P02340|P53_MOUSE:143-183
34
- WV +TPP G+RVRA+AIYK+SQHMTEVVRRCPHHERCSD D
35
- >sp|P02340|P53_MOUSE:143-183
36
- WVSATPPAGSRVRAMAIYKKSQHMTEVVRRCPHHERCSDGD
37
- >MH011443.1:1-118
38
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSD
39
- >MH011443.1:1-118_alignment_sp|Q8SPZ3|P53_DELLE:139-177
40
- WV S PPPGTRVRA+AIYK+S++MTEVVRRCPHHERCSD
41
- >sp|Q8SPZ3|P53_DELLE:139-177
42
- WVSSPPPPGTRVRAMAIYKKSEYMTEVVRRCPHHERCSD
43
- >MH011443.1:1-118
44
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSD
45
- >MH011443.1:1-118_alignment_sp|P67939|P53_BOVIN:138-176
46
- WVDS PPPGTRVRA+AIYK+ +HMTEVVRRCPHHER SD
47
- >sp|P67939|P53_BOVIN:138-176
48
- WVDSPPPPGTRVRAMAIYKKLEHMTEVVRRCPHHERSSD
49
- >MH011443.1:1-124
50
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
51
- >MH011443.1:1-124_alignment_sp|Q00366|P53_MESAU:149-189
52
- WV STPPPGTRVRA+AIYK+ Q+MTEVVRRCPHHER S+ D
53
- >sp|Q00366|P53_MESAU:149-189
54
- WVSSTPPPGTRVRAMAIYKKLQYMTEVVRRCPHHERSSEGD
55
- >MH011443.1:1-118
56
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSD
57
- >MH011443.1:1-118_alignment_sp|Q9TUB2|P53_PIG:138-176
58
- WV S PPPGTRVRA+AIYK+S++MTEVVRRCPHHER SD
59
- >sp|Q9TUB2|P53_PIG:138-176
60
- WVSSPPPPGTRVRAMAIYKKSEYMTEVVRRCPHHERSSD
61
- >MH011443.1:4-121
62
- VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDS
63
- >MH011443.1:4-121_alignment_sp|P79892|P53_HORSE:97-135
64
- V S PPPGTRVRA+AIYK+S+ MTEVVRRCPHHERCSDS
65
- >sp|P79892|P53_HORSE:97-135
66
- VSSPPPPGTRVRAMAIYKKSEFMTEVVRRCPHHERCSDS
67
- >MH011443.1:1-121
68
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDS
69
- >MH011443.1:1-121_alignment_sp|P41685|P53_FELCA:138-177
70
- WV S PPPGT VRA+AIYK+S+ MTEVVRRCPHHERC DS
71
- >sp|P41685|P53_FELCA:138-177
72
- WVRSPPPPGTCVRAMAIYKKSEFMTEVVRRCPHHERCPDS
73
- >MH011443.1:1-118
74
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSD
75
- >MH011443.1:1-118_alignment_sp|P51664|P53_SHEEP:134-172
76
- WVDS PPPGTRVRA+AIYK+ +HMTEVVRR PHHER SD
77
- >sp|P51664|P53_SHEEP:134-172
78
- WVDSPPPPGTRVRAMAIYKKLEHMTEVVRRSPHHERSSD
79
- >MH011443.1:1-121
80
- WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDS
81
- >MH011443.1:1-121_alignment_sp|Q29537|P53_CANLF:133-172
82
- WV S PPP T VRA+AIYK+S+ +TEVVRRCPHHERCSDS
83
- >sp|Q29537|P53_CANLF:133-172
84
- WVSSPPPPNTCVRAMAIYKKSEFVTEVVRRCPHHERCSDS
85
- >MH011443.1:4-121
86
- VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDS
87
- >MH011443.1:4-121_alignment_sp|O93379|P53_ICTPU:122-160
88
- V S+PPPG+ +RA A+YK+S+H+ EVVRRCPHHER +DS
89
- >sp|O93379|P53_ICTPU:122-160
90
- VSSSPPPGSVLRATAVYKRSEHVAEVVRRCPHHERSNDS
91
- >MH011443.1:4-112
92
- VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERC
93
- >MH011443.1:4-112_alignment_sp|P10360|P53_CHICK:132-167
94
- V PPPG+ +RAVA+YK+S+H+ EVVRRCPHHERC
95
- >sp|P10360|P53_CHICK:132-167
96
- VGVAPPPGSSLRAVAVYKKSEHVAEVVRRCPHHERC
97
- >MH011443.1:4-124
98
- VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
99
- >MH011443.1:4-124_alignment_sp|P79734|P53_DANRE:115-154
100
- VD PP G+ VRA AIYK+S+H+ EVVRRCPHHER D D
101
- >sp|P79734|P53_DANRE:115-154
102
- VDVAPPQGSVVRATAIYKKSEHVAEVVRRCPHHERTPDGD
103
- >MH011443.1:4-106
104
- VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHE
105
- >MH011443.1:4-106_alignment_sp|O15350|P73_HUMAN:165-198
106
- V + PPPGT +RA+ +YK+++H+T+VV+RCP+HE
107
- >sp|O15350|P73_HUMAN:165-198
108
- VSTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHE
109
- >MH011443.1:4-106
110
- VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHE
111
- >MH011443.1:4-106_alignment_sp|Q9JJP2|P73_MOUSE:157-190
112
- V + PPPGT +RA+ +YK+++H+T++V+RCP+HE
113
- >sp|Q9JJP2|P73_MOUSE:157-190
114
- VSTPPPPGTAIRAMPVYKKAEHVTDIVKRCPNHE
115
- >MH011443.1:4-106
116
- VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHE
117
- >MH011443.1:4-106_alignment_sp|P79820|P53_ORYLA:132-165
118
- V PP G +RA A+YK+++H+ +VVRRCPHH+
119
- >sp|P79820|P53_ORYLA:132-165
120
- VSKEPPKGAILRATAVYKKTEHVADVVRRCPHHQ
121
- >MH011443.1:4-124
122
- VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
123
- >MH011443.1:4-124_alignment_sp|Q92143|P53_XIPMA:113-152
124
- V PP G +RA A+YK+++H+ EVV+RCPHH+ SD
125
- >sp|Q92143|P53_XIPMA:113-152
126
- VKEEPPQGAVIRATAVYKKTEHVGEVVKRCPHHQSEDLSD
127
- >MH011443.1:4-106
128
- VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHE
129
- >MH011443.1:4-106_alignment_sp|Q9H3D4|P63_HUMAN:215-248
130
- V + PP G +RA+ +YK+++H+TEVV+RCP+HE
131
- >sp|Q9H3D4|P63_HUMAN:215-248
132
- VMTPPPQGAVIRAMPVYKKAEHVTEVVKRCPNHE
133
- >MH011443.1:4-106
134
- VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHE
135
- >MH011443.1:4-106_alignment_sp|Q9JJP6|P63_RAT:215-248
136
- V + PP G +RA+ +YK+++H+TEVV+RCP+HE
137
- >sp|Q9JJP6|P63_RAT:215-248
138
- VMTPPPQGAVIRAMPVYKKAEHVTEVVKRCPNHE
139
- >MH011443.1:4-106
140
- VDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHE
141
- >MH011443.1:4-106_alignment_sp|O88898|P63_MOUSE:215-248
142
- V + PP G +RA+ +YK+++H+TEVV+RCP+HE
143
- >sp|O88898|P63_MOUSE:215-248
144
- VMTPPPQGAVIRAMPVYKKAEHVTEVVKRCPNHE
145
- >NM_001861.5:60-567
146
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
147
- >NM_001861.5:60-567_alignment_sp|P13073|COX41_HUMAN:1-169
148
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
149
- >sp|P13073|COX41_HUMAN:1-169
150
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
151
- >NM_001861.5:60-567
152
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
153
- >NM_001861.5:60-567_alignment_sp|P00423|COX41_BOVIN:1-169
154
- MLATRVFSL+G+RAISTSVCVRAH SVVKSED++LP+Y+DRRD+PLP+VAHVK+LSASQKALKEKEKASWSSLS+DEKVELYR+KFKESFAEMNR +NEWKTVVG AMFFIGFTAL+++W+KHYVYGP+P +F++EWVAKQTKRMLDMKV PIQG ++KWDY+KNEWKK
155
- >sp|P00423|COX41_BOVIN:1-169
156
- MLATRVFSLIGRRAISTSVCVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK
157
- >NM_001861.5:135-567
158
- SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
159
- >NM_001861.5:135-567_alignment_sp|O46577|COX41_PANTR:1-144
160
- SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
161
- >sp|O46577|COX41_PANTR:1-144
162
- SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
163
- >NM_001861.5:135-567
164
- SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
165
- >NM_001861.5:135-567_alignment_sp|O46578|COX41_GORGO:1-144
166
- SVVKSEDFSLPAYMDRRD+PLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
167
- >sp|O46578|COX41_GORGO:1-144
168
- SVVKSEDFSLPAYMDRRDYPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
169
- >NM_001861.5:60-567
170
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
171
- >NM_001861.5:60-567_alignment_sp|P10888|COX41_RAT:1-169
172
- MLATR SL+GKRAISTSVC+RAH SVVKSED++LP+Y+DRRD+PLP+VAHVK LSASQKALKEKEKA WSSLS DEKV+LYRI+F ESFAEMN+G+NEWKTVVG AMFFIGFTALV++W+K YVYGP+P +FD++WVA QTKRMLDMKVNPIQG ++KWDY KNEWKK
173
- >sp|P10888|COX41_RAT:1-169
174
- MLATRALSLIGKRAISTSVCLRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKLLSASQKALKEKEKADWSSLSRDEKVQLYRIQFNESFAEMNKGTNEWKTVVGLAMFFIGFTALVLIWEKSYVYGPIPHTFDRDWVAMQTKRMLDMKVNPIQGFSAKWDYNKNEWKK
175
- >NM_001861.5:60-567
176
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
177
- >NM_001861.5:60-567_alignment_sp|P19783|COX41_MOUSE:1-169
178
- MLA+R SL+GKRAISTSVC+RAH SVVKSED++ P Y DRRD+PLP+VAHV LSASQKALKEKEKA WSSLS DEKV+LYRI+F ESFAEMNRG+NEWKTVVG AMFFIGFTALV++W+K YVYGP+P +FD++WVA QTKRMLDMK NPIQG ++KWDY+KNEWKK
179
- >sp|P19783|COX41_MOUSE:1-169
180
- MLASRALSLIGKRAISTSVCLRAHGSVVKSEDYAFPTYADRRDYPLPDVAHVTMLSASQKALKEKEKADWSSLSRDEKVQLYRIQFNESFAEMNRGTNEWKTVVGMAMFFIGFTALVLIWEKSYVYGPIPHTFDRDWVAMQTKRMLDMKANPIQGFSAKWDYDKNEWKK
181
- >NM_001861.5:60-567
182
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
183
- >NM_001861.5:60-567_alignment_sp|Q9TTT8|COX41_RABIT:1-169
184
- ML TR+ S G RAISTS C+RAH SVVKSED++LP+Y+DRRD+PLP+VAHVK LSA QKALKEKEKA W SL+ DEKVELYRI+F ESFAEMNRG+NEWKTVVG A+FFIGFTAL+++W+KHYVYGP+P +FDKEWVA QTKRMLDMKV+PIQG ++KWDY KNEW+K
185
- >sp|Q9TTT8|COX41_RABIT:1-169
186
- MLPTRLLSFSGSRAISTSFCLRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKQLSAGQKALKEKEKAPWGSLTRDEKVELYRIQFNESFAEMNRGTNEWKTVVGTALFFIGFTALILIWEKHYVYGPIPHTFDKEWVAMQTKRMLDMKVSPIQGFSAKWDYNKNEWRK
187
- >NM_001861.5:180-567
188
- RRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
189
- >NM_001861.5:180-567_alignment_sp|Q96KJ9|COX42_HUMAN:43-171
190
- +R +P+PE L+A ++ALKEKEK SW+ L+ EKV LYR++F E+FAEMNR SNEWKTV+G FFIGF ALVI WQ+ YV+ P P + E A+Q +RMLDMKVNP+QGLAS+WDYEK +WKK
191
- >sp|Q96KJ9|COX42_HUMAN:43-171
192
- QRYYPMPEEPFCTELNAEEQALKEKEKGSWTQLTHAEKVALYRLQFNETFAEMNRRSNEWKTVMGCVFFFIGFAALVIWWQRVYVFPPKPITLTDERKAQQLQRMLDMKVNPVQGLASRWDYEKKQWKK
193
- >NM_001861.5:60-351
194
- MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGS
195
- >NM_001861.5:60-351_alignment_sp|Q95283|COX41_PIG:1-97
196
- MLATRVF+L+G+RAISTSVCVRAH S VKSED++LP Y+DRRD+PLP+VAHVK+LSASQKA KEKEKASWSSLSMDEKVELYR+KF ESFAEMNR +
197
- >sp|Q95283|COX41_PIG:1-97
198
- MLATRVFNLIGRRAISTSVCVRAHGSXVKSEDYALPVYVDRRDYPLPDVAHVKNLSASQKAXKEKEKASWSSLSMDEKVELYRLKFNESFAEMNRST
199
- >NM_001861.5:135-567
200
- SVVKSEDFSLPAYMD---RRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
201
- >NM_001861.5:135-567_alignment_sp|Q91Y94|COX42_RAT:26-172
202
- S S + Y+D +R +P+P+ + LS Q+ALKEKEK SW+ LS EKV LYR++F E+FAEMN SNEWKTV+G FFIGFTALVI WQ+ YV+ + +E A+Q +R+LDMK NPIQGL++ WDYEK EWKK
203
- >sp|Q91Y94|COX42_RAT:26-172
204
- SAASSSQRRMTPYVDCYAQRSYPMPDEPYCTELSEEQRALKEKEKGSWAQLSQAEKVALYRLQFHETFAEMNHRSNEWKTVMGCVFFFIGFTALVIWWQRVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLSAHWDYEKKEWKK
205
- >NM_001861.5:180-567
206
- RRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
207
- >NM_001861.5:180-567_alignment_sp|Q91W29|COX42_MOUSE:44-172
208
- +R +P+P+ LS Q+ALKEKEK SW+ LS EKV LYR++F E+FAEMN SNEWKTV+G FFIGFTALVI WQ+ YV+ + +E A+Q +R+LDMK NPIQGLA+ WDYEK EWKK
209
- >sp|Q91W29|COX42_MOUSE:44-172
210
- QRSYPMPDEPFCTELSEEQRALKEKEKGSWTQLSQAEKVALYRLQFHETFAEMNHRSNEWKTVMGCVFFFIGFTALVIWWQRVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLAAHWDYEKKEWKK
data/spec/sequences/alignment-3_hits.txt DELETED
@@ -1,18 +0,0 @@
1
- >MH011443.1:1-123
2
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
3
- >MH011443.1:1-123_alignment_gi|1486783306|gb|MH011443.1|:1-123
4
- |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5
- >gi|1486783306|gb|MH011443.1|:1-123
6
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
7
- >MH011443.1:1-123
8
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
9
- >MH011443.1:1-123_alignment_gi|1528997474|gb|MH447967.1|:34-156
10
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11
- >gi|1528997474|gb|MH447967.1|:34-156
12
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
13
- >MH011443.1:1-123
14
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
15
- >MH011443.1:1-123_alignment_gi|1484127336|gb|MG595994.1|:436-558
16
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17
- >gi|1484127336|gb|MG595994.1|:436-558
18
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
data/spec/sequences/alignment-40_hits_blastn.txt DELETED
@@ -1,246 +0,0 @@
1
- >MH011443.1:1-123
2
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
3
- >MH011443.1:1-123_alignment_gi|1486783306|gb|MH011443.1|:1-123
4
- |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5
- >gi|1486783306|gb|MH011443.1|:1-123
6
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
7
- >MH011443.1:1-123
8
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
9
- >MH011443.1:1-123_alignment_gi|1528997474|gb|MH447967.1|:34-156
10
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11
- >gi|1528997474|gb|MH447967.1|:34-156
12
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
13
- >MH011443.1:1-123
14
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
15
- >MH011443.1:1-123_alignment_gi|1484127336|gb|MG595994.1|:436-558
16
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17
- >gi|1484127336|gb|MG595994.1|:436-558
18
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
19
- >MH011443.1:1-123
20
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
21
- >MH011443.1:1-123_alignment_gi|1484127334|gb|MG595993.1|:436-558
22
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
23
- >gi|1484127334|gb|MG595993.1|:436-558
24
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
25
- >MH011443.1:1-123
26
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
27
- >MH011443.1:1-123_alignment_gi|1484127332|gb|MG595992.1|:436-558
28
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
29
- >gi|1484127332|gb|MG595992.1|:436-558
30
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
31
- >MH011443.1:1-123
32
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
33
- >MH011443.1:1-123_alignment_gi|1484127330|gb|MG595991.1|:436-558
34
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
35
- >gi|1484127330|gb|MG595991.1|:436-558
36
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
37
- >MH011443.1:1-123
38
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
39
- >MH011443.1:1-123_alignment_gi|1484127328|gb|MG595990.1|:436-558
40
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
41
- >gi|1484127328|gb|MG595990.1|:436-558
42
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
43
- >MH011443.1:1-123
44
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
45
- >MH011443.1:1-123_alignment_gi|1484127326|gb|MG595989.1|:436-558
46
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
47
- >gi|1484127326|gb|MG595989.1|:436-558
48
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
49
- >MH011443.1:1-123
50
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
51
- >MH011443.1:1-123_alignment_gi|1484127324|gb|MG595988.1|:436-558
52
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
53
- >gi|1484127324|gb|MG595988.1|:436-558
54
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
55
- >MH011443.1:1-123
56
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
57
- >MH011443.1:1-123_alignment_gi|1484127322|gb|MG595987.1|:436-558
58
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
59
- >gi|1484127322|gb|MG595987.1|:436-558
60
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
61
- >MH011443.1:1-123
62
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
63
- >MH011443.1:1-123_alignment_gi|1484127320|gb|MG595986.1|:436-558
64
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
65
- >gi|1484127320|gb|MG595986.1|:436-558
66
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
67
- >MH011443.1:1-123
68
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
69
- >MH011443.1:1-123_alignment_gi|1484127308|gb|MG595980.1|:436-558
70
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
71
- >gi|1484127308|gb|MG595980.1|:436-558
72
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
73
- >MH011443.1:1-123
74
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
75
- >MH011443.1:1-123_alignment_gi|1484127306|gb|MG595979.1|:436-558
76
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
77
- >gi|1484127306|gb|MG595979.1|:436-558
78
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
79
- >MH011443.1:1-123
80
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
81
- >MH011443.1:1-123_alignment_gi|1472901693|gb|MH366343.1|:1-123
82
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
83
- >gi|1472901693|gb|MH366343.1|:1-123
84
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
85
- >MH011443.1:1-123
86
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
87
- >MH011443.1:1-123_alignment_gi|1548994291|gb|CP034495.1|:7578494-7578372
88
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
89
- >gi|1548994291|gb|CP034495.1|:7578494-7578372
90
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
91
- >MH011443.1:1-123
92
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
93
- >MH011443.1:1-123_alignment_gi|1548994291|gb|CP034495.1|:87758763-87758641
94
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
95
- >gi|1548994291|gb|CP034495.1|:87758763-87758641
96
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
97
- >MH011443.1:1-123
98
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
99
- >MH011443.1:1-123_alignment_gi|1233272224|gb|KX710182.1|:1038-1160
100
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
101
- >gi|1233272224|gb|KX710182.1|:1038-1160
102
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
103
- >MH011443.1:1-123
104
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
105
- >MH011443.1:1-123_alignment_gi|1147690151|emb|LT739496.1|:923-1045
106
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
107
- >gi|1147690151|emb|LT739496.1|:923-1045
108
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
109
- >MH011443.1:1-123
110
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
111
- >MH011443.1:1-123_alignment_gi|1049010735|gb|AH002919.2|:1384-1506
112
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
113
- >gi|1049010735|gb|AH002919.2|:1384-1506
114
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
115
- >MH011443.1:1-123
116
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
117
- >MH011443.1:1-123_alignment_gi|1046875959|ref|XM_003749209.4|:73-195
118
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
119
- >gi|1046875959|ref|XM_003749209.4|:73-195
120
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
121
- >MH011443.1:1-123
122
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
123
- >MH011443.1:1-123_alignment_gi|1036032387|gb|AH002918.2|:1392-1514
124
- |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
125
- >gi|1036032387|gb|AH002918.2|:1392-1514
126
- TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
127
- >NM_001861.5:1-698
128
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC
129
- >NM_001861.5:1-698_alignment_gi|974005291|ref|NM_001861.4|:129-826
130
- ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
131
- >gi|974005291|ref|NM_001861.4|:129-826
132
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC
133
- >NM_001861.5:1-697
134
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
135
- >NM_001861.5:1-697_alignment_gi|1913895|gb|U90915.1|HSU90915:12-708
136
- |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
137
- >gi|1913895|gb|U90915.1|HSU90915:12-708
138
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
139
- >NM_001861.5:8-697
140
- GGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
141
- >NM_001861.5:8-697_alignment_gi|92443776|gb|BC001452.1|:10-699
142
- ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
143
- >gi|92443776|gb|BC001452.1|:10-699
144
- GGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
145
- >NM_001861.5:1-694
146
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTG
147
- >NM_001861.5:1-694_alignment_gi|517251|emb|X54802.1|:4-696
148
- |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
149
- >gi|517251|emb|X54802.1|:4-696
150
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCT-GCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTG
151
- >NM_001861.5:1-692
152
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACC
153
- >NM_001861.5:1-692_alignment_gi|38382822|gb|BC062437.1|:8-699
154
- ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
155
- >gi|38382822|gb|BC062437.1|:8-699
156
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGACTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACC
157
- >NM_001861.5:4-698
158
- TTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC
159
- >NM_001861.5:4-698_alignment_gi|974005313|ref|NM_001318797.1|:1-691
160
- |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
161
- >gi|974005313|ref|NM_001318797.1|:1-691
162
- TTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCAT----GTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC
163
- >NM_001861.5:15-697
164
- GGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
165
- >NM_001861.5:15-697_alignment_gi|14250513|gb|BC008704.1|:1-683
166
- |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
167
- >gi|14250513|gb|BC008704.1|:1-683
168
- GGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
169
- >NM_001861.5:1-697
170
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
171
- >NM_001861.5:1-697_alignment_gi|1099162126|ref|XM_004058096.2|:129-825
172
- |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
173
- >gi|1099162126|ref|XM_004058096.2|:129-825
174
- CTCTTCCGGTCGCGGGACACCGGGCGTAGAGGGCGGTCGCGGCGGGCAGTGGCAGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCCATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACTACCCCTTGCCCGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCTCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
175
- >NM_001861.5:22-697
176
- GGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
177
- >NM_001861.5:22-697_alignment_gi|39645193|gb|BC021236.2|:1-676
178
- ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
179
- >gi|39645193|gb|BC021236.2|:1-676
180
- GGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
181
- >NM_001861.5:1-697
182
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
183
- >NM_001861.5:1-697_alignment_gi|197098965|ref|NM_001133005.1|:18-714
184
- |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
185
- >gi|197098965|ref|NM_001133005.1|:18-714
186
- CTCTTCCGGTCGCGGGACACCGGGCGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCACATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCTCAGCTTATGTGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGCTTCACCGCGCTCATTATCATGTGGCAGAAGCGCCATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAATGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATACAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
187
- >NM_001861.5:37-694
188
- TCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTG
189
- >NM_001861.5:37-694_alignment_gi|1311702|gb|M21575.1|HUMCOX4A:12-669
190
- ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
191
- >gi|1311702|gb|M21575.1|HUMCOX4A:12-669
192
- TCGCGGCGGGCGGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTG
193
- >NM_001861.5:1-673
194
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCT
195
- >NM_001861.5:1-673_alignment_gi|353681772|ref|NM_001251915.1|:5-671
196
- ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
197
- >gi|353681772|ref|NM_001251915.1|:5-671
198
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCG------CCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCT
199
- >NM_001861.5:49-697
200
- GTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
201
- >NM_001861.5:49-697_alignment_gi|675760952|ref|XM_003820846.2|:1-649
202
- ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
203
- >gi|675760952|ref|XM_003820846.2|:1-649
204
- GTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
205
- >NM_001861.5:1-698
206
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGG---------------------CAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC
207
- >NM_001861.5:1-698_alignment_gi|974005292|ref|NM_001318786.1|:129-847
208
- ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
209
- >gi|974005292|ref|NM_001318786.1|:129-847
210
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGGTGTACATTTTTATCTTTCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC
211
- >NM_001861.5:56-697
212
- CAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
213
- >NM_001861.5:56-697_alignment_gi|1370467948|ref|XM_024450156.1|:123-764
214
- ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
215
- >gi|1370467948|ref|XM_024450156.1|:123-764
216
- CAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
217
- >NM_001861.5:56-697
218
- CAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
219
- >NM_001861.5:56-697_alignment_gi|1367187339|ref|XM_009431356.3|:124-765
220
- |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
221
- >gi|1367187339|ref|XM_009431356.3|:124-765
222
- CAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
223
- >NM_001861.5:56-697
224
- CAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
225
- >NM_001861.5:56-697_alignment_gi|931598471|ref|XM_003820848.3|:124-765
226
- |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
227
- >gi|931598471|ref|XM_003820848.3|:124-765
228
- CAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
229
- >NM_001861.5:1-697
230
- CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
231
- >NM_001861.5:1-697_alignment_gi|820976031|ref|XM_003272504.3|:316-1006
232
- ||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
233
- >gi|820976031|ref|XM_003272504.3|:316-1006
234
- CTCTTCCGGTCGCGGGACACCCGGTGTAGAGGGCGGTCGCGGCGGGCAGCGACGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAGTTTCCACCTCTGTGTGTGTACGAGCACATGAAAGTGTCATGAAGAGCGAAGACTTTTCGCTCCCAGCTTATGTGGATCGGCGTGACCATCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCGCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCCAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGCTTCACCGCGCTCATTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAACCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCG------CCTGCGCCTGGCTCTGTCACCACCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
235
- >NM_001861.5:60-694
236
- ATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTG
237
- >NM_001861.5:60-694_alignment_gi|180934|gb|M34600.1|HUMCOX4AA:1-634
238
- ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
239
- >gi|180934|gb|M34600.1|HUMCOX4AA:1-634
240
- ATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCT-GCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTG
241
- >NM_001861.5:4-697
242
- TTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA
243
- >NM_001861.5:4-697_alignment_gi|820976036|ref|XM_012505370.1|:1-684
244
- |||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
245
- >gi|820976036|ref|XM_012505370.1|:1-684
246
- TTCCGGTCGCGGGACACCCGGTGTAGAGGGCGGTCGCGGCGGGCAGCGACGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAGTTTCCACCTCTGTGTGTGTACGAGCACAT----GTGTCATGAAGAGCGAAGACTTTTCGCTCCCAGCTTATGTGGATCGGCGTGACCATCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCGCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCCAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGCTTCACCGCGCTCATTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAACCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCG------CCTGCGCCTGGCTCTGTCACCACCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAA