ro-crate 0.4.0

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Files changed (1179) hide show
  1. checksums.yaml +7 -0
  2. data/.github/workflows/docs.yml +25 -0
  3. data/.github/workflows/tests.yml +16 -0
  4. data/.gitignore +50 -0
  5. data/.ruby-version +1 -0
  6. data/Gemfile +3 -0
  7. data/Gemfile.lock +48 -0
  8. data/LICENSE +21 -0
  9. data/README.md +79 -0
  10. data/Rakefile +30 -0
  11. data/lib/ro_crate/json_ld_hash.rb +41 -0
  12. data/lib/ro_crate/model/contact_point.rb +13 -0
  13. data/lib/ro_crate/model/contextual_entity.rb +41 -0
  14. data/lib/ro_crate/model/crate.rb +211 -0
  15. data/lib/ro_crate/model/data_entity.rb +42 -0
  16. data/lib/ro_crate/model/directory.rb +60 -0
  17. data/lib/ro_crate/model/entity.rb +216 -0
  18. data/lib/ro_crate/model/entry.rb +57 -0
  19. data/lib/ro_crate/model/file.rb +76 -0
  20. data/lib/ro_crate/model/metadata.rb +38 -0
  21. data/lib/ro_crate/model/organization.rb +13 -0
  22. data/lib/ro_crate/model/person.rb +13 -0
  23. data/lib/ro_crate/model/preview.rb +43 -0
  24. data/lib/ro_crate/model/remote_entry.rb +46 -0
  25. data/lib/ro_crate/reader.rb +213 -0
  26. data/lib/ro_crate/ro-crate-preview.html.erb +55 -0
  27. data/lib/ro_crate/writer.rb +48 -0
  28. data/lib/ro_crate_ruby.rb +24 -0
  29. data/ro_crate.gemspec +18 -0
  30. data/test/crate_test.rb +201 -0
  31. data/test/directory_test.rb +45 -0
  32. data/test/entity_test.rb +73 -0
  33. data/test/fixtures/crate-spec1.1/file with spaces.txt +1 -0
  34. data/test/fixtures/crate-spec1.1/ro-crate-metadata.json +35 -0
  35. data/test/fixtures/data.csv +2 -0
  36. data/test/fixtures/directory.zip +0 -0
  37. data/test/fixtures/directory/data/binary.jpg +0 -0
  38. data/test/fixtures/directory/data/info.txt +1 -0
  39. data/test/fixtures/directory/data/nested.txt +1 -0
  40. data/test/fixtures/directory/info.txt +1 -0
  41. data/test/fixtures/directory/root.txt +1 -0
  42. data/test/fixtures/directory_crate/fish/data/binary.jpg +0 -0
  43. data/test/fixtures/directory_crate/fish/data/info.txt +1 -0
  44. data/test/fixtures/directory_crate/fish/data/nested.txt +1 -0
  45. data/test/fixtures/directory_crate/fish/info.txt +1 -0
  46. data/test/fixtures/directory_crate/fish/root.txt +1 -0
  47. data/test/fixtures/directory_crate/ro-crate-metadata.jsonld +25 -0
  48. data/test/fixtures/file with spaces.txt +1 -0
  49. data/test/fixtures/info.txt +1 -0
  50. data/test/fixtures/spaces/file with spaces.txt +1 -0
  51. data/test/fixtures/spaces/ro-crate-metadata.jsonld +25 -0
  52. data/test/fixtures/workflow-0.2.0.zip +0 -0
  53. data/test/fixtures/workflow-0.2.0/Dockerfile +1 -0
  54. data/test/fixtures/workflow-0.2.0/README.md +36 -0
  55. data/test/fixtures/workflow-0.2.0/ro-crate-metadata.jsonld +282 -0
  56. data/test/fixtures/workflow-0.2.0/test/test.sh +41 -0
  57. data/test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl +94 -0
  58. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Aggregate (#936)/Column Filter (#882)/settings.xml +82 -0
  59. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Aggregate (#936)/GroupBy (#880)/settings.xml +129 -0
  60. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Aggregate (#936)/GroupBy (#884)/settings.xml +129 -0
  61. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Aggregate (#936)/Ungroup (#878)/settings.xml +90 -0
  62. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Aggregate (#936)/Ungroup (#883)/settings.xml +90 -0
  63. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Aggregate (#936)/workflow.knime +201 -0
  64. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Aggregate (#940)/Column Filter (#882)/settings.xml +82 -0
  65. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Aggregate (#940)/GroupBy (#880)/settings.xml +129 -0
  66. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Aggregate (#940)/GroupBy (#884)/settings.xml +129 -0
  67. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Aggregate (#940)/Ungroup (#878)/settings.xml +90 -0
  68. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Aggregate (#940)/Ungroup (#883)/settings.xml +90 -0
  69. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Aggregate (#940)/workflow.knime +201 -0
  70. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Cell Replacer (#933)/settings.xml +86 -0
  71. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Column Filter (#925)/settings.xml +82 -0
  72. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Column Filter (#928)/settings.xml +80 -0
  73. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Column Filter (#929)/settings.xml +87 -0
  74. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Column Filter (#950)/settings.xml +82 -0
  75. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Column Rename (#884)/settings.xml +57 -0
  76. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Column Rename (#892)/settings.xml +57 -0
  77. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Column Rename (#926)/settings.xml +62 -0
  78. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Column Rename (#941)/settings.xml +57 -0
  79. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Column Rename (#949)/settings.xml +62 -0
  80. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Column Rename (#952)/settings.xml +57 -0
  81. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Column Resorter (#939)/settings.xml +67 -0
  82. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Column Resorter (#946)/settings.xml +67 -0
  83. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Create Collection Column (#935)/settings.xml +102 -0
  84. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Joiner (#886)/settings.xml +85 -0
  85. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Joiner (#919)/settings.xml +88 -0
  86. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Joiner (#921)/settings.xml +93 -0
  87. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Joiner (#923)/settings.xml +91 -0
  88. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Joiner (#948)/settings.xml +88 -0
  89. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Joiner (#951)/settings.xml +88 -0
  90. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Missing Value (#932)/settings.xml +94 -0
  91. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Reaction SMI (#877)/Column Combiner (#874)/settings.xml +83 -0
  92. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Reaction SMI (#877)/Column Filter (#875)/settings.xml +79 -0
  93. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Reaction SMI (#877)/Column Filter (#876)/settings.xml +80 -0
  94. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Reaction SMI (#877)/workflow.knime +157 -0
  95. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Table Creator (#934)/settings.xml +92 -0
  96. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Ungroup (#924)/settings.xml +90 -0
  97. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/Ungroup (#947)/settings.xml +90 -0
  98. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/WrappedNode Input (#920)/settings.xml +118 -0
  99. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/WrappedNode Output (#917)/settings.xml +77 -0
  100. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/settings.xml +63 -0
  101. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/BUILD (#936)/workflow.knime +764 -0
  102. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Chunk Loop Start (#780)/settings.xml +90 -0
  103. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/Empty Table Creator (#68)/settings.xml +71 -0
  104. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/Generic Loop Start (#55)/settings.xml +68 -0
  105. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/How many rea (#72)/Column Rename (#72)/settings.xml +57 -0
  106. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/How many rea (#72)/Database Connection Table Reader (#53)/settings.xml +55 -0
  107. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/How many rea (#72)/Database Table Selector (#71)/settings.xml +66 -0
  108. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/How many rea (#72)/workflow.knime +183 -0
  109. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/How many rea (#75)/Column Rename (#70)/settings.xml +57 -0
  110. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/How many rea (#75)/Database Connection Table Reader (#52)/settings.xml +55 -0
  111. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/How many rea (#75)/Database Table Selector (#67)/settings.xml +66 -0
  112. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/How many rea (#75)/workflow.knime +170 -0
  113. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/Stop loop_ (#81)/Joiner (#78)/settings.xml +69 -0
  114. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/Stop loop_ (#81)/Rule Engine Variable (#79)/settings.xml +61 -0
  115. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/Stop loop_ (#81)/Table Row to Variable (#80)/settings.xml +93 -0
  116. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/Stop loop_ (#81)/workflow.knime +170 -0
  117. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/Update firea (#73)/Database SQL Executor (#39)/settings.xml +51 -0
  118. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/Update firea (#73)/workflow.knime +126 -0
  119. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/Update reach (#74)/Database SQL Executor (#66)/settings.xml +51 -0
  120. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/Update reach (#74)/workflow.knime +126 -0
  121. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/Variable Condition Loop End (#56)/settings.xml +61 -0
  122. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Compute over (#72)/workflow.knime +369 -0
  123. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/All involved (#777)/Concatenate (#744)/settings.xml +55 -0
  124. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/All involved (#777)/GroupBy (#745)/settings.xml +130 -0
  125. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/All involved (#777)/workflow.knime +148 -0
  126. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Column Filter (#723)/settings.xml +80 -0
  127. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Column Filter (#779)/settings.xml +81 -0
  128. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Column Filter (#780)/settings.xml +80 -0
  129. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/GroupBy (#771)/settings.xml +165 -0
  130. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Parse reacti (#773)/Column Filter (#713)/settings.xml +80 -0
  131. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Parse reacti (#773)/Column Filter (#714)/settings.xml +80 -0
  132. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Parse reacti (#773)/Column Rename (#715)/settings.xml +62 -0
  133. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Parse reacti (#773)/Column Rename (#733)/settings.xml +57 -0
  134. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Parse reacti (#773)/Column Rename (#734)/settings.xml +57 -0
  135. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Parse reacti (#773)/Ungroup (#758)/settings.xml +90 -0
  136. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Parse reacti (#773)/Ungroup (#759)/settings.xml +90 -0
  137. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Parse reacti (#773)/workflow.knime +258 -0
  138. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Prepare Comp (#778)/Column Rename (#761)/settings.xml +62 -0
  139. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Prepare Comp (#778)/Constant Value Column (#743)/settings.xml +55 -0
  140. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Prepare Comp (#778)/Constant Value Column (#762)/settings.xml +55 -0
  141. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Prepare Comp (#778)/Constant Value Column (#763)/settings.xml +55 -0
  142. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Prepare Comp (#778)/workflow.knime +179 -0
  143. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Prepare HasL (#776)/Column Filter (#757)/settings.xml +78 -0
  144. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Prepare HasL (#776)/Column Rename (#759)/settings.xml +62 -0
  145. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Prepare HasL (#776)/workflow.knime +135 -0
  146. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Prepare HasR (#775)/Column Filter (#757)/settings.xml +78 -0
  147. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Prepare HasR (#775)/Column Rename (#733)/settings.xml +62 -0
  148. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Prepare HasR (#775)/workflow.knime +135 -0
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  150. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Prepare Reac (#772)/Constant Value Column (#724)/settings.xml +55 -0
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  153. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Data pre_pro (#828)/Prepare Reac (#781)/Ungroup (#726)/settings.xml +90 -0
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  170. data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Compute scop (#1080)/Compute over (#1055)/Prepare Sink (#754)/GroupBy (#745)/settings.xml +129 -0
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+ <config key="internal_node_subsettings">
6
+ <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
7
+ </config>
8
+ <config key="model">
9
+ <config key="removeCollectionCol_Internals">
10
+ <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
11
+ <entry key="EnabledStatus" type="xboolean" value="true"/>
12
+ </config>
13
+ <entry key="removeCollectionCol" type="xboolean" value="true"/>
14
+ <config key="skipMissingValues_Internals">
15
+ <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
16
+ <entry key="EnabledStatus" type="xboolean" value="true"/>
17
+ </config>
18
+ <entry key="skipMissingValues" type="xboolean" value="false"/>
19
+ <config key="enableHilite_Internals">
20
+ <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
21
+ <entry key="EnabledStatus" type="xboolean" value="true"/>
22
+ </config>
23
+ <entry key="enableHilite" type="xboolean" value="false"/>
24
+ <config key="columnNames_Internals">
25
+ <entry key="SettingsModelID" type="xstring" value="SMID_columnfilter"/>
26
+ <entry key="EnabledStatus" type="xboolean" value="true"/>
27
+ </config>
28
+ <config key="columnNames">
29
+ <entry key="filter-type" type="xstring" value="STANDARD"/>
30
+ <config key="included_names">
31
+ <entry key="array-size" type="xint" value="1"/>
32
+ <entry key="0" type="xstring" value="Transformation ID"/>
33
+ </config>
34
+ <config key="excluded_names">
35
+ <entry key="array-size" type="xint" value="0"/>
36
+ </config>
37
+ <entry key="enforce_option" type="xstring" value="EnforceInclusion"/>
38
+ <config key="name_pattern">
39
+ <entry key="pattern" type="xstring" value=""/>
40
+ <entry key="type" type="xstring" value="Wildcard"/>
41
+ <entry key="caseSensitive" type="xboolean" value="true"/>
42
+ </config>
43
+ <config key="datatype">
44
+ <config key="typelist">
45
+ <entry key="org.knime.core.data.collection.ListDataValue" type="xboolean" value="false"/>
46
+ </config>
47
+ </config>
48
+ </config>
49
+ </config>
50
+ <config key="nodeAnnotation">
51
+ <entry key="text" type="xstring" value="TRS ID"/>
52
+ <entry key="bgcolor" type="xint" value="16777215"/>
53
+ <entry key="x-coordinate" type="xint" value="233"/>
54
+ <entry key="y-coordinate" type="xint" value="179"/>
55
+ <entry key="width" type="xint" value="134"/>
56
+ <entry key="height" type="xint" value="19"/>
57
+ <entry key="alignment" type="xstring" value="CENTER"/>
58
+ <entry key="borderSize" type="xint" value="0"/>
59
+ <entry key="borderColor" type="xint" value="16777215"/>
60
+ <entry key="defFontSize" type="xint" value="11"/>
61
+ <entry key="annotation-version" type="xint" value="20151123"/>
62
+ <config key="styles"/>
63
+ </config>
64
+ <entry key="customDescription" type="xstring" isnull="true" value=""/>
65
+ <entry key="state" type="xstring" value="IDLE"/>
66
+ <entry key="factory" type="xstring" value="org.knime.base.node.preproc.ungroup.UngroupNodeFactory"/>
67
+ <entry key="node-name" type="xstring" value="Ungroup"/>
68
+ <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
69
+ <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
70
+ <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
71
+ <entry key="node-bundle-version" type="xstring" value="3.6.1.v201808311359"/>
72
+ <entry key="node-feature-name" type="xstring" value="KNIME Core"/>
73
+ <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
74
+ <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
75
+ <entry key="node-feature-version" type="xstring" value="3.6.1.v201809030900"/>
76
+ <config key="factory_settings"/>
77
+ <entry key="name" type="xstring" value="Ungroup"/>
78
+ <entry key="hasContent" type="xboolean" value="false"/>
79
+ <entry key="isInactive" type="xboolean" value="false"/>
80
+ <config key="ports">
81
+ <config key="port_1">
82
+ <entry key="index" type="xint" value="1"/>
83
+ <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
84
+ </config>
85
+ </config>
86
+ <config key="filestores">
87
+ <entry key="file_store_location" type="xstring" isnull="true" value=""/>
88
+ <entry key="file_store_id" type="xstring" isnull="true" value=""/>
89
+ </config>
90
+ </config>
@@ -0,0 +1,90 @@
1
+ <?xml version="1.0" encoding="UTF-8"?>
2
+ <config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
3
+ <entry key="node_file" type="xstring" value="settings.xml"/>
4
+ <config key="flow_stack"/>
5
+ <config key="internal_node_subsettings">
6
+ <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
7
+ </config>
8
+ <config key="model">
9
+ <config key="removeCollectionCol_Internals">
10
+ <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
11
+ <entry key="EnabledStatus" type="xboolean" value="true"/>
12
+ </config>
13
+ <entry key="removeCollectionCol" type="xboolean" value="true"/>
14
+ <config key="skipMissingValues_Internals">
15
+ <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
16
+ <entry key="EnabledStatus" type="xboolean" value="true"/>
17
+ </config>
18
+ <entry key="skipMissingValues" type="xboolean" value="false"/>
19
+ <config key="enableHilite_Internals">
20
+ <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
21
+ <entry key="EnabledStatus" type="xboolean" value="true"/>
22
+ </config>
23
+ <entry key="enableHilite" type="xboolean" value="false"/>
24
+ <config key="columnNames_Internals">
25
+ <entry key="SettingsModelID" type="xstring" value="SMID_columnfilter"/>
26
+ <entry key="EnabledStatus" type="xboolean" value="true"/>
27
+ </config>
28
+ <config key="columnNames">
29
+ <entry key="filter-type" type="xstring" value="STANDARD"/>
30
+ <config key="included_names">
31
+ <entry key="array-size" type="xint" value="1"/>
32
+ <entry key="0" type="xstring" value="SMILES"/>
33
+ </config>
34
+ <config key="excluded_names">
35
+ <entry key="array-size" type="xint" value="0"/>
36
+ </config>
37
+ <entry key="enforce_option" type="xstring" value="EnforceInclusion"/>
38
+ <config key="name_pattern">
39
+ <entry key="pattern" type="xstring" value=""/>
40
+ <entry key="type" type="xstring" value="Wildcard"/>
41
+ <entry key="caseSensitive" type="xboolean" value="true"/>
42
+ </config>
43
+ <config key="datatype">
44
+ <config key="typelist">
45
+ <entry key="org.knime.core.data.collection.ListDataValue" type="xboolean" value="false"/>
46
+ </config>
47
+ </config>
48
+ </config>
49
+ </config>
50
+ <config key="nodeAnnotation">
51
+ <entry key="text" type="xstring" value="SMILES"/>
52
+ <entry key="bgcolor" type="xint" value="16777215"/>
53
+ <entry key="x-coordinate" type="xint" value="473"/>
54
+ <entry key="y-coordinate" type="xint" value="179"/>
55
+ <entry key="width" type="xint" value="134"/>
56
+ <entry key="height" type="xint" value="19"/>
57
+ <entry key="alignment" type="xstring" value="CENTER"/>
58
+ <entry key="borderSize" type="xint" value="0"/>
59
+ <entry key="borderColor" type="xint" value="16777215"/>
60
+ <entry key="defFontSize" type="xint" value="11"/>
61
+ <entry key="annotation-version" type="xint" value="20151123"/>
62
+ <config key="styles"/>
63
+ </config>
64
+ <entry key="customDescription" type="xstring" isnull="true" value=""/>
65
+ <entry key="state" type="xstring" value="IDLE"/>
66
+ <entry key="factory" type="xstring" value="org.knime.base.node.preproc.ungroup.UngroupNodeFactory"/>
67
+ <entry key="node-name" type="xstring" value="Ungroup"/>
68
+ <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
69
+ <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
70
+ <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
71
+ <entry key="node-bundle-version" type="xstring" value="3.6.1.v201808311359"/>
72
+ <entry key="node-feature-name" type="xstring" value="KNIME Core"/>
73
+ <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
74
+ <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
75
+ <entry key="node-feature-version" type="xstring" value="3.6.1.v201809030900"/>
76
+ <config key="factory_settings"/>
77
+ <entry key="name" type="xstring" value="Ungroup"/>
78
+ <entry key="hasContent" type="xboolean" value="false"/>
79
+ <entry key="isInactive" type="xboolean" value="false"/>
80
+ <config key="ports">
81
+ <config key="port_1">
82
+ <entry key="index" type="xint" value="1"/>
83
+ <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
84
+ </config>
85
+ </config>
86
+ <config key="filestores">
87
+ <entry key="file_store_location" type="xstring" isnull="true" value=""/>
88
+ <entry key="file_store_id" type="xstring" isnull="true" value=""/>
89
+ </config>
90
+ </config>
@@ -0,0 +1,201 @@
1
+ <?xml version="1.0" encoding="UTF-8"?>
2
+ <config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="workflow.knime">
3
+ <entry key="created_by" type="xstring" value="3.6.1.v201809030900"/>
4
+ <entry key="created_by_nightly" type="xboolean" value="false"/>
5
+ <entry key="version" type="xstring" value="3.6.0Pre"/>
6
+ <entry key="name" type="xstring" value="Aggregate"/>
7
+ <config key="authorInformation">
8
+ <entry key="authored-by" type="xstring" value="&lt;unknown&gt;"/>
9
+ <entry key="authored-when" type="xstring" value="1970-01-01 01:00:00 +0100"/>
10
+ <entry key="lastEdited-by" type="xstring" isnull="true" value=""/>
11
+ <entry key="lastEdited-when" type="xstring" isnull="true" value=""/>
12
+ </config>
13
+ <config key="nodeAnnotation">
14
+ <entry key="text" type="xstring" value=""/>
15
+ <entry key="bgcolor" type="xint" value="16777215"/>
16
+ <entry key="x-coordinate" type="xint" value="113"/>
17
+ <entry key="y-coordinate" type="xint" value="166"/>
18
+ <entry key="width" type="xint" value="134"/>
19
+ <entry key="height" type="xint" value="19"/>
20
+ <entry key="alignment" type="xstring" value="CENTER"/>
21
+ <entry key="borderSize" type="xint" value="0"/>
22
+ <entry key="borderColor" type="xint" value="16777215"/>
23
+ <entry key="defFontSize" type="xint" value="11"/>
24
+ <entry key="annotation-version" type="xint" value="20151123"/>
25
+ <config key="styles"/>
26
+ </config>
27
+ <entry key="customDescription" type="xstring" isnull="true" value=""/>
28
+ <entry key="state" type="xstring" value="IDLE"/>
29
+ <config key="workflow_credentials"/>
30
+ <config key="nodes">
31
+ <config key="node_878">
32
+ <entry key="id" type="xint" value="878"/>
33
+ <entry key="node_settings_file" type="xstring" value="Ungroup (#878)/settings.xml"/>
34
+ <entry key="node_is_meta" type="xboolean" value="false"/>
35
+ <entry key="node_type" type="xstring" value="NativeNode"/>
36
+ <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
37
+ <config key="ui_settings">
38
+ <config key="extrainfo.node.bounds">
39
+ <entry key="array-size" type="xint" value="4"/>
40
+ <entry key="0" type="xint" value="284"/>
41
+ <entry key="1" type="xint" value="117"/>
42
+ <entry key="2" type="xint" value="68"/>
43
+ <entry key="3" type="xint" value="83"/>
44
+ </config>
45
+ </config>
46
+ </config>
47
+ <config key="node_880">
48
+ <entry key="id" type="xint" value="880"/>
49
+ <entry key="node_settings_file" type="xstring" value="GroupBy (#880)/settings.xml"/>
50
+ <entry key="node_is_meta" type="xboolean" value="false"/>
51
+ <entry key="node_type" type="xstring" value="NativeNode"/>
52
+ <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
53
+ <config key="ui_settings">
54
+ <config key="extrainfo.node.bounds">
55
+ <entry key="array-size" type="xint" value="4"/>
56
+ <entry key="0" type="xint" value="404"/>
57
+ <entry key="1" type="xint" value="117"/>
58
+ <entry key="2" type="xint" value="69"/>
59
+ <entry key="3" type="xint" value="83"/>
60
+ </config>
61
+ </config>
62
+ </config>
63
+ <config key="node_882">
64
+ <entry key="id" type="xint" value="882"/>
65
+ <entry key="node_settings_file" type="xstring" value="Column Filter (#882)/settings.xml"/>
66
+ <entry key="node_is_meta" type="xboolean" value="false"/>
67
+ <entry key="node_type" type="xstring" value="NativeNode"/>
68
+ <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
69
+ <config key="ui_settings">
70
+ <config key="extrainfo.node.bounds">
71
+ <entry key="array-size" type="xint" value="4"/>
72
+ <entry key="0" type="xint" value="164"/>
73
+ <entry key="1" type="xint" value="117"/>
74
+ <entry key="2" type="xint" value="104"/>
75
+ <entry key="3" type="xint" value="83"/>
76
+ </config>
77
+ </config>
78
+ </config>
79
+ <config key="node_883">
80
+ <entry key="id" type="xint" value="883"/>
81
+ <entry key="node_settings_file" type="xstring" value="Ungroup (#883)/settings.xml"/>
82
+ <entry key="node_is_meta" type="xboolean" value="false"/>
83
+ <entry key="node_type" type="xstring" value="NativeNode"/>
84
+ <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
85
+ <config key="ui_settings">
86
+ <config key="extrainfo.node.bounds">
87
+ <entry key="array-size" type="xint" value="4"/>
88
+ <entry key="0" type="xint" value="524"/>
89
+ <entry key="1" type="xint" value="117"/>
90
+ <entry key="2" type="xint" value="68"/>
91
+ <entry key="3" type="xint" value="83"/>
92
+ </config>
93
+ </config>
94
+ </config>
95
+ <config key="node_884">
96
+ <entry key="id" type="xint" value="884"/>
97
+ <entry key="node_settings_file" type="xstring" value="GroupBy (#884)/settings.xml"/>
98
+ <entry key="node_is_meta" type="xboolean" value="false"/>
99
+ <entry key="node_type" type="xstring" value="NativeNode"/>
100
+ <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
101
+ <config key="ui_settings">
102
+ <config key="extrainfo.node.bounds">
103
+ <entry key="array-size" type="xint" value="4"/>
104
+ <entry key="0" type="xint" value="644"/>
105
+ <entry key="1" type="xint" value="117"/>
106
+ <entry key="2" type="xint" value="69"/>
107
+ <entry key="3" type="xint" value="83"/>
108
+ </config>
109
+ </config>
110
+ </config>
111
+ </config>
112
+ <config key="connections">
113
+ <config key="connection_0">
114
+ <entry key="sourceID" type="xint" value="-1"/>
115
+ <entry key="destID" type="xint" value="882"/>
116
+ <entry key="sourcePort" type="xint" value="0"/>
117
+ <entry key="destPort" type="xint" value="1"/>
118
+ </config>
119
+ <config key="connection_1">
120
+ <entry key="sourceID" type="xint" value="878"/>
121
+ <entry key="destID" type="xint" value="880"/>
122
+ <entry key="sourcePort" type="xint" value="1"/>
123
+ <entry key="destPort" type="xint" value="1"/>
124
+ </config>
125
+ <config key="connection_2">
126
+ <entry key="sourceID" type="xint" value="880"/>
127
+ <entry key="destID" type="xint" value="883"/>
128
+ <entry key="sourcePort" type="xint" value="1"/>
129
+ <entry key="destPort" type="xint" value="1"/>
130
+ </config>
131
+ <config key="connection_3">
132
+ <entry key="sourceID" type="xint" value="882"/>
133
+ <entry key="destID" type="xint" value="878"/>
134
+ <entry key="sourcePort" type="xint" value="1"/>
135
+ <entry key="destPort" type="xint" value="1"/>
136
+ </config>
137
+ <config key="connection_4">
138
+ <entry key="sourceID" type="xint" value="883"/>
139
+ <entry key="destID" type="xint" value="884"/>
140
+ <entry key="sourcePort" type="xint" value="1"/>
141
+ <entry key="destPort" type="xint" value="1"/>
142
+ </config>
143
+ <config key="connection_5">
144
+ <entry key="sourceID" type="xint" value="884"/>
145
+ <entry key="destID" type="xint" value="-1"/>
146
+ <entry key="sourcePort" type="xint" value="1"/>
147
+ <entry key="destPort" type="xint" value="0"/>
148
+ </config>
149
+ </config>
150
+ <config key="meta_in_ports">
151
+ <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
152
+ <config key="ui_settings">
153
+ <config key="extrainfo.node.bounds">
154
+ <entry key="array-size" type="xint" value="4"/>
155
+ <entry key="0" type="xint" value="20"/>
156
+ <entry key="1" type="xint" value="20"/>
157
+ <entry key="2" type="xint" value="50"/>
158
+ <entry key="3" type="xint" value="161"/>
159
+ </config>
160
+ </config>
161
+ <config key="port_enum">
162
+ <config key="inport_0">
163
+ <entry key="index" type="xint" value="0"/>
164
+ <entry key="name" type="xstring" value="Inport 0"/>
165
+ <config key="type">
166
+ <entry key="object_class" type="xstring" value="org.knime.core.node.BufferedDataTable"/>
167
+ </config>
168
+ </config>
169
+ </config>
170
+ </config>
171
+ <config key="meta_out_ports">
172
+ <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
173
+ <config key="ui_settings">
174
+ <config key="extrainfo.node.bounds">
175
+ <entry key="array-size" type="xint" value="4"/>
176
+ <entry key="0" type="xint" value="780"/>
177
+ <entry key="1" type="xint" value="20"/>
178
+ <entry key="2" type="xint" value="50"/>
179
+ <entry key="3" type="xint" value="161"/>
180
+ </config>
181
+ </config>
182
+ <config key="port_enum">
183
+ <config key="outport_0">
184
+ <entry key="index" type="xint" value="0"/>
185
+ <entry key="name" type="xstring" value="Connected to: Group table"/>
186
+ <config key="type">
187
+ <entry key="object_class" type="xstring" value="org.knime.core.node.BufferedDataTable"/>
188
+ </config>
189
+ </config>
190
+ </config>
191
+ </config>
192
+ <config key="workflow_editor_settings">
193
+ <entry key="workflow.editor.snapToGrid" type="xboolean" value="true"/>
194
+ <entry key="workflow.editor.ShowGrid" type="xboolean" value="true"/>
195
+ <entry key="workflow.editor.gridX" type="xint" value="20"/>
196
+ <entry key="workflow.editor.gridY" type="xint" value="20"/>
197
+ <entry key="workflow.editor.zoomLevel" type="xdouble" value="1.0"/>
198
+ <entry key="workflow.editor.curvedConnections" type="xboolean" value="false"/>
199
+ <entry key="workflow.editor.connectionWidth" type="xint" value="1"/>
200
+ </config>
201
+ </config>
@@ -0,0 +1,86 @@
1
+ <?xml version="1.0" encoding="UTF-8"?>
2
+ <config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
3
+ <entry key="node_file" type="xstring" value="settings.xml"/>
4
+ <config key="flow_stack"/>
5
+ <config key="internal_node_subsettings">
6
+ <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
7
+ </config>
8
+ <config key="model">
9
+ <config key="targetCol_Internals">
10
+ <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
11
+ <entry key="EnabledStatus" type="xboolean" value="true"/>
12
+ </config>
13
+ <entry key="targetCol" type="xstring" value="Sink name"/>
14
+ <config key="noMatchPolicy_Internals">
15
+ <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
16
+ <entry key="EnabledStatus" type="xboolean" value="true"/>
17
+ </config>
18
+ <entry key="noMatchPolicy" type="xstring" value="Input"/>
19
+ <config key="dictInputCol_Internals">
20
+ <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
21
+ <entry key="EnabledStatus" type="xboolean" value="true"/>
22
+ </config>
23
+ <config key="dictInputCol">
24
+ <entry key="useRowID" type="xboolean" value="false"/>
25
+ <entry key="columnName" type="xstring" value="Key"/>
26
+ </config>
27
+ <config key="dictOutputCol_Internals">
28
+ <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
29
+ <entry key="EnabledStatus" type="xboolean" value="true"/>
30
+ </config>
31
+ <config key="dictOutputCol">
32
+ <entry key="useRowID" type="xboolean" value="false"/>
33
+ <entry key="columnName" type="xstring" value="Value"/>
34
+ </config>
35
+ <config key="appendColumn_Internals">
36
+ <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
37
+ <entry key="EnabledStatus" type="xboolean" value="true"/>
38
+ </config>
39
+ <entry key="appendColumn" type="xboolean" value="false"/>
40
+ <config key="appendColumnName_Internals">
41
+ <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
42
+ <entry key="EnabledStatus" type="xboolean" value="false"/>
43
+ </config>
44
+ <entry key="appendColumnName" type="xstring" value="Replacement"/>
45
+ </config>
46
+ <config key="nodeAnnotation">
47
+ <entry key="text" type="xstring" value=""/>
48
+ <entry key="bgcolor" type="xint" value="16777215"/>
49
+ <entry key="x-coordinate" type="xint" value="933"/>
50
+ <entry key="y-coordinate" type="xint" value="679"/>
51
+ <entry key="width" type="xint" value="134"/>
52
+ <entry key="height" type="xint" value="19"/>
53
+ <entry key="alignment" type="xstring" value="CENTER"/>
54
+ <entry key="borderSize" type="xint" value="0"/>
55
+ <entry key="borderColor" type="xint" value="16777215"/>
56
+ <entry key="defFontSize" type="xint" value="11"/>
57
+ <entry key="annotation-version" type="xint" value="20151123"/>
58
+ <config key="styles"/>
59
+ </config>
60
+ <entry key="customDescription" type="xstring" isnull="true" value=""/>
61
+ <entry key="state" type="xstring" value="IDLE"/>
62
+ <entry key="factory" type="xstring" value="org.knime.base.node.preproc.cellreplace.CellReplacerNodeFactory"/>
63
+ <entry key="node-name" type="xstring" value="Cell Replacer"/>
64
+ <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
65
+ <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
66
+ <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
67
+ <entry key="node-bundle-version" type="xstring" value="3.6.1.v201808311359"/>
68
+ <entry key="node-feature-name" type="xstring" value="KNIME Core"/>
69
+ <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
70
+ <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
71
+ <entry key="node-feature-version" type="xstring" value="3.6.1.v201809030900"/>
72
+ <config key="factory_settings"/>
73
+ <entry key="name" type="xstring" value="Cell Replacer"/>
74
+ <entry key="hasContent" type="xboolean" value="false"/>
75
+ <entry key="isInactive" type="xboolean" value="false"/>
76
+ <config key="ports">
77
+ <config key="port_1">
78
+ <entry key="index" type="xint" value="1"/>
79
+ <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
80
+ </config>
81
+ </config>
82
+ <config key="filestores">
83
+ <entry key="file_store_location" type="xstring" isnull="true" value=""/>
84
+ <entry key="file_store_id" type="xstring" isnull="true" value=""/>
85
+ </config>
86
+ </config>