sequenceserver 2.0.0.rc3 → 2.0.0.rc8

data/spec/sequences/nucleotide_query.fa

@@ -1,21 +0,0 @@
-ATGAATACCCTCTGGCTCTCTTTATGGGATTATCCCGGTAAGCTTCCCTTAAACTTCATG
-GTGTTTGACACGAAGGATGATCTGCAAGCAGCGTATTGGAGAGATCCTTACAGCATACCT
-CTGGCAGTTATCTTCGAGGACCCCCAACCGATATCACAGCGACTTATATATGAAATTAGG
-ACGAATCCTTCATACACTTTGCCGCCACCGCCAACCAAATTGTATTCTGCTCCGATCAGT
-TGTCGAAAGAATAAAACTGGTCACTGGATGGACGACATTTTATCGATAAAAACCGGTGAA
-TCTTGTCCCGTTAACAATTACTTGCATTCTGGCTTCTTGGCTCTGCAAATGATAACGGAT
-ATCACAAAGATAAAATTGGAAAATTCTGACGTGACAATACCGGATATTAAACTCATAATG
-TTTCCTAAAGAGCCGTATACCGCTGACTGGATGCTGGCCTTCAGAGTTGTTATTCCGCTT
-TACATGGTCTTGGCTCTCTCGCAATTTATCACTTATCTTCTGATCCTAATAGTTGGCGAG
-AAGGAAAATAAGATTAAAGAGGGAATGAAGATGATGGGCTTAAATGATTCTGTGTTT
->SI2.2.0_13722 Si_gnF.scaffold06207[1925625..1928536].pep_1
-ATGTCCGCGAATCGATTGAACGTGCTGGTGACCCTGATGCTCGCCGTCGCGCTTCTTGTG
-ACGGAATCAGGAAATGCACAGGTGGATGGCTATCTCCAATTCAACCCAAAGCGATCCGCC
-GTGAGCTCGCCGCAGAAGTATTGCGGCAAAAAGCTTTCTAATGCTCTACAGATAATCTGT
-GATGGCGTGTACAATTCCATGTTTAAGAAGAGTGGTCAAGATTTTCCCCCGCAAAATAAG
-AGACACATAGCACACAGAATAAATGGGAATGAGGAAGAGAGCTTTACTACGTTAAAGTCG
-AATTTTTTAAACTGGTGTGTTGAAGTTTATCATCGTCACTACAGATTCGTTTTTGTTTCA
-GAGATGGAAATGGCCGATTACCCGCTCGCCTATGATATTTCCCCGTATCTTCCGCCGTTC
-CTGTCGCGAGCGAGGGCACGGGGAATGTTAGACGGTCGCTTCGCCGGCAGACGCTACCGA
-AGGGAGTCGCGGGGCATTCACGAGGAGTGTTGCATCAACGGATGTACGATAAACGAATTG
-ACCAGCTACTGCGGCCCC

data/spec/sequences/problematic_query.fa

@@ -1,5 +0,0 @@
->PB10005-PA maker-pbar_scf7180000346129-snap-gene-0.2-mRNA-1 protein AED:0.0281413612565444 QI:53|1|0.5|1|1|1|4|-1|223
-MKQLACILIALAIVGVYGEDPEKLVNGYPVNIEDNPQCVSIQVRGSHFCGGSIISDRYIL
-TAGHCVDGLNPYRLPSAVVVTGTSRLSSGGQSFKIKRMVLHENYNARTMDGYDIGLIELA
-TPIQFNARQRPVCLTTRRAAQNDPVKITAWGSTGYRQNVHDDLRQLTAVVMPPNVCRPYH
-QRIMSINEKEFCTLIRSGTGACNGDSGSGVVRTTDGCIIGLVS

data/spec/sequences/protein_query.fa

@@ -1,9 +0,0 @@
-MNTLWLSLWDYPGKLPLNFMVFDTKDDLQAAYWRDPYSIPLAVIFEDPQPISQRLIYEIR
-TNPSYTLPPPPTKLYSAPISCRKNKTGHWMDDILSIKTGESCPVNNYLHSGFLALQMITD
-ITKIKLENSDVTIPDIKLIMFPKEPYTADWMLAFRVVIPLYMVLALSQFITYLLILIVGE
-KENKIKEGMKMMGLNDSVF
->SI2.2.0_13722 locus=Si_gnF.scaffold06207[1925625..1928536].pep_1 quality=100.00
-MSANRLNVLVTLMLAVALLVTESGNAQVDGYLQFNPKRSAVSSPQKYCGKKLSNALQIIC
-DGVYNSMFKKSGQDFPPQNKRHIAHRINGNEEESFTTLKSNFLNWCVEVYHRHYRFVFVS
-EMEMADYPLAYDISPYLPPFLSRARARGMLDGRFAGRRYRRESRGIHEECCINGCTINEL
-TSYCGP

data/spec/sequences/sample_query_fire_ant_obps.fa

@@ -1,44 +0,0 @@
->SiOBP1-mRNA [organism=Solenopsis invicta]
-ATGCACGTGTCGGTGATTCTCGGCGTAGTGTTGCTACAGGCGATTTACGTGTCCGCCGCGCCACCCGACTGGATACCCCCGGAAATGTTGGAGATGGTTCAAGGTGACAAGGAGCGATGCATGGCCGAACACGGAACGAGTCAAGCGCTTATTGACGAAGTTAACGATGGGAAACTCTCGAATGACCGGTCTATCACGTGCTACATGAACTGCCTTCTCGACGCCTTCAGTTTGGTCGATGAAGACGGTAATTTGGAAGCTGAGATGCTGATAAGTGTTATCCCGGAAGAATTTCAAGAGATAGGTAACAAGATTTTGAACAAATGCGCCGTACAAGACGGCGCGGATAAATGCGAAAAGATCTACAATGTGGCGAAATGCGTCCAAGGAACAGTACCAGAGCTGTGGTTTATGGTTTAA
->SiOBP2-mRNA [organism=Solenopsis invicta]
-ATGGAGAAGGTCGCGTTTTTCGTTTTAGCACTCATTGCTGTCGTAGTTGCAAATGAGATTGTAGAAGAGATGGCAAAGAAATTCGAGACCGATTCAGCAACAGTACAGAAATGTCTGGATGACACTGGAATTACGATGGAGGAATTAGGTACTTCATTGAAAGAGTGGGCCGAATTAAAGGACGAAGATATCAATGAAATGACTAAACAATCTCTTATGAAATACGTTAATTTCCTGGCTTGTATGATGGAGAAGAATGAAATGATGATCGATTCGAAATTGGTTGTTGACAAAATCGTTGAAAGTGCTCAAAATGACAAGGATCTCTTACCACCTGTACCAAAGGAAGTTCTAACGGAATGCCTGACTGCATTGAACGAAAATAGCGAAATATCTCGAGAAGACAGAGTCTTTGGTTTAATGTTTTGCATGATGGATGGTCAAACGGACAAAAAATAA
->SiOBP3-mRNA [organism=Solenopsis invicta]
-ATGAAGACGTTCGTATTGCATATTTTTATTTTTGCTCTCGTGGCTTTCGCTTCTGCATCTCGTGATAGCGCGAGGAAGATAGGATCCCAATATGACAATTACGCGACTTGCTTAGCCGAACATAGTCTAACAGAGGATGACATCTTCTCGATTGGTGAAGTATCAAGTGGCCAGCACAAAACCAATCATGAAGATACCGAACTACACAAAAATGGTTGCGTCATGCAATGTTTGTTAGAAAAAGATGGACTGATGTCTGGAGCTGATTATGATGAAGAGAAAATGCGTGAGGACTATATCAAGGAAACAGGTGCTCAACCAGGAGATCAAAGGATAGAAGCTCTGAATGCCTGCATGCAAGAAACAAAAGaCATGGAGGATAAATGTGACAAAAGCTTGCTCCTTGTAGCATGTGTCTTAGCAGCTGAAGCTGTGCTCGCCGATTCTAACGAAGGAGCATAA
->SiOBP4-mRNA [organism=Solenopsis invicta]
-ATGAAAACGCTCGTATTTCATATTTTCATTTTTGCTCTCATAGCTTTTGCCTCTGCATCTTGTAATAGCGCAAAGAAGATAGGATCCCACTATGACCATTACCAAACTTGCTTAACCGAACTTGGTGTAACAGAGGATGAGCTCTTCTCGGTTGGTGAAGTAACAAATGGCCAGCACAAAACCAAGCATGAAGATACCAAACAACACAAGAATGGTTGCATCATGCAATGTGTGTTTGAAAAATTGGGACTAATGATTGGAGCGGATTTTGATGAAGAGAAAATGCGTGAGTATTATATTAAGGAAAAAGGTCTTCAACCAGGAGATCAAAGAATAGATTTTCTGAGTAGCTGCATGGAACAAACAAAAAACATGGAAGATAAATGTGACAAAAGCTTGGGCTTTATAGGATGTGTCTTAATGAACGAAGTTAGTCTCCCCGCTTCTAACGAAGAAGCATGA
->SiOBP5-mRNA [organism=Solenopsis invicta]
-ATGTGCGCGCGTTTACTAATCTGCATGATTACAATTGCGCTATTCGCAGTACATCAAACAAATGCTGCAATGACAATGGAACAAATTGAAAAAACCGCGCTAAACGTGCGAAATACGTGTACGTCGAAATCTCATGCAGACCCTGGAGCTGTCGCAGGAATACAAAATGGCGTATTTCCAGATGACAATAAACCTTTGAAATGCTATACACTATGTGTAATGAAGACAATGCGAACTTTCAAAAATGGACGCATAGATGACGGTATGATGATTAAaCAAGTGGATCTAATGTTGCCAGCTGAAATGGCGGGTCCTTTGAAAGCAGTTGCGACTAAATGCGCAGCAGAACCACCTACTGGCGATGATTGCTCAACCACTTATCAGTTTGTGAAATGTAGTTATTCCACGGATCCAGATCACTTCTTCTTTCCTTAA
->SiOBP6-mRNA [organism=Solenopsis invicta]
-ATGAAAGAAACTGGTACAATCTTCTTCATTTCGCTTGTGTTTATGGCAAATCTTCAAAATATCGAGAGTAAAAGATATACCTTCGAAGATATAAAGGTGGCTCTGGAACCATTGAAGAAACATTGCATTGATAGAGTGGGCAAGGATCAAAAGGTGATCGATGATGCAAACAATTTTAAAATAGTACCGGACTGGAAAACGCAATGTTACTATAAGTGTATAATGCTGAATACAAAAATGATGAAAAATGATAAGATAGTCGAAAAAGCTTTAATAAATATAGCGGAACACATGTTACTGGAGGAATATTTGCCAGTTGTCGTAAAAACGATAGAACAATGTCATTCAACTGCAACTAAATCGATGGAAGGATGTGCGTTAGCATACGAATATTACAAATGCCTCTATGATGTTAATCCAACGATTGCCATGTATGCATGA
->SiOBP7-mRNA [organism=Solenopsis invicta]
-ATGAAAGCAATCATTATCGTGCTTGCCATTTCTTTTGTTGCTGTTTTGGGTCAACTCACAGATGAACAAAAAGCAAAATTGAGAACGTACAAGGAATCCTGTATCAATGAATCTGGTGTCGATACTACCATACTTGAAAATGCAAAAAAAGGAGAGGTAGCTGAAAGTGACGAAAAGCTTGCTTGTTTCAGTACCTGTTTGTTAAAGAAAATCGGAATTATGAATGCGGATGAAGACATTAACTGGGAAGTAGCTCGTGCTAAATTGCCACCAGGCGTACCGCAAGAACAGGCCGATCAAATATATAATGCCTGCAAAGACATTACTGGAACAGGTTGTGAAAAAGGAGGCAAAGTGTTCAAATGCTTCTTGGACAACAAACATTTTCATCTTTTATCATAA
->SiOBP8-mRNA [organism=Solenopsis invicta]
-ATGCATCATAGTGCAAGTACTCATGCTATTGCTATCTTTATGTCGGTAATATATATCCTCTTTGTGGTTgTTATTATTACTCGTTTCAAAGAGaCATACTTGTCTGAAAATAGTCCATTCACAGAGAAGGAAACAGAAAAATTAAGAGGCTACAGAACATTATGTATGAACAAATATGATGTTGATACGACAATAATTaAAAAAGCAAAGGAAATGGAAAACATAATTGATTATATTGACGAAAGACTTGTTTCCTATGTTATTTGTTTATATaAAAACTGGGGAATTATAAATGCAGATGGACACATTGACTGGAAGGTAACTCTTTCTATGTTGCCAGGTGTACCACAAAAAGTATTCAATGAAATATACAGTGCATGCAATCGTACCACTGGTACGGATTATGAAAGAGGATACGAGTTATTTAAGTGCTTCTTACAAAACGAAGTAGATCTTCTATAA
->SiOBP9-mRNA [organism=Solenopsis invicta]
-ATGAAAATTATAAATATATTACTTGTTATTTTATTCCTTCTGTTAGTTGGAGCACGAGCGGACATTAAACGAGAATGTCGCCAACAAACAAATGTGTCTTGGGCATCTTTAAAGCAATTAAAGGCTGGAAACATTGAACAAAATGATATGAAATTAAAATGCTATTTGAAATGCTTTATGGTGAAAATTGGTATTCTTAATGAAGACAGCAATGTAGATGTTGAAAAAGCTCTGCGTCATTTGCCGCGCAGTATGCAAGAATCATCAAAAAGAATTCTTAATCAATGTAAATTGATCCAAGCGGAGAATGCATGCGATAGAGCATTTCAAATAGCTATATGTTACGTTAAAGCGCAACCTGAAATCTTAAAAAACGTATCGTTTATTTAA
->SiOBP10-mRNA [organism=Solenopsis invicta]
-ATGAGGCTCCTCACGGTCGCCTTGGGTTTCCTCCTTCAGGCGTGGATCGTGTACTGCGGGACGAAGAGACCCAGCTTCGTTTCCGAGCAGATGATCGCGACCGCAGCGAGTGTCGTAAACGCCTGCCAAACGCAAACGGGAGTCGCCACAGCTGACATAGAAGCAGTAAGAAACGGACAGTGGCCGGAAACACGTCAATTGAAGTGCTATATGTATTGCCTCTGGGAGCAATTTGGTCTGGTCGACGACAAGAGAGAGCTAAGTCTGAACGGGATGCTGACGTTCTTCCAGAGAATACCCGCTTACAGAGCCGAGGTTGAGAAAGCAATCGGCGAGTGCAAGGGGCTCGCAAAGGGTGATAACTGCGAGTACGCGTACGCGTTTAACAAGTGTTACGCGCAGCTATCTCCGAGGACTTACTATCTATTCTAA
->SiOBP11-mRNA [organism=Solenopsis invicta]
-ATGGCAAGAAAAAGCCTAATTCTCGTCTGTGTCTCTGTGGTTCTCACGCAGCTCGTCGTTGTGAGTTTTAGTGCCAAAACAGATGAAATAGATTGGACTACTGTTCATGATGATCTAAGAAAACTGGGTGCTACTTTTCGAAAAAAATGTTTAGCAGAGACTGGCGTGACGATTGATAAGTTAGAAGGAGCAGAAATGGGTCAATTTCCGGATGACAGAAAATTGGCATGTTATTTCAAATGCGTGATGGAAAAAGGCGGAGTGATGAAAAAGGATGGCACTATAAACTACAAAGTATTGGCCAAATtGCTTCCGCAAGCATATAAACAAATTGGAATAGACATGATGGATGAGTGTCGCGATATAGAGGGTAGCGACAGTTGTGAGAAAGGCATGAAATTTCATCAATGCATGTACAACGCAAATCCTGTGGCGTTCTTCGTTATCTAG
->SiOBP12-mRNA [organism=Solenopsis invicta]
-ATGAAACATCTAGTGCTGTGCGCATGTGTTTTGTTATTCACTTTTTAGTTGTCTAACTCATCAGAACTAAAACAAAAGATTCAAGAAGAAGTAAAGATCAAGCAACGGATTGATTTTGAAGCTTGCTTGAGTGAAAATGGTATAAATGAAAGTGACTTGTACGGTCCGACAGAAATAGTGTCTAATGTACATACCGAAACAGCAAATGAAGAAAAAACGAGAAAGAATGGCTGCTTTATGGCGTGTTTTTTAAAAAAACAAAATTTAATGGAAGGAACCAACATTAAAGAAGATGAAGTTATTGCACGATTAAATGAAGTAGTAGTTACTGATGATGTTGaAAAAAAATTGCGCACAATTGTGCGTAAATGCATaAAAGAAAAGAAGGACATTACGCAAGAATGTGATAAATGTTTCTCTATATACGTATGTATTATAAAAGCTGTAAGTGAAGAAAGAAAATGTATGCAGGAAGAAAACGTAAGAACTGAAGAAGAAGAAACAGGAGAACCAAATAAAAAGAAGTAG
->SiOBP13-mRNA [organism=Solenopsis invicta]
-ATGAAACATCTAGTGCTGTGCGCATGTGTTTTGATATTTGCTTTGTCTAACGCAACAGAAATACAACAAGAGATCCAAAATGAGATCAAACTACGGCTTGATTTAGAAGCTTGCTTGATTGAAAATGGTTTAAATAACAGTGGCTTGTACAGTATGAACGAAGTATCCATTAACGTACATACCAAACCAGGAAATGAAGAAAGAACGAGAAAGAATGGCTGCTTTATGGCGTGTGTTTTGAAAAAACAAAATTTAATGGAAGGAACAAACATTAAAGAAGACGAAGTTATTGCACGATTATATGAATTAACTAGGCAAGATTTAAAAGTGATATTGGGCAAAATTGTGCGAAAATGCCTAGAAGAAAAGAGGGATATTACGCAAGAATGTGCTAAATGTTTCTCTATATTCGAATGCATAATACAAACTATGGATAAATTCCCAAGAGAACATGAACATGAAGAAATCGTAACAACTGAATGA
->SiOBP14-mRNA [organism=Solenopsis invicta]
-atgaaaggtttcatactctgggTCTGTGtttttAtttttgctTCGTCTAGTTCGTCAAAACTAAAAGAAGAGAAACACATAAATACAAATGTAAGAGCTATTCAAGATGAAATTAAACCTTGTTTAAGTGAAATTGGTATAGCTTATGAGGCTTTATACCCACCAGCCGAAATAATAGCTAACGTACATACTCAACCAGCAAATAAAGAAAGAACGAAAAATCATGGCTGTTTCATGGCGTGTGTTTTGAAAAAACAGAATTTAATAGAAGGAACAAACATTAAAGAAGCACAAGTTTATTCAAGGTTACATGAAATACTTGACGAAGAACTTGATGGACCAGGACACCAAATTATACGTAAATGCATGGAAGAAGTGAGGAATATGACACAAGAATGTGAGAAAGGTTTTTCTCTGTACGTATGTATCGTAAAAGAAGCGGCTGCGCATGAAGAAGAAGCAAAACGTCAGAAAAATaAAAAAAATTGA
->SiOBP15-mRNA [organism=Solenopsis invicta]
-ATGAAAACTTTCGTACTTTGTGCTTGCGTCTTCGTTCTTGCTGTATACTTTCAGTCGTCTAGTTCATCAGAACTAAATGAACAAGAACTCAGAAAGATAGGAATATCTATTCGGAATGATTTTAACACTTGCCTCAGTGAAATTGGTATAACTCCTGCTGACTTTGTCAAACCGATGGAAATAGTTACTAACGTACATCTGCAACCTGCAAATGAAGAAAGAACAAACAAACATGGCTGCTTTATAGCGTGTGTTTTAAAGAAACAGAATTTGATTGAAGGAACAAAGATTAAAGAAGAGCAAGTTTATGAAAGATTACAATTAATATTTGACGAAAATCCTGGCGGACCAATGCACCAAATTGTACAAAAATGCATGGAAAAAGTGAGGAATGACGCACAAGAATGTGAGAAATGCTTCTCTGTCTATGTTTGTACCATCAAAGATATGTATGAAGAAGAACAACGCAGAAAAAATGAAAGAAACTAA
->SiOBP16-mRNA [organism=Solenopsis invicta]
-ATGAAAAGTCTCGTGCTTTGCGCCTGTGTTTTATTACTTGCTTTTCAGCTGTCTAGCTCAACAGAACTTAAAGAAAAGCTAAAGAATGAAGAAAAAAATATTGAGAATATTCTTGAAACTTGTCTAAATGAACAGGGTTTATCTCGGAATGACATGTACAAGGAGGAGGAACTAATGACTAAAGTACATACTGAATCTGTGAATGCAGAAAGAACAAGAAAAGTTGGTTGCTTTGTTGCATGTGCCATGGAAAAGCTGAATTTAATGGATGAAGCAACCATTAAGGAAACACAAATTCATGaAAAAATAAATGAACTATTTGAAGGTCGTGACCAAGGTATAGCACACAAAATTGCGCGTAAATGTTTaAAAAAAGCGAGAAGTATTACGCAAAAATGTGAGAAATGTTTTTCTCTATACGTATGCATCGCAGAAAGTGTGCATAAATTACAAGGACACGAAGAACATGTAAGAGAAGAAACAGAAGAGATAGAAGAAACAGAAGAACAGATCTAA
->SiOBPZ1-mRNA [organism=Solenopsis invicta]
-ATGACCAGACTGCTCCTCGTTGTCCTGTTCAGCCTTTGCTTGTTGCTGATAGAATCAGTAAATTCATTAAAATGCAGAACAGGTATTCAGCAGACGGACGATCAATACCGCAAGATTATGCAAACTTGCAAGAAACGATTTACGACCGATGATGATGACGACGACGATTATAGCAATGATTCATCATCAAATGAAAATGACGATAATGATTCTTCAAGCGTAGATTTATTTGGTACAAGGTTCTTCGTGAGTGGCGGTAGCAAGTTTTCCAATATGCGCTCTTGGAAAGATCCTAATGAAAATCGGAATCGAGGAAATGATCAGAGAAATGGTAACGACCGACGCTATTCCGTCAGTTATACAAATGGGAATTGGAAAAATGCTCAATATCCTTTTCAAGGCAGCAATAATCGCGATTATAGTTATTCTGAGGGAGCTGGCAGACCAAGCTATGACCAAATGTATAATGGCAACTCTGAGAATTATGATAAGCAACAAAAACAAACCTGCATCAATCAGTGTTTCTTCAACGAATTAAATATGGTAGATCAAAGGGGTTTCCCAGAGCAAGTTTCGGTCATCCAATTTTTGACACGTAATATACACAACCCAGAATTACAGGACTTTATAGAGGAAGCTGTCATAGAATGTTTTCATTATTTGAATTCAGATATAAGGCAAAACAAATGTTATTTCTCAGAAAATCTCGTGACTTGTTTGATTGATAAAGGAAAGGAAAGATGCGAAGATTGGGATAATTAA
->SiOBPZ2-mRNA [organism=Solenopsis invicta]
-ATGAAAGCAATCATTATCGTGCTCACCATTTCTTTCATCGCCGTTTTGGGAGATCAACTCAGAGATGAACAAAAaGTAAAATTGAGAGGGTACAAAGAATCCTGTATTAACGAATCTGGTGTCGATATTACCGTAATTGAAAATGCAAAGAAaGGAAAAATAGCTGAAAATGACAAAAAGTTTGCTTGTTTTGCTACCTGTTTGCTAAATAAAGCCAGAATTATGAATGCAGATGGAGACGTTGACTGGGACCGAGCTCGTTTTATATTTTCAAGTATACCACAAGAACGACTTGATGAAATTTATGATGCATGCAAACACATTACTGGAACAGGTTGTGAAAAGGGAGGCAAACTGTTTAAATGTTTCATCGACAACAACATTAATATTTTATAA
->SiOBPZ3-mRNA [organism=Solenopsis invicta]
-ATGAAAAGTCTCGTGCTTTGTGCCTGTGTTTTAGTACTTGCTTTTCAGCCGTCTAGCTCAACAAAACTAAAACAAAAGCTAAAGAATGAAATAGACAATCTTCGCGATAATATTGAAATTTGCGTATTTGAACAGGGTTTATCTCCGAGTGATATATACAGAGAGGAAGAAATAATGACTAACGTACATACTGAATCTGTGAATGCAGAAAAATCGAGAAAATTTGGTTGCTTTGTTGCGTGTGTCTTGAAAAAATTGAATTTAATGGATGGAGCAACCATTAAAGAAATACAAATTCATGCAAAAATAAATAAAACAGTTGATCATAATATGCAAGATGTAGCACACAAAATTGCGCGTAAATGCTTGAAAAAAGCGAGAAGTATTACGCAAGAATGTGAGAAATGTTTTTCTCTATACGTATGCATCATAGAAAATATGCATAAATTGGAAGGACACGAAGAACATGTATAA
->SiOBPZ4-mRNA [organism=Solenopsis invicta]
-ATGAAAACAATCGTTATCGTGCTCACCATTTCTTTCATCGCCGTTTTGGGTCAACTCACAGATGAACAAAAAGCAAATTTGAGAGAGTACAAAGAATCCTGTATAAACGAAACTGGTGTTGACACTGTTTTAATTGAAAATGCAAAGAAAGGACAAATAGCTGAAAATGACGAAAAGCTTGCTTGTTTCGCTACCTGTTTGTTAAAGAAAGCCGAAATTATAAATGCAGATGGACACATTGACTGGAAAGTAGCTCGTTCTAAATTTCCAGTACCACGAGAAAGACTCGATCAAATTTATAATGCATGCAAGCACATTACTGAAACAGGCTGTGAAAAAGGAGGCAAACTGTTTAAATGTTTCATGGACAACAACATTTATCTTTTACAATAG
->SiOBPZ5-mRNA [organism=Solenopsis invicta]
-atgaaacatctagtgctgtgcgcatgtgttttgttattcacttttcagttgtctaattcatcagaactaaaacaaaagtttcaagaagaagtaaagattcagcaacggattgattttgaagcttgcttgagtgaaaatggtataaatgaaagtgaattatacggttggacagaaatattgtctaatgtacataccgaaacagcaaatgaagaaagaacgagaaagaatggctgctttatggcgtgttttttaaaaaaacaaaatttaatggaaggaaccagcattaaagaagatgaagttattgcacgattagatgaagtagttattaatgagactggagtaaaattgcccacaattgtgcataaatgcataaaagaaaagaaggatattacgcaagaatgtgataaatgtttctctatatacgtatgtattataaaagctgcaagtgaagaaaaaaaacgtatgcaggaagaaaacgtaagaactgaagaagaagaaacaggagaaccaaataaaaagaagtag
->SiOBPZ6-mRNA [organism=Solenopsis invicta]
-ATGCATCGTAGTGCAAGTACTCATGCTATTACTAGCTTTACGTTGGTAATATGTATCCTCTTTGTGATTGTTATTATTACTCGTTTCAAAGAGACATACTTGTCTGAAAATAGTCCATTCACAGAGAAGGAAACAGAAAAATTAAGAGGCTACAGAACATTATGTATGAACAAATATGATGTTGATACGACAATAATTGAAAAAGCAAAGGAAATGGAAAACGTAATTGATTATATTGACGAAAGACTTGTTTCCTATGTTATTTGTTTATATAAAAACTGGGGAATTATAAATGCAGATGGACACATTGACTGGAAGGTAACTCTTTCTATGTTGCGAGGTGTACCACAAAAAGTATTCAATGAAATATACAGTGCATGCAATCGTACCACTGGTACAGATTATGAAAGAGGATACGAGTTATTTAAGTGCTTCTTACGAAACAAAGTAGATCTTCTATAA

data/spec/sequences/sequenceserver-2_hits.fa

@@ -1,10 +0,0 @@
->SI2.2.0_06267 locus=Si_gnF.scaffold02592[1282609..1284114].pep_2 quality=100.00
-MNTLWLSLWDYPGKLPLNFMVFDTKDDLQAAYWRDPYSIPLAVIFEDPQPISQRLIYEIR
-TNPSYTLPPPPTKLYSAPISCRKNKTGHWMDDILSIKTGESCPVNNYLHSGFLALQMITD
-ITKIKLENSDVTIPDIKLIMFPKEPYTADWMLAFRVVIPLYMVLALSQFITYLLILIVGE
-KENKIKEGMKMMGLNDSVF
->SI2.2.0_13722 locus=Si_gnF.scaffold06207[1925625..1928536].pep_1 quality=100.00
-MSANRLNVLVTLMLAVALLVTESGNAQVDGYLQFNPKRSAVSSPQKYCGKKLSNALQIIC
-DGVYNSMFKKSGQDFPPQNKRHIAHRINGNEEESFTTLKSNFLNWCVEVYHRHYRFVFVS
-EMEMADYPLAYDISPYLPPFLSRARARGMLDGRFAGRRYRRESRGIHEECCINGCTINEL
-TSYCGP

data/spec/sequences/sequenceserver-SI2.2.0_06267.fa

@@ -1,5 +0,0 @@
->SI2.2.0_06267 locus=Si_gnF.scaffold02592[1282609..1284114].pep_2 quality=100.00
-MNTLWLSLWDYPGKLPLNFMVFDTKDDLQAAYWRDPYSIPLAVIFEDPQPISQRLIYEIR
-TNPSYTLPPPPTKLYSAPISCRKNKTGHWMDDILSIKTGESCPVNNYLHSGFLALQMITD
-ITKIKLENSDVTIPDIKLIMFPKEPYTADWMLAFRVVIPLYMVLALSQFITYLLILIVGE
-KENKIKEGMKMMGLNDSVF

data/spec/sequences/sp_P04637_P53_HUMAN_gi_1099170394_ref_XP_018868681_1.txt

@@ -1,6 +0,0 @@
->sp|P04637|P53_HUMAN:1-393
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-393_alignment_gi|1099170394|ref|XP_018868681.1|:16-408
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->gi|1099170394|ref|XP_018868681.1|:16-408
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPTLNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD

data/spec/sequences/sp_P04637_P53_HUMAN_gi_120407068_ref_NP_000537_3.txt

@@ -1,6 +0,0 @@
->sp|P04637|P53_HUMAN:1-393
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-393_alignment_gi|120407068|ref|NP_000537.3|:1-393
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->gi|120407068|ref|NP_000537.3|:1-393
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD

data/spec/sequences/sp_P04637_P53_HUMAN_gi_1484127324_gb_MG595988_1.txt

@@ -1,6 +0,0 @@
->sp|P04637|P53_HUMAN:1-393
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-393_alignment_gi|1484127324|gb|MG595988.1|:1-1179
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->gi|1484127324|gb|MG595988.1|:1-1179
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD

data/spec/sequences/sp_P04637_P53_HUMAN_gi_395440626_gb_JQ694049_1.txt

@@ -1,6 +0,0 @@
->sp|P04637|P53_HUMAN:1-393
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-393_alignment_gi|395440626|gb|JQ694049.1|:24-1202
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->gi|395440626|gb|JQ694049.1|:24-1202
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD

data/spec/sequences/sp_P04637_P53_HUMAN_sp_P04637_P53_HUMAN.txt

@@ -1,6 +0,0 @@
->sp|P04637|P53_HUMAN:1-394
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-394_alignment_sp|P04637|P53_HUMAN:1-393
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
->sp|P04637|P53_HUMAN:1-393
-MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD

data/spec/sequenceserver_spec.rb

@@ -1,90 +0,0 @@
-require 'spec_helper'
-
-# Test the main module, startup process, etc.
-module SequenceServer
-  describe 'SequenceServer' do
-
-    # Clear config and databases before each test.
-    before :each do
-      @config = nil
-      Database.clear
-    end
-
-    # bin, if set, should be a _directory_ that exists
-    it 'raises appropriate error if bin incorrectly set' do
-      # Raise if bin dir is not a directory.
-      expect do
-        SequenceServer.init(bin: __FILE__)
-      end.to raise_error(ENOENT)
-
-      # Raise if bin dir does not exist.
-      expect do
-        SequenceServer.init(bin: '/foo/bar')
-      end.to raise_error(ENOENT)
-    end
-
-    # database_dir is compulsory
-    it 'raises appropriate error if database_dir not set' do
-      expect do
-        SequenceServer.init(database_dir: nil)
-      end.to raise_error(DATABASE_DIR_NOT_SET)
-    end
-
-    # database_dir, when set, should be a _directory_ that exists.
-    it 'raises appropriate error if database_dir incorrectly set' do
-      # Raise if database_dir is not a directory.
-      expect do
-        SequenceServer.init(database_dir: __FILE__)
-      end.to raise_error(ENOENT)
-
-      # Raise if database_dir does not exist.
-      expect do
-        SequenceServer.init(database_dir: '/foo/bar')
-      end.to raise_error(ENOENT)
-    end
-
-    # database_dir, when correctly set, should contain at least one BLAST+
-    # database.
-    it "raises appropriate error if database_dir doesn't contain any BLAST+"\
-       'database' do
-      expect do
-        database_dir_no_db = File.join(__dir__, 'database', 'unformatted',
-                                       'Cardiocondyla_obscurior')
-        SequenceServer.init(database_dir: database_dir_no_db)
-      end.to raise_error(NO_BLAST_DATABASE_FOUND)
-    end
-
-    # num_threads, if set, should a number not less than 1.
-    it 'raises appropriate error if num_threads incorrectly set' do
-      # Raise if not a number.
-      expect do
-        SequenceServer.init(num_threads: 'foo')
-      end.to raise_error(NUM_THREADS_INCORRECT)
-
-      # Raise if less than 1.
-      expect do
-        SequenceServer.init(num_threads: 0)
-      end.to raise_error(NUM_THREADS_INCORRECT)
-    end
-
-    # extension file, if set, should be a _file_ that exists.
-    it 'raises appropriate error if require incorrectly set' do
-      # Raise if not found.
-      expect do
-        SequenceServer.init(require: 'foo/bar')
-      end.to raise_error(ENOENT)
-
-      # Raise if directory.
-      expect do
-        SequenceServer.init(require: __dir__)
-      end.to raise_error(ENOENT)
-    end
-
-    it 'has a list of databases after startup' do
-      SequenceServer.init(database_dir:
-                          File.join(__dir__, 'database', 'sample'))
-      Database.all.should_not be_empty
-      Database.all.length.should == 4
-    end
-  end
-end

data/spec/spec_helper.rb

@@ -1,63 +0,0 @@
-require 'simplecov'
-require 'capybara/rspec'
-require 'capybara-screenshot/rspec'
-require 'selenium-webdriver'
-
-require_relative 'download_helper'
-
-# Start SimpleCov.
-SimpleCov.start
-
-# Load SequenceServer in testing mode.
-ENV['RACK_ENV'] = 'test'
-require 'sequenceserver'
-
-# For the purpose of testing, set DOTDIR to spec/dotdir.
-SequenceServer::DOTDIR = File.join(__dir__, 'dotdir')
-
-RSpec.configure do |config|
-  # Explicitly enable should syntax of rspec.
-  config.expect_with :rspec do |expectations|
-    expectations.syntax = [:should, :expect]
-  end
-
-  # To use url_encode function in import_spec.
-  config.include ERB::Util, type: :feature
-
-  # For file downloading.
-  config.include DownloadHelpers, type: :feature
-
-  # Setup capybara tests.
-  config.before :context, type: :feature do
-    Capybara.app = SequenceServer.init
-    Capybara.server = :webrick
-    Capybara.default_max_wait_time = 30
-
-    Capybara.register_driver :selenium do |app|
-      options = Selenium::WebDriver::Firefox::Options.new
-
-      # Run the browser in headless mode.
-      options.args << '--headless'
-
-      # Tell the browser where to save downloaded files.
-      options.profile = Selenium::WebDriver::Firefox::Profile.new
-      options.profile['browser.download.dir'] = downloads_dir
-      options.profile['browser.download.folderList'] = 2
-
-      # Suppress "open with / save" dialog for FASTA, XML, TSV and PNG file types.
-      options.profile['browser.helperApps.neverAsk.saveToDisk'] =
-        'text/fasta,text/xml,text/tsv,image/png'
-      Capybara::Selenium::Driver.new(app, browser: :firefox, options: options)
-    end
-
-    FileUtils.mkdir_p downloads_dir
-  end
-
-  config.after :example, type: :feature do
-    clear_downloads
-  end
-
-  config.after :context, type: :feature do
-    FileUtils.rm_rf Dir[SequenceServer::DOTDIR + '/*-*-*-*-*']
-  end
-end