ro-crate 0.4.0
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- checksums.yaml +7 -0
- data/.github/workflows/docs.yml +25 -0
- data/.github/workflows/tests.yml +16 -0
- data/.gitignore +50 -0
- data/.ruby-version +1 -0
- data/Gemfile +3 -0
- data/Gemfile.lock +48 -0
- data/LICENSE +21 -0
- data/README.md +79 -0
- data/Rakefile +30 -0
- data/lib/ro_crate/json_ld_hash.rb +41 -0
- data/lib/ro_crate/model/contact_point.rb +13 -0
- data/lib/ro_crate/model/contextual_entity.rb +41 -0
- data/lib/ro_crate/model/crate.rb +211 -0
- data/lib/ro_crate/model/data_entity.rb +42 -0
- data/lib/ro_crate/model/directory.rb +60 -0
- data/lib/ro_crate/model/entity.rb +216 -0
- data/lib/ro_crate/model/entry.rb +57 -0
- data/lib/ro_crate/model/file.rb +76 -0
- data/lib/ro_crate/model/metadata.rb +38 -0
- data/lib/ro_crate/model/organization.rb +13 -0
- data/lib/ro_crate/model/person.rb +13 -0
- data/lib/ro_crate/model/preview.rb +43 -0
- data/lib/ro_crate/model/remote_entry.rb +46 -0
- data/lib/ro_crate/reader.rb +213 -0
- data/lib/ro_crate/ro-crate-preview.html.erb +55 -0
- data/lib/ro_crate/writer.rb +48 -0
- data/lib/ro_crate_ruby.rb +24 -0
- data/ro_crate.gemspec +18 -0
- data/test/crate_test.rb +201 -0
- data/test/directory_test.rb +45 -0
- data/test/entity_test.rb +73 -0
- data/test/fixtures/crate-spec1.1/file with spaces.txt +1 -0
- data/test/fixtures/crate-spec1.1/ro-crate-metadata.json +35 -0
- data/test/fixtures/data.csv +2 -0
- data/test/fixtures/directory.zip +0 -0
- data/test/fixtures/directory/data/binary.jpg +0 -0
- data/test/fixtures/directory/data/info.txt +1 -0
- data/test/fixtures/directory/data/nested.txt +1 -0
- data/test/fixtures/directory/info.txt +1 -0
- data/test/fixtures/directory/root.txt +1 -0
- data/test/fixtures/directory_crate/fish/data/binary.jpg +0 -0
- data/test/fixtures/directory_crate/fish/data/info.txt +1 -0
- data/test/fixtures/directory_crate/fish/data/nested.txt +1 -0
- data/test/fixtures/directory_crate/fish/info.txt +1 -0
- data/test/fixtures/directory_crate/fish/root.txt +1 -0
- data/test/fixtures/directory_crate/ro-crate-metadata.jsonld +25 -0
- data/test/fixtures/file with spaces.txt +1 -0
- data/test/fixtures/info.txt +1 -0
- data/test/fixtures/spaces/file with spaces.txt +1 -0
- data/test/fixtures/spaces/ro-crate-metadata.jsonld +25 -0
- data/test/fixtures/workflow-0.2.0.zip +0 -0
- data/test/fixtures/workflow-0.2.0/Dockerfile +1 -0
- data/test/fixtures/workflow-0.2.0/README.md +36 -0
- data/test/fixtures/workflow-0.2.0/ro-crate-metadata.jsonld +282 -0
- data/test/fixtures/workflow-0.2.0/test/test.sh +41 -0
- data/test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl +94 -0
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- data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Write per so (#1079)/Write csv_ j (#1077)/Make JSON (#1075)/Prepare json (#1083)/JSON Row Combiner (#999)/settings.xml +63 -0
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- data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Write per so (#1079)/Write csv_ j (#1077)/Make JSON (#1075)/Prepare json (#1083)/Rule Engine (#1087)/settings.xml +62 -0
- data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Write per so (#1079)/Write csv_ j (#1077)/Make JSON (#1075)/Prepare json (#1083)/workflow.knime +977 -0
- data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Write per so (#1079)/Write csv_ j (#1077)/Make JSON (#1075)/RowID (#1047)/settings.xml +90 -0
- data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Write per so (#1079)/Write csv_ j (#1077)/Make JSON (#1075)/workflow.knime +245 -0
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- data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Write per so (#1079)/Write csv_ j (#1077)/Write depict (#1053)/Column Filter (#1041)/settings.xml +79 -0
- data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Write per so (#1079)/Write csv_ j (#1077)/Write depict (#1053)/Column Filter (#983)/settings.xml +93 -0
- data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Write per so (#1079)/Write csv_ j (#1077)/Write depict (#1053)/Column Rename (#1035)/settings.xml +62 -0
- data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Write per so (#1079)/Write csv_ j (#1077)/Write depict (#1053)/Column Rename (#1044)/settings.xml +62 -0
- data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Write per so (#1079)/Write csv_ j (#1077)/Write depict (#1053)/Concatenate (#1043)/settings.xml +55 -0
- data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Write per so (#1079)/Write csv_ j (#1077)/Write depict (#1053)/Create Directory (#1074)/settings.xml +60 -0
- data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Write per so (#1079)/Write csv_ j (#1077)/Write depict (#1053)/GroupBy (#1033)/settings.xml +129 -0
- data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Write per so (#1079)/Write csv_ j (#1077)/Write depict (#1053)/Image Column Writer (#1023)/settings.xml +66 -0
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- data/test/fixtures/workflow-0.2.0/workflow/Core (#1081)/Write per so (#1079)/Write csv_ j (#1077)/Write depict (#1053)/InChIKey and (#1097)/RDKit From Molecule (#1097)/settings.xml +119 -0
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data/test/fixtures/workflow-0.2.0/workflow/Input config (#740)/File Upload (#765)/settings.xml
ADDED
@@ -0,0 +1,81 @@
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<entry key="node_file" type="xstring" value="settings.xml"/>
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4
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<config key="flow_stack"/>
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5
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<config key="internal_node_subsettings">
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6
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+
<entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
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7
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<config key="model">
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9
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+
<config key="defaultValue">
|
10
|
+
<entry key="path" type="xstring" value="source.csv"/>
|
11
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+
<entry key="pathValid" type="xboolean" value="true"/>
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12
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+
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13
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14
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18
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19
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20
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<entry key="flowvariablename" type="xstring" value="sourcefile"/>
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21
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<config key="types">
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22
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+
<entry key="array-size" type="xint" value="1"/>
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23
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<entry key="0" type="xstring" value=".csv"/>
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24
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+
</config>
|
25
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+
<entry key="error_message" type="xstring" value=""/>
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26
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<entry key="timeout" type="xint" value="5000"/>
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28
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+
</config>
|
29
|
+
<config key="variables">
|
30
|
+
<config key="defaultValue">
|
31
|
+
<config key="path">
|
32
|
+
<entry key="used_variable" type="xstring" value="WFVAR.input.sourcefile"/>
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33
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+
<entry key="exposed_variable" type="xstring" isnull="true" value=""/>
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+
</config>
|
35
|
+
</config>
|
36
|
+
</config>
|
37
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<config key="nodeAnnotation">
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<entry key="text" type="xstring" value="Source file path"/>
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<config key="styles"/>
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<config key="factory_settings"/>
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68
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<entry key="name" type="xstring" value="File Upload"/>
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<entry key="hasContent" type="xboolean" value="false"/>
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70
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<config key="ports">
|
72
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<config key="port_1">
|
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|
75
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</config>
|
76
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</config>
|
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<config key="filestores">
|
78
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<entry key="file_store_location" type="xstring" isnull="true" value=""/>
|
79
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<entry key="file_store_id" type="xstring" isnull="true" value=""/>
|
80
|
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</config>
|
81
|
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</config>
|
data/test/fixtures/workflow-0.2.0/workflow/Input config (#740)/File Upload (#766)/settings.xml
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|
+
<config key="model">
|
9
|
+
<config key="defaultValue">
|
10
|
+
<entry key="path" type="xstring" value=""/>
|
11
|
+
<entry key="pathValid" type="xboolean" value="true"/>
|
12
|
+
</config>
|
13
|
+
<entry key="label" type="xstring" value="Rules file (.csv)"/>
|
14
|
+
<entry key="description" type="xstring" value="Path to the file defining reactions rules.%%00010%%00010The rule files should be a .csv file with a header. The following columns are mandatory:%%00010%%00010- "Rule ID": unique rule ID (string value).%%00010%%00010- "Rule": reaction SMARTS describing the chemical reaction. Please notice that left and right parts should be surrounded by parenthesis. For instance A>>B should be writen as (A)>>(B). In a same way A1.A2>>B should be written as (A1.A2)>>(B).%%00010%%00010The following columns are optional (default values are used if not specified):%%00010%%00010- "EC number": EC number to associate with a rule (string value). Default: "NOEC"%%00010%%00010- "Reaction order": the reaction order, i.e. the number of substrate to consider in the reaction SMARTS. Default: 1.%%00010%%00010- "Diameter": the diameter to associate with the rule. Default: 1000.%%00010%%00010- "Score"; the score to associate with the rule. Notice this should be considered as penalty, i.e. the smaller is the better. Default: 1000."/>
|
15
|
+
<entry key="hideInWizard" type="xboolean" value="false"/>
|
16
|
+
<entry key="hideInDialog" type="xboolean" value="false"/>
|
17
|
+
<entry key="required" type="xboolean" value="true"/>
|
18
|
+
<entry key="parameterName" type="xstring" value="rulesfile"/>
|
19
|
+
<entry key="customCSS" type="xstring" value=""/>
|
20
|
+
<entry key="flowvariablename" type="xstring" value="rulesfile"/>
|
21
|
+
<config key="types">
|
22
|
+
<entry key="array-size" type="xint" value="1"/>
|
23
|
+
<entry key="0" type="xstring" value=".csv"/>
|
24
|
+
</config>
|
25
|
+
<entry key="error_message" type="xstring" value=""/>
|
26
|
+
<entry key="timeout" type="xint" value="5000"/>
|
27
|
+
<entry key="disable_output" type="xboolean" value="true"/>
|
28
|
+
</config>
|
29
|
+
<config key="variables">
|
30
|
+
<config key="defaultValue">
|
31
|
+
<config key="path">
|
32
|
+
<entry key="used_variable" type="xstring" value="WFVAR.input.rulesfile"/>
|
33
|
+
<entry key="exposed_variable" type="xstring" isnull="true" value=""/>
|
34
|
+
</config>
|
35
|
+
</config>
|
36
|
+
</config>
|
37
|
+
<config key="nodeAnnotation">
|
38
|
+
<entry key="text" type="xstring" value="Rules file path"/>
|
39
|
+
<entry key="bgcolor" type="xint" value="16777215"/>
|
40
|
+
<entry key="x-coordinate" type="xint" value="189"/>
|
41
|
+
<entry key="y-coordinate" type="xint" value="319"/>
|
42
|
+
<entry key="width" type="xint" value="143"/>
|
43
|
+
<entry key="height" type="xint" value="17"/>
|
44
|
+
<entry key="alignment" type="xstring" value="CENTER"/>
|
45
|
+
<entry key="borderSize" type="xint" value="0"/>
|
46
|
+
<entry key="borderColor" type="xint" value="16777215"/>
|
47
|
+
<entry key="defFontSize" type="xint" value="11"/>
|
48
|
+
<entry key="annotation-version" type="xint" value="20151123"/>
|
49
|
+
<config key="styles"/>
|
50
|
+
</config>
|
51
|
+
<entry key="customDescription" type="xstring" isnull="true" value=""/>
|
52
|
+
<entry key="state" type="xstring" value="CONFIGURED"/>
|
53
|
+
<config key="nodecontainer_message">
|
54
|
+
<entry key="type" type="xstring" value="WARNING"/>
|
55
|
+
<entry key="message" type="xstring" value="No such file: "/Applications/KNIME 3.6.1.app/Contents/MacOS/rules.csv""/>
|
56
|
+
</config>
|
57
|
+
<entry key="factory" type="xstring" value="org.knime.js.base.node.quickform.input.fileupload.FileUploadQuickFormNodeFactory"/>
|
58
|
+
<entry key="node-name" type="xstring" value="File Upload"/>
|
59
|
+
<entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
|
60
|
+
<entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
|
61
|
+
<entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
|
62
|
+
<entry key="node-bundle-version" type="xstring" value="3.6.1.v201808311614"/>
|
63
|
+
<entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
|
64
|
+
<entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
|
65
|
+
<entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
|
66
|
+
<entry key="node-feature-version" type="xstring" value="3.6.1.v201808311614"/>
|
67
|
+
<config key="factory_settings"/>
|
68
|
+
<entry key="name" type="xstring" value="File Upload"/>
|
69
|
+
<entry key="hasContent" type="xboolean" value="false"/>
|
70
|
+
<entry key="isInactive" type="xboolean" value="false"/>
|
71
|
+
<config key="ports">
|
72
|
+
<config key="port_1">
|
73
|
+
<entry key="index" type="xint" value="1"/>
|
74
|
+
<entry key="port_dir_location" type="xstring" isnull="true" value=""/>
|
75
|
+
</config>
|
76
|
+
</config>
|
77
|
+
<config key="filestores">
|
78
|
+
<entry key="file_store_location" type="xstring" isnull="true" value=""/>
|
79
|
+
<entry key="file_store_id" type="xstring" isnull="true" value=""/>
|
80
|
+
</config>
|
81
|
+
</config>
|
data/test/fixtures/workflow-0.2.0/workflow/Input config (#740)/File Upload (#767)/settings.xml
ADDED
@@ -0,0 +1,89 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
|
3
|
+
<entry key="node_file" type="xstring" value="settings.xml"/>
|
4
|
+
<config key="flow_stack">
|
5
|
+
<config key="Variable_0">
|
6
|
+
<entry key="type" type="xstring" value="variable"/>
|
7
|
+
<entry key="name" type="xstring" value="sinkfile"/>
|
8
|
+
<entry key="class" type="xstring" value="STRING"/>
|
9
|
+
<entry key="value" type="xstring" value="//"/>
|
10
|
+
</config>
|
11
|
+
<config key="Variable_1">
|
12
|
+
<entry key="type" type="xstring" value="variable"/>
|
13
|
+
<entry key="name" type="xstring" value="sinkfile (URL)"/>
|
14
|
+
<entry key="class" type="xstring" value="STRING"/>
|
15
|
+
<entry key="value" type="xstring" value="file:/"/>
|
16
|
+
</config>
|
17
|
+
</config>
|
18
|
+
<config key="internal_node_subsettings">
|
19
|
+
<entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
|
20
|
+
</config>
|
21
|
+
<config key="model">
|
22
|
+
<config key="defaultValue">
|
23
|
+
<entry key="path" type="xstring" value=""/>
|
24
|
+
<entry key="pathValid" type="xboolean" value="true"/>
|
25
|
+
</config>
|
26
|
+
<entry key="label" type="xstring" value="Sink file (no Sink if the field is left empty) (.csv)"/>
|
27
|
+
<entry key="description" type="xstring" value="Path to the file defining sink compound(s). No sink is imported if the the field is left empty.%%00010%%00010The source file should be a .csv file using the same format than the source file (see Source file)."/>
|
28
|
+
<entry key="hideInWizard" type="xboolean" value="false"/>
|
29
|
+
<entry key="hideInDialog" type="xboolean" value="false"/>
|
30
|
+
<entry key="required" type="xboolean" value="true"/>
|
31
|
+
<entry key="parameterName" type="xstring" value="sinkfile"/>
|
32
|
+
<entry key="customCSS" type="xstring" value=""/>
|
33
|
+
<entry key="flowvariablename" type="xstring" value="sinkfile"/>
|
34
|
+
<config key="types">
|
35
|
+
<entry key="array-size" type="xint" value="0"/>
|
36
|
+
</config>
|
37
|
+
<entry key="error_message" type="xstring" value=""/>
|
38
|
+
<entry key="timeout" type="xint" value="5000"/>
|
39
|
+
<entry key="disable_output" type="xboolean" value="false"/>
|
40
|
+
</config>
|
41
|
+
<config key="variables">
|
42
|
+
<config key="defaultValue">
|
43
|
+
<config key="path">
|
44
|
+
<entry key="used_variable" type="xstring" value="WFVAR.input.sinkfile"/>
|
45
|
+
<entry key="exposed_variable" type="xstring" isnull="true" value=""/>
|
46
|
+
</config>
|
47
|
+
</config>
|
48
|
+
</config>
|
49
|
+
<config key="nodeAnnotation">
|
50
|
+
<entry key="text" type="xstring" value="Sink file path"/>
|
51
|
+
<entry key="bgcolor" type="xint" value="16777215"/>
|
52
|
+
<entry key="x-coordinate" type="xint" value="549"/>
|
53
|
+
<entry key="y-coordinate" type="xint" value="139"/>
|
54
|
+
<entry key="width" type="xint" value="143"/>
|
55
|
+
<entry key="height" type="xint" value="17"/>
|
56
|
+
<entry key="alignment" type="xstring" value="CENTER"/>
|
57
|
+
<entry key="borderSize" type="xint" value="0"/>
|
58
|
+
<entry key="borderColor" type="xint" value="16777215"/>
|
59
|
+
<entry key="defFontSize" type="xint" value="11"/>
|
60
|
+
<entry key="annotation-version" type="xint" value="20151123"/>
|
61
|
+
<config key="styles"/>
|
62
|
+
</config>
|
63
|
+
<entry key="customDescription" type="xstring" isnull="true" value=""/>
|
64
|
+
<entry key="state" type="xstring" value="CONFIGURED"/>
|
65
|
+
<entry key="factory" type="xstring" value="org.knime.js.base.node.quickform.input.fileupload.FileUploadQuickFormNodeFactory"/>
|
66
|
+
<entry key="node-name" type="xstring" value="File Upload"/>
|
67
|
+
<entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
|
68
|
+
<entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
|
69
|
+
<entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
|
70
|
+
<entry key="node-bundle-version" type="xstring" value="3.6.1.v201808311614"/>
|
71
|
+
<entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
|
72
|
+
<entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
|
73
|
+
<entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
|
74
|
+
<entry key="node-feature-version" type="xstring" value="3.6.1.v201808311614"/>
|
75
|
+
<config key="factory_settings"/>
|
76
|
+
<entry key="name" type="xstring" value="File Upload"/>
|
77
|
+
<entry key="hasContent" type="xboolean" value="false"/>
|
78
|
+
<entry key="isInactive" type="xboolean" value="false"/>
|
79
|
+
<config key="ports">
|
80
|
+
<config key="port_1">
|
81
|
+
<entry key="index" type="xint" value="1"/>
|
82
|
+
<entry key="port_dir_location" type="xstring" isnull="true" value=""/>
|
83
|
+
</config>
|
84
|
+
</config>
|
85
|
+
<config key="filestores">
|
86
|
+
<entry key="file_store_location" type="xstring" isnull="true" value=""/>
|
87
|
+
<entry key="file_store_id" type="xstring" isnull="true" value=""/>
|
88
|
+
</config>
|
89
|
+
</config>
|
data/test/fixtures/workflow-0.2.0/workflow/Input config (#740)/Integer Input (#745)/settings.xml
ADDED
@@ -0,0 +1,80 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
|
3
|
+
<entry key="node_file" type="xstring" value="settings.xml"/>
|
4
|
+
<config key="flow_stack">
|
5
|
+
<config key="Variable_0">
|
6
|
+
<entry key="type" type="xstring" value="variable"/>
|
7
|
+
<entry key="name" type="xstring" value="dmax"/>
|
8
|
+
<entry key="class" type="xstring" value="INTEGER"/>
|
9
|
+
<entry key="value" type="xint" value="1000"/>
|
10
|
+
</config>
|
11
|
+
</config>
|
12
|
+
<config key="internal_node_subsettings">
|
13
|
+
<entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
|
14
|
+
</config>
|
15
|
+
<config key="model">
|
16
|
+
<config key="defaultValue">
|
17
|
+
<entry key="integer" type="xint" value="1000"/>
|
18
|
+
</config>
|
19
|
+
<entry key="label" type="xstring" value="Maximum diameter"/>
|
20
|
+
<entry key="description" type="xstring" value="Maximum allowed diameter for rules. Default: 1000."/>
|
21
|
+
<entry key="hideInWizard" type="xboolean" value="false"/>
|
22
|
+
<entry key="hideInDialog" type="xboolean" value="false"/>
|
23
|
+
<entry key="required" type="xboolean" value="true"/>
|
24
|
+
<entry key="parameterName" type="xstring" value="dmax"/>
|
25
|
+
<entry key="customCSS" type="xstring" value=""/>
|
26
|
+
<entry key="flowvariablename" type="xstring" value="dmax"/>
|
27
|
+
<entry key="use_min" type="xboolean" value="false"/>
|
28
|
+
<entry key="use_max" type="xboolean" value="false"/>
|
29
|
+
<entry key="min" type="xint" value="0"/>
|
30
|
+
<entry key="max" type="xint" value="100"/>
|
31
|
+
</config>
|
32
|
+
<config key="variables">
|
33
|
+
<config key="defaultValue">
|
34
|
+
<config key="integer">
|
35
|
+
<entry key="used_variable" type="xstring" value="WFVAR.input.dmax"/>
|
36
|
+
<entry key="exposed_variable" type="xstring" isnull="true" value=""/>
|
37
|
+
</config>
|
38
|
+
</config>
|
39
|
+
</config>
|
40
|
+
<config key="nodeAnnotation">
|
41
|
+
<entry key="text" type="xstring" value="Maximum rule%%00010diameter"/>
|
42
|
+
<entry key="bgcolor" type="xint" value="16777215"/>
|
43
|
+
<entry key="x-coordinate" type="xint" value="489"/>
|
44
|
+
<entry key="y-coordinate" type="xint" value="319"/>
|
45
|
+
<entry key="width" type="xint" value="143"/>
|
46
|
+
<entry key="height" type="xint" value="34"/>
|
47
|
+
<entry key="alignment" type="xstring" value="CENTER"/>
|
48
|
+
<entry key="borderSize" type="xint" value="0"/>
|
49
|
+
<entry key="borderColor" type="xint" value="16777215"/>
|
50
|
+
<entry key="defFontSize" type="xint" value="11"/>
|
51
|
+
<entry key="annotation-version" type="xint" value="20151123"/>
|
52
|
+
<config key="styles"/>
|
53
|
+
</config>
|
54
|
+
<entry key="customDescription" type="xstring" isnull="true" value=""/>
|
55
|
+
<entry key="state" type="xstring" value="CONFIGURED"/>
|
56
|
+
<entry key="factory" type="xstring" value="org.knime.js.base.node.quickform.input.integer.IntInputQuickFormNodeFactory"/>
|
57
|
+
<entry key="node-name" type="xstring" value="Integer Input"/>
|
58
|
+
<entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
|
59
|
+
<entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
|
60
|
+
<entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
|
61
|
+
<entry key="node-bundle-version" type="xstring" value="3.6.1.v201808311614"/>
|
62
|
+
<entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
|
63
|
+
<entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
|
64
|
+
<entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
|
65
|
+
<entry key="node-feature-version" type="xstring" value="3.6.1.v201808311614"/>
|
66
|
+
<config key="factory_settings"/>
|
67
|
+
<entry key="name" type="xstring" value="Integer Input"/>
|
68
|
+
<entry key="hasContent" type="xboolean" value="false"/>
|
69
|
+
<entry key="isInactive" type="xboolean" value="false"/>
|
70
|
+
<config key="ports">
|
71
|
+
<config key="port_1">
|
72
|
+
<entry key="index" type="xint" value="1"/>
|
73
|
+
<entry key="port_dir_location" type="xstring" isnull="true" value=""/>
|
74
|
+
</config>
|
75
|
+
</config>
|
76
|
+
<config key="filestores">
|
77
|
+
<entry key="file_store_location" type="xstring" isnull="true" value=""/>
|
78
|
+
<entry key="file_store_id" type="xstring" isnull="true" value=""/>
|
79
|
+
</config>
|
80
|
+
</config>
|
data/test/fixtures/workflow-0.2.0/workflow/Input config (#740)/Integer Input (#747)/settings.xml
ADDED
@@ -0,0 +1,80 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
|
3
|
+
<entry key="node_file" type="xstring" value="settings.xml"/>
|
4
|
+
<config key="flow_stack">
|
5
|
+
<config key="Variable_0">
|
6
|
+
<entry key="type" type="xstring" value="variable"/>
|
7
|
+
<entry key="name" type="xstring" value="dmin"/>
|
8
|
+
<entry key="class" type="xstring" value="INTEGER"/>
|
9
|
+
<entry key="value" type="xint" value="0"/>
|
10
|
+
</config>
|
11
|
+
</config>
|
12
|
+
<config key="internal_node_subsettings">
|
13
|
+
<entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
|
14
|
+
</config>
|
15
|
+
<config key="model">
|
16
|
+
<config key="defaultValue">
|
17
|
+
<entry key="integer" type="xint" value="0"/>
|
18
|
+
</config>
|
19
|
+
<entry key="label" type="xstring" value="Minimum rule diameter"/>
|
20
|
+
<entry key="description" type="xstring" value="The minimum allowed diameter for rules. Default: 0."/>
|
21
|
+
<entry key="hideInWizard" type="xboolean" value="false"/>
|
22
|
+
<entry key="hideInDialog" type="xboolean" value="false"/>
|
23
|
+
<entry key="required" type="xboolean" value="true"/>
|
24
|
+
<entry key="parameterName" type="xstring" value="dmin"/>
|
25
|
+
<entry key="customCSS" type="xstring" value=""/>
|
26
|
+
<entry key="flowvariablename" type="xstring" value="dmin"/>
|
27
|
+
<entry key="use_min" type="xboolean" value="false"/>
|
28
|
+
<entry key="use_max" type="xboolean" value="false"/>
|
29
|
+
<entry key="min" type="xint" value="0"/>
|
30
|
+
<entry key="max" type="xint" value="100"/>
|
31
|
+
</config>
|
32
|
+
<config key="variables">
|
33
|
+
<config key="defaultValue">
|
34
|
+
<config key="integer">
|
35
|
+
<entry key="used_variable" type="xstring" value="WFVAR.input.dmin"/>
|
36
|
+
<entry key="exposed_variable" type="xstring" isnull="true" value=""/>
|
37
|
+
</config>
|
38
|
+
</config>
|
39
|
+
</config>
|
40
|
+
<config key="nodeAnnotation">
|
41
|
+
<entry key="text" type="xstring" value="Minimum rule%%00010diameter"/>
|
42
|
+
<entry key="bgcolor" type="xint" value="16777215"/>
|
43
|
+
<entry key="x-coordinate" type="xint" value="349"/>
|
44
|
+
<entry key="y-coordinate" type="xint" value="319"/>
|
45
|
+
<entry key="width" type="xint" value="143"/>
|
46
|
+
<entry key="height" type="xint" value="34"/>
|
47
|
+
<entry key="alignment" type="xstring" value="CENTER"/>
|
48
|
+
<entry key="borderSize" type="xint" value="0"/>
|
49
|
+
<entry key="borderColor" type="xint" value="16777215"/>
|
50
|
+
<entry key="defFontSize" type="xint" value="11"/>
|
51
|
+
<entry key="annotation-version" type="xint" value="20151123"/>
|
52
|
+
<config key="styles"/>
|
53
|
+
</config>
|
54
|
+
<entry key="customDescription" type="xstring" isnull="true" value=""/>
|
55
|
+
<entry key="state" type="xstring" value="CONFIGURED"/>
|
56
|
+
<entry key="factory" type="xstring" value="org.knime.js.base.node.quickform.input.integer.IntInputQuickFormNodeFactory"/>
|
57
|
+
<entry key="node-name" type="xstring" value="Integer Input"/>
|
58
|
+
<entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
|
59
|
+
<entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
|
60
|
+
<entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
|
61
|
+
<entry key="node-bundle-version" type="xstring" value="3.6.1.v201808311614"/>
|
62
|
+
<entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
|
63
|
+
<entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
|
64
|
+
<entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
|
65
|
+
<entry key="node-feature-version" type="xstring" value="3.6.1.v201808311614"/>
|
66
|
+
<config key="factory_settings"/>
|
67
|
+
<entry key="name" type="xstring" value="Integer Input"/>
|
68
|
+
<entry key="hasContent" type="xboolean" value="false"/>
|
69
|
+
<entry key="isInactive" type="xboolean" value="false"/>
|
70
|
+
<config key="ports">
|
71
|
+
<config key="port_1">
|
72
|
+
<entry key="index" type="xint" value="1"/>
|
73
|
+
<entry key="port_dir_location" type="xstring" isnull="true" value=""/>
|
74
|
+
</config>
|
75
|
+
</config>
|
76
|
+
<config key="filestores">
|
77
|
+
<entry key="file_store_location" type="xstring" isnull="true" value=""/>
|
78
|
+
<entry key="file_store_id" type="xstring" isnull="true" value=""/>
|
79
|
+
</config>
|
80
|
+
</config>
|
data/test/fixtures/workflow-0.2.0/workflow/Input config (#740)/Integer Input (#748)/settings.xml
ADDED
@@ -0,0 +1,80 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
|
3
|
+
<entry key="node_file" type="xstring" value="settings.xml"/>
|
4
|
+
<config key="flow_stack">
|
5
|
+
<config key="Variable_0">
|
6
|
+
<entry key="type" type="xstring" value="variable"/>
|
7
|
+
<entry key="name" type="xstring" value="max-steps"/>
|
8
|
+
<entry key="class" type="xstring" value="INTEGER"/>
|
9
|
+
<entry key="value" type="xint" value="1"/>
|
10
|
+
</config>
|
11
|
+
</config>
|
12
|
+
<config key="internal_node_subsettings">
|
13
|
+
<entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
|
14
|
+
</config>
|
15
|
+
<config key="model">
|
16
|
+
<config key="defaultValue">
|
17
|
+
<entry key="integer" type="xint" value="1"/>
|
18
|
+
</config>
|
19
|
+
<entry key="label" type="xstring" value="Pathway length"/>
|
20
|
+
<entry key="description" type="xstring" value="Number of iteration to proceed. Default: 1.%%00010%%00010Notice that pathway length is an important parameter regarding combanory explosion. This value will impact execution time and memory consumption. We do recommand to use pathway length lower than or equal to 3 on a standard workstation."/>
|
21
|
+
<entry key="hideInWizard" type="xboolean" value="false"/>
|
22
|
+
<entry key="hideInDialog" type="xboolean" value="false"/>
|
23
|
+
<entry key="required" type="xboolean" value="true"/>
|
24
|
+
<entry key="parameterName" type="xstring" value="max-steps"/>
|
25
|
+
<entry key="customCSS" type="xstring" value=""/>
|
26
|
+
<entry key="flowvariablename" type="xstring" value="max-steps"/>
|
27
|
+
<entry key="use_min" type="xboolean" value="false"/>
|
28
|
+
<entry key="use_max" type="xboolean" value="false"/>
|
29
|
+
<entry key="min" type="xint" value="0"/>
|
30
|
+
<entry key="max" type="xint" value="100"/>
|
31
|
+
</config>
|
32
|
+
<config key="variables">
|
33
|
+
<config key="defaultValue">
|
34
|
+
<config key="integer">
|
35
|
+
<entry key="used_variable" type="xstring" value="WFVAR.input.max-steps"/>
|
36
|
+
<entry key="exposed_variable" type="xstring" isnull="true" value=""/>
|
37
|
+
</config>
|
38
|
+
</config>
|
39
|
+
</config>
|
40
|
+
<config key="nodeAnnotation">
|
41
|
+
<entry key="text" type="xstring" value="Maximum pathway%%00010length"/>
|
42
|
+
<entry key="bgcolor" type="xint" value="16777215"/>
|
43
|
+
<entry key="x-coordinate" type="xint" value="189"/>
|
44
|
+
<entry key="y-coordinate" type="xint" value="519"/>
|
45
|
+
<entry key="width" type="xint" value="143"/>
|
46
|
+
<entry key="height" type="xint" value="34"/>
|
47
|
+
<entry key="alignment" type="xstring" value="CENTER"/>
|
48
|
+
<entry key="borderSize" type="xint" value="0"/>
|
49
|
+
<entry key="borderColor" type="xint" value="16777215"/>
|
50
|
+
<entry key="defFontSize" type="xint" value="11"/>
|
51
|
+
<entry key="annotation-version" type="xint" value="20151123"/>
|
52
|
+
<config key="styles"/>
|
53
|
+
</config>
|
54
|
+
<entry key="customDescription" type="xstring" isnull="true" value=""/>
|
55
|
+
<entry key="state" type="xstring" value="CONFIGURED"/>
|
56
|
+
<entry key="factory" type="xstring" value="org.knime.js.base.node.quickform.input.integer.IntInputQuickFormNodeFactory"/>
|
57
|
+
<entry key="node-name" type="xstring" value="Integer Input"/>
|
58
|
+
<entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
|
59
|
+
<entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
|
60
|
+
<entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
|
61
|
+
<entry key="node-bundle-version" type="xstring" value="3.6.1.v201808311614"/>
|
62
|
+
<entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
|
63
|
+
<entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
|
64
|
+
<entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
|
65
|
+
<entry key="node-feature-version" type="xstring" value="3.6.1.v201808311614"/>
|
66
|
+
<config key="factory_settings"/>
|
67
|
+
<entry key="name" type="xstring" value="Integer Input"/>
|
68
|
+
<entry key="hasContent" type="xboolean" value="false"/>
|
69
|
+
<entry key="isInactive" type="xboolean" value="false"/>
|
70
|
+
<config key="ports">
|
71
|
+
<config key="port_1">
|
72
|
+
<entry key="index" type="xint" value="1"/>
|
73
|
+
<entry key="port_dir_location" type="xstring" isnull="true" value=""/>
|
74
|
+
</config>
|
75
|
+
</config>
|
76
|
+
<config key="filestores">
|
77
|
+
<entry key="file_store_location" type="xstring" isnull="true" value=""/>
|
78
|
+
<entry key="file_store_id" type="xstring" isnull="true" value=""/>
|
79
|
+
</config>
|
80
|
+
</config>
|