sequenceserver 2.0.0.rc3 → 2.0.0.rc8

data/spec/dotdir/diamond_0.9.24/blastx/job.yaml

@@ -1,8 +0,0 @@
---- !ruby/object:SequenceServer::BLAST::Job
-id: 'diamond_0.9.24/blastx'
-submitted_at: 2019-06-18 15:49:12.135304300 +01:00
-imported_xml_file: DIAMOND_BLASTX_0.9.24.xml
-advanced_params: {}
-databases: []
-completed_at: 2019-06-18 15:49:12.144588000 +01:00
-exitstatus: 0

data/spec/dotdir/diamond_0.9.24/blastx_nohits/DIAMOND_BLASTX_NOHITS_0.9.24.xml

@@ -1,41 +0,0 @@
-<?xml version="1.0"?>
-<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
-<BlastOutput>
-  <BlastOutput_program>blastx</BlastOutput_program>
-  <BlastOutput_version>diamond 0.9.24</BlastOutput_version>
-  <BlastOutput_reference>Benjamin Buchfink, Xie Chao, and Daniel Huson (2015), &quot;Fast and sensitive protein alignment using DIAMOND&quot;, Nature Methods 12:59-60.</BlastOutput_reference>
-  <BlastOutput_db>nr.dmnd</BlastOutput_db>
-  <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
-  <BlastOutput_query-def>SI2.2.0_13722 Si_gnF.scaffold06207[1925625..1928536].pep_1</BlastOutput_query-def>
-  <BlastOutput_query-len>704</BlastOutput_query-len>
-  <BlastOutput_param>
-    <Parameters>
-      <Parameters_matrix>blosum62</Parameters_matrix>
-      <Parameters_expect>0.001</Parameters_expect>
-      <Parameters_gap-open>11</Parameters_gap-open>
-      <Parameters_gap-extend>1</Parameters_gap-extend>
-      <Parameters_filter>F</Parameters_filter>
-    </Parameters>
-  </BlastOutput_param>
-<BlastOutput_iterations>
-<Iteration>
-  <Iteration_iter-num>1</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>SI2.2.0_13722 Si_gnF.scaffold06207[1925625..1928536].pep_1</Iteration_query-def>
-  <Iteration_query-len>704</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>459708</Statistics_db-num>
-      <Statistics_db-len>170771147</Statistics_db-len>
-      <Statistics_hsp-len>0</Statistics_hsp-len>
-      <Statistics_eff-space>0</Statistics_eff-space>
-      <Statistics_kappa>0.041000</Statistics_kappa>
-      <Statistics_lambda>0.267000</Statistics_lambda>
-      <Statistics_entropy>0</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-</Iteration>
-</BlastOutput_iterations>
-</BlastOutput>

data/spec/dotdir/diamond_0.9.24/blastx_nohits/job.yaml

@@ -1,8 +0,0 @@
---- !ruby/object:SequenceServer::BLAST::Job
-id: 'diamond_0.9.24/blastx_nohits'
-submitted_at: 2019-07-01 14:20:40.624064600 +01:00
-imported_xml_file: DIAMOND_BLASTX_NOHITS_0.9.24.xml
-advanced_params: {}
-databases: []
-completed_at: 2019-07-01 14:20:40.627058200 +01:00
-exitstatus: 0

data/spec/download_helper.rb

@@ -1,35 +0,0 @@
-# Based on https://stackoverflow.com/a/29544674
-module DownloadHelpers
-  def downloads_dir
-    File.join(__dir__, 'downloads')
-  end
-
-  def wait_for_download
-    Timeout.timeout(Capybara.default_max_wait_time) do
-      loop do
-        sleep 1
-        break if downloaded?
-      end
-    end
-  end
-
-  def downloaded_file
-    downloads.first
-  end
-
-  def clear_downloads
-    FileUtils.rm(downloads)
-  end
-
-  def downloaded?
-    !downloading? && downloads.any?
-  end
-
-  def downloading?
-    downloads.grep(/\.part$/).any?
-  end
-
-  def downloads
-    Dir[File.join(downloads_dir, '*')]
-  end
-end

data/spec/routes_spec.rb

@@ -1,93 +0,0 @@
-require 'spec_helper'
-
-require 'rack/test'
-
-# Basic unit tests for HTTP / Rack interface.
-module SequenceServer
-  describe 'Routes' do
-    ENV['RACK_ENV'] = 'test'
-    include Rack::Test::Methods
-
-    before do
-      SequenceServer.init
-    end
-
-    before :each do
-      @params = {
-        'sequence'  => 'AGCTAGCTAGCT',
-        'databases' => [Database.first.id],
-        'method'    => (Database.first.type == 'protein' ? 'blastp' : 'blastn')
-      }
-    end
-
-    let 'app' do
-      SequenceServer
-    end
-
-    it 'returns Bad Request (400) if no blast method is provided' do
-      @params.delete('method')
-      post '/', @params
-      last_response.status.should == 400
-    end
-
-    it 'returns Bad Request (400) if no input sequence is provided' do
-      @params.delete('sequence')
-      post '/', @params
-      last_response.status.should == 400
-    end
-
-    it 'returns Bad Request (400) if no database id is provided' do
-      @params.delete('databases')
-      post '/', @params
-      last_response.status.should == 400
-    end
-
-    it 'returns Bad Request (400) if an empty database list is provided' do
-      @params['databases'].pop
-
-      # ensure the list of databases is empty
-      @params['databases'].should be_empty
-
-      post '/', @params
-      last_response.status.should == 400
-    end
-
-    it 'returns Bad Request (400) if incorrect database id is provided' do
-      @params['databases'] = ['123']
-      post '/', @params
-      last_response.status.should == 400
-    end
-
-    it 'returns Bad Request (400) if an incorrect blast method is supplied' do
-      @params['method'] = 'foo'
-      post '/', @params
-      last_response.status.should == 400
-    end
-
-    it 'returns Bad Request (400) if incorrect advanced params are supplied' do
-      @params['advanced'] = '-word_size 5; rm -rf /'
-      post '/', @params
-      last_response.status.should == 400
-    end
-
-    it 'redirects to /:jobid (302) when correct method, sequence, and database ids are'\
-       'provided but no advanced params' do
-      post '/', @params
-      last_response.should be_redirect
-      last_response.status.should eq 302
-
-      @params['advanced'] = '  '
-      post '/', @params
-      last_response.should be_redirect
-      last_response.status.should == 302
-    end
-
-    it 'redirects to /jobid (302) when correct method, sequence, and database ids and'\
-       'advanced params are provided' do
-      @params['advanced'] = '-evalue 1'
-      post '/', @params
-      last_response.should be_redirect
-      last_response.status.should == 302
-    end
-  end
-end

data/spec/sample.conf

@@ -1,2 +0,0 @@
-num_threads: 10
-:database: 'database_dir'

data/spec/sequence_spec.rb

@@ -1,100 +0,0 @@
-require 'spec_helper'
-require 'sequenceserver/sequence'
-require 'digest/md5'
-
-# Test Sequence class.
-module SequenceServer
-  describe 'Sequence type detection' do
-    it 'should be able to detect nucleotide sequences' do
-      sequences = [
-        'AAAAAAAAAAAAAAAAAAAAAT',
-        '           CAGATGCRRCAAAGCAAACGGCAA 34523453 652352',
-        'ACCNNNNNNXXXXCAUUUUUU',
-        "ACGT\n\t\t\nACCACGGACCACGAAAGCG"
-      ]
-      sequences.each do |sequence|
-        Sequence.guess_type(sequence).should == :nucleotide
-      end
-    end
-
-    it 'should be able to detect protein sequences' do
-      sequences = [
-        'ADSACGHKSJLFCVMGTL',
-        '  345   KSSYPHYSPPPPHS      345 23453 652352',
-        'GEYSNLNNNNNNXXXXSSSSSSSSSSSSSSSSSSSSSSS',
-        "EE\n\t\t\n         \t\t\EEQRRQQSARTSRRQR"
-      ]
-      sequences.each do |sequence|
-        Sequence.guess_type(sequence).should == :protein
-      end
-    end
-
-    it 'should be able to say sequence type detection impossible' do
-      Sequence.guess_type('ACSFGT').should be_nil
-    end
-
-    it 'should be able to tell composition of a sequence string' do
-      Sequence.composition('asdfasdfffffAsdf').should == { 'a' => 2, 'd' => 3,
-                                                           'f' => 7, 's' => 3,
-                                                           'A' => 1 }
-    end
-  end
-
-  describe 'Sequence retrieval' do
-    database_dir = File.join(__dir__, 'database')
-
-    let 'a_normal_database_id' do
-      Digest::MD5.hexdigest File.join(database_dir, 'sample', 'proteins',
-                                      'Solenopsis_invicta',
-                                      'Sinvicta2-2-3.prot.subset.fasta')
-    end
-
-    let 'funky_ids_database_id' do
-      Digest::MD5.hexdigest File.join(database_dir, 'funky_ids',
-                                      'funky_ids.fa')
-    end
-
-    before :all do
-      SequenceServer.config[:database_dir] = database_dir
-      Database.scan_databases_dir
-    end
-
-    it 'should be able to retrieve sequences from database' do
-      sequences = Sequence::Retriever.new('SI2.2.0_06267',
-                                          a_normal_database_id).sequences
-
-      sequences.length.should eq 1
-      sequences.first.gi.should be_nil
-      sequences.first.seqid.should eq 'SI2.2.0_06267'
-      sequences.first.accession.should eq 'SI2.2.0_06267'
-      sequences.first.id.should eq 'SI2.2.0_06267'
-      sequences.first.title.should eq 'locus=Si_gnF.scaffold02592'\
-                                      '[1282609..1284114].pep_2 quality=100.00'
-      sequences.first.value.should == "\
-MNTLWLSLWDYPGKLPLNFMVFDTKDDLQAAYWRDPYSIPLAVIFEDPQPISQRLIYEIRTNPSYTLPPPPTKLYSAPI\
-SCRKNKTGHWMDDILSIKTGESCPVNNYLHSGFLALQMITDITKIKLENSDVTIPDIKLIMFPKEPYTADWMLAFRVVI\
-PLYMVLALSQFITYLLILIVGEKENKIKEGMKMMGLNDSVF"
-    end
-
-    it 'should be able to retrieve more than one sequence from a database' do
-      sequences = Sequence::Retriever.new(['SI2.2.0_06267', 'SI2.2.0_13722'],
-                                          a_normal_database_id).sequences
-      sequences.length.should == 2
-    end
-
-    # it 'should be able to retrieve sequences from database even if accession'\
-    #    'contains only numbers' do
-    #   Database.scan_databases_dir
-    #   sequences = Sequence.from_blastdb(123456, funky_ids_database_id)
-    #   sequences.length.should == 1
-    # end
-
-    it 'should be able to retrieve sequences from database for all kinds of'\
-       'funky accessions' do
-      funky_accessions = ['abcdef#', 'abc#def', '123#456'] # , '123456#']
-      sequences = Sequence::Retriever.new(funky_accessions,
-                                          funky_ids_database_id).sequences
-      sequences.length.should == 3
-    end
-  end
-end

data/spec/sequences/MH011443_1_gi_1486783306_gb_MH011443_1.txt

@@ -1,6 +0,0 @@
->MH011443.1:1-123
-TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
->MH011443.1:1-123_alignment_gi|1486783306|gb|MH011443.1|:1-123
-|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
->gi|1486783306|gb|MH011443.1|:1-123
-TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT

data/spec/sequences/MH011443_1_gi_1486783307_gb_AYF55702_1.txt

@@ -1,6 +0,0 @@
->MH011443.1:1-123
-WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
->MH011443.1:1-123_alignment_gi|1486783307|gb|AYF55702.1|:1-41
-WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
->gi|1486783307|gb|AYF55702.1|:1-41
-WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD

data/spec/sequences/MH011443_1_gi_1528997474_gb_MH447967_1.txt

@@ -1,30 +0,0 @@
->MH011443.1:1-123
-WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
->MH011443.1:1-123_alignment_gi|1528997474|gb|MH447967.1|:34-156
-WVDSTPPPGTRVRA+AIYKQSQHMTEVVRRCPHHERCSDSD
->gi|1528997474|gb|MH447967.1|:34-156
-WVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD
->MH011443.1:2-121
-RYLSSAHGGGSASQPPSCAVTACRWPRRGRGCRAGVWNQP
->MH011443.1:2-121_alignment_gi|1528997474|gb|MH447967.1|:35-154
-RYLSSAHGGGSASQPPSCAVTACRWP RGRGCRAGVWNQP
->gi|1528997474|gb|MH447967.1|:35-154
-RYLSSAHGGGSASQPPSCAVTACRWPWRGRGCRAGVWNQP
->MH011443.1:3-122
-SLSEQRSWWGQRLTTSVMCCDCL*MATARTRVPGGGVEST
->MH011443.1:3-122_alignment_gi|1528997474|gb|MH447967.1|:36-155
-SLSEQRSWWGQRLTTSVMCCDCL*MA ARTRVPGGGVEST
->gi|1528997474|gb|MH447967.1|:36-155
-SLSEQRSWWGQRLTTSVMCCDCL*MAMARTRVPGGGVEST
->MH011443.1:3-86
-G*FHTPARHPRPRRGHLQAVTAHDGGCE
->MH011443.1:3-86_alignment_gi|1528997474|gb|MH447967.1|:36-119
-G*FHTPARHPRPR GHLQAVTAHDGGCE
->gi|1528997474|gb|MH447967.1|:36-119
-G*FHTPARHPRPRHGHLQAVTAHDGGCE
->MH011443.1:80-121
-L*GAAPTMSAAQIA
->MH011443.1:80-121_alignment_gi|1528997474|gb|MH447967.1|:113-154
-L*GAAPTMSAAQIA
->gi|1528997474|gb|MH447967.1|:113-154
-L*GAAPTMSAAQIA

data/spec/sequences/MH011443_1_sp_P04637_P53_HUMAN.txt

@@ -1,6 +0,0 @@
->MH011443.1:1-124
-WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
->MH011443.1:1-124_alignment_sp|P04637|P53_HUMAN:146-186
-WVDSTPPPGTRVRA+AIYKQSQHMTEVVRRCPHHERCSDSD
->sp|P04637|P53_HUMAN:146-186
-WVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD

data/spec/sequences/Nucleotide_TP53_COX41.fasta

@@ -1,15 +0,0 @@
->MH011443.1 Homo sapiens TP53 (TP53) gene, exon 5 and partial cds
-TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACA
-TGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
->NM_001861.5 Homo sapiens cytochrome c oxidase subunit 4I1 (COX4I1), transcript variant 1, mRNA
-CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTAC
-CAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTT
-GTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCC
-ATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTC
-CATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCG
-AACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGC
-AGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAG
-GATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGG
-AAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCC
-TATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAACCC
-TTTGTGATCAGTTCTTTAATGATACCTAAATGAAAGCTAATTAAAACAA

data/spec/sequences/Protein_TP53_COX41.fasta

@@ -1,12 +0,0 @@
->sp|P04637|P53_HUMAN Cellular tumor antigen p53 OS=Homo sapiens OX=9606 GN=TP53 PE=1 SV=4
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGP
-DEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAK
-SVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHE
-RCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNS
-SCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELP
-PGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPG
-GSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P13073|COX41_HUMAN Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Homo sapiens OX=9606 GN=COX4I1 PE=1 SV=1
-MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQK
-ALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMW
-QKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK

data/spec/sequences/Query_1_SI2_2_0_06267.txt

@@ -1,6 +0,0 @@
->Query_1:1-199
-MNTLWLSLWDYPGKLPLNFMVFDTKDDLQAAYWRDPYSIPLAVIFEDPQPISQRLIYEIRTNPSYTLPPPPTKLYSAPISCRKNKTGHWMDDILSIKTGESCPVNNYLHSGFLALQMITDITKIKLENSDVTIPDIKLIMFPKEPYTADWMLAFRVVIPLYMVLALSQFITYLLILIVGEKENKIKEGMKMMGLNDSVF
->Query_1:1-199_alignment_SI2.2.0_06267:1-199
-MNTLWLSLWDYPGKLPLNFMVFDTKDDLQAAYWRDPYSIPLAVIFEDPQPISQRLIYEIRTNPSYTLPPPPTKLYSAPISCRKNKTGHWMDDILSIKTGESCPVNNYLHSGFLALQMITDITKIKLENSDVTIPDIKLIMFPKEPYTADWMLAFRVVIPLYMVLALSQFITYLLILIVGEKENKIKEGMKMMGLNDSVF
->SI2.2.0_06267:1-199
-MNTLWLSLWDYPGKLPLNFMVFDTKDDLQAAYWRDPYSIPLAVIFEDPQPISQRLIYEIRTNPSYTLPPPPTKLYSAPISCRKNKTGHWMDDILSIKTGESCPVNNYLHSGFLALQMITDITKIKLENSDVTIPDIKLIMFPKEPYTADWMLAFRVVIPLYMVLALSQFITYLLILIVGEKENKIKEGMKMMGLNDSVF

data/spec/sequences/alignment-2_hits.txt

@@ -1,12 +0,0 @@
->Query_1:1-199
-MNTLWLSLWDYPGKLPLNFMVFDTKDDLQAAYWRDPYSIPLAVIFEDPQPISQRLIYEIRTNPSYTLPPPPTKLYSAPISCRKNKTGHWMDDILSIKTGESCPVNNYLHSGFLALQMITDITKIKLENSDVTIPDIKLIMFPKEPYTADWMLAFRVVIPLYMVLALSQFITYLLILIVGEKENKIKEGMKMMGLNDSVF
->Query_1:1-199_alignment_SI2.2.0_06267:1-199
-MNTLWLSLWDYPGKLPLNFMVFDTKDDLQAAYWRDPYSIPLAVIFEDPQPISQRLIYEIRTNPSYTLPPPPTKLYSAPISCRKNKTGHWMDDILSIKTGESCPVNNYLHSGFLALQMITDITKIKLENSDVTIPDIKLIMFPKEPYTADWMLAFRVVIPLYMVLALSQFITYLLILIVGEKENKIKEGMKMMGLNDSVF
->SI2.2.0_06267:1-199
-MNTLWLSLWDYPGKLPLNFMVFDTKDDLQAAYWRDPYSIPLAVIFEDPQPISQRLIYEIRTNPSYTLPPPPTKLYSAPISCRKNKTGHWMDDILSIKTGESCPVNNYLHSGFLALQMITDITKIKLENSDVTIPDIKLIMFPKEPYTADWMLAFRVVIPLYMVLALSQFITYLLILIVGEKENKIKEGMKMMGLNDSVF
->SI2.2.0_13722:1-186
-MSANRLNVLVTLMLAVALLVTESGNAQVDGYLQFNPKRSAVSSPQKYCGKKLSNALQIICDGVYNSMFKKSGQDFPPQNKRHIAHRINGNEEESFTTLKSNFLNWCVEVYHRHYRFVFVSEMEMADYPLAYDISPYLPPFLSRARARGMLDGRFAGRRYRRESRGIHEECCINGCTINELTSYCGP
->SI2.2.0_13722:1-186_alignment_SI2.2.0_13722:1-186
-MSANRLNVLVTLMLAVALLVTESGNAQVDGYLQFNPKRSAVSSPQKYCGKKLSNALQIICDGVYNSMFKKSGQDFPPQNKRHIAHRINGNEEESFTTLKSNFLNWCVEVYHRHYRFVFVSEMEMADYPLAYDISPYLPPFLSRARARGMLDGRFAGRRYRRESRGIHEECCINGCTINELTSYCGP
->SI2.2.0_13722:1-186
-MSANRLNVLVTLMLAVALLVTESGNAQVDGYLQFNPKRSAVSSPQKYCGKKLSNALQIICDGVYNSMFKKSGQDFPPQNKRHIAHRINGNEEESFTTLKSNFLNWCVEVYHRHYRFVFVSEMEMADYPLAYDISPYLPPFLSRARARGMLDGRFAGRRYRRESRGIHEECCINGCTINELTSYCGP

data/spec/sequences/alignment-35_hits_diamond_blastp.txt

@@ -1,210 +0,0 @@
->sp|P04637|P53_HUMAN:1-394
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394_alignment_sp|P04637|P53_HUMAN:1-393
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-393
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394_alignment_sp|P56424|P53_MACMU:1-393
-MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDEAPRM EAAP  XXXXXXXXXXXXXXXXXXXXXXSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD
->sp|P56424|P53_MACMU:1-393
-MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTS-SSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394_alignment_sp|Q95330|P53_RABIT:1-391
-MEE QSD S+EPPLSQETFSDLWKLLPENN+L+   +  +DDL LS +D+  W  ED  P+E  R+P A  XXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTY G+YGFRLGFLHSGTAKSVTCTYSP LNK+FCQLAKTCPVQLWVDSTPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP  ELPPGS+KRALP  T+ SSPQ KKKPLDGEYF L+IRGRERFEMFRELNEALELKDAQA KEPGGSRAHSS+LK+KKGQSTSRHKK MFK EGPDSD
->sp|Q95330|P53_RABIT:1-391
-MEESQSDLSLEPPLSQETFSDLWKLLPENNLLTTSLNPPVDDL-LSAEDVANWLNED--PEEGLRVPAAPXXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYHGNYGFRLGFLHSGTAKSVTCTYSPCLNKLFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCPELPPGSSKRALPTTTTDSSPQTKKKPLDGEYFILKIRGRERFEMFRELNEALELKDAQAEKEPGGSRAHSSYLKAKKGQSTSRHKKPMFKREGPDSD
->sp|P04637|P53_HUMAN:1-394
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394_alignment_sp|Q8SPZ3|P53_DELLE:1-387
-MEE Q++  VEPPLSQETFSDLWKLLPENN+LS   S A+DDL+LSP+D+  W   D  PDEAP+MP     XXXXXXXXXXXXXXXXXXXXXXX VPSQKTY GSYGF LGFLHSGTAKSVTCTYSPALNK+FCQLAKTCPVQLWV S PPPGTRVRAMAIYK+S++MTEVVRRCPHHERCSD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLEDS+GNLLGRNSFEVRVCACPGRDRRTEEEN  KKG+   ELP GS KRALP  TSSSP  KKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPG SRAHSSHLKSKKGQS SRHKKLMFK EGPDSD
->sp|Q8SPZ3|P53_DELLE:1-387
-MEESQAELGVEPPLSQETFSDLWKLLPENNLLSSELSPAVDDLLLSPEDVANWL--DERPDEAPQMP-----XXXXXXXXXXXXXXXXXXXXXXXXVPSQKTYPGSYGFHLGFLHSGTAKSVTCTYSPALNKLFCQLAKTCPVQLWVSSPPPPGTRVRAMAIYKKSEYMTEVVRRCPHHERCSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDSNGNLLGRNSFEVRVCACPGRDRRTEEENFHKKGQSCPELPTGSAKRALPTGTSSSPPQKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGESRAHSSHLKSKKGQSPSRHKKLMFKREGPDSD
->sp|P04637|P53_HUMAN:1-394
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVL-SPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394_alignment_sp|Q9TUB2|P53_PIG:1-386
-MEE QS+  VEPPLSQETFSDLWKLLPENN+L S L   A++DL+LSP  +  W   D  PD+A R+P  AP    XXXXXXXXXXXXXXXXXXXX VPSQKTY GSY FRLGFLHSGTAKSVTCTYSPALNK+FCQLAKTCPVQLWV S PPPGTRVRAMAIYK+S++MTEVVRRCPHHER SD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLED+SGNLLGRNSFEVRVCACPGRDRRTEEEN  KKG+   E PPGSTKRALP +TSSSP  KKKPLDGEYFTLQIRGRERFEMFRELN+ALELKDAQ  +E G +RAHSSHLKSKKGQS SRHKK MFK EGPDSD
->sp|Q9TUB2|P53_PIG:1-386
-MEESQSELGVEPPLSQETFSDLWKLLPENNLLSSELSLAAVNDLLLSP--VTNWL--DENPDDASRVP--AP---PXXXXXXXXXXXXXXXXXXXXXVPSQKTYPGSYDFRLGFLHSGTAKSVTCTYSPALNKLFCQLAKTCPVQLWVSSPPPPGTRVRAMAIYKKSEYMTEVVRRCPHHERSSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDASGNLLGRNSFEVRVCACPGRDRRTEEENFLKKGQSCPEPPPGSTKRALPTSTSSSPVQKKKPLDGEYFTLQIRGRERFEMFRELNDALELKDAQTARESGENRAHSSHLKSKKGQSPSRHKKPMFKREGPDSD
->sp|P04637|P53_HUMAN:1-394
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394_alignment_sp|Q9WUR6|P53_CAVPO:1-391
-MEEP SD S+EPPLSQETFSDLWKLLPENNVLS   S  MD L+LSP+++  W  E+P  D    +  A  XXXXXXXXXXXXXXXXXXXXXX  SVPS K Y+GSYGF + FL SGTAKSVTCTYSP LNK+FCQLAKTCPVQ+WV+S PPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNL  EY+DDR TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSG LLGR+SFEVRVCACPGRDRRTEEEN RKKG    E  PG+ KRALP +TSSSPQPKKKPLD EYFTL+IRGR+ FE+ RE+NEALE KDAQ  KEPG SR HSS+ KSKKGQSTS HKKLMFK EG DSD
->sp|Q9WUR6|P53_CAVPO:1-391
-MEEPHSDLSIEPPLSQETFSDLWKLLPENNVLSDSLSPPMDHLLLSPEEVASWLGENPDGD--GHVSAAXXXXXXXXXXXXXXXXXXXXXXXXSSSVPSHKPYRGSYGFEVHFLKSGTAKSVTCTYSPGLNKLFCQLAKTCPVQVWVESPPPPGTRVRALAIYKKSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLHAEYVDDRTTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGKLLGRDSFEVRVCACPGRDRRTEEENFRKKGGLCPEPTPGNIKRALPTSTSSSPQPKKKPLDAEYFTLKIRGRKNFEILREINEALEFKDAQTEKEPGESRPHSSYPKSKKGQSTSCHKKLMFKREGLDSD
->sp|P04637|P53_HUMAN:1-394
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394_alignment_sp|P67939|P53_BOVIN:1-386
-MEE Q++ +VEPPLSQETFSDLW LLPENN+LS   S  +DDL L   D+  W   D  P+EAP+MP     XXXXXXXXXXXXXXXXXXXXXXX VPSQKTY G+YGFRLGFL SGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDS PPPGTRVRAMAIYK+ +HMTEVVRRCPHHER SD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYE PE+ S+CTTIHYN+MCNSSCMGGMNRRPILTIITLEDS GNLLGRNSFEVRVCACPGRDRRTEEENLRKKG+   E PP STKRALP NTSSSPQPKKKPLDGEYFTLQIRG +R+EMFRELN+ALELKDA  G+EPG SRAHSSHLKSKK  S S HKK M K EGPDSD
->sp|P67939|P53_BOVIN:1-386
-MEESQAELNVEPPLSQETFSDLWNLLPENNLLSSELSAPVDDL-LPYTDVATWL--DECPNEAPQMP-----XXXXXXXXXXXXXXXXXXXXXXXXVPSQKTYPGNYGFRLGFLQSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVVRRCPHHERSSDYSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYESPEIDSECTTIHYNFMCNSSCMGGMNRRPILTIITLEDSCGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGQSCPEPPPRSTKRALPTNTSSSPQPKKKPLDGEYFTLQIRGFKRYEMFRELNDALELKDALDGREPGESRAHSSHLKSKKRPSPSCHKKPMLKREGPDSD
->sp|P04637|P53_HUMAN:1-394
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLP-SQAMDDLMLSPDDIEQWFTEDPG----PDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394_alignment_sp|Q00366|P53_MESAU:1-396
-MEEPQSD S+E PLSQETFSDLWKLLP NNVLS LP S ++++L LS +++  W  EDPG                XXXXXXXXXXXXXXXXXXXXX   SVPS KTYQG YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWV STPPPGTRVRAMAIYK+ Q+MTEVVRRCPHHER S+ DGLAPPQHLIRVEGN+  EYLDD+ TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLED SGNLLGRNSFEVR+CACPGRDRRTEE+N +KKGEP  ELPP S KRALP NTSSSPQPK+K LDGEYFTL+IRG+ERF+MF+ELNEALELKDAQA K    S AHSS+LKSKKGQS SR KKLM K EGPDSD
->sp|Q00366|P53_MESAU:1-396
-MEEPQSDLSIELPLSQETFSDLWKLLPPNNVLSTLPSSDSIEELFLS-ENVAGWL-EDPGEALQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSSVPSYKTYQGDYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVSSTPPPGTRVRAMAIYKKLQYMTEVVRRCPHHERSSEGDGLAPPQHLIRVEGNMHAEYLDDKQTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDPSGNLLGRNSFEVRICACPGRDRRTEEKNFQKKGEPCPELPPKSAKRALPTNTSSSPQPKRKTLDGEYFTLKIRGQERFKMFQELNEALELKDAQALKASEDSGAHSSYLKSKKGQSASRLKKLMIKREGPDSD
->sp|P04637|P53_HUMAN:1-394
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPS---QAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394_alignment_sp|P10361|P53_RAT:1-391
-ME+ QSD S+E PLSQETFS LWKLLP +++L    +    +M+DL L P D+ +      GP+EA ++  A     XXXXXXXXXXXXXXXXX    SVPSQKTYQG+YGF LGFL SGTAKSV CTYS +LNK+FCQLAKTCPVQLWV STPPPGTRVRAMAIYK+SQHMTEVVRRCPHHERCSD DGLAPPQHLIRVEGN   EYLDDR TFRHSVVVPYEPPEVGSD TTIHY YMCNSSCMGGMNRRPILTIITLEDSSGNLLGR+SFEVRVCACPGRDRRTEEEN RKK E   ELPPGS KRALP +TSSSPQ KKKPLDGEYFTL+IRGRERFEMFRELNEALELKDA+A +E G SRAHSS+ K+KKGQSTSRHKK M K  GPDSD
->sp|P10361|P53_RAT:1-391
-MEDSQSDMSIELPLSQETFSCLWKLLPPDDILPTTATGSPNSMEDLFL-PQDVAELL---EGPEEALQV-SAPAAQEXXXXXXXXXXXXXXXXXPLSSSVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSISLNKLFCQLAKTCPVQLWVTSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDGDGLAPPQHLIRVEGNPYAEYLDDRQTFRHSVVVPYEPPEVGSDYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEENFRKKEEHCPELPPGSAKRALPTSTSSSPQQKKKPLDGEYFTLKIRGRERFEMFRELNEALELKDARAAEESGDSRAHSSYPKTKKGQSTSRHKKPMIKKVGPDSD
->sp|P04637|P53_HUMAN:1-394
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394_alignment_sp|P02340|P53_MOUSE:4-390
-MEE QSD S+E PLSQETFS LWKLLP  ++L P P   MDDL+L P D+E++F    GP EA R+  A      XXXXXXXXXXXXXXXXXX   VPSQKTYQG+YGF LGFL SGTAKSV CTYSP LNK+FCQLAKTCPVQLWV +TPP G+RVRAMAIYK+SQHMTEVVRRCPHHERCSD DGLAPPQHLIRVEGNL  EYL+DR TFRHSVVVPYEPPE GS+ TTIHY YMCNSSCMGGMNRRPILTIITLEDSSGNLLGR+SFEVRVCACPGRDRRTEEEN RKK     ELPPGS KRALP  TS+SP  KKKPLDGEYFTL+IRGR+RFEMFRELNEALELKDA A +E G SRAHSS+LK+KKGQSTSRHKK M K  GPDSD
->sp|P02340|P53_MOUSE:4-390
-MEESQSDISLELPLSQETFSGLWKLLPPEDIL-PSP-HCMDDLLL-PQDVEEFF---EGPSEALRVSGAPAAQDPXXXXXXXXXXXXXXXXXXSSFVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSPPLNKLFCQLAKTCPVQLWVSATPPAGSRVRAMAIYKKSQHMTEVVRRCPHHERCSDGDGLAPPQHLIRVEGNLYPEYLEDRQTFRHSVVVPYEPPEAGSEYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEENFRKKEVLCPELPPGSAKRALPTCTSASPPQKKKPLDGEYFTLKIRGRKRFEMFRELNEALELKDAHATEESGDSRAHSSYLKTKKGQSTSRHKKTMVKKVGPDSD
->sp|P04637|P53_HUMAN:1-394
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394_alignment_sp|Q29537|P53_CANLF:1-381
-MEE QS+ +++PPLSQETFS+LW LLPENNVLS     A+D+L+L P+ +  W  ED   D+APRMP  +                         SVPS KTY G+YGFRLGFLHSGTAKSVT TYSP LNK+FCQLAKTCPVQLWV S PPP T VRAMAIYK+S+ +TEVVRRCPHHERCSD SDGLAPPQHLIRVEGNLR +YLDDRNTFRHSVVVPYEPPEVGSD TTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGN+LGRNSFEVRVCACPGRDRRTEEEN  KKGEP  E                       PLDGEYFTLQIRGRER+EMFR LNEALELKDAQ+GKEPGGSRAHSSHLK+KKGQSTSRHKKLMFK EG DSD
->sp|Q29537|P53_CANLF:1-381
-MEESQSELNIDPPLSQETFSELWNLLPENNVLSSELCPAVDELLL-PESVVNWLDED--SDDAPRMPATS----------APTAPGPAPSWPLSSSVPSPKTYPGTYGFRLGFLHSGTAKSVTWTYSPLLNKLFCQLAKTCPVQLWVSSPPPPNTCVRAMAIYKKSEFVTEVVRRCPHHERCSDSSDGLAPPQHLIRVEGNLRAKYLDDRNTFRHSVVVPYEPPEVGSDYTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNVLGRNSFEVRVCACPGRDRRTEEENFHKKGEPCPEXXXXXXXXXXXXXXXXXXXXXXXPLDGEYFTLQIRGRERYEMFRNLNEALELKDAQSGKEPGGSRAHSSHLKAKKGQSTSRHKKLMFKREGLDSD
->sp|P04637|P53_HUMAN:1-394
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394_alignment_sp|P41685|P53_FELCA:1-386
-M+EP  + ++EPPLSQETFS+LW LLPENNVLS   S AM++L LS +D+  W   D  PD+A  M  A PXXXXXXXXXXXXXXXXXXXX     VPSQKTY G+YGF LGFL SGTAKSVTCTYSP LNK+FCQLAKTCPVQLWV S PPPGT VRAMAIYK+S+ MTEVVRRCPHHERC D SDGLAPPQHLIRVEGNL  +YLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPI+TIITLEDS+G LLGRNSFEVRVCACPGRDRRTEEEN RKKGEP  E                       PLDGEYFTLQIRGRERFEMFRELNEALELKDAQ+GKEPGGSRAHSSHLK+KKGQSTSRHKK M K EG DSD
->sp|P41685|P53_FELCA:1-386
-MQEPPLELTIEPPLSQETFSELWNLLPENNVLSSELSSAMNELPLS-EDVANWL--DEAPDDASGM-SAVPXXXXXXXXXXXXXXXXXXXXF----VPSQKTYPGAYGFHLGFLQSGTAKSVTCTYSPPLNKLFCQLAKTCPVQLWVRSPPPPGTCVRAMAIYKKSEFMTEVVRRCPHHERCPDSSDGLAPPQHLIRVEGNLHAKYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPIITIITLEDSNGKLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCPEXXXXXXXXXXXXXXXXXXXXXXXPLDGEYFTLQIRGRERFEMFRELNEALELKDAQSGKEPGGSRAHSSHLKAKKGQSTSRHKKPMLKREGLDSD
->sp|P04637|P53_HUMAN:1-394
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394_alignment_sp|P51664|P53_SHEEP:1-382
-MEE Q++  VEPPLSQETFSDLW LLPENN+LS   S  +DDL+   +D+  W   D  P+EAP+MPE                            VPSQKTY G+YGFRLGFLHSGTAKSVTCTYSP+LNK+FCQLAKTCPVQLWVDS PPPGTRVRAMAIYK+ +HMTEVVRR PHHER SD SDGLAPPQHLIRVEGNLR EY DDRNTFRHSVVVPYE PE+ S+CTTIHYN+MCNSSCMGGMNRRPILTIITLEDS GNLLGR+SFEVRVCACPGRDRRTEEEN RKKG+                           PLDGEYFTLQIRGR+RFEMFRELNEALEL DAQAG+EPG SRAHSSHLKSKKG S S HKK M K EGPDSD
->sp|P51664|P53_SHEEP:1-382
-MEESQAELGVEPPLSQETFSDLWNLLPENNLLSSELSAPVDDLLPYSEDVVTWL--DECPNEAPQMPEPPAQAALAPATSWPLSSF----------VPSQKTYPGNYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVVRRSPHHERSSDYSDGLAPPQHLIRVEGNLRAEYFDDRNTFRHSVVVPYESPEIESECTTIHYNFMCNSSCMGGMNRRPILTIITLEDSRGNLLGRSSFEVRVCACPGRDRRTEEENFRKKGQSCXXXXXXXXXXXXXXXXXXXXXXXXXPLDGEYFTLQIRGRKRFEMFRELNEALELMDAQAGREPGESRAHSSHLKSKKGPSPSCHKKPMLKREGPDSD
->sp|P04637|P53_HUMAN:39-330
-AMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFT
->sp|P04637|P53_HUMAN:39-330_alignment_sp|P79892|P53_HORSE:2-280
-A+++L+LSP D+  W   D GPDEAPRMP AAPXXXXXXXXXXXXXXX          VPSQKTY G YGFRLGFL+SGTAKSVTCTYSP LNK+FCQLAKTCPVQL V S PPPGTRVRAMAIYK+S+ MTEVVRRCPHHERCSD SDGLAPPQHLIRVEGNLR EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYN+MCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRR                                      PLDGEYFT
->sp|P79892|P53_HORSE:2-280
-AVNNLLLSP-DVVNWL--DEGPDEAPRMP-AAPXXXXXXXXXXXXXXXF---------VPSQKTYPGCYGFRLGFLNSGTAKSVTCTYSPTLNKLFCQLAKTCPVQLLVSSPPPPGTRVRAMAIYKKSEFMTEVVRRCPHHERCSDSSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLDGEYFT
->sp|P04637|P53_HUMAN:5-387
-QSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERC-SDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPL--DGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFK
->sp|P04637|P53_HUMAN:5-387_alignment_sp|P10360|P53_CHICK:4-364
-+ +P +EP    E F DLW +LP +    PL           P+D   W    P             XXXXXXXXXXXXXXXXXXXXXXXX VPS + Y G + FR+GF+ +GTAKSVTCTYSP LNK++C+LAK CPVQ+ V   PPPG+ +RA+A+YK+S+H+ EVVRRCPHHERC   +DGLAP QHLIRVEGN +  Y DD  T RHSVVVPYEPPEVGSDCTT+ YN+MCNSSCMGGMNRRPILTI+TLE   G LLGR  FEVRVCACPGRDR+ EEEN RK+G        G  KRA+   T +   PKK+ L  D E F LQ+RGR R+EM +E+NEAL+L  A+ G  P  S+     +   +G   S  KKL+ K
->sp|P10360|P53_CHICK:4-364
-EMEPLLEP---TEVFMDLWSMLPYSMQQLPL-----------PEDHSNWQELSPLEPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVPSTEDYGGDFDFRVGFVEAGTAKSVTCTYSPVLNKVYCRLAKPCPVQVRVGVAPPPGSSLRAVAVYKKSEHVAEVVRRCPHHERCGGGTDGLAPAQHLIRVEGNPQARYHDDETTKRHSVVVPYEPPEVGSDCTTVLYNFMCNSSCMGGMNRRPILTILTLEGPGGQLLGRRCFEVRVCACPGRDRKIEEENFRKRGG-----AGGVAKRAMSPPTEAPEPPKKRVLNPDNEIFYLQVRGRRRYEMLKEINEALQL--AEGGSAPRPSKGRRVKV---EGPQPSCGKKLLQK
->sp|P04637|P53_HUMAN:103-394
-YQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGS-TKRALPNNTSSS---PQPKKK----PLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTS---RHKKLMFKTEG-PDSD
->sp|P04637|P53_HUMAN:103-394_alignment_sp|P79734|P53_DANRE:71-373
-Y G +GFRL F  SGTAKSVTCTYSP LNK+FCQLAKTCPVQ+ VD  PP G+ VRA AIYK+S+H+ EVVRRCPHHER  D D LAP  HLIRVEGN R  Y +D  T RHSV VPYE P++G++ TT+  NYMCNSSCMGGMNRRPILTIITLE   G LLGR SFEVRVCACPGRDR+TEE N +K  E        + TKR+L   +SS+   P+  KK      D E FTLQ+RGRER+E+ ++LN++LEL D     +    R        K+ + +S   + KKLM K EG  DSD
->sp|P79734|P53_DANRE:71-373
-YPGDHGFRLRFPQSGTAKSVTCTYSPDLNKLFCQLAKTCPVQMVVDVAPPQGSVVRATAIYKKSEHVAEVVRRCPHHERTPDGDNLAPAGHLIRVEGNQRANYREDNITLRHSVFVPYEAPQLGAEWTTVLLNYMCNSSCMGGMNRRPILTIITLETQEGQLLGRRSFEVRVCACPGRDRKTEESNFKKDQETKTMAKTTTGTKRSLVKESSSATLRPEGSKKAKGSSSDEEIFTLQVRGRERYEILKKLNDSLELSDVVPASDAEKYRQKFMTKNKKENRESSEPKQGKKLMVKDEGRSDSD
->sp|P04637|P53_HUMAN:96-394
-SVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSD-SDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRAL---PNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDA--QAGKEPGGSRAHSSHLKSKKGQST---SRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:96-394_alignment_sp|O93379|P53_ICTPU:71-376
-+VP    Y G   F L F  S   KSVTCTYSP LNK+FCQLAKTCPV + V S+PPPG+ +RA A+YK+S+H+ EVVRRCPHHER +D SDG APP HL+RVEGN R  Y +D NT  HSVVVPYEPP+VGS  TT+ YNYMCNSSCMGGMNRRPILTIITLE   G+LLGR +FEVRVCACPGRDR+TEE N +K+ EP        TKR++   P++  +S + K    D E +TLQ+RG+ER+E  +++N+ LEL D    A +E    +  S   + ++  +     R KK + K E  DSD
->sp|O93379|P53_ICTPU:71-376
-TVPVTSDYPGLLNFTLHFQESSGTKSVTCTYSPDLNKLFCQLAKTCPVLMAVSSSPPPGSVLRATAVYKRSEHVAEVVRRCPHHERSNDSSDGPAPPGHLLRVEGNSRAVYQEDGNTQAHSVVVPYEPPQVGSQSTTVLYNYMCNSSCMGGMNRRPILTIITLETQDGHLLGRRTFEVRVCACPGRDRKTEESNFKKQQEPKTS-GKTLTKRSMKDPPSHPEASKKSKNSSSDDEIYTLQVRGKERYEFLKKINDGLELSDVVPPADQEKYRQKLLSKTCRKERDGAAGEPKRGKKRLVKEEKCDSD
->sp|P04637|P53_HUMAN:97-353
-VPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHE--RCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPP--GSTKRALPNNTSSSPQ-----PKKKPLDGEYFTLQIRGRERFEMFRELNEALELKD
->sp|P04637|P53_HUMAN:97-353_alignment_sp|O15350|P73_HUMAN:115-379
-+PS   Y G + F + F  S TAKS T TYSP L K++CQ+AKTCP+Q+ V + PPPGT +RAM +YK+++H+T+VV+RCP+HE  R  +    AP  HLIRVEGN   +Y+DD  T R SVVVPYEPP+VG++ TTI YN+MCNSSC+GGMNRRPIL IITLE   G +LGR SFE R+CACPGRDR+ +E++ R++   +        ++KRA   +  + P       K++  D + + LQ+RGRE FE+  +L E+LEL +
->sp|O15350|P73_HUMAN:115-379
-IPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMRDGQVLGRRSFEGRICACPGRDRKADEDHYREQQALNESSAKNGAASKRAFKQSPPAVPALGAGVKKRRHGDEDTYYLQVRGRENFEILMKLKESLELME
->sp|P04637|P53_HUMAN:97-353
-VPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHE--RCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPP--GSTKRALPNNTSSSPQ-----PKKKPLDGEYFTLQIRGRERFEMFRELNEALELKD
->sp|P04637|P53_HUMAN:97-353_alignment_sp|Q9JJP2|P73_MOUSE:107-371
-+PS   Y G + F + F  S TAKS T TYSP L K++CQ+AKTCP+Q+ V + PPPGT +RAM +YK+++H+T++V+RCP+HE  R  +    AP  HLIRVEGN   +Y+DD  T R SVVVPYEPP+VG++ TTI YN+MCNSSC+GGMNRRPIL IITLE   G +LGR SFE R+CACPGRDR+ +E++ R++   +        ++KRA   +  + P       K++  D + F + +RGRE FE+  ++ E+LEL +
->sp|Q9JJP2|P73_MOUSE:107-371
-IPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDIVKRCPNHELGRDFNEGQSAPASHLIRVEGNNLAQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILVIITLETRDGQVLGRRSFEGRICACPGRDRKADEDHYREQQALNESTTKNGAASKRAFKQSPPAIPALGTNVKKRRHGDEDMFYMHVRGRENFEILMKVKESLELME
->sp|P04637|P53_HUMAN:96-351
-SVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHE--RCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNT---SSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALEL
->sp|P04637|P53_HUMAN:96-351_alignment_sp|Q9H3D4|P63_HUMAN:164-423
-++PS   Y G + F + F  S TAKS T TYS  L K++CQ+AKTCP+Q+ V + PP G  +RAM +YK+++H+TEVV+RCP+HE  R  +   +APP HLIRVEGN   +Y++D  T R SV+VPYEPP+VG++ TT+ YN+MCNSSC+GGMNRRPIL I+TLE   G +LGR  FE R+CACPGRDR+ +E+++RK+           TKR    NT     +   K++  D E   L +RGRE +EM  ++ E+LEL
->sp|Q9H3D4|P63_HUMAN:164-423
-AIPSNTDYPGPHSFDVSFQQSSTAKSATWTYSTELKKLYCQIAKTCPIQIKVMTPPPQGAVIRAMPVYKKAEHVTEVVKRCPNHELSREFNEGQIAPPSHLIRVEGNSHAQYVEDPITGRQSVLVPYEPPQVGTEFTTVLYNFMCNSSCVGGMNRRPILIIVTLETRDGQVLGRRCFEARICACPGRDRKADEDSIRKQQVSDSTKNGDGTKRPFRQNTHGIQMTSIKKRRSPDDELLYLPVRGRETYEMLLKIKESLEL
->sp|P04637|P53_HUMAN:96-351
-SVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHE--RCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNT---SSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALEL
->sp|P04637|P53_HUMAN:96-351_alignment_sp|Q9JJP6|P63_RAT:164-423
-++PS   Y G + F + F  S TAKS T TYS  L K++CQ+AKTCP+Q+ V + PP G  +RAM +YK+++H+TEVV+RCP+HE  R  +   +APP HLIRVEGN   +Y++D  T R SV+VPYEPP+VG++ TT+ YN+MCNSSC+GGMNRRPIL I+TLE   G +LGR  FE R+CACPGRDR+ +E+++RK+           TKR    NT     +   K++  D E   L +RGRE +EM  ++ E+LEL
->sp|Q9JJP6|P63_RAT:164-423
-AIPSNTDYPGPHSFDVSFQQSSTAKSATWTYSTELKKLYCQIAKTCPIQIKVMTPPPQGAVIRAMPVYKKAEHVTEVVKRCPNHELSREFNEGQIAPPSHLIRVEGNSHAQYVEDPITGRQSVLVPYEPPQVGTEFTTVLYNFMCNSSCVGGMNRRPILIIVTLETRDGQVLGRRCFEARICACPGRDRKADEDSIRKQQVSDSAKNGDGTKRPFRQNTHGIQMTSIKKRRSPDDELLYLPVRGRETYEMLLKIKESLEL
->sp|P04637|P53_HUMAN:96-351
-SVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHE--RCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNT---SSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALEL
->sp|P04637|P53_HUMAN:96-351_alignment_sp|O88898|P63_MOUSE:164-423
-++PS   Y G + F + F  S TAKS T TYS  L K++CQ+AKTCP+Q+ V + PP G  +RAM +YK+++H+TEVV+RCP+HE  R  +   +APP HLIRVEGN   +Y++D  T R SV+VPYEPP+VG++ TT+ YN+MCNSSC+GGMNRRPIL I+TLE   G +LGR  FE R+CACPGRDR+ +E+++RK+           TKR    NT     +   K++  D E   L +RGRE +EM  ++ E+LEL
->sp|O88898|P63_MOUSE:164-423
-AIPSNTDYPGPHSFDVSFQQSSTAKSATWTYSTELKKLYCQIAKTCPIQIKVMTPPPQGAVIRAMPVYKKAEHVTEVVKRCPNHELSREFNEGQIAPPSHLIRVEGNSHAQYVEDPITGRQSVLVPYEPPQVGTEFTTVLYNFMCNSSCVGGMNRRPILIIVTLETRDGQVLGRRCFEARICACPGRDRKADEDSIRKQQVSDSAKNGDGTKRPFRQNTHGIQMTSIKKRRSPDDELLYLPVRGRETYEMLLKIKESLEL
->sp|P04637|P53_HUMAN:13-379
-PLSQETFSDLWK---LLPENNVLSP---LPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTS
->sp|P04637|P53_HUMAN:13-379_alignment_sp|Q92143|P53_XIPMA:9-341
-PLSQ+TF DLW    L  EN  L P   L SQ MD            F EDP   +  +    AP                        +VP+   Y G +GF L F  SGTAKSVT TYS  L K+FCQLAKT P+ + V   PP G  +RA A+YK+++H+ EVV+RCPHH+    SD      HLIRVEG+   +Y +D NT RHSV VPYE P++GS+ TTI  ++MCNSSCMGGMNRRPILTI+TLE + G +LGR  FEVRVCACPGRDR+TEE NL K G    +                                 IRGR R+  F+ LN+ LEL D    K      A SS  +  KG S S
->sp|Q92143|P53_XIPMA:9-341
-PLSQDTFHDLWNNVFLSTENESLPPPEGLLSQNMD------------FWEDPETMQETKNVPTAP------------------------TVPAISNYAGEHGFNLEFNDSGTAKSVTSTYSVKLGKLFCQLAKTTPIGVLVKEEPPQGAVIRATAVYKKTEHVGEVVKRCPHHQSEDLSDN---KSHLIRVEGSQLAQYFEDPNTRRHSVTVPYERPQLGSEMTTILLSFMCNSSCMGGMNRRPILTILTLETTEGEVLGRRCFEVRVCACPGRDRKTEEGNLEKSGTKQTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIRGRNRYLWFKSLNDGLELMDKTGPKIKQEIPAPSSGKRLLKGGSDS
->sp|P04637|P53_HUMAN:96-372
-SVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQA---GKEPGGSRAHSSHLKS
->sp|P04637|P53_HUMAN:96-372_alignment_sp|P79820|P53_ORYLA:81-351
-+VP    Y GSY   L F  SGTAKSVT TYS  LNK++CQLAKT P+++ V   PP G  +RA A+YK+++H+ +VVRRCPHH+   + D +    HLIRVEG+   +Y +D  T R SV VPYEPP+ GS+ TTI  +YMCNSSCMGGMNRRPILTI+TLE + G +LGR  FEVR+CACPGRDR+TE                                   +    E F  ++ GRER+E  +++N+ LEL + ++    K+ G   +    LKS
->sp|P79820|P53_ORYLA:81-351
-TVPVTTDYPGSYELELRFQKSGTAKSVTSTYSETLNKLYCQLAKTSPIEVRVSKEPPKGAILRATAVYKKTEHVADVVRRCPHHQ---NEDSVEHRSHLIRVEGSQLAQYFEDPYTKRQSVTVPYEPPQPGSEMTTILLSYMCNSSCMGGMNRRPILTILTLE-TEGLVLGRRCFEVRICACPGRDRKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR----EVFHFEVYGRERYEFLKKINDGLELLEKESKSKNKDSGMVPSSGKKLKS
->sp|P13073|COX41_HUMAN:1-170
-MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|P13073|COX41_HUMAN:1-170_alignment_sp|P13073|COX41_HUMAN:1-169
-MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|P13073|COX41_HUMAN:1-169
-MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|P13073|COX41_HUMAN:1-170
-MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|P13073|COX41_HUMAN:1-170_alignment_sp|P00423|COX41_BOVIN:1-169
-MLATRVFSL+G+RAISTSVCVRAH SVVKSED++LP+Y+DRRD+PLP+VAHVK+LSASQKALKEKEKASWSSLS+DEKVELYR+KFKESFAEMNR +NEWKTVVG AMFFIGFTAL+++W+KHYVYGP+P +F++EWVAKQTKRMLDMKV PIQG ++KWDY+KNEWKK
->sp|P00423|COX41_BOVIN:1-169
-MLATRVFSLIGRRAISTSVCVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK
->sp|P13073|COX41_HUMAN:26-170
-SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|P13073|COX41_HUMAN:26-170_alignment_sp|O46577|COX41_PANTR:1-144
-SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|O46577|COX41_PANTR:1-144
-SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|P13073|COX41_HUMAN:26-170
-SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|P13073|COX41_HUMAN:26-170_alignment_sp|O46578|COX41_GORGO:1-144
-SVVKSEDFSLPAYMDRRD+PLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|O46578|COX41_GORGO:1-144
-SVVKSEDFSLPAYMDRRDYPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|P13073|COX41_HUMAN:1-170
-MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|P13073|COX41_HUMAN:1-170_alignment_sp|P10888|COX41_RAT:1-169
-MLATR  SL+GKRAISTSVC+RAH SVVKSED++LP+Y+DRRD+PLP+VAHVK LSASQKALKEKEKA WSSLS DEKV+LYRI+F ESFAEMN+G+NEWKTVVG AMFFIGFTALV++W+K YVYGP+P +FD++WVA QTKRMLDMKVNPIQG ++KWDY KNEWKK
->sp|P10888|COX41_RAT:1-169
-MLATRALSLIGKRAISTSVCLRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKLLSASQKALKEKEKADWSSLSRDEKVQLYRIQFNESFAEMNKGTNEWKTVVGLAMFFIGFTALVLIWEKSYVYGPIPHTFDRDWVAMQTKRMLDMKVNPIQGFSAKWDYNKNEWKK
->sp|P13073|COX41_HUMAN:1-170
-MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|P13073|COX41_HUMAN:1-170_alignment_sp|P19783|COX41_MOUSE:1-169
-MLA+R  SL+GKRAISTSVC+RAH SVVKSED++ P Y DRRD+PLP+VAHV  LSASQKALKEKEKA WSSLS DEKV+LYRI+F ESFAEMNRG+NEWKTVVG AMFFIGFTALV++W+K YVYGP+P +FD++WVA QTKRMLDMK NPIQG ++KWDY+KNEWKK
->sp|P19783|COX41_MOUSE:1-169
-MLASRALSLIGKRAISTSVCLRAHGSVVKSEDYAFPTYADRRDYPLPDVAHVTMLSASQKALKEKEKADWSSLSRDEKVQLYRIQFNESFAEMNRGTNEWKTVVGMAMFFIGFTALVLIWEKSYVYGPIPHTFDRDWVAMQTKRMLDMKANPIQGFSAKWDYDKNEWKK
->sp|P13073|COX41_HUMAN:1-170
-MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|P13073|COX41_HUMAN:1-170_alignment_sp|Q9TTT8|COX41_RABIT:1-169
-ML TR+ S  G RAISTS C+RAH SVVKSED++LP+Y+DRRD+PLP+VAHVK LSA QKALKEKEKA W SL+ DEKVELYRI+F ESFAEMNRG+NEWKTVVG A+FFIGFTAL+++W+KHYVYGP+P +FDKEWVA QTKRMLDMKV+PIQG ++KWDY KNEW+K
->sp|Q9TTT8|COX41_RABIT:1-169
-MLPTRLLSFSGSRAISTSFCLRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKQLSAGQKALKEKEKAPWGSLTRDEKVELYRIQFNESFAEMNRGTNEWKTVVGTALFFIGFTALILIWEKHYVYGPIPHTFDKEWVAMQTKRMLDMKVSPIQGFSAKWDYNKNEWRK
->sp|P13073|COX41_HUMAN:41-170
-RRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|P13073|COX41_HUMAN:41-170_alignment_sp|Q96KJ9|COX42_HUMAN:43-171
-+R +P+PE      L+A ++ALKEKEK SW+ L+  EKV LYR++F E+FAEMNR SNEWKTV+G   FFIGF ALVI WQ+ YV+ P P +   E  A+Q +RMLDMKVNP+QGLAS+WDYEK +WKK
->sp|Q96KJ9|COX42_HUMAN:43-171
-QRYYPMPEEPFCTELNAEEQALKEKEKGSWTQLTHAEKVALYRLQFNETFAEMNRRSNEWKTVMGCVFFFIGFAALVIWWQRVYVFPPKPITLTDERKAQQLQRMLDMKVNPVQGLASRWDYEKKQWKK
->sp|P13073|COX41_HUMAN:1-98
-MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGS
->sp|P13073|COX41_HUMAN:1-98_alignment_sp|Q95283|COX41_PIG:1-97
-MLATRVF+L+G+RAISTSVCVRAH S VKSED++LP Y+DRRD+PLP+VAHVK+LSASQKA KEKEKASWSSLSMDEKVELYR+KF ESFAEMNR +
->sp|Q95283|COX41_PIG:1-97
-MLATRVFNLIGRRAISTSVCVRAHGSXVKSEDYALPVYVDRRDYPLPDVAHVKNLSASQKAXKEKEKASWSSLSMDEKVELYRLKFNESFAEMNRST
->sp|P13073|COX41_HUMAN:26-170
-SVVKSEDFSLPAYMD---RRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|P13073|COX41_HUMAN:26-170_alignment_sp|Q91Y94|COX42_RAT:26-172
-S   S    +  Y+D   +R +P+P+  +   LS  Q+ALKEKEK SW+ LS  EKV LYR++F E+FAEMN  SNEWKTV+G   FFIGFTALVI WQ+ YV+     +  +E  A+Q +R+LDMK NPIQGL++ WDYEK EWKK
->sp|Q91Y94|COX42_RAT:26-172
-SAASSSQRRMTPYVDCYAQRSYPMPDEPYCTELSEEQRALKEKEKGSWAQLSQAEKVALYRLQFHETFAEMNHRSNEWKTVMGCVFFFIGFTALVIWWQRVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLSAHWDYEKKEWKK
->sp|P13073|COX41_HUMAN:41-170
-RRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
->sp|P13073|COX41_HUMAN:41-170_alignment_sp|Q91W29|COX42_MOUSE:44-172
-+R +P+P+      LS  Q+ALKEKEK SW+ LS  EKV LYR++F E+FAEMN  SNEWKTV+G   FFIGFTALVI WQ+ YV+     +  +E  A+Q +R+LDMK NPIQGLA+ WDYEK EWKK
->sp|Q91W29|COX42_MOUSE:44-172
-QRSYPMPDEPFCTELSEEQRALKEKEKGSWTQLSQAEKVALYRLQFHETFAEMNHRSNEWKTVMGCVFFFIGFTALVIWWQRVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLAAHWDYEKKEWKK