scs 0.2.2

data/vendor/scs/linsys/external/amd/amd_1.c

@@ -0,0 +1,180 @@
+/* ========================================================================= */
+/* === AMD_1 =============================================================== */
+/* ========================================================================= */
+
+/* ------------------------------------------------------------------------- */
+/* AMD, Copyright (c) Timothy A. Davis,					     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* email: DrTimothyAldenDavis@gmail.com                                      */
+/* ------------------------------------------------------------------------- */
+
+/* AMD_1: Construct A+A' for a sparse matrix A and perform the AMD ordering.
+ *
+ * The n-by-n sparse matrix A can be unsymmetric.  It is stored in MATLAB-style
+ * compressed-column form, with sorted row indices in each column, and no
+ * duplicate entries.  Diagonal entries may be present, but they are ignored.
+ * Row indices of column j of A are stored in Ai [Ap [j] ... Ap [j+1]-1].
+ * Ap [0] must be zero, and nz = Ap [n] is the number of entries in A.  The
+ * size of the matrix, n, must be greater than or equal to zero.
+ *
+ * This routine must be preceded by a call to AMD_aat, which computes the
+ * number of entries in each row/column in A+A', excluding the diagonal.
+ * Len [j], on input, is the number of entries in row/column j of A+A'.  This
+ * routine constructs the matrix A+A' and then calls AMD_2.  No error checking
+ * is performed (this was done in AMD_valid).
+ */
+
+#include "amd_internal.h"
+
+GLOBAL void AMD_1
+(
+    Int n,		/* n > 0 */
+    const Int Ap [ ],	/* input of size n+1, not modified */
+    const Int Ai [ ],	/* input of size nz = Ap [n], not modified */
+    Int P [ ],		/* size n output permutation */
+    Int Pinv [ ],	/* size n output inverse permutation */
+    Int Len [ ],	/* size n input, undefined on output */
+    Int slen,		/* slen >= sum (Len [0..n-1]) + 7n,
+			 * ideally slen = 1.2 * sum (Len) + 8n */
+    Int S [ ],		/* size slen workspace */
+    scs_float Control [ ],	/* input array of size AMD_CONTROL */
+    scs_float Info [ ]	/* output array of size AMD_INFO */
+)
+{
+    Int i, j, k, p, pfree, iwlen, pj, p1, p2, pj2, *Iw, *Pe, *Nv, *Head,
+	*Elen, *Degree, *s, *W, *Sp, *Tp ;
+
+    /* --------------------------------------------------------------------- */
+    /* construct the matrix for AMD_2 */
+    /* --------------------------------------------------------------------- */
+
+    ASSERT (n > 0) ;
+
+    iwlen = slen - 6*n ;
+    s = S ;
+    Pe = s ;	    s += n ;
+    Nv = s ;	    s += n ;
+    Head = s ;	    s += n ;
+    Elen = s ;	    s += n ;
+    Degree = s ;    s += n ;
+    W = s ;	    s += n ;
+    Iw = s ;	    s += iwlen ;
+
+    ASSERT (AMD_valid (n, n, Ap, Ai) == AMD_OK) ;
+
+    /* construct the pointers for A+A' */
+    Sp = Nv ;			/* use Nv and W as workspace for Sp and Tp [ */
+    Tp = W ;
+    pfree = 0 ;
+    for (j = 0 ; j < n ; j++)
+    {
+	Pe [j] = pfree ;
+	Sp [j] = pfree ;
+	pfree += Len [j] ;
+    }
+
+    /* Note that this restriction on iwlen is slightly more restrictive than
+     * what is strictly required in AMD_2.  AMD_2 can operate with no elbow
+     * room at all, but it will be very slow.  For better performance, at
+     * least size-n elbow room is enforced. */
+    ASSERT (iwlen >= pfree + n) ;
+
+#ifndef NDEBUG
+    for (p = 0 ; p < iwlen ; p++) Iw [p] = EMPTY ;
+#endif
+
+    for (k = 0 ; k < n ; k++)
+    {
+	AMD_DEBUG1 (("Construct row/column k= "ID" of A+A'\n", k))  ;
+	p1 = Ap [k] ;
+	p2 = Ap [k+1] ;
+
+	/* construct A+A' */
+	for (p = p1 ; p < p2 ; )
+	{
+	    /* scan the upper triangular part of A */
+	    j = Ai [p] ;
+	    ASSERT (j >= 0 && j < n) ;
+	    if (j < k)
+	    {
+		/* entry A (j,k) in the strictly upper triangular part */
+		ASSERT (Sp [j] < (j == n-1 ? pfree : Pe [j+1])) ;
+		ASSERT (Sp [k] < (k == n-1 ? pfree : Pe [k+1])) ;
+		Iw [Sp [j]++] = k ;
+		Iw [Sp [k]++] = j ;
+		p++ ;
+	    }
+	    else if (j == k)
+	    {
+		/* skip the diagonal */
+		p++ ;
+		break ;
+	    }
+	    else /* j > k */
+	    {
+		/* first entry below the diagonal */
+		break ;
+	    }
+	    /* scan lower triangular part of A, in column j until reaching
+	     * row k.  Start where last scan left off. */
+	    ASSERT (Ap [j] <= Tp [j] && Tp [j] <= Ap [j+1]) ;
+	    pj2 = Ap [j+1] ;
+	    for (pj = Tp [j] ; pj < pj2 ; )
+	    {
+		i = Ai [pj] ;
+		ASSERT (i >= 0 && i < n) ;
+		if (i < k)
+		{
+		    /* A (i,j) is only in the lower part, not in upper */
+		    ASSERT (Sp [i] < (i == n-1 ? pfree : Pe [i+1])) ;
+		    ASSERT (Sp [j] < (j == n-1 ? pfree : Pe [j+1])) ;
+		    Iw [Sp [i]++] = j ;
+		    Iw [Sp [j]++] = i ;
+		    pj++ ;
+		}
+		else if (i == k)
+		{
+		    /* entry A (k,j) in lower part and A (j,k) in upper */
+		    pj++ ;
+		    break ;
+		}
+		else /* i > k */
+		{
+		    /* consider this entry later, when k advances to i */
+		    break ;
+		}
+	    }
+	    Tp [j] = pj ;
+	}
+	Tp [k] = p ;
+    }
+
+    /* clean up, for remaining mismatched entries */
+    for (j = 0 ; j < n ; j++)
+    {
+	for (pj = Tp [j] ; pj < Ap [j+1] ; pj++)
+	{
+	    i = Ai [pj] ;
+	    ASSERT (i >= 0 && i < n) ;
+	    /* A (i,j) is only in the lower part, not in upper */
+	    ASSERT (Sp [i] < (i == n-1 ? pfree : Pe [i+1])) ;
+	    ASSERT (Sp [j] < (j == n-1 ? pfree : Pe [j+1])) ;
+	    Iw [Sp [i]++] = j ;
+	    Iw [Sp [j]++] = i ;
+	}
+    }
+
+#ifndef NDEBUG
+    for (j = 0 ; j < n-1 ; j++) ASSERT (Sp [j] == Pe [j+1]) ;
+    ASSERT (Sp [n-1] == pfree) ;
+#endif
+
+    /* Tp and Sp no longer needed ] */
+
+    /* --------------------------------------------------------------------- */
+    /* order the matrix */
+    /* --------------------------------------------------------------------- */
+
+    AMD_2 (n, Pe, Iw, Len, iwlen, pfree,
+	Nv, Pinv, P, Head, Elen, Degree, W, Control, Info) ;
+}

data/vendor/scs/linsys/external/amd/amd_2.c

@@ -0,0 +1,1842 @@
+/* ========================================================================= */
+/* === AMD_2 =============================================================== */
+/* ========================================================================= */
+
+/* ------------------------------------------------------------------------- */
+/* AMD, Copyright (c) Timothy A. Davis,					     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* email: DrTimothyAldenDavis@gmail.com                                      */
+/* ------------------------------------------------------------------------- */
+
+/* AMD_2:  performs the AMD ordering on a symmetric sparse matrix A, followed
+ * by a postordering (via depth-first search) of the assembly tree using the
+ * AMD_postorder routine.
+ */
+
+#include "amd_internal.h"
+
+/* ========================================================================= */
+/* === clear_flag ========================================================== */
+/* ========================================================================= */
+
+static Int clear_flag (Int wflg, Int wbig, Int W [ ], Int n)
+{
+    Int x ;
+    if (wflg < 2 || wflg >= wbig)
+    {
+	for (x = 0 ; x < n ; x++)
+	{
+	    if (W [x] != 0) W [x] = 1 ;
+	}
+	wflg = 2 ;
+    }
+    /*  at this point, W [0..n-1] < wflg holds */
+    return (wflg) ;
+}
+
+
+/* ========================================================================= */
+/* === AMD_2 =============================================================== */
+/* ========================================================================= */
+
+GLOBAL void AMD_2
+(
+    Int n,		/* A is n-by-n, where n > 0 */
+    Int Pe [ ],		/* Pe [0..n-1]: index in Iw of row i on input */
+    Int Iw [ ],		/* workspace of size iwlen. Iw [0..pfree-1]
+			 * holds the matrix on input */
+    Int Len [ ],	/* Len [0..n-1]: length for row/column i on input */
+    Int iwlen,		/* length of Iw. iwlen >= pfree + n */
+    Int pfree,		/* Iw [pfree ... iwlen-1] is empty on input */
+
+    /* 7 size-n workspaces, not defined on input: */
+    Int Nv [ ],		/* the size of each supernode on output */
+    Int Next [ ],	/* the output inverse permutation */
+    Int Last [ ],	/* the output permutation */
+    Int Head [ ],
+    Int Elen [ ],	/* the size columns of L for each supernode */
+    Int Degree [ ],
+    Int W [ ],
+
+    /* control parameters and output statistics */
+    scs_float Control [ ],	/* array of size AMD_CONTROL */
+    scs_float Info [ ]	/* array of size AMD_INFO */
+)
+{
+
+/*
+ * Given a representation of the nonzero pattern of a symmetric matrix, A,
+ * (excluding the diagonal) perform an approximate minimum (UMFPACK/MA38-style)
+ * degree ordering to compute a pivot order such that the introduction of
+ * nonzeros (fill-in) in the Cholesky factors A = LL' is kept low.  At each
+ * step, the pivot selected is the one with the minimum UMFAPACK/MA38-style
+ * upper-bound on the external degree.  This routine can optionally perform
+ * aggresive absorption (as done by MC47B in the Harwell Subroutine
+ * Library).
+ *
+ * The approximate degree algorithm implemented here is the symmetric analog of
+ * the degree update algorithm in MA38 and UMFPACK (the Unsymmetric-pattern
+ * MultiFrontal PACKage, both by Davis and Duff).  The routine is based on the
+ * MA27 minimum degree ordering algorithm by Iain Duff and John Reid.
+ *
+ * This routine is a translation of the original AMDBAR and MC47B routines,
+ * in Fortran, with the following modifications:
+ *
+ * (1) dense rows/columns are removed prior to ordering the matrix, and placed
+ *	last in the output order.  The presence of a dense row/column can
+ *	increase the ordering time by up to O(n^2), unless they are removed
+ *	prior to ordering.
+ *
+ * (2) the minimum degree ordering is followed by a postordering (depth-first
+ *	search) of the assembly tree.  Note that mass elimination (discussed
+ *	below) combined with the approximate degree update can lead to the mass
+ *	elimination of nodes with lower exact degree than the current pivot
+ *	element.  No additional fill-in is caused in the representation of the
+ *	Schur complement.  The mass-eliminated nodes merge with the current
+ *	pivot element.  They are ordered prior to the current pivot element.
+ *	Because they can have lower exact degree than the current element, the
+ *	merger of two or more of these nodes in the current pivot element can
+ *	lead to a single element that is not a "fundamental supernode".  The
+ *	diagonal block can have zeros in it.  Thus, the assembly tree used here
+ *	is not guaranteed to be the precise supernodal elemination tree (with
+ *	"funadmental" supernodes), and the postordering performed by this
+ *	routine is not guaranteed to be a precise postordering of the
+ *	elimination tree.
+ *
+ * (3) input parameters are added, to control aggressive absorption and the
+ *	detection of "dense" rows/columns of A.
+ *
+ * (4) additional statistical information is returned, such as the number of
+ *	nonzeros in L, and the flop counts for subsequent LDL' and LU
+ *	factorizations.  These are slight upper bounds, because of the mass
+ *	elimination issue discussed above.
+ *
+ * (5) additional routines are added to interface this routine to MATLAB
+ *	to provide a simple C-callable user-interface, to check inputs for
+ *	errors, compute the symmetry of the pattern of A and the number of
+ *	nonzeros in each row/column of A+A', to compute the pattern of A+A',
+ *	to perform the assembly tree postordering, and to provide debugging
+ *	ouput.  Many of these functions are also provided by the Fortran
+ *	Harwell Subroutine Library routine MC47A.
+ *
+ * (6) both int and SuiteSparse_long versions are provided.  In the
+ *      descriptions below and integer is and int or SuiteSparse_long depending
+ *      on which version is being used.
+
+ **********************************************************************
+ ***** CAUTION:  ARGUMENTS ARE NOT CHECKED FOR ERRORS ON INPUT.  ******
+ **********************************************************************
+ ** If you want error checking, a more versatile input format, and a **
+ ** simpler user interface, use amd_order or amd_l_order instead.    **
+ ** This routine is not meant to be user-callable.                   **
+ **********************************************************************
+
+ * ----------------------------------------------------------------------------
+ * References:
+ * ----------------------------------------------------------------------------
+ *
+ *  [1] Timothy A. Davis and Iain Duff, "An unsymmetric-pattern multifrontal
+ *	method for sparse LU factorization", SIAM J. Matrix Analysis and
+ *	Applications, vol. 18, no. 1, pp. 140-158.  Discusses UMFPACK / MA38,
+ *	which first introduced the approximate minimum degree used by this
+ *	routine.
+ *
+ *  [2] Patrick Amestoy, Timothy A. Davis, and Iain S. Duff, "An approximate
+ *	minimum degree ordering algorithm," SIAM J. Matrix Analysis and
+ *	Applications, vol. 17, no. 4, pp. 886-905, 1996.  Discusses AMDBAR and
+ *	MC47B, which are the Fortran versions of this routine.
+ *
+ *  [3] Alan George and Joseph Liu, "The evolution of the minimum degree
+ *	ordering algorithm," SIAM Review, vol. 31, no. 1, pp. 1-19, 1989.
+ *	We list below the features mentioned in that paper that this code
+ *	includes:
+ *
+ *	mass elimination:
+ *	    Yes.  MA27 relied on supervariable detection for mass elimination.
+ *
+ *	indistinguishable nodes:
+ *	    Yes (we call these "supervariables").  This was also in the MA27
+ *	    code - although we modified the method of detecting them (the
+ *	    previous hash was the true degree, which we no longer keep track
+ *	    of).  A supervariable is a set of rows with identical nonzero
+ *	    pattern.  All variables in a supervariable are eliminated together.
+ *	    Each supervariable has as its numerical name that of one of its
+ *	    variables (its principal variable).
+ *
+ *	quotient graph representation:
+ *	    Yes.  We use the term "element" for the cliques formed during
+ *	    elimination.  This was also in the MA27 code.  The algorithm can
+ *	    operate in place, but it will work more efficiently if given some
+ *	    "elbow room."
+ *
+ *	element absorption:
+ *	    Yes.  This was also in the MA27 code.
+ *
+ *	external degree:
+ *	    Yes.  The MA27 code was based on the true degree.
+ *
+ *	incomplete degree update and multiple elimination:
+ *	    No.  This was not in MA27, either.  Our method of degree update
+ *	    within MC47B is element-based, not variable-based.  It is thus
+ *	    not well-suited for use with incomplete degree update or multiple
+ *	    elimination.
+ *
+ * Authors, and Copyright (C) 2004 by:
+ * Timothy A. Davis, Patrick Amestoy, Iain S. Duff, John K. Reid.
+ *
+ * Acknowledgements: This work (and the UMFPACK package) was supported by the
+ * National Science Foundation (ASC-9111263, DMS-9223088, and CCR-0203270).
+ * The UMFPACK/MA38 approximate degree update algorithm, the unsymmetric analog
+ * which forms the basis of AMD, was developed while Tim Davis was supported by
+ * CERFACS (Toulouse, France) in a post-doctoral position.  This C version, and
+ * the etree postorder, were written while Tim Davis was on sabbatical at
+ * Stanford University and Lawrence Berkeley National Laboratory.
+
+ * ----------------------------------------------------------------------------
+ * INPUT ARGUMENTS (unaltered):
+ * ----------------------------------------------------------------------------
+
+ * n:  The matrix order.  Restriction:  n >= 1.
+ *
+ * iwlen:  The size of the Iw array.  On input, the matrix is stored in
+ *	Iw [0..pfree-1].  However, Iw [0..iwlen-1] should be slightly larger
+ *	than what is required to hold the matrix, at least iwlen >= pfree + n.
+ *	Otherwise, excessive compressions will take place.  The recommended
+ *	value of iwlen is 1.2 * pfree + n, which is the value used in the
+ *	user-callable interface to this routine (amd_order.c).  The algorithm
+ *	will not run at all if iwlen < pfree.  Restriction: iwlen >= pfree + n.
+ *	Note that this is slightly more restrictive than the actual minimum
+ *	(iwlen >= pfree), but AMD_2 will be very slow with no elbow room.
+ *	Thus, this routine enforces a bare minimum elbow room of size n.
+ *
+ * pfree: On input the tail end of the array, Iw [pfree..iwlen-1], is empty,
+ *	and the matrix is stored in Iw [0..pfree-1].  During execution,
+ *	additional data is placed in Iw, and pfree is modified so that
+ *	Iw [pfree..iwlen-1] is always the unused part of Iw.
+ *
+ * Control:  A scs_float array of size AMD_CONTROL containing input parameters
+ *	that affect how the ordering is computed.  If NULL, then default
+ *	settings are used.
+ *
+ *	Control [AMD_DENSE] is used to determine whether or not a given input
+ *	row is "dense".  A row is "dense" if the number of entries in the row
+ *	exceeds Control [AMD_DENSE] times sqrt (n), except that rows with 16 or
+ *	fewer entries are never considered "dense".  To turn off the detection
+ *	of dense rows, set Control [AMD_DENSE] to a negative number, or to a
+ *	number larger than sqrt (n).  The default value of Control [AMD_DENSE]
+ *	is AMD_DEFAULT_DENSE, which is defined in amd.h as 10.
+ *
+ *	Control [AMD_AGGRESSIVE] is used to determine whether or not aggressive
+ *	absorption is to be performed.  If nonzero, then aggressive absorption
+ *	is performed (this is the default).
+
+ * ----------------------------------------------------------------------------
+ * INPUT/OUPUT ARGUMENTS:
+ * ----------------------------------------------------------------------------
+ *
+ * Pe:  An integer array of size n.  On input, Pe [i] is the index in Iw of
+ *	the start of row i.  Pe [i] is ignored if row i has no off-diagonal
+ *	entries.  Thus Pe [i] must be in the range 0 to pfree-1 for non-empty
+ *	rows.
+ *
+ *	During execution, it is used for both supervariables and elements:
+ *
+ *	Principal supervariable i:  index into Iw of the description of
+ *	    supervariable i.  A supervariable represents one or more rows of
+ *	    the matrix with identical nonzero pattern.  In this case,
+ *	    Pe [i] >= 0.
+ *
+ *	Non-principal supervariable i:  if i has been absorbed into another
+ *	    supervariable j, then Pe [i] = FLIP (j), where FLIP (j) is defined
+ *	    as (-(j)-2).  Row j has the same pattern as row i.  Note that j
+ *	    might later be absorbed into another supervariable j2, in which
+ *	    case Pe [i] is still FLIP (j), and Pe [j] = FLIP (j2) which is
+ *	    < EMPTY, where EMPTY is defined as (-1) in amd_internal.h.
+ *
+ *	Unabsorbed element e:  the index into Iw of the description of element
+ *	    e, if e has not yet been absorbed by a subsequent element.  Element
+ *	    e is created when the supervariable of the same name is selected as
+ *	    the pivot.  In this case, Pe [i] >= 0.
+ *
+ *	Absorbed element e:  if element e is absorbed into element e2, then
+ *	    Pe [e] = FLIP (e2).  This occurs when the pattern of e (which we
+ *	    refer to as Le) is found to be a subset of the pattern of e2 (that
+ *	    is, Le2).  In this case, Pe [i] < EMPTY.  If element e is "null"
+ *	    (it has no nonzeros outside its pivot block), then Pe [e] = EMPTY,
+ *	    and e is the root of an assembly subtree (or the whole tree if
+ *	    there is just one such root).
+ *
+ *	Dense variable i:  if i is "dense", then Pe [i] = EMPTY.
+ *
+ *	On output, Pe holds the assembly tree/forest, which implicitly
+ *	represents a pivot order with identical fill-in as the actual order
+ *	(via a depth-first search of the tree), as follows.  If Nv [i] > 0,
+ *	then i represents a node in the assembly tree, and the parent of i is
+ *	Pe [i], or EMPTY if i is a root.  If Nv [i] = 0, then (i, Pe [i])
+ *	represents an edge in a subtree, the root of which is a node in the
+ *	assembly tree.  Note that i refers to a row/column in the original
+ *	matrix, not the permuted matrix.
+ *
+ * Info:  A scs_float array of size AMD_INFO.  If present, (that is, not NULL),
+ *	then statistics about the ordering are returned in the Info array.
+ *	See amd.h for a description.
+
+ * ----------------------------------------------------------------------------
+ * INPUT/MODIFIED (undefined on output):
+ * ----------------------------------------------------------------------------
+ *
+ * Len:  An integer array of size n.  On input, Len [i] holds the number of
+ *	entries in row i of the matrix, excluding the diagonal.  The contents
+ *	of Len are undefined on output.
+ *
+ * Iw:  An integer array of size iwlen.  On input, Iw [0..pfree-1] holds the
+ *	description of each row i in the matrix.  The matrix must be symmetric,
+ *	and both upper and lower triangular parts must be present.  The
+ *	diagonal must not be present.  Row i is held as follows:
+ *
+ *	    Len [i]:  the length of the row i data structure in the Iw array.
+ *	    Iw [Pe [i] ... Pe [i] + Len [i] - 1]:
+ *		the list of column indices for nonzeros in row i (simple
+ *		supervariables), excluding the diagonal.  All supervariables
+ *		start with one row/column each (supervariable i is just row i).
+ *		If Len [i] is zero on input, then Pe [i] is ignored on input.
+ *
+ *	    Note that the rows need not be in any particular order, and there
+ *	    may be empty space between the rows.
+ *
+ *	During execution, the supervariable i experiences fill-in.  This is
+ *	represented by placing in i a list of the elements that cause fill-in
+ *	in supervariable i:
+ *
+ *	    Len [i]:  the length of supervariable i in the Iw array.
+ *	    Iw [Pe [i] ... Pe [i] + Elen [i] - 1]:
+ *		the list of elements that contain i.  This list is kept short
+ *		by removing absorbed elements.
+ *	    Iw [Pe [i] + Elen [i] ... Pe [i] + Len [i] - 1]:
+ *		the list of supervariables in i.  This list is kept short by
+ *		removing nonprincipal variables, and any entry j that is also
+ *		contained in at least one of the elements (j in Le) in the list
+ *		for i (e in row i).
+ *
+ *	When supervariable i is selected as pivot, we create an element e of
+ *	the same name (e=i):
+ *
+ *	    Len [e]:  the length of element e in the Iw array.
+ *	    Iw [Pe [e] ... Pe [e] + Len [e] - 1]:
+ *		the list of supervariables in element e.
+ *
+ *	An element represents the fill-in that occurs when supervariable i is
+ *	selected as pivot (which represents the selection of row i and all
+ *	non-principal variables whose principal variable is i).  We use the
+ *	term Le to denote the set of all supervariables in element e.  Absorbed
+ *	supervariables and elements are pruned from these lists when
+ *	computationally convenient.
+ *
+ *  CAUTION:  THE INPUT MATRIX IS OVERWRITTEN DURING COMPUTATION.
+ *  The contents of Iw are undefined on output.
+
+ * ----------------------------------------------------------------------------
+ * OUTPUT (need not be set on input):
+ * ----------------------------------------------------------------------------
+ *
+ * Nv:  An integer array of size n.  During execution, ABS (Nv [i]) is equal to
+ *	the number of rows that are represented by the principal supervariable
+ *	i.  If i is a nonprincipal or dense variable, then Nv [i] = 0.
+ *	Initially, Nv [i] = 1 for all i.  Nv [i] < 0 signifies that i is a
+ *	principal variable in the pattern Lme of the current pivot element me.
+ *	After element me is constructed, Nv [i] is set back to a positive
+ *	value.
+ *
+ *	On output, Nv [i] holds the number of pivots represented by super
+ *	row/column i of the original matrix, or Nv [i] = 0 for non-principal
+ *	rows/columns.  Note that i refers to a row/column in the original
+ *	matrix, not the permuted matrix.
+ *
+ * Elen:  An integer array of size n.  See the description of Iw above.  At the
+ *	start of execution, Elen [i] is set to zero for all rows i.  During
+ *	execution, Elen [i] is the number of elements in the list for
+ *	supervariable i.  When e becomes an element, Elen [e] = FLIP (esize) is
+ *	set, where esize is the size of the element (the number of pivots, plus
+ *	the number of nonpivotal entries).  Thus Elen [e] < EMPTY.
+ *	Elen (i) = EMPTY set when variable i becomes nonprincipal.
+ *
+ *	For variables, Elen (i) >= EMPTY holds until just before the
+ *	postordering and permutation vectors are computed.  For elements,
+ *	Elen [e] < EMPTY holds.
+ *
+ *	On output, Elen [i] is the degree of the row/column in the Cholesky
+ *	factorization of the permuted matrix, corresponding to the original row
+ *	i, if i is a super row/column.  It is equal to EMPTY if i is
+ *	non-principal.  Note that i refers to a row/column in the original
+ *	matrix, not the permuted matrix.
+ *
+ *	Note that the contents of Elen on output differ from the Fortran
+ *	version (Elen holds the inverse permutation in the Fortran version,
+ *	which is instead returned in the Next array in this C version,
+ *	described below).
+ *
+ * Last: In a degree list, Last [i] is the supervariable preceding i, or EMPTY
+ *	if i is the head of the list.  In a hash bucket, Last [i] is the hash
+ *	key for i.
+ *
+ *	Last [Head [hash]] is also used as the head of a hash bucket if
+ *	Head [hash] contains a degree list (see the description of Head,
+ *	below).
+ *
+ *	On output, Last [0..n-1] holds the permutation.  That is, if
+ *	i = Last [k], then row i is the kth pivot row (where k ranges from 0 to
+ *	n-1).  Row Last [k] of A is the kth row in the permuted matrix, PAP'.
+ *
+ * Next: Next [i] is the supervariable following i in a link list, or EMPTY if
+ *	i is the last in the list.  Used for two kinds of lists:  degree lists
+ *	and hash buckets (a supervariable can be in only one kind of list at a
+ *	time).
+ *
+ *	On output Next [0..n-1] holds the inverse permutation. 	That is, if
+ *	k = Next [i], then row i is the kth pivot row. Row i of A appears as
+ *	the (Next[i])-th row in the permuted matrix, PAP'.
+ *
+ *	Note that the contents of Next on output differ from the Fortran
+ *	version (Next is undefined on output in the Fortran version).
+
+ * ----------------------------------------------------------------------------
+ * LOCAL WORKSPACE (not input or output - used only during execution):
+ * ----------------------------------------------------------------------------
+ *
+ * Degree:  An integer array of size n.  If i is a supervariable, then
+ *	Degree [i] holds the current approximation of the external degree of
+ *	row i (an upper bound).  The external degree is the number of nonzeros
+ *	in row i, minus ABS (Nv [i]), the diagonal part.  The bound is equal to
+ *	the exact external degree if Elen [i] is less than or equal to two.
+ *
+ *	We also use the term "external degree" for elements e to refer to
+ *	|Le \ Lme|.  If e is an element, then Degree [e] is |Le|, which is the
+ *	degree of the off-diagonal part of the element e (not including the
+ *	diagonal part).
+ *
+ * Head:   An integer array of size n.  Head is used for degree lists.
+ *	Head [deg] is the first supervariable in a degree list.  All
+ *	supervariables i in a degree list Head [deg] have the same approximate
+ *	degree, namely, deg = Degree [i].  If the list Head [deg] is empty then
+ *	Head [deg] = EMPTY.
+ *
+ *	During supervariable detection Head [hash] also serves as a pointer to
+ *	a hash bucket.  If Head [hash] >= 0, there is a degree list of degree
+ *	hash.  The hash bucket head pointer is Last [Head [hash]].  If
+ *	Head [hash] = EMPTY, then the degree list and hash bucket are both
+ *	empty.  If Head [hash] < EMPTY, then the degree list is empty, and
+ *	FLIP (Head [hash]) is the head of the hash bucket.  After supervariable
+ *	detection is complete, all hash buckets are empty, and the
+ *	(Last [Head [hash]] = EMPTY) condition is restored for the non-empty
+ *	degree lists.
+ *
+ * W:  An integer array of size n.  The flag array W determines the status of
+ *	elements and variables, and the external degree of elements.
+ *
+ *	for elements:
+ *	    if W [e] = 0, then the element e is absorbed.
+ *	    if W [e] >= wflg, then W [e] - wflg is the size of the set
+ *		|Le \ Lme|, in terms of nonzeros (the sum of ABS (Nv [i]) for
+ *		each principal variable i that is both in the pattern of
+ *		element e and NOT in the pattern of the current pivot element,
+ *		me).
+ *	    if wflg > W [e] > 0, then e is not absorbed and has not yet been
+ *		seen in the scan of the element lists in the computation of
+ *		|Le\Lme| in Scan 1 below.
+ *
+ *	for variables:
+ *	    during supervariable detection, if W [j] != wflg then j is
+ *	    not in the pattern of variable i.
+ *
+ *	The W array is initialized by setting W [i] = 1 for all i, and by
+ *	setting wflg = 2.  It is reinitialized if wflg becomes too large (to
+ *	ensure that wflg+n does not cause integer overflow).
+
+ * ----------------------------------------------------------------------------
+ * LOCAL INTEGERS:
+ * ----------------------------------------------------------------------------
+ */
+
+    Int deg, degme, dext, lemax, e, elenme, eln, i, ilast, inext, j,
+	jlast, jnext, k, knt1, knt2, knt3, lenj, ln, me, mindeg, nel, nleft,
+	nvi, nvj, nvpiv, slenme, wbig, we, wflg, wnvi, ok, ndense, ncmpa,
+	dense, aggressive ;
+
+    uInt hash ;	    /* unsigned, so that hash % n is well defined.*/
+
+/*
+ * deg:		the degree of a variable or element
+ * degme:	size, |Lme|, of the current element, me (= Degree [me])
+ * dext:	external degree, |Le \ Lme|, of some element e
+ * lemax:	largest |Le| seen so far (called dmax in Fortran version)
+ * e:		an element
+ * elenme:	the length, Elen [me], of element list of pivotal variable
+ * eln:		the length, Elen [...], of an element list
+ * hash:	the computed value of the hash function
+ * i:		a supervariable
+ * ilast:	the entry in a link list preceding i
+ * inext:	the entry in a link list following i
+ * j:		a supervariable
+ * jlast:	the entry in a link list preceding j
+ * jnext:	the entry in a link list, or path, following j
+ * k:		the pivot order of an element or variable
+ * knt1:	loop counter used during element construction
+ * knt2:	loop counter used during element construction
+ * knt3:	loop counter used during compression
+ * lenj:	Len [j]
+ * ln:		length of a supervariable list
+ * me:		current supervariable being eliminated, and the current
+ *		    element created by eliminating that supervariable
+ * mindeg:	current minimum degree
+ * nel:		number of pivots selected so far
+ * nleft:	n - nel, the number of nonpivotal rows/columns remaining
+ * nvi:		the number of variables in a supervariable i (= Nv [i])
+ * nvj:		the number of variables in a supervariable j (= Nv [j])
+ * nvpiv:	number of pivots in current element
+ * slenme:	number of variables in variable list of pivotal variable
+ * wbig:	= (INT_MAX - n) for the int version, (SuiteSparse_long_max - n)
+ *                  for the SuiteSparse_long version.  wflg is not allowed to
+ *                  be >= wbig.
+ * we:		W [e]
+ * wflg:	used for flagging the W array.  See description of Iw.
+ * wnvi:	wflg - Nv [i]
+ * x:		either a supervariable or an element
+ *
+ * ok:		true if supervariable j can be absorbed into i
+ * ndense:	number of "dense" rows/columns
+ * dense:	rows/columns with initial degree > dense are considered "dense"
+ * aggressive:	true if aggressive absorption is being performed
+ * ncmpa:	number of garbage collections
+
+ * ----------------------------------------------------------------------------
+ * LOCAL DOUBLES, used for statistical output only (except for alpha):
+ * ----------------------------------------------------------------------------
+ */
+
+    scs_float f, r, ndiv, s, nms_lu, nms_ldl, dmax, alpha, lnz, lnzme ;
+
+/*
+ * f:		nvpiv
+ * r:		degme + nvpiv
+ * ndiv:	number of divisions for LU or LDL' factorizations
+ * s:		number of multiply-subtract pairs for LU factorization, for the
+ *		    current element me
+ * nms_lu	number of multiply-subtract pairs for LU factorization
+ * nms_ldl	number of multiply-subtract pairs for LDL' factorization
+ * dmax:	the largest number of entries in any column of L, including the
+ *		    diagonal
+ * alpha:	"dense" degree ratio
+ * lnz:		the number of nonzeros in L (excluding the diagonal)
+ * lnzme:	the number of nonzeros in L (excl. the diagonal) for the
+ *		    current element me
+
+ * ----------------------------------------------------------------------------
+ * LOCAL "POINTERS" (indices into the Iw array)
+ * ----------------------------------------------------------------------------
+*/
+
+    Int p, p1, p2, p3, p4, pdst, pend, pj, pme, pme1, pme2, pn, psrc ;
+
+/*
+ * Any parameter (Pe [...] or pfree) or local variable starting with "p" (for
+ * Pointer) is an index into Iw, and all indices into Iw use variables starting
+ * with "p."  The only exception to this rule is the iwlen input argument.
+ *
+ * p:           pointer into lots of things
+ * p1:          Pe [i] for some variable i (start of element list)
+ * p2:          Pe [i] + Elen [i] -  1 for some variable i
+ * p3:          index of first supervariable in clean list
+ * p4:		
+ * pdst:        destination pointer, for compression
+ * pend:        end of memory to compress
+ * pj:          pointer into an element or variable
+ * pme:         pointer into the current element (pme1...pme2)
+ * pme1:        the current element, me, is stored in Iw [pme1...pme2]
+ * pme2:        the end of the current element
+ * pn:          pointer into a "clean" variable, also used to compress
+ * psrc:        source pointer, for compression
+*/
+
+/* ========================================================================= */
+/*  INITIALIZATIONS */
+/* ========================================================================= */
+
+    /* Note that this restriction on iwlen is slightly more restrictive than
+     * what is actually required in AMD_2.  AMD_2 can operate with no elbow
+     * room at all, but it will be slow.  For better performance, at least
+     * size-n elbow room is enforced. */
+    ASSERT (iwlen >= pfree + n) ;
+    ASSERT (n > 0) ;
+
+    /* initialize output statistics */
+    lnz = 0 ;
+    ndiv = 0 ;
+    nms_lu = 0 ;
+    nms_ldl = 0 ;
+    dmax = 1 ;
+    me = EMPTY ;
+
+    mindeg = 0 ;
+    ncmpa = 0 ;
+    nel = 0 ;
+    lemax = 0 ;
+
+    /* get control parameters */
+    if (Control != (scs_float *) NULL)
+    {
+	alpha = Control [AMD_DENSE] ;
+	aggressive = (Control [AMD_AGGRESSIVE] != 0) ;
+    }
+    else
+    {
+	alpha = AMD_DEFAULT_DENSE ;
+	aggressive = AMD_DEFAULT_AGGRESSIVE ;
+    }
+    /* Note: if alpha is NaN, this is undefined: */
+    if (alpha < 0)
+    {
+	/* only remove completely dense rows/columns */
+	dense = n-2 ;
+    }
+    else
+    {
+	dense = alpha * sqrt ((scs_float) n) ;
+    }
+    dense = MAX (16, dense) ;
+    dense = MIN (n,  dense) ;
+    AMD_DEBUG1 (("\n\nAMD (debug), alpha %g, aggr. "ID"\n",
+	alpha, aggressive)) ;
+
+    for (i = 0 ; i < n ; i++)
+    {
+	Last [i] = EMPTY ;
+	Head [i] = EMPTY ;
+	Next [i] = EMPTY ;
+	/* if separate Hhead array is used for hash buckets: *
+	Hhead [i] = EMPTY ;
+	*/
+	Nv [i] = 1 ;
+	W [i] = 1 ;
+	Elen [i] = 0 ;
+	Degree [i] = Len [i] ;
+    }
+
+#ifndef NDEBUG
+    AMD_DEBUG1 (("\n======Nel "ID" initial\n", nel)) ;
+    AMD_dump (n, Pe, Iw, Len, iwlen, pfree, Nv, Next, Last,
+		Head, Elen, Degree, W, -1) ;
+#endif
+
+    /* initialize wflg */
+    wbig = Int_MAX - n ;
+    wflg = clear_flag (0, wbig, W, n) ;
+
+    /* --------------------------------------------------------------------- */
+    /* initialize degree lists and eliminate dense and empty rows */
+    /* --------------------------------------------------------------------- */
+
+    ndense = 0 ;
+
+    for (i = 0 ; i < n ; i++)
+    {
+	deg = Degree [i] ;
+	ASSERT (deg >= 0 && deg < n) ;
+	if (deg == 0)
+	{
+
+	    /* -------------------------------------------------------------
+	     * we have a variable that can be eliminated at once because
+	     * there is no off-diagonal non-zero in its row.  Note that
+	     * Nv [i] = 1 for an empty variable i.  It is treated just
+	     * the same as an eliminated element i.
+	     * ------------------------------------------------------------- */
+
+	    Elen [i] = FLIP (1) ;
+	    nel++ ;
+	    Pe [i] = EMPTY ;
+	    W [i] = 0 ;
+
+	}
+	else if (deg > dense)
+	{
+
+	    /* -------------------------------------------------------------
+	     * Dense variables are not treated as elements, but as unordered,
+	     * non-principal variables that have no parent.  They do not take
+	     * part in the postorder, since Nv [i] = 0.  Note that the Fortran
+	     * version does not have this option.
+	     * ------------------------------------------------------------- */
+
+	    AMD_DEBUG1 (("Dense node "ID" degree "ID"\n", i, deg)) ;
+	    ndense++ ;
+	    Nv [i] = 0 ;		/* do not postorder this node */
+	    Elen [i] = EMPTY ;
+	    nel++ ;
+	    Pe [i] = EMPTY ;
+
+	}
+	else
+	{
+
+	    /* -------------------------------------------------------------
+	     * place i in the degree list corresponding to its degree
+	     * ------------------------------------------------------------- */
+
+	    inext = Head [deg] ;
+	    ASSERT (inext >= EMPTY && inext < n) ;
+	    if (inext != EMPTY) Last [inext] = i ;
+	    Next [i] = inext ;
+	    Head [deg] = i ;
+
+	}
+    }
+
+/* ========================================================================= */
+/* WHILE (selecting pivots) DO */
+/* ========================================================================= */
+
+    while (nel < n)
+    {
+
+#ifndef NDEBUG
+	AMD_DEBUG1 (("\n======Nel "ID"\n", nel)) ;
+	if (AMD_debug >= 2)
+	{
+	    AMD_dump (n, Pe, Iw, Len, iwlen, pfree, Nv, Next,
+		    Last, Head, Elen, Degree, W, nel) ;
+	}
+#endif
+
+/* ========================================================================= */
+/* GET PIVOT OF MINIMUM DEGREE */
+/* ========================================================================= */
+
+	/* ----------------------------------------------------------------- */
+	/* find next supervariable for elimination */
+	/* ----------------------------------------------------------------- */
+
+	ASSERT (mindeg >= 0 && mindeg < n) ;
+	for (deg = mindeg ; deg < n ; deg++)
+	{
+	    me = Head [deg] ;
+	    if (me != EMPTY) break ;
+	}
+	mindeg = deg ;
+	ASSERT (me >= 0 && me < n) ;
+	AMD_DEBUG1 (("=================me: "ID"\n", me)) ;
+
+	/* ----------------------------------------------------------------- */
+	/* remove chosen variable from link list */
+	/* ----------------------------------------------------------------- */
+
+	inext = Next [me] ;
+	ASSERT (inext >= EMPTY && inext < n) ;
+	if (inext != EMPTY) Last [inext] = EMPTY ;
+	Head [deg] = inext ;
+
+	/* ----------------------------------------------------------------- */
+	/* me represents the elimination of pivots nel to nel+Nv[me]-1. */
+	/* place me itself as the first in this set. */
+	/* ----------------------------------------------------------------- */
+
+	elenme = Elen [me] ;
+	nvpiv = Nv [me] ;
+	ASSERT (nvpiv > 0) ;
+	nel += nvpiv ;
+
+/* ========================================================================= */
+/* CONSTRUCT NEW ELEMENT */
+/* ========================================================================= */
+
+	/* -----------------------------------------------------------------
+	 * At this point, me is the pivotal supervariable.  It will be
+	 * converted into the current element.  Scan list of the pivotal
+	 * supervariable, me, setting tree pointers and constructing new list
+	 * of supervariables for the new element, me.  p is a pointer to the
+	 * current position in the old list.
+	 * ----------------------------------------------------------------- */
+
+	/* flag the variable "me" as being in Lme by negating Nv [me] */
+	Nv [me] = -nvpiv ;
+	degme = 0 ;
+	ASSERT (Pe [me] >= 0 && Pe [me] < iwlen) ;
+
+	if (elenme == 0)
+	{
+
+	    /* ------------------------------------------------------------- */
+	    /* construct the new element in place */
+	    /* ------------------------------------------------------------- */
+
+	    pme1 = Pe [me] ;
+	    pme2 = pme1 - 1 ;
+
+	    for (p = pme1 ; p <= pme1 + Len [me] - 1 ; p++)
+	    {
+		i = Iw [p] ;
+		ASSERT (i >= 0 && i < n && Nv [i] >= 0) ;
+		nvi = Nv [i] ;
+		if (nvi > 0)
+		{
+
+		    /* ----------------------------------------------------- */
+		    /* i is a principal variable not yet placed in Lme. */
+		    /* store i in new list */
+		    /* ----------------------------------------------------- */
+
+		    /* flag i as being in Lme by negating Nv [i] */
+		    degme += nvi ;
+		    Nv [i] = -nvi ;
+		    Iw [++pme2] = i ;
+
+		    /* ----------------------------------------------------- */
+		    /* remove variable i from degree list. */
+		    /* ----------------------------------------------------- */
+
+		    ilast = Last [i] ;
+		    inext = Next [i] ;
+		    ASSERT (ilast >= EMPTY && ilast < n) ;
+		    ASSERT (inext >= EMPTY && inext < n) ;
+		    if (inext != EMPTY) Last [inext] = ilast ;
+		    if (ilast != EMPTY)
+		    {
+			Next [ilast] = inext ;
+		    }
+		    else
+		    {
+			/* i is at the head of the degree list */
+			ASSERT (Degree [i] >= 0 && Degree [i] < n) ;
+			Head [Degree [i]] = inext ;
+		    }
+		}
+	    }
+	}
+	else
+	{
+
+	    /* ------------------------------------------------------------- */
+	    /* construct the new element in empty space, Iw [pfree ...] */
+	    /* ------------------------------------------------------------- */
+
+	    p = Pe [me] ;
+	    pme1 = pfree ;
+	    slenme = Len [me] - elenme ;
+
+	    for (knt1 = 1 ; knt1 <= elenme + 1 ; knt1++)
+	    {
+
+		if (knt1 > elenme)
+		{
+		    /* search the supervariables in me. */
+		    e = me ;
+		    pj = p ;
+		    ln = slenme ;
+		    AMD_DEBUG2 (("Search sv: "ID" "ID" "ID"\n", me,pj,ln)) ;
+		}
+		else
+		{
+		    /* search the elements in me. */
+		    e = Iw [p++] ;
+		    ASSERT (e >= 0 && e < n) ;
+		    pj = Pe [e] ;
+		    ln = Len [e] ;
+		    AMD_DEBUG2 (("Search element e "ID" in me "ID"\n", e,me)) ;
+		    ASSERT (Elen [e] < EMPTY && W [e] > 0 && pj >= 0) ;
+		}
+		ASSERT (ln >= 0 && (ln == 0 || (pj >= 0 && pj < iwlen))) ;
+
+		/* ---------------------------------------------------------
+		 * search for different supervariables and add them to the
+		 * new list, compressing when necessary. this loop is
+		 * executed once for each element in the list and once for
+		 * all the supervariables in the list.
+		 * --------------------------------------------------------- */
+
+		for (knt2 = 1 ; knt2 <= ln ; knt2++)
+		{
+		    i = Iw [pj++] ;
+		    ASSERT (i >= 0 && i < n && (i == me || Elen [i] >= EMPTY));
+		    nvi = Nv [i] ;
+		    AMD_DEBUG2 ((": "ID" "ID" "ID" "ID"\n",
+				i, Elen [i], Nv [i], wflg)) ;
+
+		    if (nvi > 0)
+		    {
+
+			/* ------------------------------------------------- */
+			/* compress Iw, if necessary */
+			/* ------------------------------------------------- */
+
+			if (pfree >= iwlen)
+			{
+
+			    AMD_DEBUG1 (("GARBAGE COLLECTION\n")) ;
+
+			    /* prepare for compressing Iw by adjusting pointers
+			     * and lengths so that the lists being searched in
+			     * the inner and outer loops contain only the
+			     * remaining entries. */
+
+			    Pe [me] = p ;
+			    Len [me] -= knt1 ;
+			    /* check if nothing left of supervariable me */
+			    if (Len [me] == 0) Pe [me] = EMPTY ;
+			    Pe [e] = pj ;
+			    Len [e] = ln - knt2 ;
+			    /* nothing left of element e */
+			    if (Len [e] == 0) Pe [e] = EMPTY ;
+
+			    ncmpa++ ;	/* one more garbage collection */
+
+			    /* store first entry of each object in Pe */
+			    /* FLIP the first entry in each object */
+			    for (j = 0 ; j < n ; j++)
+			    {
+				pn = Pe [j] ;
+				if (pn >= 0)
+				{
+				    ASSERT (pn >= 0 && pn < iwlen) ;
+				    Pe [j] = Iw [pn] ;
+				    Iw [pn] = FLIP (j) ;
+				}
+			    }
+
+			    /* psrc/pdst point to source/destination */
+			    psrc = 0 ;
+			    pdst = 0 ;
+			    pend = pme1 - 1 ;
+
+			    while (psrc <= pend)
+			    {
+				/* search for next FLIP'd entry */
+				j = FLIP (Iw [psrc++]) ;
+				if (j >= 0)
+				{
+				    AMD_DEBUG2 (("Got object j: "ID"\n", j)) ;
+				    Iw [pdst] = Pe [j] ;
+				    Pe [j] = pdst++ ;
+				    lenj = Len [j] ;
+				    /* copy from source to destination */
+				    for (knt3 = 0 ; knt3 <= lenj - 2 ; knt3++)
+				    {
+					Iw [pdst++] = Iw [psrc++] ;
+				    }
+				}
+			    }
+
+			    /* move the new partially-constructed element */
+			    p1 = pdst ;
+			    for (psrc = pme1 ; psrc <= pfree-1 ; psrc++)
+			    {
+				Iw [pdst++] = Iw [psrc] ;
+			    }
+			    pme1 = p1 ;
+			    pfree = pdst ;
+			    pj = Pe [e] ;
+			    p = Pe [me] ;
+
+			}
+
+			/* ------------------------------------------------- */
+			/* i is a principal variable not yet placed in Lme */
+			/* store i in new list */
+			/* ------------------------------------------------- */
+
+			/* flag i as being in Lme by negating Nv [i] */
+			degme += nvi ;
+			Nv [i] = -nvi ;
+			Iw [pfree++] = i ;
+			AMD_DEBUG2 (("     s: "ID"     nv "ID"\n", i, Nv [i]));
+
+			/* ------------------------------------------------- */
+			/* remove variable i from degree link list */
+			/* ------------------------------------------------- */
+
+			ilast = Last [i] ;
+			inext = Next [i] ;
+			ASSERT (ilast >= EMPTY && ilast < n) ;
+			ASSERT (inext >= EMPTY && inext < n) ;
+			if (inext != EMPTY) Last [inext] = ilast ;
+			if (ilast != EMPTY)
+			{
+			    Next [ilast] = inext ;
+			}
+			else
+			{
+			    /* i is at the head of the degree list */
+			    ASSERT (Degree [i] >= 0 && Degree [i] < n) ;
+			    Head [Degree [i]] = inext ;
+			}
+		    }
+		}
+
+		if (e != me)
+		{
+		    /* set tree pointer and flag to indicate element e is
+		     * absorbed into new element me (the parent of e is me) */
+		    AMD_DEBUG1 ((" Element "ID" => "ID"\n", e, me)) ;
+		    Pe [e] = FLIP (me) ;
+		    W [e] = 0 ;
+		}
+	    }
+
+	    pme2 = pfree - 1 ;
+	}
+
+	/* ----------------------------------------------------------------- */
+	/* me has now been converted into an element in Iw [pme1..pme2] */
+	/* ----------------------------------------------------------------- */
+
+	/* degme holds the external degree of new element */
+	Degree [me] = degme ;
+	Pe [me] = pme1 ;
+	Len [me] = pme2 - pme1 + 1 ;
+	ASSERT (Pe [me] >= 0 && Pe [me] < iwlen) ;
+
+	Elen [me] = FLIP (nvpiv + degme) ;
+	/* FLIP (Elen (me)) is now the degree of pivot (including
+	 * diagonal part). */
+
+#ifndef NDEBUG
+	AMD_DEBUG2 (("New element structure: length= "ID"\n", pme2-pme1+1)) ;
+	for (pme = pme1 ; pme <= pme2 ; pme++) AMD_DEBUG3 ((" "ID"", Iw[pme]));
+	AMD_DEBUG3 (("\n")) ;
+#endif
+
+	/* ----------------------------------------------------------------- */
+	/* make sure that wflg is not too large. */
+	/* ----------------------------------------------------------------- */
+
+	/* With the current value of wflg, wflg+n must not cause integer
+	 * overflow */
+
+	wflg = clear_flag (wflg, wbig, W, n) ;
+
+/* ========================================================================= */
+/* COMPUTE (W [e] - wflg) = |Le\Lme| FOR ALL ELEMENTS */
+/* ========================================================================= */
+
+	/* -----------------------------------------------------------------
+	 * Scan 1:  compute the external degrees of previous elements with
+	 * respect to the current element.  That is:
+	 *       (W [e] - wflg) = |Le \ Lme|
+	 * for each element e that appears in any supervariable in Lme.  The
+	 * notation Le refers to the pattern (list of supervariables) of a
+	 * previous element e, where e is not yet absorbed, stored in
+	 * Iw [Pe [e] + 1 ... Pe [e] + Len [e]].  The notation Lme
+	 * refers to the pattern of the current element (stored in
+	 * Iw [pme1..pme2]).   If aggressive absorption is enabled, and
+	 * (W [e] - wflg) becomes zero, then the element e will be absorbed
+	 * in Scan 2.
+	 * ----------------------------------------------------------------- */
+
+	AMD_DEBUG2 (("me: ")) ;
+	for (pme = pme1 ; pme <= pme2 ; pme++)
+	{
+	    i = Iw [pme] ;
+	    ASSERT (i >= 0 && i < n) ;
+	    eln = Elen [i] ;
+	    AMD_DEBUG3 ((""ID" Elen "ID": \n", i, eln)) ;
+	    if (eln > 0)
+	    {
+		/* note that Nv [i] has been negated to denote i in Lme: */
+		nvi = -Nv [i] ;
+		ASSERT (nvi > 0 && Pe [i] >= 0 && Pe [i] < iwlen) ;
+		wnvi = wflg - nvi ;
+		for (p = Pe [i] ; p <= Pe [i] + eln - 1 ; p++)
+		{
+		    e = Iw [p] ;
+		    ASSERT (e >= 0 && e < n) ;
+		    we = W [e] ;
+		    AMD_DEBUG4 (("    e "ID" we "ID" ", e, we)) ;
+		    if (we >= wflg)
+		    {
+			/* unabsorbed element e has been seen in this loop */
+			AMD_DEBUG4 (("    unabsorbed, first time seen")) ;
+			we -= nvi ;
+		    }
+		    else if (we != 0)
+		    {
+			/* e is an unabsorbed element */
+			/* this is the first we have seen e in all of Scan 1 */
+			AMD_DEBUG4 (("    unabsorbed")) ;
+			we = Degree [e] + wnvi ;
+		    }
+		    AMD_DEBUG4 (("\n")) ;
+		    W [e] = we ;
+		}
+	    }
+	}
+	AMD_DEBUG2 (("\n")) ;
+
+/* ========================================================================= */
+/* DEGREE UPDATE AND ELEMENT ABSORPTION */
+/* ========================================================================= */
+
+	/* -----------------------------------------------------------------
+	 * Scan 2:  for each i in Lme, sum up the degree of Lme (which is
+	 * degme), plus the sum of the external degrees of each Le for the
+	 * elements e appearing within i, plus the supervariables in i.
+	 * Place i in hash list.
+	 * ----------------------------------------------------------------- */
+
+	for (pme = pme1 ; pme <= pme2 ; pme++)
+	{
+	    i = Iw [pme] ;
+	    ASSERT (i >= 0 && i < n && Nv [i] < 0 && Elen [i] >= 0) ;
+	    AMD_DEBUG2 (("Updating: i "ID" "ID" "ID"\n", i, Elen[i], Len [i]));
+	    p1 = Pe [i] ;
+	    p2 = p1 + Elen [i] - 1 ;
+	    pn = p1 ;
+	    hash = 0 ;
+	    deg = 0 ;
+	    ASSERT (p1 >= 0 && p1 < iwlen && p2 >= -1 && p2 < iwlen) ;
+
+	    /* ------------------------------------------------------------- */
+	    /* scan the element list associated with supervariable i */
+	    /* ------------------------------------------------------------- */
+
+	    /* UMFPACK/MA38-style approximate degree: */
+	    if (aggressive)
+	    {
+		for (p = p1 ; p <= p2 ; p++)
+		{
+		    e = Iw [p] ;
+		    ASSERT (e >= 0 && e < n) ;
+		    we = W [e] ;
+		    if (we != 0)
+		    {
+			/* e is an unabsorbed element */
+			/* dext = | Le \ Lme | */
+			dext = we - wflg ;
+			if (dext > 0)
+			{
+			    deg += dext ;
+			    Iw [pn++] = e ;
+			    hash += e ;
+			    AMD_DEBUG4 ((" e: "ID" hash = "ID"\n",e,hash)) ;
+			}
+			else
+			{
+			    /* external degree of e is zero, absorb e into me*/
+			    AMD_DEBUG1 ((" Element "ID" =>"ID" (aggressive)\n",
+				e, me)) ;
+			    ASSERT (dext == 0) ;
+			    Pe [e] = FLIP (me) ;
+			    W [e] = 0 ;
+			}
+		    }
+		}
+	    }
+	    else
+	    {
+		for (p = p1 ; p <= p2 ; p++)
+		{
+		    e = Iw [p] ;
+		    ASSERT (e >= 0 && e < n) ;
+		    we = W [e] ;
+		    if (we != 0)
+		    {
+			/* e is an unabsorbed element */
+			dext = we - wflg ;
+			ASSERT (dext >= 0) ;
+			deg += dext ;
+			Iw [pn++] = e ;
+			hash += e ;
+			AMD_DEBUG4 (("	e: "ID" hash = "ID"\n",e,hash)) ;
+		    }
+		}
+	    }
+
+	    /* count the number of elements in i (including me): */
+	    Elen [i] = pn - p1 + 1 ;
+
+	    /* ------------------------------------------------------------- */
+	    /* scan the supervariables in the list associated with i */
+	    /* ------------------------------------------------------------- */
+
+	    /* The bulk of the AMD run time is typically spent in this loop,
+	     * particularly if the matrix has many dense rows that are not
+	     * removed prior to ordering. */
+	    p3 = pn ;
+	    p4 = p1 + Len [i] ;
+	    for (p = p2 + 1 ; p < p4 ; p++)
+	    {
+		j = Iw [p] ;
+		ASSERT (j >= 0 && j < n) ;
+		nvj = Nv [j] ;
+		if (nvj > 0)
+		{
+		    /* j is unabsorbed, and not in Lme. */
+		    /* add to degree and add to new list */
+		    deg += nvj ;
+		    Iw [pn++] = j ;
+		    hash += j ;
+		    AMD_DEBUG4 (("  s: "ID" hash "ID" Nv[j]= "ID"\n",
+				j, hash, nvj)) ;
+		}
+	    }
+
+	    /* ------------------------------------------------------------- */
+	    /* update the degree and check for mass elimination */
+	    /* ------------------------------------------------------------- */
+
+	    /* with aggressive absorption, deg==0 is identical to the
+	     * Elen [i] == 1 && p3 == pn test, below. */
+	    ASSERT (IMPLIES (aggressive, (deg==0) == (Elen[i]==1 && p3==pn))) ;
+
+	    if (Elen [i] == 1 && p3 == pn)
+	    {
+
+		/* --------------------------------------------------------- */
+		/* mass elimination */
+		/* --------------------------------------------------------- */
+
+		/* There is nothing left of this node except for an edge to
+		 * the current pivot element.  Elen [i] is 1, and there are
+		 * no variables adjacent to node i.  Absorb i into the
+		 * current pivot element, me.  Note that if there are two or
+		 * more mass eliminations, fillin due to mass elimination is
+		 * possible within the nvpiv-by-nvpiv pivot block.  It is this
+		 * step that causes AMD's analysis to be an upper bound.
+		 *
+		 * The reason is that the selected pivot has a lower
+		 * approximate degree than the true degree of the two mass
+		 * eliminated nodes.  There is no edge between the two mass
+		 * eliminated nodes.  They are merged with the current pivot
+		 * anyway.
+		 *
+		 * No fillin occurs in the Schur complement, in any case,
+		 * and this effect does not decrease the quality of the
+		 * ordering itself, just the quality of the nonzero and
+		 * flop count analysis.  It also means that the post-ordering
+		 * is not an exact elimination tree post-ordering. */
+
+		AMD_DEBUG1 (("  MASS i "ID" => parent e "ID"\n", i, me)) ;
+		Pe [i] = FLIP (me) ;
+		nvi = -Nv [i] ;
+		degme -= nvi ;
+		nvpiv += nvi ;
+		nel += nvi ;
+		Nv [i] = 0 ;
+		Elen [i] = EMPTY ;
+
+	    }
+	    else
+	    {
+
+		/* --------------------------------------------------------- */
+		/* update the upper-bound degree of i */
+		/* --------------------------------------------------------- */
+
+		/* the following degree does not yet include the size
+		 * of the current element, which is added later: */
+
+		Degree [i] = MIN (Degree [i], deg) ;
+
+		/* --------------------------------------------------------- */
+		/* add me to the list for i */
+		/* --------------------------------------------------------- */
+
+		/* move first supervariable to end of list */
+		Iw [pn] = Iw [p3] ;
+		/* move first element to end of element part of list */
+		Iw [p3] = Iw [p1] ;
+		/* add new element, me, to front of list. */
+		Iw [p1] = me ;
+		/* store the new length of the list in Len [i] */
+		Len [i] = pn - p1 + 1 ;
+
+		/* --------------------------------------------------------- */
+		/* place in hash bucket.  Save hash key of i in Last [i]. */
+		/* --------------------------------------------------------- */
+
+		/* NOTE: this can fail if hash is negative, because the ANSI C
+		 * standard does not define a % b when a and/or b are negative.
+		 * That's why hash is defined as an unsigned Int, to avoid this
+		 * problem. */
+		hash = hash % n ;
+		ASSERT (((Int) hash) >= 0 && ((Int) hash) < n) ;
+
+		/* if the Hhead array is not used: */
+		j = Head [hash] ;
+		if (j <= EMPTY)
+		{
+		    /* degree list is empty, hash head is FLIP (j) */
+		    Next [i] = FLIP (j) ;
+		    Head [hash] = FLIP (i) ;
+		}
+		else
+		{
+		    /* degree list is not empty, use Last [Head [hash]] as
+		     * hash head. */
+		    Next [i] = Last [j] ;
+		    Last [j] = i ;
+		}
+
+		/* if a separate Hhead array is used: *
+		Next [i] = Hhead [hash] ;
+		Hhead [hash] = i ;
+		*/
+
+		Last [i] = hash ;
+	    }
+	}
+
+	Degree [me] = degme ;
+
+	/* ----------------------------------------------------------------- */
+	/* Clear the counter array, W [...], by incrementing wflg. */
+	/* ----------------------------------------------------------------- */
+
+	/* make sure that wflg+n does not cause integer overflow */
+	lemax =  MAX (lemax, degme) ;
+	wflg += lemax ;
+	wflg = clear_flag (wflg, wbig, W, n) ;
+	/*  at this point, W [0..n-1] < wflg holds */
+
+/* ========================================================================= */
+/* SUPERVARIABLE DETECTION */
+/* ========================================================================= */
+
+	AMD_DEBUG1 (("Detecting supervariables:\n")) ;
+	for (pme = pme1 ; pme <= pme2 ; pme++)
+	{
+	    i = Iw [pme] ;
+	    ASSERT (i >= 0 && i < n) ;
+	    AMD_DEBUG2 (("Consider i "ID" nv "ID"\n", i, Nv [i])) ;
+	    if (Nv [i] < 0)
+	    {
+		/* i is a principal variable in Lme */
+
+		/* ---------------------------------------------------------
+		 * examine all hash buckets with 2 or more variables.  We do
+		 * this by examing all unique hash keys for supervariables in
+		 * the pattern Lme of the current element, me
+		 * --------------------------------------------------------- */
+
+		/* let i = head of hash bucket, and empty the hash bucket */
+		ASSERT (Last [i] >= 0 && Last [i] < n) ;
+		hash = Last [i] ;
+
+		/* if Hhead array is not used: */
+		j = Head [hash] ;
+		if (j == EMPTY)
+		{
+		    /* hash bucket and degree list are both empty */
+		    i = EMPTY ;
+		}
+		else if (j < EMPTY)
+		{
+		    /* degree list is empty */
+		    i = FLIP (j) ;
+		    Head [hash] = EMPTY ;
+		}
+		else
+		{
+		    /* degree list is not empty, restore Last [j] of head j */
+		    i = Last [j] ;
+		    Last [j] = EMPTY ;
+		}
+
+		/* if separate Hhead array is used: *
+		i = Hhead [hash] ;
+		Hhead [hash] = EMPTY ;
+		*/
+
+		ASSERT (i >= EMPTY && i < n) ;
+		AMD_DEBUG2 (("----i "ID" hash "ID"\n", i, hash)) ;
+
+		while (i != EMPTY && Next [i] != EMPTY)
+		{
+
+		    /* -----------------------------------------------------
+		     * this bucket has one or more variables following i.
+		     * scan all of them to see if i can absorb any entries
+		     * that follow i in hash bucket.  Scatter i into w.
+		     * ----------------------------------------------------- */
+
+		    ln = Len [i] ;
+		    eln = Elen [i] ;
+		    ASSERT (ln >= 0 && eln >= 0) ;
+		    ASSERT (Pe [i] >= 0 && Pe [i] < iwlen) ;
+		    /* do not flag the first element in the list (me) */
+		    for (p = Pe [i] + 1 ; p <= Pe [i] + ln - 1 ; p++)
+		    {
+			ASSERT (Iw [p] >= 0 && Iw [p] < n) ;
+			W [Iw [p]] = wflg ;
+		    }
+
+		    /* ----------------------------------------------------- */
+		    /* scan every other entry j following i in bucket */
+		    /* ----------------------------------------------------- */
+
+		    jlast = i ;
+		    j = Next [i] ;
+		    ASSERT (j >= EMPTY && j < n) ;
+
+		    while (j != EMPTY)
+		    {
+			/* ------------------------------------------------- */
+			/* check if j and i have identical nonzero pattern */
+			/* ------------------------------------------------- */
+
+			AMD_DEBUG3 (("compare i "ID" and j "ID"\n", i,j)) ;
+
+			/* check if i and j have the same Len and Elen */
+			ASSERT (Len [j] >= 0 && Elen [j] >= 0) ;
+			ASSERT (Pe [j] >= 0 && Pe [j] < iwlen) ;
+			ok = (Len [j] == ln) && (Elen [j] == eln) ;
+			/* skip the first element in the list (me) */
+			for (p = Pe [j] + 1 ; ok && p <= Pe [j] + ln - 1 ; p++)
+			{
+			    ASSERT (Iw [p] >= 0 && Iw [p] < n) ;
+			    if (W [Iw [p]] != wflg) ok = 0 ;
+			}
+			if (ok)
+			{
+			    /* --------------------------------------------- */
+			    /* found it!  j can be absorbed into i */
+			    /* --------------------------------------------- */
+
+			    AMD_DEBUG1 (("found it! j "ID" => i "ID"\n", j,i));
+			    Pe [j] = FLIP (i) ;
+			    /* both Nv [i] and Nv [j] are negated since they */
+			    /* are in Lme, and the absolute values of each */
+			    /* are the number of variables in i and j: */
+			    Nv [i] += Nv [j] ;
+			    Nv [j] = 0 ;
+			    Elen [j] = EMPTY ;
+			    /* delete j from hash bucket */
+			    ASSERT (j != Next [j]) ;
+			    j = Next [j] ;
+			    Next [jlast] = j ;
+
+			}
+			else
+			{
+			    /* j cannot be absorbed into i */
+			    jlast = j ;
+			    ASSERT (j != Next [j]) ;
+			    j = Next [j] ;
+			}
+			ASSERT (j >= EMPTY && j < n) ;
+		    }
+
+		    /* -----------------------------------------------------
+		     * no more variables can be absorbed into i
+		     * go to next i in bucket and clear flag array
+		     * ----------------------------------------------------- */
+
+		    wflg++ ;
+		    i = Next [i] ;
+		    ASSERT (i >= EMPTY && i < n) ;
+
+		}
+	    }
+	}
+	AMD_DEBUG2 (("detect done\n")) ;
+
+/* ========================================================================= */
+/* RESTORE DEGREE LISTS AND REMOVE NONPRINCIPAL SUPERVARIABLES FROM ELEMENT */
+/* ========================================================================= */
+
+	p = pme1 ;
+	nleft = n - nel ;
+	for (pme = pme1 ; pme <= pme2 ; pme++)
+	{
+	    i = Iw [pme] ;
+	    ASSERT (i >= 0 && i < n) ;
+	    nvi = -Nv [i] ;
+	    AMD_DEBUG3 (("Restore i "ID" "ID"\n", i, nvi)) ;
+	    if (nvi > 0)
+	    {
+		/* i is a principal variable in Lme */
+		/* restore Nv [i] to signify that i is principal */
+		Nv [i] = nvi ;
+
+		/* --------------------------------------------------------- */
+		/* compute the external degree (add size of current element) */
+		/* --------------------------------------------------------- */
+
+		deg = Degree [i] + degme - nvi ;
+		deg = MIN (deg, nleft - nvi) ;
+		ASSERT (IMPLIES (aggressive, deg > 0) && deg >= 0 && deg < n) ;
+
+		/* --------------------------------------------------------- */
+		/* place the supervariable at the head of the degree list */
+		/* --------------------------------------------------------- */
+
+		inext = Head [deg] ;
+		ASSERT (inext >= EMPTY && inext < n) ;
+		if (inext != EMPTY) Last [inext] = i ;
+		Next [i] = inext ;
+		Last [i] = EMPTY ;
+		Head [deg] = i ;
+
+		/* --------------------------------------------------------- */
+		/* save the new degree, and find the minimum degree */
+		/* --------------------------------------------------------- */
+
+		mindeg = MIN (mindeg, deg) ;
+		Degree [i] = deg ;
+
+		/* --------------------------------------------------------- */
+		/* place the supervariable in the element pattern */
+		/* --------------------------------------------------------- */
+
+		Iw [p++] = i ;
+
+	    }
+	}
+	AMD_DEBUG2 (("restore done\n")) ;
+
+/* ========================================================================= */
+/* FINALIZE THE NEW ELEMENT */
+/* ========================================================================= */
+
+	AMD_DEBUG2 (("ME = "ID" DONE\n", me)) ;
+	Nv [me] = nvpiv ;
+	/* save the length of the list for the new element me */
+	Len [me] = p - pme1 ;
+	if (Len [me] == 0)
+	{
+	    /* there is nothing left of the current pivot element */
+	    /* it is a root of the assembly tree */
+	    Pe [me] = EMPTY ;
+	    W [me] = 0 ;
+	}
+	if (elenme != 0)
+	{
+	    /* element was not constructed in place: deallocate part of */
+	    /* it since newly nonprincipal variables may have been removed */
+	    pfree = p ;
+	}
+
+	/* The new element has nvpiv pivots and the size of the contribution
+	 * block for a multifrontal method is degme-by-degme, not including
+	 * the "dense" rows/columns.  If the "dense" rows/columns are included,
+	 * the frontal matrix is no larger than
+	 * (degme+ndense)-by-(degme+ndense).
+	 */
+
+	if (Info != (scs_float *) NULL)
+	{
+	    f = nvpiv ;
+	    r = degme + ndense ;
+	    dmax = MAX (dmax, f + r) ;
+
+	    /* number of nonzeros in L (excluding the diagonal) */
+	    lnzme = f*r + (f-1)*f/2 ;
+	    lnz += lnzme ;
+
+	    /* number of divide operations for LDL' and for LU */
+	    ndiv += lnzme ;
+
+	    /* number of multiply-subtract pairs for LU */
+	    s = f*r*r + r*(f-1)*f + (f-1)*f*(2*f-1)/6 ;
+	    nms_lu += s ;
+
+	    /* number of multiply-subtract pairs for LDL' */
+	    nms_ldl += (s + lnzme)/2 ;
+	}
+
+#ifndef NDEBUG
+	AMD_DEBUG2 (("finalize done nel "ID" n "ID"\n   ::::\n", nel, n)) ;
+	for (pme = Pe [me] ; pme <= Pe [me] + Len [me] - 1 ; pme++)
+	{
+	      AMD_DEBUG3 ((" "ID"", Iw [pme])) ;
+	}
+	AMD_DEBUG3 (("\n")) ;
+#endif
+
+    }
+
+/* ========================================================================= */
+/* DONE SELECTING PIVOTS */
+/* ========================================================================= */
+
+    if (Info != (scs_float *) NULL)
+    {
+
+	/* count the work to factorize the ndense-by-ndense submatrix */
+	f = ndense ;
+	dmax = MAX (dmax, (scs_float) ndense) ;
+
+	/* number of nonzeros in L (excluding the diagonal) */
+	lnzme = (f-1)*f/2 ;
+	lnz += lnzme ;
+
+	/* number of divide operations for LDL' and for LU */
+	ndiv += lnzme ;
+
+	/* number of multiply-subtract pairs for LU */
+	s = (f-1)*f*(2*f-1)/6 ;
+	nms_lu += s ;
+
+	/* number of multiply-subtract pairs for LDL' */
+	nms_ldl += (s + lnzme)/2 ;
+
+	/* number of nz's in L (excl. diagonal) */
+	Info [AMD_LNZ] = lnz ;
+
+	/* number of divide ops for LU and LDL' */
+	Info [AMD_NDIV] = ndiv ;
+
+	/* number of multiply-subtract pairs for LDL' */
+	Info [AMD_NMULTSUBS_LDL] = nms_ldl ;
+
+	/* number of multiply-subtract pairs for LU */
+	Info [AMD_NMULTSUBS_LU] = nms_lu ;
+
+	/* number of "dense" rows/columns */
+	Info [AMD_NDENSE] = ndense ;
+
+	/* largest front is dmax-by-dmax */
+	Info [AMD_DMAX] = dmax ;
+
+	/* number of garbage collections in AMD */
+	Info [AMD_NCMPA] = ncmpa ;
+
+	/* successful ordering */
+	Info [AMD_STATUS] = AMD_OK ;
+    }
+
+/* ========================================================================= */
+/* POST-ORDERING */
+/* ========================================================================= */
+
+/* -------------------------------------------------------------------------
+ * Variables at this point:
+ *
+ * Pe: holds the elimination tree.  The parent of j is FLIP (Pe [j]),
+ *	or EMPTY if j is a root.  The tree holds both elements and
+ *	non-principal (unordered) variables absorbed into them.
+ *	Dense variables are non-principal and unordered.
+ *
+ * Elen: holds the size of each element, including the diagonal part.
+ *	FLIP (Elen [e]) > 0 if e is an element.  For unordered
+ *	variables i, Elen [i] is EMPTY.
+ *
+ * Nv: Nv [e] > 0 is the number of pivots represented by the element e.
+ *	For unordered variables i, Nv [i] is zero.
+ *
+ * Contents no longer needed:
+ *	W, Iw, Len, Degree, Head, Next, Last.
+ *
+ * The matrix itself has been destroyed.
+ *
+ * n: the size of the matrix.
+ * No other scalars needed (pfree, iwlen, etc.)
+ * ------------------------------------------------------------------------- */
+
+    /* restore Pe */
+    for (i = 0 ; i < n ; i++)
+    {
+	Pe [i] = FLIP (Pe [i]) ;
+    }
+
+    /* restore Elen, for output information, and for postordering */
+    for (i = 0 ; i < n ; i++)
+    {
+	Elen [i] = FLIP (Elen [i]) ;
+    }
+
+/* Now the parent of j is Pe [j], or EMPTY if j is a root.  Elen [e] > 0
+ * is the size of element e.  Elen [i] is EMPTY for unordered variable i. */
+
+#ifndef NDEBUG
+    AMD_DEBUG2 (("\nTree:\n")) ;
+    for (i = 0 ; i < n ; i++)
+    {
+	AMD_DEBUG2 ((" "ID" parent: "ID"   ", i, Pe [i])) ;
+	ASSERT (Pe [i] >= EMPTY && Pe [i] < n) ;
+	if (Nv [i] > 0)
+	{
+	    /* this is an element */
+	    e = i ;
+	    AMD_DEBUG2 ((" element, size is "ID"\n", Elen [i])) ;
+	    ASSERT (Elen [e] > 0) ;
+	}
+	AMD_DEBUG2 (("\n")) ;
+    }
+    AMD_DEBUG2 (("\nelements:\n")) ;
+    for (e = 0 ; e < n ; e++)
+    {
+	if (Nv [e] > 0)
+	{
+	    AMD_DEBUG3 (("Element e= "ID" size "ID" nv "ID" \n", e,
+		Elen [e], Nv [e])) ;
+	}
+    }
+    AMD_DEBUG2 (("\nvariables:\n")) ;
+    for (i = 0 ; i < n ; i++)
+    {
+	Int cnt ;
+	if (Nv [i] == 0)
+	{
+	    AMD_DEBUG3 (("i unordered: "ID"\n", i)) ;
+	    j = Pe [i] ;
+	    cnt = 0 ;
+	    AMD_DEBUG3 (("  j: "ID"\n", j)) ;
+	    if (j == EMPTY)
+	    {
+		AMD_DEBUG3 (("	i is a dense variable\n")) ;
+	    }
+	    else
+	    {
+		ASSERT (j >= 0 && j < n) ;
+		while (Nv [j] == 0)
+		{
+		    AMD_DEBUG3 (("	j : "ID"\n", j)) ;
+		    j = Pe [j] ;
+		    AMD_DEBUG3 (("	j:: "ID"\n", j)) ;
+		    cnt++ ;
+		    if (cnt > n) break ;
+		}
+		e = j ;
+		AMD_DEBUG3 (("	got to e: "ID"\n", e)) ;
+	    }
+	}
+    }
+#endif
+
+/* ========================================================================= */
+/* compress the paths of the variables */
+/* ========================================================================= */
+
+    for (i = 0 ; i < n ; i++)
+    {
+	if (Nv [i] == 0)
+	{
+
+	    /* -------------------------------------------------------------
+	     * i is an un-ordered row.  Traverse the tree from i until
+	     * reaching an element, e.  The element, e, was the principal
+	     * supervariable of i and all nodes in the path from i to when e
+	     * was selected as pivot.
+	     * ------------------------------------------------------------- */
+
+	    AMD_DEBUG1 (("Path compression, i unordered: "ID"\n", i)) ;
+	    j = Pe [i] ;
+	    ASSERT (j >= EMPTY && j < n) ;
+	    AMD_DEBUG3 (("	j: "ID"\n", j)) ;
+	    if (j == EMPTY)
+	    {
+		/* Skip a dense variable.  It has no parent. */
+		AMD_DEBUG3 (("      i is a dense variable\n")) ;
+		continue ;
+	    }
+
+	    /* while (j is a variable) */
+	    while (Nv [j] == 0)
+	    {
+		AMD_DEBUG3 (("		j : "ID"\n", j)) ;
+		j = Pe [j] ;
+		AMD_DEBUG3 (("		j:: "ID"\n", j)) ;
+		ASSERT (j >= 0 && j < n) ;
+	    }
+	    /* got to an element e */
+	    e = j ;
+	    AMD_DEBUG3 (("got to e: "ID"\n", e)) ;
+
+	    /* -------------------------------------------------------------
+	     * traverse the path again from i to e, and compress the path
+	     * (all nodes point to e).  Path compression allows this code to
+	     * compute in O(n) time.
+	     * ------------------------------------------------------------- */
+
+	    j = i ;
+	    /* while (j is a variable) */
+	    while (Nv [j] == 0)
+	    {
+		jnext = Pe [j] ;
+		AMD_DEBUG3 (("j "ID" jnext "ID"\n", j, jnext)) ;
+		Pe [j] = e ;
+		j = jnext ;
+		ASSERT (j >= 0 && j < n) ;
+	    }
+	}
+    }
+
+/* ========================================================================= */
+/* postorder the assembly tree */
+/* ========================================================================= */
+
+    AMD_postorder (n, Pe, Nv, Elen,
+	W,			/* output order */
+	Head, Next, Last) ;	/* workspace */
+
+/* ========================================================================= */
+/* compute output permutation and inverse permutation */
+/* ========================================================================= */
+
+    /* W [e] = k means that element e is the kth element in the new
+     * order.  e is in the range 0 to n-1, and k is in the range 0 to
+     * the number of elements.  Use Head for inverse order. */
+
+    for (k = 0 ; k < n ; k++)
+    {
+	Head [k] = EMPTY ;
+	Next [k] = EMPTY ;
+    }
+    for (e = 0 ; e < n ; e++)
+    {
+	k = W [e] ;
+	ASSERT ((k == EMPTY) == (Nv [e] == 0)) ;
+	if (k != EMPTY)
+	{
+	    ASSERT (k >= 0 && k < n) ;
+	    Head [k] = e ;
+	}
+    }
+
+    /* construct output inverse permutation in Next,
+     * and permutation in Last */
+    nel = 0 ;
+    for (k = 0 ; k < n ; k++)
+    {
+	e = Head [k] ;
+	if (e == EMPTY) break ;
+	ASSERT (e >= 0 && e < n && Nv [e] > 0) ;
+	Next [e] = nel ;
+	nel += Nv [e] ;
+    }
+    ASSERT (nel == n - ndense) ;
+
+    /* order non-principal variables (dense, & those merged into supervar's) */
+    for (i = 0 ; i < n ; i++)
+    {
+	if (Nv [i] == 0)
+	{
+	    e = Pe [i] ;
+	    ASSERT (e >= EMPTY && e < n) ;
+	    if (e != EMPTY)
+	    {
+		/* This is an unordered variable that was merged
+		 * into element e via supernode detection or mass
+		 * elimination of i when e became the pivot element.
+		 * Place i in order just before e. */
+		ASSERT (Next [i] == EMPTY && Nv [e] > 0) ;
+		Next [i] = Next [e] ;
+		Next [e]++ ;
+	    }
+	    else
+	    {
+		/* This is a dense unordered variable, with no parent.
+		 * Place it last in the output order. */
+		Next [i] = nel++ ;
+	    }
+	}
+    }
+    ASSERT (nel == n) ;
+
+    AMD_DEBUG2 (("\n\nPerm:\n")) ;
+    for (i = 0 ; i < n ; i++)
+    {
+	k = Next [i] ;
+	ASSERT (k >= 0 && k < n) ;
+	Last [k] = i ;
+	AMD_DEBUG2 (("   perm ["ID"] = "ID"\n", k, i)) ;
+    }
+}