roebe 0.5.147

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Files changed (2891) hide show
  1. checksums.yaml +7 -0
  2. data/README.md +2982 -0
  3. data/bin/blinking_cursor +7 -0
  4. data/bin/browser +7 -0
  5. data/bin/colourized_tokenitor1 +7 -0
  6. data/bin/colourized_tokenitor2 +7 -0
  7. data/bin/colourized_tokenitor3 +7 -0
  8. data/bin/colourized_tokenitor4 +7 -0
  9. data/bin/colourized_tokenitor5 +7 -0
  10. data/bin/compare_these_two_directories +7 -0
  11. data/bin/create_file_skeleton +7 -0
  12. data/bin/create_my_directories +7 -0
  13. data/bin/create_wpa_supplicant_build_file +7 -0
  14. data/bin/create_zip +7 -0
  15. data/bin/custom_invoke +28 -0
  16. data/bin/delete_empty_files +7 -0
  17. data/bin/display_gcc_version +7 -0
  18. data/bin/do_a_google_search +7 -0
  19. data/bin/extract_gem_file +7 -0
  20. data/bin/fragment_maker +7 -0
  21. data/bin/generate_fstab_file +7 -0
  22. data/bin/handle_xorg_related_boot_phase +7 -0
  23. data/bin/hello_world +7 -0
  24. data/bin/in +7 -0
  25. data/bin/increment_application_version +7 -0
  26. data/bin/increment_application_version_then_push_the_gem +13 -0
  27. data/bin/install_all_registered_fonts +7 -0
  28. data/bin/install_my_addons +114 -0
  29. data/bin/interactive_file_creator +7 -0
  30. data/bin/java_compile_statically +11 -0
  31. data/bin/kill_firefox +7 -0
  32. data/bin/kill_palemoon +7 -0
  33. data/bin/konsole_title +7 -0
  34. data/bin/larrow +7 -0
  35. data/bin/log10 +7 -0
  36. data/bin/menugenerator +7 -0
  37. data/bin/modify_shebang_header +7 -0
  38. data/bin/openpdf1 +7 -0
  39. data/bin/openpdf2 +7 -0
  40. data/bin/openpdf3 +7 -0
  41. data/bin/openpdf4 +7 -0
  42. data/bin/openpdf5 +7 -0
  43. data/bin/openpdf6 +7 -0
  44. data/bin/openpdf7 +7 -0
  45. data/bin/openpdf8 +7 -0
  46. data/bin/openpdf9 +7 -0
  47. data/bin/passwords +7 -0
  48. data/bin/path_generator +7 -0
  49. data/bin/print_this_unicode_symbol +7 -0
  50. data/bin/quick_colour_test +13 -0
  51. data/bin/rarrow +7 -0
  52. data/bin/rdate +7 -0
  53. data/bin/remove_this_substring_from_all_files +7 -0
  54. data/bin/replace_space_with_underscore +7 -0
  55. data/bin/rfirefox +7 -0
  56. data/bin/rinstall2 +7 -0
  57. data/bin/roebe +7 -0
  58. data/bin/roebe_documentation +7 -0
  59. data/bin/roebeshell +11 -0
  60. data/bin/ruby_cat +7 -0
  61. data/bin/ruby_dhcpcd +7 -0
  62. data/bin/run +7 -0
  63. data/bin/rxinitrc +7 -0
  64. data/bin/set_alias_1 +7 -0
  65. data/bin/set_alias_10 +7 -0
  66. data/bin/set_alias_11 +7 -0
  67. data/bin/set_alias_12 +7 -0
  68. data/bin/set_alias_13 +7 -0
  69. data/bin/set_alias_14 +7 -0
  70. data/bin/set_alias_15 +7 -0
  71. data/bin/set_alias_2 +7 -0
  72. data/bin/set_alias_3 +7 -0
  73. data/bin/set_alias_4 +7 -0
  74. data/bin/set_alias_5 +7 -0
  75. data/bin/set_alias_6 +7 -0
  76. data/bin/set_alias_7 +7 -0
  77. data/bin/set_alias_8 +7 -0
  78. data/bin/set_alias_9 +7 -0
  79. data/bin/set_browser +7 -0
  80. data/bin/setpdf1 +7 -0
  81. data/bin/setpdf2 +7 -0
  82. data/bin/setpdf3 +7 -0
  83. data/bin/setpdf4 +7 -0
  84. data/bin/setpdf5 +7 -0
  85. data/bin/setpdf6 +7 -0
  86. data/bin/setpdf7 +7 -0
  87. data/bin/setpdf8 +7 -0
  88. data/bin/setpdf9 +7 -0
  89. data/bin/show_available_users +7 -0
  90. data/bin/show_ten_aliases +7 -0
  91. data/bin/simple_extractor +9 -0
  92. data/bin/start_lighty +7 -0
  93. data/bin/symlink_directories_from_that_directory_to_the_current_directory +7 -0
  94. data/bin/symlink_everything_from_that_directory_to_this_directory +7 -0
  95. data/bin/symlink_files_from_that_directory_to_the_current_directory +7 -0
  96. data/bin/take_screenshot +7 -0
  97. data/bin/to_binary +7 -0
  98. data/bin/tokenitor +7 -0
  99. data/bin/vim_paradise +7 -0
  100. data/bin/wlan +7 -0
  101. data/bin/word_count +7 -0
  102. data/bin/write_what_into +7 -0
  103. data/bin/yaml_check +7 -0
  104. data/doc/README.gen +2942 -0
  105. data/doc/add_ons_for_ruby/README.md +3 -0
  106. data/doc/add_ons_for_ruby/axlsx.md +60 -0
  107. data/doc/add_ons_for_ruby/cgi.md +16 -0
  108. data/doc/add_ons_for_ruby/falcon.md +0 -0
  109. data/doc/add_ons_for_ruby/fxruby.md +14 -0
  110. data/doc/add_ons_for_ruby/glimmer-libui.md +43 -0
  111. data/doc/add_ons_for_ruby/gosu.md +3 -0
  112. data/doc/add_ons_for_ruby/hexapdf.md +66 -0
  113. data/doc/add_ons_for_ruby/jruby.md +199 -0
  114. data/doc/add_ons_for_ruby/kramdown.md +34 -0
  115. data/doc/add_ons_for_ruby/mail.md +51 -0
  116. data/doc/add_ons_for_ruby/opal.md +34 -0
  117. data/doc/add_ons_for_ruby/padrino.md +4 -0
  118. data/doc/add_ons_for_ruby/prawn.md +30 -0
  119. data/doc/add_ons_for_ruby/rack.md +214 -0
  120. data/doc/add_ons_for_ruby/roda.md +6 -0
  121. data/doc/add_ons_for_ruby/sequel.md +51 -0
  122. data/doc/add_ons_for_ruby/tty_box.md +28 -0
  123. data/doc/add_ons_for_ruby/watir.md +30 -0
  124. data/doc/add_ons_for_ruby/whois.md +15 -0
  125. data/doc/core/array.md +65 -0
  126. data/doc/core/blocks.md +38 -0
  127. data/doc/core/enumerator.md +15 -0
  128. data/doc/core/io_console.md +15 -0
  129. data/doc/core/open_uri.md +29 -0
  130. data/doc/core/pp.md +29 -0
  131. data/doc/core/process.md +21 -0
  132. data/doc/core/rbconfig.md +39 -0
  133. data/doc/core/regex.md +23 -0
  134. data/doc/core/rubyvm.md +4 -0
  135. data/doc/core/symbols.md +47 -0
  136. data/doc/core/tempfile.md +34 -0
  137. data/doc/core/tracepoint.md +7 -0
  138. data/doc/core/unicode.md +5 -0
  139. data/doc/core/unprintable_characters.md +17 -0
  140. data/doc/deprecations.md +10 -0
  141. data/doc/diamond_shell_tutorial.cgi +589 -0
  142. data/doc/linux_may_have_issues.md +92 -0
  143. data/doc/misc/how_to_publish.md +49 -0
  144. data/doc/misc/the_initialize_method.md +2 -0
  145. data/doc/misc/the_perfect_book.md +14 -0
  146. data/doc/old_tutorial/README.md +7 -0
  147. data/doc/old_tutorial/old_diashell_tutorial.cgi +2105 -0
  148. data/doc/roebeshell/CONFIGURATION_FOR_THE_ROEBE_SHELL.md +381 -0
  149. data/doc/roebeshell/MANIFESTO_FOR_THE_ROEBE_SHELL_COMPONENT.md +391 -0
  150. data/doc/roebeshell/PHILOSOPHY_OF_THE_ROEBE_SHELL.md +64 -0
  151. data/doc/ruby_on_rails_tutorial/data_types_for_rails_migrations.md +11 -0
  152. data/doc/ruby_on_rails_tutorial/ruby_on_rails_tutorial.cgi +404 -0
  153. data/doc/sinatra_tutorial/sinatra_tutorial.cgi +7 -0
  154. data/doc/sinatra_tutorial/sinatra_tutorial.rb +930 -0
  155. data/doc/sinatra_tutorial/sinatra_tutorial.sinatra +56 -0
  156. data/doc/statistics/statistics.md +94 -0
  157. data/doc/the_ruby_philosophy/the_ruby_philosophy.md +6 -0
  158. data/doc/todo/todo_for_the_roebe_project.md +1 -0
  159. data/doc/todo/todo_for_the_roebe_project_on_windows.md +4 -0
  160. data/doc/todo/todo_for_the_roebe_shell.md +759 -0
  161. data/examples/README.md +4 -0
  162. data/examples/date_and_time/is_this_day_part_of_that_range.rb +45 -0
  163. data/examples/misc/argv_encoding_test.rb +38 -0
  164. data/examples/misc/arrays/center_two_arrays.rb +24 -0
  165. data/examples/misc/loops/display_coloured_vertical_bars.rb +10 -0
  166. data/examples/rack/README.md +2 -0
  167. data/examples/rack/all_in_one_rack_example.rb +241 -0
  168. data/examples/rack/hello_world_in_rack.rb +37 -0
  169. data/examples/recursion/README.md +2 -0
  170. data/examples/recursion/quadratic_sum_of_a_number.rb +23 -0
  171. data/examples/recursion/reverse_the_string.rb +31 -0
  172. data/examples/recursion/shift_highest_value.rb +30 -0
  173. data/examples/recursion/shuffle_sort_string.rb +35 -0
  174. data/examples/rmagick/001_axes.rb +68 -0
  175. data/examples/rmagick/002_basic_2D_canvas.rb +29 -0
  176. data/examples/rmagick/003_a_walking_duck.rb +42 -0
  177. data/examples/rmagick/004_black_rectangle_with_red_border.rb +37 -0
  178. data/examples/rmagick/A_WALKING_DUCK.gif +0 -0
  179. data/examples/rmagick/foobar.png +0 -0
  180. data/examples/tty_box/all_in_one.rb +33 -0
  181. data/lib/roebe/autoinclude.rb +4 -0
  182. data/lib/roebe/autoinclude_encoding.rb +11 -0
  183. data/lib/roebe/autoinclude_open.rb +3 -0
  184. data/lib/roebe/base/base.rb +25 -0
  185. data/lib/roebe/base/chdir.rb +48 -0
  186. data/lib/roebe/base/colours.rb +600 -0
  187. data/lib/roebe/base/commandline_arguments.rb +96 -0
  188. data/lib/roebe/base/constants.rb +25 -0
  189. data/lib/roebe/base/copy.rb +72 -0
  190. data/lib/roebe/base/editor.rb +18 -0
  191. data/lib/roebe/base/encoding.rb +54 -0
  192. data/lib/roebe/base/env.rb +22 -0
  193. data/lib/roebe/base/esystem.rb +99 -0
  194. data/lib/roebe/base/home_directory_of_user_x.rb +27 -0
  195. data/lib/roebe/base/is_on_roebe.rb +22 -0
  196. data/lib/roebe/base/misc.rb +415 -0
  197. data/lib/roebe/base/next.rb +29 -0
  198. data/lib/roebe/base/opnn.rb +52 -0
  199. data/lib/roebe/base/prototype.rb +483 -0
  200. data/lib/roebe/base/reset.rb +50 -0
  201. data/lib/roebe/base/run.rb +17 -0
  202. data/lib/roebe/base/simp.rb +25 -0
  203. data/lib/roebe/base/support_for_beautiful_url.rb +35 -0
  204. data/lib/roebe/base/symlink.rb +51 -0
  205. data/lib/roebe/base/time.rb +165 -0
  206. data/lib/roebe/base/verbose_truth.rb +21 -0
  207. data/lib/roebe/base/write_what_into.rb +33 -0
  208. data/lib/roebe/browser/README.md +5 -0
  209. data/lib/roebe/browser/browser.rb +26 -0
  210. data/lib/roebe/browser/constants.rb +43 -0
  211. data/lib/roebe/browser/firefox.rb +51 -0
  212. data/lib/roebe/browser/menu.rb +103 -0
  213. data/lib/roebe/browser/misc.rb +367 -0
  214. data/lib/roebe/browser/output_url_then_open_in_browser.rb +168 -0
  215. data/lib/roebe/browser/palemoon.rb +59 -0
  216. data/lib/roebe/browser/reset.rb +50 -0
  217. data/lib/roebe/cat/class.rb +225 -0
  218. data/lib/roebe/cat/method.rb +14 -0
  219. data/lib/roebe/classes/add_irc_quote.rb +132 -0
  220. data/lib/roebe/classes/add_newline_after.rb +124 -0
  221. data/lib/roebe/classes/add_newline_after_n_characters.rb +65 -0
  222. data/lib/roebe/classes/add_this_user_to_the_sudoers_file.rb +67 -0
  223. data/lib/roebe/classes/add_user_lighty.rb +104 -0
  224. data/lib/roebe/classes/aggregate_all_files_together_from_this_directory.rb +86 -0
  225. data/lib/roebe/classes/aliases.rb +683 -0
  226. data/lib/roebe/classes/all_games.rb +61 -0
  227. data/lib/roebe/classes/all_my_gems.rb +101 -0
  228. data/lib/roebe/classes/alphabetical_sorter.rb +117 -0
  229. data/lib/roebe/classes/apache_configuration_maker.rb +234 -0
  230. data/lib/roebe/classes/append_this.rb +156 -0
  231. data/lib/roebe/classes/append_to_line.rb +141 -0
  232. data/lib/roebe/classes/ascii/README.md +2 -0
  233. data/lib/roebe/classes/ascii/fix_missing_numbers_for_ascii_paradise.rb +96 -0
  234. data/lib/roebe/classes/at.rb +340 -0
  235. data/lib/roebe/classes/audio_information/audio_information.rb +116 -0
  236. data/lib/roebe/classes/automounter.rb +181 -0
  237. data/lib/roebe/classes/available_classes.rb +219 -0
  238. data/lib/roebe/classes/backup_core_system.rb +223 -0
  239. data/lib/roebe/classes/basic_configure.rb +110 -0
  240. data/lib/roebe/classes/batch_generate_all_my_gems.rb +132 -0
  241. data/lib/roebe/classes/become_another_user.rb +86 -0
  242. data/lib/roebe/classes/bezirk.rb +91 -0
  243. data/lib/roebe/classes/birthday_notifications.rb +291 -0
  244. data/lib/roebe/classes/books/books.rb +452 -0
  245. data/lib/roebe/classes/books/menu.rb +171 -0
  246. data/lib/roebe/classes/burn_iso/burn_iso.rb +262 -0
  247. data/lib/roebe/classes/burn_iso/constants.rb +43 -0
  248. data/lib/roebe/classes/burn_iso/initialize.rb +33 -0
  249. data/lib/roebe/classes/caesar_cipher.rb +88 -0
  250. data/lib/roebe/classes/calendar.rb +360 -0
  251. data/lib/roebe/classes/calendar_maker.rb +61 -0
  252. data/lib/roebe/classes/celsius_to_fahrenheit.rb +195 -0
  253. data/lib/roebe/classes/check_for_bad_blocks.rb +67 -0
  254. data/lib/roebe/classes/check_yaml.rb +71 -0
  255. data/lib/roebe/classes/chmod_current_time.rb +71 -0
  256. data/lib/roebe/classes/clipboard.rb +221 -0
  257. data/lib/roebe/classes/clock.rb +118 -0
  258. data/lib/roebe/classes/colourize_numbers.rb +70 -0
  259. data/lib/roebe/classes/compare_these_two_directories.rb +101 -0
  260. data/lib/roebe/classes/compare_these_two_files.rb +167 -0
  261. data/lib/roebe/classes/compile_kernel.rb +114 -0
  262. data/lib/roebe/classes/config_generator.rb +204 -0
  263. data/lib/roebe/classes/conky.rb +114 -0
  264. data/lib/roebe/classes/conky_rcfile_generator.rb +61 -0
  265. data/lib/roebe/classes/convert_encoding_of_this_file.rb +215 -0
  266. data/lib/roebe/classes/convert_file_into_utf_encoding.rb +89 -0
  267. data/lib/roebe/classes/convert_this_cgi_file_into_a_sinatrafied_application.rb +145 -0
  268. data/lib/roebe/classes/copy_from_glibc.rb +134 -0
  269. data/lib/roebe/classes/copy_here.rb +76 -0
  270. data/lib/roebe/classes/copy_kernel_config.rb +59 -0
  271. data/lib/roebe/classes/copy_these_directories_to.rb +121 -0
  272. data/lib/roebe/classes/correct_gibberish.rb +89 -0
  273. data/lib/roebe/classes/covid_lethality.rb +243 -0
  274. data/lib/roebe/classes/create_asoundrc_file.rb +66 -0
  275. data/lib/roebe/classes/create_benchmark_file.rb +77 -0
  276. data/lib/roebe/classes/create_desktop_file.rb +236 -0
  277. data/lib/roebe/classes/create_docbook_sgml_dtd_catalog.rb +113 -0
  278. data/lib/roebe/classes/create_file_skeleton/constants.rb +70 -0
  279. data/lib/roebe/classes/create_file_skeleton/create_file_skeleton.rb +470 -0
  280. data/lib/roebe/classes/create_file_skeleton/generate_c_string.rb +31 -0
  281. data/lib/roebe/classes/create_file_skeleton/generate_cpp_string.rb +33 -0
  282. data/lib/roebe/classes/create_file_skeleton/generate_ruby_string.rb +124 -0
  283. data/lib/roebe/classes/create_file_skeleton/reset.rb +56 -0
  284. data/lib/roebe/classes/create_file_skeleton/run.rb +23 -0
  285. data/lib/roebe/classes/create_firefox_extension.rb +178 -0
  286. data/lib/roebe/classes/create_iso.rb +203 -0
  287. data/lib/roebe/classes/create_iso_for_games.rb +308 -0
  288. data/lib/roebe/classes/create_jar_archive.rb +58 -0
  289. data/lib/roebe/classes/create_my_directories.rb +208 -0
  290. data/lib/roebe/classes/create_ruby_directory_layout.rb +117 -0
  291. data/lib/roebe/classes/create_zip.rb +112 -0
  292. data/lib/roebe/classes/css_analyzer.rb +125 -0
  293. data/lib/roebe/classes/current_monitor_resolution.rb +107 -0
  294. data/lib/roebe/classes/custom_table/custom_table.rb +198 -0
  295. data/lib/roebe/classes/cut_after_colon.rb +80 -0
  296. data/lib/roebe/classes/daemonize.rb +131 -0
  297. data/lib/roebe/classes/date_sort.rb +149 -0
  298. data/lib/roebe/classes/day_calendar.rb +153 -0
  299. data/lib/roebe/classes/dbus.rb +127 -0
  300. data/lib/roebe/classes/delete_all_directories.rb +100 -0
  301. data/lib/roebe/classes/delete_empty_directories.rb +96 -0
  302. data/lib/roebe/classes/delete_empty_files.rb +146 -0
  303. data/lib/roebe/classes/dhcpcd.rb +139 -0
  304. data/lib/roebe/classes/differences_between_two_directories.rb +140 -0
  305. data/lib/roebe/classes/disable.rb +172 -0
  306. data/lib/roebe/classes/display_gcc_version.rb +135 -0
  307. data/lib/roebe/classes/do_a_google_search.rb +67 -0
  308. data/lib/roebe/classes/do_install.rb +337 -0
  309. data/lib/roebe/classes/done.rb +158 -0
  310. data/lib/roebe/classes/done_and_open.rb +183 -0
  311. data/lib/roebe/classes/doskey_generator.rb +198 -0
  312. data/lib/roebe/classes/downcase_directories.rb +83 -0
  313. data/lib/roebe/classes/downcase_extension.rb +131 -0
  314. data/lib/roebe/classes/download_from_this_url.rb +266 -0
  315. data/lib/roebe/classes/email.rb +648 -0
  316. data/lib/roebe/classes/enable.rb +60 -0
  317. data/lib/roebe/classes/enable_autologin.rb +371 -0
  318. data/lib/roebe/classes/english_to_german.rb +128 -0
  319. data/lib/roebe/classes/ethernet.rb +171 -0
  320. data/lib/roebe/classes/euclidian_distance.rb +148 -0
  321. data/lib/roebe/classes/extract_documentation.rb +191 -0
  322. data/lib/roebe/classes/extract_gem_file.rb +208 -0
  323. data/lib/roebe/classes/feet_to_centimetres.rb +106 -0
  324. data/lib/roebe/classes/fetch_random_line.rb +66 -0
  325. data/lib/roebe/classes/fetch_url.rb +77 -0
  326. data/lib/roebe/classes/file_parser.rb +126 -0
  327. data/lib/roebe/classes/file_renamer.rb +229 -0
  328. data/lib/roebe/classes/files_that_could_become_apps.rb +91 -0
  329. data/lib/roebe/classes/filter_apache_log.rb +90 -0
  330. data/lib/roebe/classes/find_all_files_encoded_in_iso.rb +95 -0
  331. data/lib/roebe/classes/find_all_files_with_a_question_mark.rb +148 -0
  332. data/lib/roebe/classes/find_duplicate_entries_in_alias_file.rb +160 -0
  333. data/lib/roebe/classes/find_empty_files.rb +80 -0
  334. data/lib/roebe/classes/find_expanded_alias.rb +259 -0
  335. data/lib/roebe/classes/find_out_version_of.rb +186 -0
  336. data/lib/roebe/classes/find_static_libraries.rb +213 -0
  337. data/lib/roebe/classes/fix_mcookie.rb +76 -0
  338. data/lib/roebe/classes/fix_timezone.rb +95 -0
  339. data/lib/roebe/classes/fluxbox/README.md +3 -0
  340. data/lib/roebe/classes/fluxbox/autogenerate_fluxbox_files.rb +20 -0
  341. data/lib/roebe/classes/fluxbox/generate_fluxbox_apps_file.rb +155 -0
  342. data/lib/roebe/classes/fluxbox/generate_fluxbox_keys_file.rb +110 -0
  343. data/lib/roebe/classes/fluxbox/install_fluxbox_style.rb +85 -0
  344. data/lib/roebe/classes/font_installer.rb +139 -0
  345. data/lib/roebe/classes/fotos_f/303/274r_ingrid.rb +50 -0
  346. data/lib/roebe/classes/fragment_maker.rb +141 -0
  347. data/lib/roebe/classes/general_overviewer.rb +258 -0
  348. data/lib/roebe/classes/generate_alsa_conf.rb +133 -0
  349. data/lib/roebe/classes/generate_etc_resolv_conf_file.rb +106 -0
  350. data/lib/roebe/classes/generate_fstab_file/generate_fstab_file.rb +255 -0
  351. data/lib/roebe/classes/generate_gemspec/constants.rb +58 -0
  352. data/lib/roebe/classes/generate_gemspec/generate_gemspec.rb +195 -0
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  2706. data/lib/roebe/www/vnc/vnc.sinatra +56 -0
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  2708. data/lib/roebe/www/voice_recorders/voice_recorders.rb +48 -0
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  2711. data/lib/roebe/www/wahrscheinlichkeit/wahrscheinlichkeit.rb +270 -0
  2712. data/lib/roebe/www/wahrscheinlichkeit/wahrscheinlichkeit.sinatra +56 -0
  2713. data/lib/roebe/www/war_in_Ukraine_2022/war_in_Ukraine_2022.cgi +7 -0
  2714. data/lib/roebe/www/war_in_Ukraine_2022/war_in_Ukraine_2022.rb +155 -0
  2715. data/lib/roebe/www/war_in_Ukraine_2022/war_in_Ukraine_2022.sinatra +56 -0
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  2717. data/lib/roebe/www/waschmaschinen/waschmaschinen.rb +145 -0
  2718. data/lib/roebe/www/waschmaschinen/waschmaschinen.sinatra +52 -0
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  2720. data/lib/roebe/www/webserving/webserving.rb +905 -0
  2721. data/lib/roebe/www/webserving/webserving.sinatra +52 -0
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  2723. data/lib/roebe/www/weechat/weechat.rb +166 -0
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  2727. data/lib/roebe/www/wein/wein.sinatra +56 -0
  2728. data/lib/roebe/www/wget/wgetrc +124 -0
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  2730. data/lib/roebe/www/why_linux/why_linux.rb +301 -0
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  2889. data/test/testing_twentyfour_hours_notation.rb +37 -0
  2890. data/test/testing_zenity.rb +26 -0
  2891. metadata +3023 -0
@@ -0,0 +1,1262 @@
1
+ english('Genetics') {
2
+ autoextend
3
+ default_template '
4
+
5
+ a, a:link { text-decoration: none; color: steelblue; font-weight: bold; }
6
+ a:hover { text-decoration: underline; color: royalblue; font-weight: bold; }
7
+
8
+ p.default {
9
+ margin: 4px;
10
+ margin-left: 1em;
11
+ margin-right: 1em;
12
+ padding: 5px;
13
+ }
14
+
15
+ '
16
+ ruby_favicon
17
+ body_css_class 's12px padt4px marpad2px VERDANAs'
18
+ body_css_style 'background-color: #d3d2d1;'
19
+ font_size '1.2em'
20
+
21
+ # =========================================================================== #
22
+ # === header
23
+ # =========================================================================== #
24
+ def header(
25
+ i = '',
26
+ optional_css_class = ''
27
+ )
28
+ h2 i, optional_css_class
29
+ end
30
+
31
+ doc('s0_8em') {
32
+ dimg2 'science/genetics/DNA_HELIX_UND_RATTE.png',
33
+ 'https://i.imgur.com/tHpLvvL.jpg',
34
+ 'bblack4 mars0_5em'
35
+ br
36
+ # ========================================================================= #
37
+ # === Tabelle der Nukleoside
38
+ # ========================================================================= #
39
+ h2 'Tabelle der Nukleoside'
40
+ br
41
+ table2('mars2em larger BOLD','','',
42
+ 'Basen:','Nukleoside:',
43
+ 'Adenin ←','→ Adenosin',
44
+ 'Guanin ←','→ Guanosin',
45
+ 'Thymin ←','→ Thymidin',
46
+ 'Cytosin ←','→ Cytidin',
47
+ 'Uracil ←','→ Uridin'
48
+ )
49
+ pretty_hsep
50
+ header 'Sigma-Faktoren','mart1px marb10px'
51
+ p_default {
52
+ e 'Sigma 32 bei E.coli erkennt eine andere Sequenz als (Standard)
53
+ Sigma 70. Ich tausche einen Teil der Polymerase aus - und schon
54
+ funktioniert sie komplett anders!'
55
+ }
56
+ pretty_hsep
57
+ # ========================================================================= #
58
+ # === Nomenklatur von Genen
59
+ # ========================================================================= #
60
+ header 'Nomenklatur der Gene'
61
+ div('default martb1px') {
62
+ p('marb1px') {
63
+ e 'Die verschiedenen <b>Namen</b> für Gene entstammen oft der
64
+ Geschichte ihrer Entdeckung - sprich, wann, wie und von welcher
65
+ Person oder von welchen Personen sie entdeckt wurden:'
66
+ br
67
+ lem2 '- Ein Zellbiologie gibt den Namen anhand der zellulären Funktion.'
68
+ br
69
+ lem2 '- Ein Entwicklungsbiologe anhand von Mutanten die defekt sind.'
70
+ }
71
+ }
72
+ # ========================================================================= #
73
+ # === ESTs
74
+ # ========================================================================= #
75
+ h2 'ESTs'
76
+ div_default {
77
+ p {
78
+ e '<b>ESTs</b> (aka <b>expressed sequence tags</b> are short sequences
79
+ derived from messenger RNAs. These can, in turn, be hybridized to
80
+ chromosomal DNA. The advantage of this was that this allowed
81
+ scientists in the 1990s to easily identify open reading frames.'
82
+ }
83
+ }
84
+ # ========================================================================= #
85
+ # === Historische Fakten tag
86
+ # ========================================================================= #
87
+ h2 'Historische und kuriose Fakten'
88
+ div_default {
89
+ p_default {
90
+ e 'Im Jahre <b>1970</b> sequenzierte <b>Ray Wu</b> als erster ein DNA
91
+ Fragment - zwölf Basen am Ende eines Einzelstrangs entstanden aus
92
+ einem durch Enzyme geschnittenen Ring.'
93
+ }
94
+ }
95
+ # ========================================================================= #
96
+ # === DNA Microarrays tag
97
+ # ========================================================================= #
98
+ header 'DNA Microarrays','mart1px'
99
+ div('default ind0 wid95 mart2px','dna_microarrays'){
100
+ e '<b>DNA Microarrays</b> make it possible to create a global profile
101
+ of all expressed RNA within a cell or cell homogenisate.'
102
+ br
103
+ e 'This pattern that will be capture is often very characteristic
104
+ of the given cell or tissue, which in turn allows characterization
105
+ of disease patterns (in theory).'
106
+ br
107
+ dimg 'science/DNA_MICROARRAY.png',
108
+ 'mars3em'
109
+ }
110
+ # ========================================================================= #
111
+ # === MITOCHONDRIUM
112
+ # ========================================================================= #
113
+ div(id: 'mitochondrium'){
114
+ h4 'Mitochondrium'
115
+ dimg 'science/biology/organelles/MITOCHONDRIUM_OVERVIEW.png',
116
+ 'bblack3 marl1em'
117
+ dimg 'science/biology/organelles/TEM_Bild_eines_Mitochondriums.png',
118
+ 'bblack3'
119
+ }
120
+ # ========================================================================= #
121
+ # === Thymidylat-Synthase Tag. dUMP -> dTMP
122
+ # ========================================================================= #
123
+ div_default {
124
+ h2 'Thymidylat-Synthase'
125
+ p {
126
+ e 'dUMP wird durch <b>Thymidylat-Synthase</b> in dTMP umgewandelt,
127
+ indem eine Methylgruppe angeheftet wird.'
128
+ }
129
+ }
130
+ # =========================================================================== #
131
+ # === misc tag tidbits tag
132
+ # =========================================================================== #
133
+ div_default {
134
+ e 'Helikasen wurden im Jahre 1976 durch <b>Hoffman-Berling</b> entdeckt.'
135
+ br
136
+ e 'SSB ist auch insofern wichtig, da es <b>secondary structures</b>
137
+ reduziert.'
138
+ br
139
+ e '<b>RecA</b> wird durch ATP "angeregt", die Affinität zu DNA
140
+ steigt.'
141
+ br
142
+ e 'Die <b>Shine-Dalgarno Sequenz</b> auf der mRNA ist AGG-AGG-U'
143
+ br
144
+ e 'Wo natürlicherweise Kalkstein auftritt, ist der Boden weniger sauer.'
145
+ }
146
+ # ========================================================================= #
147
+ # === Denaturing DNA
148
+ # ========================================================================= #
149
+ header 'Denaturing DNA'
150
+ div('ind0 wid95 mart2px'){
151
+ e 'DNA will become fully denatured at a pH of <b>11.3</b>.'
152
+ }
153
+ # ========================================================================= #
154
+ # === Gene Map Viewer
155
+ # ========================================================================= #
156
+ header 'Gene Map Viewers (Ensembl and others)'
157
+ div('ind0 wid95 mart2px'){
158
+ e 'The Ensemble Gene Map Viewer contains entries for humans,
159
+ chicken, fugu, fruitfly and many other organisms.'
160
+ br
161
+ abr 'https://www.ensembl.org/index.html',
162
+ content: 'Ensembl Gene Map Viewer - Show different Animals '\
163
+ 'and Human Genomes',
164
+ css_class: 'BOLD mars1em'
165
+ br
166
+ e 'The above Ensembl Application has been written in perl.'
167
+ br
168
+ e 'Especially these reviews may be helpful for anyone curious
169
+ to find out more about it:'
170
+ br
171
+ e 'James Stalker et al. The Ensembl Web Site: Mechanics of
172
+ a Genome Browser Genome Res. 2004 14: 951-955.'
173
+ br
174
+ e 'It can be found here:'
175
+ br
176
+ abr 'https://www.genome.org/cgi/content/abstract/14/5/951',
177
+ content: 'Review of the GeneMap Viewer',
178
+ css_class: 'BOLD mars1em'
179
+ abr 'https://www.ensembl.org/Docs/',
180
+ content: 'Good Documents for Ensembl',
181
+ css_class: 'BOLD mars1em'
182
+ }
183
+ # ========================================================================= #
184
+ # === The codon sun
185
+ # ========================================================================= #
186
+ header 'The codon sun'
187
+ div_default {
188
+ dimg2 'science/molecular_biology/THE_CODON_SUN.jpg',
189
+ 'https://i.imgur.com/VvgDNGl.jpg',
190
+ 'mar1em mars3em bblack1'
191
+ }
192
+
193
+ # ========================================================================= #
194
+ # === Die Terminale Transferase
195
+ # ========================================================================= #
196
+ header 'Die Terminale Transferase'
197
+ div_default {
198
+ lembre '<b>Terminale Tranferase</b> katalysiert die Addition von
199
+ Nukleotiden an das <b>3-Strich Ende von DNA</b>.'
200
+ br
201
+ lembre "Interessanterweise arbeitet dieses Enzym an <b>ssDNA</b> und
202
+ benötigt keinen Primer. Es scheint auch Ribonucleotide an die 3'
203
+ Enden von DNA hinzufügen zu können."
204
+ br
205
+ lembre '<b>Cobalt</b> ist ein Kofaktor dieses Enzyms.'
206
+ }
207
+ # ========================================================================= #
208
+ # === Cosuppression tag (ist NICHT Codominance!)
209
+ # ========================================================================= #
210
+ header 'Cosuppression'
211
+ div_default {
212
+ e '<b>Cosuppression</b> ist dann zu beobachten wenn sowohl das
213
+ <b>Transgen</b>, als auch das <b>homologe endogeneous Gene
214
+ gesilenced</b> werden.'
215
+ br
216
+ e 'Der Effekt wird durch <b>dsRNA</b> hervorgerufen.'
217
+ br
218
+ e 'Es wurde zuerst in Pflanzen, dann in Pilzen und auch in Tieren
219
+ beobachtet - vor allem die Cosuppression in Petunias wurde bekannt:'
220
+ br
221
+ dimg 'science/biology/PLANTS/COSUPPRESSION_IN_PETUNIAS.gif',
222
+ 'bblack3 marl2em'
223
+ br
224
+ e 'Picture above: A variegated petunia. Upon injection of the
225
+ gene responsible for purple colouring in petunias, the flowers
226
+ became variegated or white rather than deeper purple as was
227
+ expected.','italic marl2em smaller'
228
+ br
229
+ e 'Cosuppression führt effektiv zur <b>Degradierung von RNA</b>.'
230
+ br
231
+ e 'Dies kann man dann auch "grafting-induced" Cosuppression nennen,
232
+ vor allem in Pflanzen.'
233
+ br
234
+ ee 'Man vermutet das dieser Mechanismus in eukaryotischen Organismen
235
+ dadurch entstand um molekulare Parasiten wie Viren oder Transpososon
236
+ zu "bekämpfen" (Kasschau, K.D. & Carrington, J.C. Cell 95, 461-470 (1998). '
237
+ abr_self 'https://www.ncbi.nlm.nih.gov/pubmed/9827799?dopt=Abstract&holding=npg)'
238
+ br
239
+ e 'Diese Vermutung wird unterstützt von der Tatsache das einige
240
+ Pflanzen RNA-Viren <b>Cosuppression inhibieren</b> können.'
241
+ br
242
+ abr 'https://www.nature.com/ng/journal/v21/n2/full/ng0299_148.html',
243
+ content: 'Cosuppression',
244
+ css_class: 'BOLD mars1em'
245
+ br
246
+ }
247
+ # ========================================================================= #
248
+ # === IMG TAG
249
+ # ========================================================================= #
250
+ div(id: 'codon') {
251
+ dimg 'science/biology/RNA_BASE_CODE.png',
252
+ 'bblack4 mars1em'
253
+ }
254
+ # ========================================================================= #
255
+ # === Methylcytosin und Methyl.
256
+ # ========================================================================= #
257
+ div('mart1em','methylcytosin') {
258
+ p {
259
+ e 'In eukaryotischer DNA liegen methylierte Cytosine immer neben
260
+ Guaninen desselben Stranges. (<b>CpG</b> Inseln, wobei p für
261
+ <b>Phosphodiesterbrücke</b> steht)'
262
+ br
263
+ e 'Häufig kann man in Bakterien methylierte Adenin-Rest finden -
264
+ <b>6-Methylaminopurin</b>.'
265
+ }
266
+ }
267
+ # ========================================================================= #
268
+ # === Meiose tag
269
+ # ========================================================================= #
270
+ header 'Meiose (griechisch: <b>meiono</b> = vermindern)'
271
+ div_default {
272
+ p {
273
+ e 'Die <b>Prophase I</b> der Meiose ist unterteilt in: (LeZyPaDip-Dia)'
274
+ br
275
+ cmd ' Leptotän'
276
+ cmd ' Zygotän'
277
+ cmd ' Pachytän'
278
+ cmd ' Diplotän'
279
+ cmd ' Diakinese'
280
+ }
281
+ }
282
+ # ========================================================================= #
283
+ # === F-Plasmid PHAGE
284
+ # ========================================================================= #
285
+ div(id: 'f_plasmid'){
286
+ h4 'F Plasmid'
287
+ p {
288
+ e 'Das F Plasmid insertiert mittels IS Sequenzen.'
289
+ }
290
+ }
291
+ # ========================================================================= #
292
+ # === CCA adding Enzyme
293
+ # ========================================================================= #
294
+ header 'CCA adding Enzyme'
295
+ div_default {
296
+ p('default') {
297
+ lem 'An dieser Stelle werden einige Fakten zum <b>CCA-adding Enzyme</b>
298
+ erwähnt.'
299
+ br
300
+ lem "Dieses Enzym hängt an 3' Ende von tRNAs die Sequenz <b>CCA</b> an."
301
+ br
302
+ lem 'Interessanterweise will dieses Enzym lieber CCC hinzufügen,
303
+ die Anwesenheit von ATP verhindert dies jedoch, und so wird
304
+ als letzter Schritt ein Adenin hinzugefügt.'
305
+ br
306
+ lem 'ATP scheint auch das weitere Hinzufügen von Cytosin zu verhindern.'
307
+ br
308
+ lem 'Mit anderen Worten - E. coli CCA enzyme ist eigentlich eine
309
+ poly(C) Polymerase, aber dank der Gegenwart von ATP
310
+ wird die Spezifität geändert.'
311
+ br
312
+ lem 'Dies erinnert an die poly(A) polymerase.'
313
+ }
314
+ }
315
+ # ========================================================================= #
316
+ # Chemische Struktur von DNA
317
+ # ========================================================================= #
318
+ header 'Chemische Struktur der DNA'
319
+ div_default {
320
+ dimg :chemische_struktur_dna,
321
+ 'bblack1 marl1em'
322
+ }
323
+ # ========================================================================= #
324
+ # === Wobble Regeln in der Genetik
325
+ # ========================================================================= #
326
+ div_default {
327
+ h2 'Wobble Regeln in der Genetik',
328
+ 'marb2px',
329
+ 'wobble' # rf stdk wobble
330
+ table2('marl2em pad0_5em','','RANDOM_BORDER_2PX',
331
+ "<b>5' end of Anticodon (tRNA)</b>","<b>3' end of Codon (mRNA)</b>",
332
+ 'G','C/U',
333
+ 'A','U',
334
+ 'C','G',
335
+ 'U','A/G',
336
+ 'I','U/C/A'
337
+ )
338
+ }
339
+ # ========================================================================= #
340
+ # === Phenylthiocarbamide tag
341
+ # ========================================================================= #
342
+ div_default {
343
+ h2 'PTC - Phenylthiocarbamide'
344
+ p {
345
+ dimg 'science/chemistry/PHENYLTHIOCARBAMIDE.png'
346
+ br
347
+ e '<b>Phenylthiocarbamide</b> ist eine organische Verbindung, die
348
+ entweder sehr bitter schmeckt, oder überhaupt nicht - je nachdem
349
+ welche Gene der Träger hat. (Die Fähigkeit PTC zu schmecken
350
+ ist ein dominante Eigenschaft des Gens, und der Test auf
351
+ <b>PTC Sensitivity</b> ist einer der häufigsten genetischen
352
+ Tests bei Menschen.)'
353
+ }
354
+ }
355
+ # ========================================================================= #
356
+ # === Hyperchromizität
357
+ # ========================================================================= #
358
+ h4 'Hyperchromizität'
359
+ p {
360
+ e '<b>Einzelsträngige DNA</b> absorbiert Ultraviolettstrahlung anders
361
+ als doppelsträngige DNA. Bei einer Wellenlänge von <b>260nm</b>
362
+ absorbiert ssDNA diese Strahlung 1,4 mal mehr als dsDNA - dies
363
+ ist mit dem Begriff <b>Hyperchromizität</b> gemeint.'
364
+ }
365
+ # ========================================================================= #
366
+ # === andi tag
367
+ # ========================================================================= #
368
+ div_default {
369
+ h2 'ANDi','','andi'
370
+ dimg 'science/biology/ANIMALS/ANDi.jpg',
371
+ 'bblack3'
372
+ e 'Der Affe ANDi - reverser Name, für <i class="BOLD ud">integrated
373
+ DNA</i> wurde 2000 gezeugt.'
374
+ p {
375
+ e 'Im <b>Januar 2000</b> erblickte ANDi in einem Labor der <b>Oregon
376
+ Health Science University</b> das Licht der Welt: Als erster
377
+ transgener Rhesusaffe, der Erbinformationen einer anderen Art
378
+ in seinen Zellen trägt.'
379
+ br
380
+ e 'Das aufwändige Experiment mit hoher Fehlerquote löste
381
+ kontroverse Diskussionen aus.'
382
+ }
383
+ p {
384
+ e 'Leicht war der Weg zu diesem Erfolg nicht: <b>224 Eizellen</b> von
385
+ Rhesus-Affen wurden mit dem Quallen-Gen manipuliert. Nach der künstlichen
386
+ Befruchtung dieser Eizellen entstanden 40 Embryos. Die wurden wiederum in
387
+ 20 Leihmütter eingepflanzt, von denen nur fünf schwanger wurden. Nur
388
+ drei Affenbabys kamen am Ende lebend zur Welt - ANDi und seine
389
+ Spielkameraden. Doch nur ANDi trägt das Leuchtgen in seinem Erbgut.'
390
+ }
391
+ p {
392
+ e '<b>Wie</b> wurde <b>ANDi</b> manipuliert?'
393
+ br
394
+ e 'Die Forscher injizieren <b>nicht-infektiöse Viren</b> in eine unbefruchtete
395
+ Eizelle. Die DNA des Virus ist gleichzeitig Träger des Leuchtgens. Sie
396
+ dringt in die Chromosomen der unbefruchteten Eizelle ein. Dort baut sich
397
+ das fremde Gen in die DNA des Empfängers ein. Das Erbgut der Eizelle
398
+ trägt jetzt das Gen einer Qualle.'
399
+ }
400
+ p {
401
+ e 'Im nächsten Schritt wird das Ei künstlich befruchtet und der Embryo
402
+ einer Leihmutter eingepflanzt. Nach fünfeinhalb Monaten Schwangerschaft
403
+ wird Andi geboren. Unter dem Mikroskop wird sichtbar, dass das
404
+ Experiment geglückt ist:'
405
+ br
406
+ e 'Seine Körperzellen leuchten in fluoreszierendem Grün.','marl1em'
407
+ br
408
+ e 'Das Problem das Gerald Schatten von der Oregon Health University
409
+ hatte war das es keine isolierten Affen ES Zellen gab.'
410
+ br
411
+ e 'Als Alternative musste man einen Retrovirus verwenden, um
412
+ eine Integration der viralen DNA in die DNA der Zelle zu
413
+ ermöglichen.'
414
+ br
415
+ e 'Die Form des Retrovirus war ein "pseudo-typed retrovirus" -
416
+ es kann noch ins Genom integrieren, kann aber keine Krankheit
417
+ mehr auslösen da die meisten anderen Gene entfernt wurden.'
418
+ }
419
+ p {
420
+ e 'By placing a foreign gene (transgene) into a pseudo-typed
421
+ retrovirus and injecting the virus into the ova of an
422
+ organism, the foreign gene is integrated into the eggs&#8217;
423
+ DNA.'
424
+ br
425
+ e 'In vitro fertilization can then be used to produce embryos. Every cell in the resulting
426
+ embryo carries the foreign gene because every cell comes from
427
+ the original fertilized ovum.'
428
+ br
429
+ e 'This is the strategy used by the scientists to insert the GFP gene
430
+ into a rhesus monkey.'
431
+ br
432
+ e 'The problem with this strategy is that there is no control over the site
433
+ of integration of the transgene.'
434
+ e 'Integration into the genome is random, and this can have unwanted side-effects.'
435
+ e 'If the transgene inserts into another gene, the functioning of that gene can
436
+ be altered or completely eliminated which may result in developmental defects.'
437
+ }
438
+ p {
439
+ e 'Ein Hauptproblem dabei ist, das die Integration ins Genom zufällig erfolgen
440
+ kann - und an manchen Stellen im Genom wird diese Information überhaupt
441
+ nicht mehr aufgerufen, und damit auch nicht mehr produziert.'
442
+ }
443
+ p {
444
+ e ' A. W. S. Chan, K. Y. Chong, C. Martinovich, C. Simerly, G. Schatten*,
445
+ "Transgenic Monkeys Produced by Retroviral Gene Transfer into Mature Oocytes"
446
+ Science, Vol. 291, pp. 309-312 (January 12, 2001).'
447
+ br
448
+ a 'https://www.sciencemag.org/cgi/content/abstract/291/5502/309',
449
+ content: 'Abstract',
450
+ css_class: 'BOLD mars1em'
451
+ }
452
+ }
453
+ # ========================================================================= #
454
+ # === pathways tag
455
+ # ========================================================================= #
456
+ h2 'Genetic and Biochemical Pathways'
457
+ div_default {
458
+ p {
459
+ e 'Neurospora Merksatz:'
460
+ br
461
+ e 'Ornithin-Citrullin-Arginin (<b>OCA</b>)',
462
+ 'marl2em'
463
+ }
464
+ }
465
+ # ======================================================================= #
466
+ # === Das Werner Syndrom
467
+ # ======================================================================= #
468
+ header 'Werner Syndrom (WS)'
469
+ div_default {
470
+ e 'Werner Syndrome (WS) is a rare progeroid disorder that gives
471
+ rise to <b class="ud">rapid aging phenotype</b> and increased cancer
472
+ predisposition.'
473
+ br
474
+ e 'WS is caused by mutations to a single gene, WRN, that was
475
+ identified in 1997.'
476
+ br
477
+ e 'WRN encodes for a <b>1432 amino acid protein</b>, WRN, that is
478
+ known to contain both exonuclease and helicase activities.'
479
+ br
480
+ e 'WRN belongs to the <b>RecQ helicase</b> family of genes, the
481
+ first member of which was discovered in E. coli. The family is
482
+ quite ubiquitously spread throughout the three domains of life.'
483
+ br
484
+ e 'A RecQ helicase is present as a single copy in most unicellular
485
+ organisms and multiple copies in higher eukaryotes. Five RecQ
486
+ helicases are present in humans, three of which give rise to
487
+ genetic defects, WS, Bloom syndrome (BS) and Rothmund-Thomson
488
+ syndrome (RTS).'
489
+ br
490
+ e 'However, WRN is unique among RecQ helicases
491
+ in coupling an exonuclease domain coupled to a helicase
492
+ domain, on the same polypeptide.'
493
+ br
494
+ dimg 'science/WERNER_SYNDROME.jpg',
495
+ 'marl1em bblack1'
496
+ }
497
+ # ========================================================================= #
498
+ # === Knowledge versus Genes
499
+ # ========================================================================= #
500
+ h2 'Knowledge versus Genes'
501
+ div_default {
502
+ e 'Knowledges and Genes are propagated in fundamentally
503
+ different ways. Every human being of every generation has
504
+ received genes that were present within the gene pool of
505
+ the previous generation. Knowledge, on the other hand,
506
+ expands and accumulates, allowing every generation to
507
+ possess knowledge that did not exist
508
+ in the previous generation.'
509
+ }
510
+ # ========================================================================= #
511
+ # === Albinism
512
+ # ========================================================================= #
513
+ h2 'Albinimus',
514
+ id: 'albinism'
515
+ div_default {
516
+ p_default {
517
+ e 'Albinism is caused by a defect in one of the enzymes
518
+ required to produce melanin, the pigment that darkens
519
+ our skin, hair and eyes.'
520
+ br
521
+ e 'The normal function of melanin is to protect the DNA of skin
522
+ cells from the damaging effects of ultraviolet radiation (UV)
523
+ (in sunlight).'
524
+ }
525
+ }
526
+ # ========================================================================= #
527
+ # === Pedigree symbols explained
528
+ # ========================================================================= #
529
+ h2 'Pedigree symbols explained'
530
+ div_default {
531
+ dimg 'science/genetics/pedigree_symbols_explained.png',
532
+ 'bblack1 mars3em'
533
+ }
534
+ # ========================================================================= #
535
+ # === Slogans
536
+ # ========================================================================= #
537
+ h2 'Slogans'
538
+ p_default {
539
+ e 'The minor DNA groove is less rich in chemical information
540
+ than is the major DNA groove.'
541
+ br
542
+ e 'Each gene discovery project begins with a hunt for mutants
543
+ affecting the biological process that is the focus of the
544
+ research.'
545
+ br
546
+ e 'In Bakterien kodiert <b>rpoH</b> für den Sigmafaktor 32.'
547
+ br
548
+ e 'Das Trockengewicht einer typischen Prokaryotenzelle
549
+ besteht zu rund 50% aus Kohlenstoff.'
550
+ br
551
+ e 'In Textilien wird oft <b class="FI">Lindan</b> verwendet,
552
+ ein Giftstoff.'
553
+ br
554
+ e '<b>Aldosteron</b> scheint mitzuhelfen, das man im Alter besser hört.'
555
+ br
556
+ e 'DNA is the ultimate molecule.'
557
+ br
558
+ e 'Epigenetic silencing can be inherited from one cell
559
+ generation to the next.'
560
+ br
561
+ e 'Can an organism be conceived of as a mere mosaic of
562
+ traits determined by genes?'
563
+ br
564
+ e 'The genome is the living blueprint of an organism.'
565
+ br
566
+ e 'At around the time when the word genes was defined,
567
+ genes could be regarded as abstract elements in an
568
+ equally abstract space.'
569
+ br
570
+ e 'Conjugation is sex-like fusion.'
571
+ br
572
+ e 'RNA ist reaktiver als DNA, da der Zucker eine zusätzliche
573
+ OH-Gruppe am 2-prime C-Atom enthält.'
574
+ br
575
+ e 'One common grouping of transposable elements is whether
576
+ they have to make use of reverse transcription in order to
577
+ transpose or whether they do not.'
578
+ br
579
+ e 'Die verfügbare Anzahl an tRNAs in einer Zelle mag sich
580
+ auf die Geschwindigkeit der Translation auswirken. Wenn bestimmte
581
+ tRNAs nur selten vorkommen, dann wird das Ribosom bei
582
+ der Translation nicht zügig voranschreiten können.'
583
+ br
584
+ e 'As early as the 1920s, many geneticists ­came to believe
585
+ that genes must be mate­rial particles.'
586
+ br
587
+ e 'Autocatalysis in genetics refers to the capacity of genes
588
+ to initiate synthetic processes that ultimately yield copies
589
+ of the genes themselves in order to propagate the genetic
590
+ material from cell to cell and from generation to generation.'
591
+ br
592
+ e 'The F-plasmid can assume both an autonomous and an
593
+ integrated state.'
594
+ br
595
+ e 'CpG (CG) in eukaryotic DNA acts as an <b>epigenetic
596
+ signal</b>.'
597
+ br
598
+ e 'Genetically identical twings might still be epigenetically different.'
599
+ br
600
+ e 'Centromeres are epigenetically defined.'
601
+ br
602
+ e 'Chromatin structure is able to regulate the expression of genes.'
603
+ br
604
+ e 'Classical genetics was a method to expand biological knowledge.'
605
+ br
606
+ e 'Geneticists make a large proportion of their inferences by
607
+ manipulating the system and observing the effects.'
608
+ br
609
+ e 'Maternal imprinting means that a copy of a gene derived from
610
+ the mother will become inactivated.'
611
+ br
612
+ e 'The highly efficient system of homologous recombination in
613
+ Yeast allows the alteration of any chosen chromosomal
614
+ sequence at will.'
615
+ br
616
+ e '<b>AUGA</b> ist eine besondere Sequenz, da sie sowohl ein
617
+ Startcodon (AUG) als auch ein Stopcodon (UGA) besitzt.'
618
+ br
619
+ e 'The hunt for the molecular basis of heredity began in earnest
620
+ with an experiment by Frederick Griffith, who was wirking with
621
+ a virulent strain of Streptococcus pneumoniae.'
622
+ br
623
+ e 'The Avery–MacLeod–McCarty experiment in 1944 showed that
624
+ the "transforming principle" is in fact DNA.'
625
+ br
626
+ e 'Crossovers können sich gegenseitig inhibieren, das heisst
627
+ das in unmittelbarer Nähe eines Crossovers kein weiteres
628
+ auftritt.'
629
+ br
630
+ e 'All cells are unified by the facts that their genetic
631
+ blueprints are encoded in DNA.'
632
+ br
633
+ e "- Alfred Sturtevant's experiments showed that the phenotypic
634
+ expression of a mutation could be affected by the loca­tion of
635
+ the mutated gene on the chromosome."
636
+ br
637
+ e 'Chromatin loops are a higher level of chromatin structure.'
638
+ br
639
+ e 'RNA folds up by intramolecular base pairing.'
640
+ br
641
+ e 'Die Aufgabe von mTORC1 ist es die Translation von
642
+ Proteinen zu aktivieren.'
643
+ br
644
+ e 'Imprinted genes can often be found to be clustered together,
645
+ aka aggregated as a unit.'
646
+ br
647
+ e 'Plasmids are often important for virulence; for
648
+ instance, <i>Bacillus</i> anthracis has 2 plasmids required
649
+ for is virulence properties.'
650
+ br
651
+ e 'Die Modifikation von Histonen verändert die
652
+ Chromatinfunktion.'
653
+ br
654
+ e 'The diploid character of the eukaryotic cell allows for
655
+ a mutation in one gene to be masked by a second, unmutated
656
+ gene copy.'
657
+ br
658
+ e 'Die Telomerase regeneriert die Telomere.'
659
+ br
660
+ e 'Die SRY-Region kann sich "bewegen", zum Beispiel auf
661
+ das X-Chromosom.'
662
+ br
663
+ e 'Heterochromatin propagates from a nucleation event.'
664
+ br
665
+ e 'Perizentrische Inversionen kann man oft daran
666
+ erkennen, das das Centromer seine Position im
667
+ Chromosom ändert.'
668
+ br
669
+ e 'Die Funktion des Zellkerns ist die Aufbewahrung
670
+ der DNA.'
671
+ br
672
+ e 'HP-1, heterochromatin protein-1, is required in
673
+ some way to generate the higher order chromatin
674
+ structure associated with heterochromatin.'
675
+ br
676
+ e 'DNA Methylation acts as an epigenetic mark.'
677
+ br
678
+ e 'Der Unterschied zwischen dem Menschen- und Schimpansengenom
679
+ liegt hauptsächlich in der chromosomalen Organisation (und
680
+ nicht in der DNA Sequenz)'
681
+ br
682
+ e 'Der Spindel-Checkpoint arretiert die Teilung bis alle
683
+ Chromosomen richtig in der Spindel angeordnet sind.'
684
+ br
685
+ e 'Transposons create mutations and can thusly be considered to
686
+ be one of the raw materials for evolution.'
687
+ br
688
+ e 'The dark-staining bands in polytene chromosomes act as
689
+ useful chromosomal landmarks.'
690
+ br
691
+ e 'In most diploid eukaryotes, sexual reproduction is the
692
+ only natural mechanism for producing new members of the
693
+ species.'
694
+ br
695
+ e 'The total gene content of all organisms inhabiting an
696
+ environment is known as its metagenome.'
697
+ br
698
+ e 'In Eukaryoten ist die Termination der Transkription
699
+ eng gekoppelt mit dem <b>Poly-Adenylierungssignal</b>.'
700
+ br
701
+ e 'Hfq acts as a RNA chaperone.'
702
+ br
703
+ e 'Die Behinderung der Segregation nur eines Chromosoms
704
+ vereitelt die Segregation auch aller anderen Chromosomen.'
705
+ br
706
+ e 'Overlapping genes are coupled, meaning that if you
707
+ manipulate one gene, the other coupled gene might be
708
+ affected by this change as well. Thus, this constitutes
709
+ a design constraint.'
710
+ br
711
+ e 'Eine Gensequenz ohne Promotor bleibt stumm.'
712
+ br
713
+ e 'RNA-Moleküle haben nur eine begrenzte Lebensdauer
714
+ ("half-life") in der Zelle.'
715
+ br
716
+ e 'Exon to Intron comparison revealed that exons happen
717
+ to have a low "signal-to-noise" ratio in the human genome.'
718
+ br
719
+ e 'Exons can be skipped in alternative splicing.'
720
+ br
721
+ e 'Die Verteilung des Spo11 Proteins entlang der Chromosomen
722
+ korreliert mit dem Auftreten meiotischer Doppelstrangbrüche.'
723
+ br
724
+ e 'H2AX becomes phosphorylated at sites of DNA-strand
725
+ breakage.'
726
+ br
727
+ e "- Whereas prokaryotic genes are generally accessible and
728
+ 'on' unless repressed, eukaryotic genes are inaccessible
729
+ and 'off' unless activated."
730
+ br
731
+ e 'Transcription is repressed when the promoter is wound
732
+ up in a nucleosome.'
733
+ br
734
+ e 'Ein "scaffold complex" beschleunigt die Reinitiation
735
+ der DNA-Replikation, die dadurch schneller ablaufen kann.'
736
+ br
737
+ e 'In mammals, X chromosome inactivation begins at the
738
+ XIC (X-Inactivation Center).'
739
+ br
740
+ e 'siRNA ultimately helps protect the integrity of
741
+ genomes.'
742
+ br
743
+ e 'A phosphorylation / dephosphorylation cycle controls
744
+ transription and RNA maturation.'
745
+ br
746
+ e 'Die 30nm DNA-Fiber entsteht in dem der Histon-DNA
747
+ Komplex sich zu zu dieser Faser windet.'
748
+ br
749
+ e 'Chiasmen sind die cytologisch sichtbare Folge
750
+ von Crossovers in Diplotän und Diakinese.'
751
+ br
752
+ e 'Eine Chromodomäne kann methylierte Histone erkennen.'
753
+ br
754
+ e '"Crossing over" durchbricht die chromosomale Kopplung
755
+ von Genen.'
756
+ br
757
+ e 'Jede aktive Polymerase führt zur Entstehung einer
758
+ "<i>transcription bubble</i>".'
759
+ br
760
+ e 'XIC constitutes a genomic locus for non-coding RNAs
761
+ that orchestrate the inactivation of extra X chromosomes
762
+ in mammalian cells.'
763
+ br
764
+ e 'Verschiedene Abschnitte im Chromosom werden zu
765
+ unterschiedlichen Zeiten in der S-Phase repliziert.'
766
+ br
767
+ e 'To maintain the stability of a species, replication
768
+ of the DNA of a given organism must be almost free of
769
+ error.'
770
+ br
771
+ e 'Jedes Bivalent hat mindestens immer ein
772
+ Crossover-Ereignis, so klein dies auch immer sein
773
+ mag. Dies ist unbedingt nötig, da ansonsten homologe
774
+ Chromosomen nicht voneinander segregieren können.'
775
+ br
776
+ e 'Bei Kälte mögen Sekundärstrukturen in der RNA zu stabil
777
+ werden.'
778
+ br
779
+ e 'Pol III Promoters are located downstream from
780
+ the transcription start site.'
781
+ br
782
+ e 'Alternatives Splicing führt zur Diversifizierung des
783
+ Proteoms.'
784
+ br
785
+ e 'In eukaryotes, transcription levels are made finely
786
+ adjustable in a chromatin environment by clustering
787
+ binding sites into enhancers.'
788
+ br
789
+ e 'Epigenetic Mechanisms lead to heritable changes in
790
+ gene functions which are not based on changes in the
791
+ DNA Sequence itself.'
792
+ br
793
+ e '<b>IRES</b> are RNA sequences that function like
794
+ <b>prokaryotic RBS</b>.'
795
+ br
796
+ e 'In contrast with the customary picture of DNA as
797
+ an extended double helix, structural deformation of
798
+ DNA to bend or fold into a more compact form is the
799
+ rule rather than an exception.'
800
+ br
801
+ e 'Wenn sich neu synthetisierte DNA-Moleküle (die
802
+ Chromatiden) nicht auf Tochterkerne aufteilen können
803
+ entstehen polyploide Zellkerne.'
804
+ br
805
+ e 'Eine wahrscheinliche Ursache für die Entstehung
806
+ von Aneuploidien ist die verminderte Cohäsion der
807
+ Schwesterchromatiden.'
808
+ br
809
+ e 'Innerhalb der Chromosomendomänen ("chromosomal
810
+ territories") im Zellkern ist das Chromatin
811
+ <b>nicht</b> zufällig angeordnet.'
812
+ br
813
+ e 'Ein Sigmafaktor steuert die Fähigkeit der RNA
814
+ Polymerase Promoter-DNA von anderer DNA zu
815
+ unterscheiden; man spricht hierbei von
816
+ "Diskriminierung von DNA Elementen".'
817
+ br
818
+ e 'The SWI-SNF complex can <b>reposition nucleosomes</b>
819
+ in a test-tube assay if ATP is provided as an
820
+ energy source.'
821
+ br
822
+ e 'Elongation, Termination of Transcription and RNA
823
+ processing are interconnected to one another.'
824
+ br
825
+ e 'Incorporation of Histone H3.3 serves as an
826
+ epigenetic mark for <b>transcriptionally active
827
+ chromatin</b>.'
828
+ br
829
+ e 'Ligand binding of RNA often produces a change in
830
+ the secondary structure of RNA.'
831
+ br
832
+ e 'DNA functions as <b>a template for biological
833
+ complexity</b>.'
834
+ br
835
+ e 'The ribosome behaves like a small, migrating
836
+ factory.'
837
+ br
838
+ e 'mRNA nonsense mutation may trigger degradation of mRNA.'
839
+ br
840
+ e 'mRNA dient als Template für protein synthesis und
841
+ wird als Ribonucleprotein exportiert.'
842
+ br
843
+ e 'Signaling Pathways are the superhighways of the cell.'
844
+ br
845
+ e 'All tRNAs must conform to the same structure (in 3D).'
846
+ br
847
+ e 'Nucleosomes are inhibitors of transcription because
848
+ DNA is packed very tightly and is not accessible for
849
+ RNA polymerases while condensed.'
850
+ br
851
+ e 'DNA Melting im Zuge der Transkription geschieht am
852
+ -10 Bereich; somit ist die -10 Region wichtiger als die
853
+ -35 Region in Bezug auf die Genexpression.'
854
+ br
855
+ e 'tRNA-Synthetases provide a docking platform for
856
+ aminoacids and their cognate tRNAs.'
857
+ br
858
+ e 'TFIIH controls the ATP-dependent transition of the
859
+ preinitiation complex to the open complex.'
860
+ br
861
+ e 'Sobald mehr als 10 Nukleotide synthetisiert worden
862
+ sind, escaped die Polymerase vom Promoter.'
863
+ br
864
+ e 'Nucleosomes are an invariant component of euchromatic
865
+ and heterochromatin in the interphase nucles and of
866
+ mitotic chromosomes.'
867
+ br
868
+ e 'Heterochromatin can serve as a defense mechanism
869
+ against foreign DNA, by silencing transposons.'
870
+ br
871
+ e 'Point mutations in the promoter and promoter-proximal
872
+ elements hinder transcription of the Beta-globin gene.'
873
+ br
874
+ e 'LCRs und Insulator-Sequenzen können transkribierte
875
+ und nicht-transkribierte Bereiche durch die Bildung von
876
+ "chromatin-hubs" voneinander trennen.'
877
+ br
878
+ e 'Histone N-terminal tails provide a molecular handle
879
+ to manipulate DNA accessibility in chromatin.'
880
+ br
881
+ e 'CTD Phosphorylierung bestimmt bestimmen wann
882
+ Proteine an den Polymerasekomplex binden können im
883
+ Zuge der Transkription.'
884
+ br
885
+ e 'Barrier insulators prevent the spreading of
886
+ heterochromatin by creating a local environment
887
+ unfavourable to heterochromatin formation.'
888
+ br
889
+ e 'Inactivation spreads from heterochromatin
890
+ into the adjacent region for a variable distance.'
891
+ br
892
+ e 'Bei <b>Translokations-Trisomien</b> ist der Grund für
893
+ die Entstehung eines aneuploiden Gameten eine Fusion
894
+ von Chromosomen, gefolgt von einem meiotischen
895
+ Paarungs- und Segregations-Defekt des in der Regel
896
+ kleineren Fusionspartners.'
897
+ br
898
+ e 'A barrier insulator can recruit HATs (Histone
899
+ Acetyltransferases) and, in doing so, ensure that
900
+ the adjacent histones are hyperacetylated.'
901
+ br
902
+ e 'Historically DNA seemed to be far too simple and
903
+ too unspecific to support complex biological functions.'
904
+ br
905
+ e 'The stereochemical fit between A=T and C☰G in
906
+ dsDNA is mediated by hydrogen bonds.'
907
+ br
908
+ e 'Sister chromatids are held together by the multi-subunit
909
+ protein complex called <b>cohesin</b>.'
910
+ br
911
+ e 'Shugoshin protects cohesin from being degraded by
912
+ separase at the centromeric regions.'
913
+ br
914
+ e 'Genetic information is ultimately equivalent to
915
+ biochemical function.'
916
+ br
917
+ e 'Molecular genes are not solely confined to being separate "units"
918
+ of inheritance. More importantly they act as a complex assemblages
919
+ of diverse activating and inhibiting mechanisms, acting in concert
920
+ to transcribe and translate DNA templates of various makeup into
921
+ functional protein products.'
922
+ br
923
+ e 'Genetics proceeds from the realm of DNA and its
924
+ replication, to the realm of its transcription, and
925
+ finally to that of its translation.'
926
+ br
927
+ e 'The molecular gene is not defined by its physical and
928
+ chemical materiality on the level of DNA, but rather by
929
+ the products that result from its activity.'
930
+ br
931
+ e 'The capacity for autocatalysis is inherent not only in
932
+ "ordinary" genes but in other DNA elements as well, thus
933
+ questioning the original (historic) definition of the gene
934
+ concept.'
935
+ br
936
+ e 'In 1956, Arthur Kornberg isolated the first DNA polymerase.'
937
+ br
938
+ e 'Gene technology allowed genetic engineers to modify model
939
+ organism with new characteristics. Bacteria could serve as
940
+ some kind of bioreactor.'
941
+ br
942
+ e 'By virtue of being patented, genes additionally assumed
943
+ the character of commodities.'
944
+ br
945
+ e 'The Human Genome Project (HGP) stressed the
946
+ detrimental, but curable role of genes in disease
947
+ for its promotion.'
948
+ br
949
+ e 'Efforts to automate DNA sequencing began in the
950
+ early 1980s.'
951
+ br
952
+ e 'The promise of medical salvation was very effective
953
+ in convincing politicians to support the Human Genome
954
+ Project.'
955
+ br
956
+ e 'An example for genetic polmorphism is the fact that
957
+ the genomes of different human individuals exhibit
958
+ considerable differences.'
959
+ br
960
+ e 'Some epigenetic factors can be named as an example
961
+ that allows for information to pass from the environment
962
+ to the genome, at the least in some organisms.'
963
+ br
964
+ e 'The pax6 gene product is multifunctional as well as
965
+ redundant, to some extent. The Drosophila genome, for
966
+ instance, contains several isoforms with virtually identical
967
+ effects on eye formation.'
968
+ br
969
+ e 'Not every feature of a genome may carry some function
970
+ that is essential to the survival of the organism.'
971
+ br
972
+ e 'The sequences that are annotated as "genes" represent
973
+ only one set of the components of complex genomic ensembles.
974
+ Thus, what is a gene is not necessarily an intrinsic property
975
+ of the DNA sequence at hand, but subject to interpretation
976
+ and evaluation by the genetic "decipher" system in use, by
977
+ the corresponding cell at hand.'
978
+ br
979
+ e 'In regards to genetic mutations that affect an individual
980
+ human being negatively, we can state that each embryo is
981
+ (indirectly) playing "a game of genomic Russian roulette".'
982
+ br
983
+ e 'Many of these diseases that will afflict children are
984
+ knowable in advance, before a couple even conceives.'
985
+ br
986
+ e 'Most genomic changes outside of protein-coding regions are
987
+ not incompatible with vital (living) functions of a complex
988
+ organism - such as a human being - at hand.'
989
+ br
990
+ e 'Genetics is a form of information science.'
991
+ br
992
+ e 'The old blending theory of inheritance in genetics can be
993
+ roughly summarized as "the belief that inheritance worked like
994
+ the mixing of fluids, such as paints".'
995
+ br
996
+ e 'Genetic defects can create chemical individuality among
997
+ humans.'
998
+ br
999
+ e 'The shorter the generation time, the sooner the experiments
1000
+ can be completed.'
1001
+ br
1002
+ e 'An ethical dilemma in regards to engineering human beings
1003
+ in the future may be that any genetically engineered,
1004
+ homogeneous children will be scrubbed of genomic individuality.'
1005
+ br
1006
+ e 'It would be a great feat of engineering to reduce the
1007
+ burden of genetic disease while preserving the genomic
1008
+ diversity of the human species.'
1009
+ br
1010
+ e 'Genetic variation is any difference between two copies of
1011
+ the same gene or DNA molecule.'
1012
+ br
1013
+ e 'In vitro fertilization (IVF) could be used to eliminate
1014
+ (some) genetic disease, such as via <b>pre-implantation
1015
+ genetic testing</b> (PGT).'
1016
+ br
1017
+ e 'Genomic design in humans, aside from ethical considerations
1018
+ in regards to similar problems faced by eugenics, may considerably
1019
+ reduce the burden of recessive genetic diseases and some forms
1020
+ of dominant genetic disease.'
1021
+ br
1022
+ e 'Fathers contribute four times as many new mutations to their
1023
+ offspring as do mothers.'
1024
+ br
1025
+ e 'Intronic sequences found in DNA are spliced out to produce a
1026
+ mature mRNA.'
1027
+ br
1028
+ e 'Mitochondrial disorders can result from alterations in nuclear
1029
+ or mitochondrial genes.'
1030
+ br
1031
+ e 'Mutants allow a geneticist to <i>zero in on any genetic
1032
+ property</i>.'
1033
+ br
1034
+ e 'Translocation events can disrupt critical and essential genes.'
1035
+ br
1036
+ e "- Biological organisms can be viewed as nature's versatile
1037
+ engines of creation."
1038
+ br
1039
+ e 'In haploids, all alleles are expressed in the phenotype
1040
+ because there is no masking of recessives by dominant alleles
1041
+ on the other homolog.'
1042
+ br
1043
+ e 'In a diploid organism, a sterile recessive mutant can be
1044
+ propagated as a heterozygote.'
1045
+ br
1046
+ e 'Genetics is to turn the inorganic into the organic.'
1047
+ br
1048
+ e 'Alternatives Spleißen vermehrt die Codierungsmöglichkeiten
1049
+ eines Gens.'
1050
+ br
1051
+ e 'Genetics, respectively genomics, is <b>the tale of the
1052
+ genome</b>.'
1053
+ br
1054
+ e 'The story of DNA and RNA replication is that of
1055
+ <b>complementary surfaces</b>.'
1056
+ br
1057
+ e 'Diagnostic breast cancer genetic diagnostics, such as for
1058
+ the BRCA1 and BRCA2 gene, is owned by <b>Myriad Genetics</b>.'
1059
+ br
1060
+ e 'With the expression <b>a gene for a disease</b> we typically
1061
+ refer to a <b>mutation</b> in a gene that would plays a role in
1062
+ a specific disease.'
1063
+ br
1064
+ e 'Some geneticists may say that <b>the genes may load the
1065
+ gun but the environment pulls the trigger</b>.'
1066
+ br
1067
+ e 'Different RNA molecules replicate at differing rates, at the
1068
+ least in a test tube. The logical implication of this is that
1069
+ descendants of the swifter replicators naturally grow more
1070
+ common in a population.'
1071
+ br
1072
+ e 'Genes resemble manuscripts written in a four-letter alphabet.'
1073
+ br
1074
+ e 'Genes built ever more elaborate survival machines to aid
1075
+ their own replication.'
1076
+ br
1077
+ e 'RNA replicating in test tubes shows how the idea of purpose
1078
+ can apply to "mindless molecules".'
1079
+ br
1080
+ e 'Genetik ist die universelle biologische Disziplin.'
1081
+ br
1082
+ e 'DNA is at the center of the mystery of heredity.'
1083
+ br
1084
+ e 'Genetic evolution prefers to refine and extend existing
1085
+ information rather than create genuinely new information.'
1086
+ br
1087
+ e 'Genetic engineering yields the power to shape life.'
1088
+ br
1089
+ e '- Erbliche Eigenschaften legen einen Bereich fest, in dem
1090
+ <b>Variabilität</b> möglich ist.'
1091
+ br
1092
+ e '- Synthesized mRNA is interesting because it represents
1093
+ all active genes of a given cell or tissue. It also forms
1094
+ the basis for the creation of <b>cDNA libraries</b>.'
1095
+ br
1096
+ e '- The <b>telomerase</b> is <b>an unusual type of reverse
1097
+ transcriptase</b>.'
1098
+ br
1099
+ e '- Sequences in regions adjacent to the gene itself
1100
+ are called <b>cis-acting elements</b>.'
1101
+ br
1102
+ e '- Die komplexere Organisation eines Organismus schlägt sich
1103
+ jedoch in einer höheren Anzahl von Proteinen nieder.'
1104
+ br
1105
+ e '- '+squotes('It has not escaped our notice that the specific
1106
+ pairing we have postulated immediately suggests a possible
1107
+ copying mechanism for the genetic material.')
1108
+ br
1109
+ e '- <b>DNA</b> is <b>the master recipe for life</b>.'
1110
+ br
1111
+ e '- The offspring of sexually reproducing multi-cellular
1112
+ organism receive a brand-new book that melds together
1113
+ recipes from both individual parents.'
1114
+ br
1115
+ e '- We all possess genes that influence our lives in significant
1116
+ ways, such as how genes affect our height, weight, hair colour
1117
+ and skin pigmentation.'
1118
+ br
1119
+ e '- Antagnoistic pleiotropy refers to the concept of
1120
+ genes that do beneficial things early and harmful things
1121
+ later.'
1122
+ br
1123
+ e '- Extended survival means that the diseases in
1124
+ the genetic dustbin have the opportunity
1125
+ to be seen or expressed in a greater number of
1126
+ people.'
1127
+ br
1128
+ e '- Every human alive today is the most recent link in an
1129
+ unbroken chain of survivors that extends back not only to
1130
+ the originas of modern humans but to the origins of life
1131
+ on earth.'
1132
+ br
1133
+ e '- Genes play a central role in maintaining the biological
1134
+ integrity of the organism that carries them.'
1135
+ br
1136
+ e 'Natural selection is an imperfect genetic sieve that
1137
+ inevitably allows some harmful genes to leak through to
1138
+ the next generation by hitching a ride with the many genes
1139
+ that have either a neutral or beneficial effect on the
1140
+ survival and reproductive success of the individual.'
1141
+ br
1142
+ e 'Epigenetic modifications are reversible.'
1143
+ br
1144
+ e 'Nucleotides (RNA/DNA) can be called the <b>building blocks
1145
+ of life</b>, even though this is a slightly peculiar wording.'
1146
+ br
1147
+ e '- DNA is the reservoir of genetic information.'
1148
+ br
1149
+ e '- Introns could be called evolutionary relics colonized
1150
+ by "selfish" genetic hobos.'
1151
+ br
1152
+ e '- The nature of genetic information in complex organisms
1153
+ has been misunderstood since the inception of molecular
1154
+ biology, primarily because of the assumption that most
1155
+ genetic information is transacted by proteins.'
1156
+ br
1157
+ e '- Genetics determines cellular and organismal
1158
+ phenotypes.'
1159
+ br
1160
+ e '- Purines and Pyrimidines are remarkably versatile compounds.'
1161
+ br
1162
+ e '"cis"-interacting genes are located on the same chromosome.'
1163
+ br
1164
+ e '- RNA is the computational engine of the cell.'
1165
+ br
1166
+ e '- RNA is the vehicle for transgenerational soft-wired
1167
+ inheritance of experience.'
1168
+ br
1169
+ e '- mRNA is the dynamic template for protein synthesis.'
1170
+ br
1171
+ e '- Mobile genetic elements such as transposons can act
1172
+ as modifiers, suppressors or inhibitors of gene activity.'
1173
+ br
1174
+ e '- In 1961, Spiegelman and Hall showed that RNA-DNA hybrids
1175
+ exist naturally in cells.'
1176
+ br
1177
+ e 'There is a tremendous amount of DNA in the world, simply
1178
+ because there are so many different individual cells.'
1179
+ br
1180
+ e 'The vehicles of genetic information within a cell are
1181
+ the <b>chromosomes</b>.'
1182
+ br
1183
+ e 'Genes, along with environmental factors, determine the
1184
+ expression of traits.'
1185
+ br
1186
+ e 'Humans first applied genetci methods to the domestication
1187
+ of plants and animals between 10.000 and 12.000 years ago.'
1188
+ br
1189
+ e "Genetics provides one of biology's unifying principles
1190
+ because all organisms use genetic systems that have a
1191
+ number of features in common."
1192
+ br
1193
+ e 'Having two alleles is usually beneficial in that
1194
+ if one allele is defective, it could still be tolerated
1195
+ by the organism if the other allele is still functional,
1196
+ and thus able to compensate for the defective allele.'
1197
+ br
1198
+ e 'Barbara McClintock conceptualized the signatures of epigenetic
1199
+ control of gene expression decades before it was formally recognized
1200
+ and studied. She was the true pioneer of the concept of <b>the
1201
+ dynamic genome</b>.'
1202
+ br
1203
+ e 'Alleles are the alternative form of genes.'
1204
+ br
1205
+ e 'Transposition is a specialized and highly flexible
1206
+ form of <b>sequence relocation</b>.'
1207
+ br
1208
+ e 'Transposases are the most abundant and ubiquitous genes
1209
+ in nature.'
1210
+ br
1211
+ e 'Larger genomes contain proportionally more transposable
1212
+ elements than smaller genomes.'
1213
+ br
1214
+ e 'Proponents of junk DNA explicitly discouraged research
1215
+ into the possible roles of non-coding regions of genomes.'
1216
+ br
1217
+ e "McClintock demonstrated that <b>transposon mobilization</b>
1218
+ changes developmental phenotype and responses to the
1219
+ environment."
1220
+ br
1221
+ e 'Many imprinted loci differentially express overlapping
1222
+ sense and antisense transcripts.'
1223
+ br
1224
+ e 'Genetic fluidity often refers to <b>jumping genes</b> (mobile
1225
+ genetic elements).'
1226
+ br
1227
+ e '<b>Streptococcal virulence factors</b> are controlled by
1228
+ <b>regulatory RNAs</b>.'
1229
+ br
1230
+ e 'Monozygotic twins are essentially phenocopies.'
1231
+ br
1232
+ e 'X-rays greatly increase mutation rates in all organisms.'
1233
+ br
1234
+ e 'DNA can be viewed as a storage polymer for phosphate.'
1235
+ } # End of slogans tag
1236
+ # ========================================================================= #
1237
+ # === Links
1238
+ # ========================================================================= #
1239
+ h2 'Links (remote)',
1240
+ 'mart1px'
1241
+ dot104 = dot104?
1242
+ p('mars1em') {
1243
+ abr 'https://www.onmeda.de/krankheiten/krankheiten_az.html',
1244
+ content: dot104+'Verschiedene Krankheiten (auf onmeda.de)',
1245
+ css_class: 'slateblue'
1246
+ abr 'https://www.embl.org/sites/heidelberg/',
1247
+ content: dot104+'EMBL in Heidelberg',
1248
+ css_class: 'slateblue'
1249
+ }
1250
+ # ========================================================================= #
1251
+ # === Local Links tag
1252
+ # ========================================================================= #
1253
+ h2 sg(:square_yellow, 'bblack1 marr4px')+
1254
+ 'Local Links',
1255
+ 'martb2px'
1256
+ div('default martb1px') {
1257
+ p('ind0px marl2em mart1px padt1px') {
1258
+ # abr_self :local_science
1259
+ science_links(:local_transcription)
1260
+ }
1261
+ }
1262
+ }}