rb-gsl 1.16.0.4 → 1.16.0.5
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- checksums.yaml +4 -4
- data/.gitignore +12 -0
- data/.travis.yml +24 -0
- data/AUTHORS +6 -0
- data/COPYING +341 -339
- data/ChangeLog +608 -587
- data/Gemfile +4 -0
- data/README.md +77 -0
- data/Rakefile +14 -33
- data/THANKS +1 -1
- data/examples/blas/blas.rb +1 -1
- data/examples/bspline.rb +3 -3
- data/examples/complex/functions.rb +4 -4
- data/examples/complex/mul.rb +1 -1
- data/examples/const/physconst.rb +4 -4
- data/examples/const/travel.rb +4 -4
- data/examples/eigen/nonsymmv.rb +1 -1
- data/examples/eigen/qhoscillator.rb +3 -3
- data/examples/fft/radix2.rb +1 -1
- data/examples/fft/real-halfcomplex.rb +3 -3
- data/examples/fft/real-halfcomplex2.rb +3 -3
- data/examples/fit/expfit.rb +1 -1
- data/examples/fit/multifit.rb +1 -1
- data/examples/fit/ndlinear.rb +44 -44
- data/examples/fit/nonlinearfit.rb +1 -1
- data/examples/fit/wlinear.rb +3 -3
- data/examples/function/function.rb +1 -1
- data/examples/function/min.rb +1 -1
- data/examples/function/synchrotron.rb +2 -2
- data/examples/gallery/koch.rb +1 -1
- data/examples/histogram/cauchy.rb +2 -2
- data/examples/histogram/exponential.rb +1 -1
- data/examples/histogram/histo3d.rb +1 -1
- data/examples/histogram/histogram-pdf.rb +2 -2
- data/examples/histogram/xexp.rb +1 -1
- data/examples/integration/ahmed.rb +2 -2
- data/examples/integration/cosmology.rb +7 -7
- data/examples/integration/friedmann.rb +4 -4
- data/examples/integration/qng.rb +1 -1
- data/examples/interp/demo.rb +2 -2
- data/examples/linalg/LQ_solve.rb +1 -1
- data/examples/linalg/LU.rb +1 -1
- data/examples/linalg/LU2.rb +1 -1
- data/examples/linalg/LU_narray.rb +1 -1
- data/examples/linalg/PTLQ.rb +1 -1
- data/examples/linalg/QRPT.rb +1 -1
- data/examples/linalg/chol.rb +1 -1
- data/examples/linalg/chol_narray.rb +1 -1
- data/examples/linalg/complex.rb +1 -1
- data/examples/math/elementary.rb +1 -1
- data/examples/math/functions.rb +1 -1
- data/examples/math/inf_nan.rb +1 -1
- data/examples/math/minmax.rb +1 -1
- data/examples/math/power.rb +1 -1
- data/examples/math/test.rb +1 -1
- data/examples/min.rb +1 -1
- data/examples/multimin/bundle.rb +1 -1
- data/examples/multimin/cqp.rb +17 -17
- data/examples/multiroot/fsolver3.rb +1 -1
- data/examples/odeiv/binarysystem.rb +12 -12
- data/examples/odeiv/demo.rb +3 -3
- data/examples/odeiv/frei1.rb +7 -7
- data/examples/odeiv/frei2.rb +4 -4
- data/examples/odeiv/oscillator.rb +1 -1
- data/examples/odeiv/sedov.rb +3 -3
- data/examples/odeiv/whitedwarf.rb +11 -11
- data/examples/permutation/ex1.rb +2 -2
- data/examples/permutation/permutation.rb +1 -1
- data/examples/poly/demo.rb +1 -1
- data/examples/random/diffusion.rb +1 -1
- data/examples/random/generator.rb +2 -2
- data/examples/random/randomwalk.rb +3 -3
- data/examples/random/rng.rb +1 -1
- data/examples/roots/bisection.rb +1 -1
- data/examples/roots/brent.rb +1 -1
- data/examples/roots/demo.rb +1 -1
- data/examples/roots/newton.rb +2 -2
- data/examples/roots/recombination.gp +0 -1
- data/examples/sf/hyperg.rb +1 -1
- data/examples/sf/sphbessel.rb +1 -1
- data/examples/sort/sort.rb +1 -1
- data/examples/tamu_anova.rb +4 -4
- data/examples/vector/add.rb +1 -1
- data/examples/vector/decimate.rb +1 -1
- data/examples/vector/gnuplot.rb +8 -8
- data/examples/vector/vector.rb +2 -2
- data/examples/wavelet/wavelet1.rb +1 -1
- data/ext/{gsl → gsl_native}/alf.c +9 -9
- data/ext/{gsl → gsl_native}/array.c +64 -151
- data/ext/{gsl → gsl_native}/array_complex.c +61 -63
- data/ext/{gsl → gsl_native}/blas.c +0 -0
- data/ext/{gsl → gsl_native}/blas1.c +32 -32
- data/ext/{gsl → gsl_native}/blas2.c +54 -58
- data/ext/{gsl → gsl_native}/blas3.c +54 -54
- data/ext/{gsl → gsl_native}/block.c +3 -6
- data/ext/{gsl/block_source.c → gsl_native/block_source.h} +109 -111
- data/ext/gsl_native/bspline.c +122 -0
- data/ext/{gsl → gsl_native}/bundle.c +0 -0
- data/ext/{gsl → gsl_native}/cdf.c +76 -88
- data/ext/{gsl → gsl_native}/cheb.c +74 -85
- data/ext/{gsl → gsl_native}/combination.c +9 -16
- data/ext/{gsl → gsl_native}/common.c +7 -37
- data/ext/{gsl → gsl_native}/complex.c +113 -115
- data/ext/gsl_native/const.c +331 -0
- data/ext/{gsl → gsl_native}/const_additional.c +12 -33
- data/ext/gsl_native/cqp.c +283 -0
- data/ext/{gsl → gsl_native}/deriv.c +22 -30
- data/ext/{gsl → gsl_native}/dht.c +20 -28
- data/ext/{gsl → gsl_native}/diff.c +23 -25
- data/ext/{gsl → gsl_native}/dirac.c +44 -45
- data/ext/{gsl → gsl_native}/eigen.c +1031 -1082
- data/ext/{gsl → gsl_native}/error.c +13 -13
- data/ext/{gsl → gsl_native}/extconf.rb +5 -13
- data/ext/{gsl → gsl_native}/fft.c +192 -198
- data/ext/{gsl → gsl_native}/fit.c +16 -16
- data/ext/gsl_native/fresnel.c +312 -0
- data/ext/{gsl → gsl_native}/function.c +29 -35
- data/ext/{gsl → gsl_native}/geometry.c +15 -15
- data/ext/{gsl → gsl_native}/graph.c +37 -87
- data/ext/{gsl → gsl_native}/gsl.c +10 -23
- data/ext/{gsl → gsl_native}/gsl_narray.c +15 -24
- data/ext/{gsl → gsl_native}/histogram.c +123 -150
- data/ext/{gsl → gsl_native}/histogram2d.c +71 -96
- data/ext/{gsl → gsl_native}/histogram3d.c +72 -72
- data/ext/{gsl → gsl_native}/histogram3d_source.c +195 -196
- data/ext/{gsl → gsl_native}/histogram_find.c +31 -33
- data/ext/{gsl → gsl_native}/histogram_oper.c +43 -52
- data/ext/{gsl → gsl_native}/ieee.c +7 -15
- data/ext/{gsl → gsl_native}/include/rb_gsl.h +0 -7
- data/ext/{gsl → gsl_native}/include/rb_gsl_array.h +15 -25
- data/ext/{gsl → gsl_native}/include/rb_gsl_cheb.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_common.h +44 -52
- data/ext/{gsl → gsl_native}/include/rb_gsl_complex.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_const.h +0 -5
- data/ext/{gsl → gsl_native}/include/rb_gsl_dirac.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_eigen.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_fft.h +0 -3
- data/ext/{gsl → gsl_native}/include/rb_gsl_fit.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_function.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_graph.h +2 -2
- data/ext/{gsl → gsl_native}/include/rb_gsl_histogram.h +8 -8
- data/ext/{gsl → gsl_native}/include/rb_gsl_histogram3d.h +50 -50
- data/ext/{gsl → gsl_native}/include/rb_gsl_integration.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_interp.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_linalg.h +0 -1
- data/ext/{gsl → gsl_native}/include/rb_gsl_math.h +0 -4
- data/ext/{gsl → gsl_native}/include/rb_gsl_odeiv.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_poly.h +3 -3
- data/ext/{gsl → gsl_native}/include/rb_gsl_rational.h +1 -1
- data/ext/{gsl → gsl_native}/include/rb_gsl_rng.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_root.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_sf.h +39 -43
- data/ext/{gsl → gsl_native}/include/rb_gsl_statistics.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_tensor.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_with_narray.h +0 -0
- data/ext/{gsl → gsl_native}/include/templates_off.h +0 -0
- data/ext/{gsl → gsl_native}/include/templates_on.h +1 -1
- data/ext/{gsl → gsl_native}/integration.c +160 -183
- data/ext/{gsl → gsl_native}/interp.c +23 -31
- data/ext/gsl_native/jacobi.c +733 -0
- data/ext/{gsl → gsl_native}/linalg.c +448 -576
- data/ext/{gsl → gsl_native}/linalg_complex.c +84 -98
- data/ext/{gsl → gsl_native}/math.c +45 -63
- data/ext/{gsl → gsl_native}/matrix.c +4 -6
- data/ext/{gsl → gsl_native}/matrix_complex.c +111 -114
- data/ext/{gsl → gsl_native}/matrix_double.c +74 -77
- data/ext/{gsl → gsl_native}/matrix_int.c +49 -50
- data/ext/{gsl/matrix_source.c → gsl_native/matrix_source.h} +280 -302
- data/ext/{gsl → gsl_native}/min.c +43 -74
- data/ext/{gsl → gsl_native}/monte.c +45 -59
- data/ext/{gsl → gsl_native}/multifit.c +138 -147
- data/ext/{gsl → gsl_native}/multimin.c +55 -83
- data/ext/{gsl → gsl_native}/multimin_fsdf.c +15 -15
- data/ext/{gsl → gsl_native}/multiroots.c +61 -64
- data/ext/{gsl → gsl_native}/multiset.c +3 -7
- data/ext/{gsl → gsl_native}/ndlinear.c +320 -321
- data/ext/{gsl → gsl_native}/nmf.c +11 -11
- data/ext/{gsl → gsl_native}/nmf_wrap.c +1 -1
- data/ext/{gsl → gsl_native}/ntuple.c +13 -13
- data/ext/{gsl → gsl_native}/odeiv.c +95 -106
- data/ext/gsl_native/ool.c +879 -0
- data/ext/{gsl → gsl_native}/permutation.c +36 -34
- data/ext/{gsl → gsl_native}/poly.c +2 -5
- data/ext/{gsl → gsl_native}/poly2.c +6 -6
- data/ext/{gsl/poly_source.c → gsl_native/poly_source.h} +232 -275
- data/ext/{gsl → gsl_native}/qrng.c +6 -17
- data/ext/{gsl → gsl_native}/randist.c +218 -243
- data/ext/{gsl → gsl_native}/rational.c +9 -9
- data/ext/{gsl → gsl_native}/rng.c +29 -45
- data/ext/{gsl → gsl_native}/root.c +43 -43
- data/ext/{gsl → gsl_native}/sf.c +163 -197
- data/ext/{gsl → gsl_native}/sf_airy.c +0 -0
- data/ext/{gsl → gsl_native}/sf_bessel.c +6 -6
- data/ext/{gsl → gsl_native}/sf_clausen.c +0 -0
- data/ext/{gsl → gsl_native}/sf_coulomb.c +39 -39
- data/ext/{gsl → gsl_native}/sf_coupling.c +29 -29
- data/ext/{gsl → gsl_native}/sf_dawson.c +0 -0
- data/ext/{gsl → gsl_native}/sf_debye.c +0 -9
- data/ext/{gsl → gsl_native}/sf_dilog.c +0 -0
- data/ext/{gsl → gsl_native}/sf_elementary.c +2 -2
- data/ext/{gsl → gsl_native}/sf_ellint.c +42 -42
- data/ext/{gsl → gsl_native}/sf_elljac.c +2 -2
- data/ext/{gsl → gsl_native}/sf_erfc.c +0 -4
- data/ext/{gsl → gsl_native}/sf_exp.c +2 -2
- data/ext/{gsl → gsl_native}/sf_expint.c +1 -11
- data/ext/{gsl → gsl_native}/sf_fermi_dirac.c +0 -0
- data/ext/{gsl → gsl_native}/sf_gamma.c +1 -5
- data/ext/{gsl → gsl_native}/sf_gegenbauer.c +0 -0
- data/ext/{gsl → gsl_native}/sf_hyperg.c +0 -0
- data/ext/{gsl → gsl_native}/sf_laguerre.c +3 -3
- data/ext/{gsl → gsl_native}/sf_lambert.c +0 -0
- data/ext/{gsl → gsl_native}/sf_legendre.c +0 -0
- data/ext/{gsl → gsl_native}/sf_log.c +3 -3
- data/ext/gsl_native/sf_mathieu.c +235 -0
- data/ext/{gsl → gsl_native}/sf_power.c +0 -0
- data/ext/{gsl → gsl_native}/sf_psi.c +2 -11
- data/ext/{gsl → gsl_native}/sf_synchrotron.c +0 -0
- data/ext/{gsl → gsl_native}/sf_transport.c +0 -0
- data/ext/{gsl → gsl_native}/sf_trigonometric.c +3 -3
- data/ext/{gsl → gsl_native}/sf_zeta.c +0 -4
- data/ext/{gsl → gsl_native}/signal.c +60 -64
- data/ext/{gsl → gsl_native}/siman.c +36 -40
- data/ext/{gsl → gsl_native}/sort.c +3 -4
- data/ext/{gsl → gsl_native}/spline.c +25 -43
- data/ext/{gsl → gsl_native}/stats.c +102 -115
- data/ext/{gsl → gsl_native}/sum.c +32 -32
- data/ext/{gsl → gsl_native}/tamu_anova.c +0 -0
- data/ext/{gsl → gsl_native}/tensor.c +2 -4
- data/ext/{gsl/tensor_source.c → gsl_native/tensor_source.h} +144 -144
- data/ext/{gsl → gsl_native}/vector.c +2 -4
- data/ext/{gsl → gsl_native}/vector_complex.c +165 -171
- data/ext/{gsl → gsl_native}/vector_double.c +167 -174
- data/ext/{gsl → gsl_native}/vector_int.c +23 -25
- data/ext/{gsl/vector_source.c → gsl_native/vector_source.h} +400 -414
- data/ext/{gsl → gsl_native}/wavelet.c +215 -236
- data/lib/gsl.rb +1 -7
- data/lib/gsl/gnuplot.rb +2 -2
- data/lib/gsl/version.rb +1 -3
- data/rb-gsl.gemspec +29 -0
- data/rdoc/blas.rdoc +3 -3
- data/rdoc/bspline.rdoc +7 -7
- data/rdoc/cheb.rdoc +8 -8
- data/rdoc/cholesky_complex.rdoc +1 -1
- data/rdoc/combi.rdoc +9 -9
- data/rdoc/complex.rdoc +11 -11
- data/rdoc/const.rdoc +20 -20
- data/rdoc/dht.rdoc +6 -6
- data/rdoc/diff.rdoc +6 -6
- data/rdoc/ehandling.rdoc +3 -3
- data/rdoc/eigen.rdoc +11 -11
- data/rdoc/fft.rdoc +26 -26
- data/rdoc/fit.rdoc +18 -18
- data/rdoc/graph.rdoc +2 -2
- data/rdoc/hist.rdoc +16 -16
- data/rdoc/hist2d.rdoc +4 -4
- data/rdoc/hist3d.rdoc +3 -3
- data/rdoc/integration.rdoc +16 -16
- data/rdoc/interp.rdoc +11 -11
- data/rdoc/intro.rdoc +3 -3
- data/rdoc/linalg.rdoc +20 -20
- data/rdoc/linalg_complex.rdoc +1 -1
- data/rdoc/math.rdoc +13 -13
- data/rdoc/matrix.rdoc +22 -22
- data/rdoc/min.rdoc +9 -9
- data/rdoc/monte.rdoc +3 -3
- data/rdoc/multimin.rdoc +12 -12
- data/rdoc/multiroot.rdoc +12 -12
- data/rdoc/narray.rdoc +9 -9
- data/rdoc/ndlinear.rdoc +4 -4
- data/rdoc/nonlinearfit.rdoc +17 -17
- data/rdoc/ntuple.rdoc +5 -5
- data/rdoc/odeiv.rdoc +12 -12
- data/rdoc/perm.rdoc +11 -11
- data/rdoc/poly.rdoc +17 -17
- data/rdoc/qrng.rdoc +9 -9
- data/rdoc/randist.rdoc +10 -10
- data/rdoc/ref.rdoc +49 -49
- data/rdoc/rng.rdoc +9 -9
- data/rdoc/roots.rdoc +12 -12
- data/rdoc/sf.rdoc +35 -35
- data/rdoc/siman.rdoc +3 -3
- data/rdoc/sort.rdoc +6 -6
- data/rdoc/start.rdoc +2 -2
- data/rdoc/stats.rdoc +13 -13
- data/rdoc/sum.rdoc +4 -4
- data/rdoc/tensor.rdoc +3 -3
- data/rdoc/tut.rdoc +1 -1
- data/rdoc/use.rdoc +3 -3
- data/rdoc/vector.rdoc +28 -28
- data/rdoc/vector_complex.rdoc +6 -6
- data/rdoc/wavelet.rdoc +8 -8
- data/test/gsl/blas_test.rb +1 -1
- data/test/gsl/index_test.rb +61 -0
- data/test/gsl/matrix_test.rb +21 -0
- data/uncrustify.cfg +1693 -0
- metadata +212 -243
- data/README +0 -28
- data/ext/gsl/bspline.c +0 -130
- data/ext/gsl/const.c +0 -672
- data/ext/gsl/cqp.c +0 -283
- data/ext/gsl/fcmp.c +0 -64
- data/ext/gsl/fresnel.c +0 -312
- data/ext/gsl/jacobi.c +0 -739
- data/ext/gsl/ool.c +0 -879
- data/ext/gsl/oper_complex_source.c +0 -251
- data/ext/gsl/sf_mathieu.c +0 -238
- data/rdoc/index.rdoc +0 -50
@@ -19,23 +19,23 @@ void Init_ndlinear(VALUE module);
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#endif
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#ifndef CHECK_WORKSPACE
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#define CHECK_WORKSPACE(x) if(CLASS_OF(x)!=cgsl_multifit_workspace)\
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#define CHECK_WORKSPACE(x) if(CLASS_OF(x)!=cgsl_multifit_workspace) \
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rb_raise(rb_eTypeError, \
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"wrong argument type %s (GSL::MultiFit::Workspace expected)", \
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rb_class2name(CLASS_OF(x)));
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#endif
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#ifndef CHECK_MULTIFIT_FUNCTION_FDF
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#define CHECK_MULTIFIT_FUNCTION_FDF(x) if(CLASS_OF(x)!=cgsl_multifit_function_fdf)\
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#define CHECK_MULTIFIT_FUNCTION_FDF(x) if(CLASS_OF(x)!=cgsl_multifit_function_fdf) \
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rb_raise(rb_eTypeError, \
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"wrong argument type %s (GSL::MultiFit::Workspace expected)", \
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rb_class2name(CLASS_OF(x)));
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#endif
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static VALUE cgsl_multifit_workspace;
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static VALUE cgsl_multifit_function_fdf;
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enum MultiFit_Solver_Type{
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enum MultiFit_Solver_Type {
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GSL_MULTIFIT_FDFSOLVER_LMSDER,
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GSL_MULTIFIT_FDFSOLVER_LMDER,
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};
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@@ -56,7 +56,7 @@ static VALUE rb_gsl_multifit_linear(int argc, VALUE *argv, VALUE obj)
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double chisq;
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int status, flag = 0;
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VALUE vc, vcov;
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if (argc != 2 && argc != 3)
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if (argc != 2 && argc != 3)
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rb_raise(rb_eArgError, "wrong number of arguments (%d for 2 or 3)", argc);
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Data_Get_Matrix(argv[0], x);
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double chisq;
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int status, flag = 0;
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VALUE vc, vcov;
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if (argc != 3 && argc != 4)
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if (argc != 3 && argc != 4)
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rb_raise(rb_eArgError, "wrong number of arguments (%d for 3 or 4)", argc);
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Data_Get_Matrix(argv[0], x);
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Data_Get_Vector(argv[1], w);
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@@ -139,7 +139,7 @@ static void calc_X_legendre(gsl_matrix *X, gsl_vector *v, size_t order)
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}
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static VALUE rb_gsl_multifit_XXXfit(int argc, VALUE *argv, VALUE obj,
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void (*fn)(gsl_matrix*, gsl_vector*,size_t))
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{
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gsl_multifit_linear_workspace *space = NULL;
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gsl_matrix *X = NULL, *cov = NULL;
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@@ -149,7 +149,7 @@ static VALUE rb_gsl_multifit_XXXfit(int argc, VALUE *argv, VALUE obj,
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double chisq;
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int status, flag = 0, flagw = 0;
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VALUE vc, verr;
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if (argc != 3 && argc != 4 && argc != 5)
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if (argc != 3 && argc != 4 && argc != 5)
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rb_raise(rb_eArgError, "wrong number of arguments (%d for 3 or 4)", argc);
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x = &xx.vector;
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w = &ww.vector;
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@@ -181,9 +181,8 @@ static VALUE rb_gsl_multifit_XXXfit(int argc, VALUE *argv, VALUE obj,
|
|
181
181
|
err = gsl_vector_alloc(order + 1);
|
182
182
|
vc = Data_Wrap_Struct(cgsl_poly, 0, gsl_vector_free, c);
|
183
183
|
verr = Data_Wrap_Struct(cgsl_poly, 0, gsl_vector_free, err);
|
184
|
-
for (i = 0; i < err->size; i++)
|
184
|
+
for (i = 0; i < err->size; i++)
|
185
185
|
gsl_vector_set(err, i, sqrt(chisq/((double)x->size-err->size)*gsl_matrix_get(cov, i, i)));
|
186
|
-
|
187
186
|
gsl_matrix_free(X);
|
188
187
|
gsl_matrix_free(cov);
|
189
188
|
return rb_ary_new3(4, vc, verr, rb_float_new(chisq), INT2FIX(status));
|
@@ -213,31 +212,31 @@ static VALUE rb_gsl_multifit_fdfsolver_new(int argc, VALUE *argv, VALUE klass)
|
|
213
212
|
case T_STRING:
|
214
213
|
strcpy(name, STR2CSTR(argv[0]));
|
215
214
|
if (str_tail_grep(name, "lmsder") == 0) {
|
216
|
-
|
215
|
+
T = gsl_multifit_fdfsolver_lmsder;
|
217
216
|
} else if (str_tail_grep(name, "lmder") == 0) {
|
218
|
-
|
217
|
+
T = gsl_multifit_fdfsolver_lmder;
|
219
218
|
} else {
|
220
|
-
|
221
|
-
|
219
|
+
rb_raise(rb_eTypeError, "unknown solver type %s (lmsder of lmder)",
|
220
|
+
name);
|
222
221
|
}
|
223
222
|
break;
|
224
223
|
case T_FIXNUM:
|
225
224
|
switch (FIX2INT(argv[0])) {
|
226
225
|
case GSL_MULTIFIT_FDFSOLVER_LMSDER:
|
227
|
-
|
228
|
-
|
226
|
+
T = gsl_multifit_fdfsolver_lmsder;
|
227
|
+
break;
|
229
228
|
case GSL_MULTIFIT_FDFSOLVER_LMDER:
|
230
|
-
|
231
|
-
|
229
|
+
T = gsl_multifit_fdfsolver_lmder;
|
230
|
+
break;
|
232
231
|
default:
|
233
|
-
|
234
|
-
|
235
|
-
|
232
|
+
rb_raise(rb_eTypeError,
|
233
|
+
"unknown solver type (GSL::MultiFit::FdfSolver::LMSDER or LMDER expected)");
|
234
|
+
break;
|
236
235
|
}
|
237
236
|
break;
|
238
237
|
default:
|
239
238
|
rb_raise(rb_eTypeError, "wrong argument type %s (Fixnum or String)",
|
240
|
-
|
239
|
+
rb_class2name(CLASS_OF(argv[0])));
|
241
240
|
break;
|
242
241
|
}
|
243
242
|
CHECK_FIXNUM(argv[1]); CHECK_FIXNUM(argv[2]);
|
@@ -301,8 +300,8 @@ static VALUE rb_gsl_multifit_fdfsolver_print_state(VALUE obj, VALUE i)
|
|
301
300
|
CHECK_FIXNUM(i);
|
302
301
|
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
303
302
|
printf("iter: %d x = %15.8f %15.8f %15.8f |f(x)| = %g\n",
|
304
|
-
|
305
|
-
|
303
|
+
(int) FIX2INT(i), gsl_vector_get(solver->x, 0), gsl_vector_get(solver->x, 1),
|
304
|
+
gsl_vector_get(solver->x, 2), gsl_blas_dnrm2(solver->f));
|
306
305
|
return Qtrue;
|
307
306
|
}
|
308
307
|
|
@@ -449,15 +448,15 @@ static VALUE rb_gsl_multifit_gradient(int argc, VALUE *argv, VALUE obj)
|
|
449
448
|
switch (argc) {
|
450
449
|
case 2:
|
451
450
|
Data_Get_Matrix(argv[0], J);
|
452
|
-
Data_Get_Vector(argv[1], f);
|
451
|
+
Data_Get_Vector(argv[1], f);
|
453
452
|
g = gsl_vector_alloc(f->size);
|
454
453
|
/*status =*/ gsl_multifit_gradient(J, f, g);
|
455
454
|
return Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, g);
|
456
|
-
break;
|
455
|
+
break;
|
457
456
|
case 3:
|
458
457
|
Data_Get_Matrix(argv[0], J);
|
459
|
-
Data_Get_Vector(argv[1], f);
|
460
|
-
Data_Get_Vector(argv[2], g);
|
458
|
+
Data_Get_Vector(argv[1], f);
|
459
|
+
Data_Get_Vector(argv[2], g);
|
461
460
|
return INT2FIX(gsl_multifit_gradient(J, f, g));
|
462
461
|
break;
|
463
462
|
default:
|
@@ -496,15 +495,15 @@ static VALUE rb_gsl_multifit_covar(int argc, VALUE *argv, VALUE obj)
|
|
496
495
|
|
497
496
|
static void rb_gsl_multifit_define_const(VALUE klass)
|
498
497
|
{
|
499
|
-
rb_define_const(klass, "LMSDER",
|
500
|
-
|
501
|
-
rb_define_const(klass, "LMDER",
|
502
|
-
|
498
|
+
rb_define_const(klass, "LMSDER",
|
499
|
+
INT2FIX(GSL_MULTIFIT_FDFSOLVER_LMSDER));
|
500
|
+
rb_define_const(klass, "LMDER",
|
501
|
+
INT2FIX(GSL_MULTIFIT_FDFSOLVER_LMDER));
|
503
502
|
|
504
|
-
rb_define_const(klass, "Lmsder",
|
505
|
-
|
506
|
-
rb_define_const(klass, "Lmder",
|
507
|
-
|
503
|
+
rb_define_const(klass, "Lmsder",
|
504
|
+
INT2FIX(GSL_MULTIFIT_FDFSOLVER_LMSDER));
|
505
|
+
rb_define_const(klass, "Lmder",
|
506
|
+
INT2FIX(GSL_MULTIFIT_FDFSOLVER_LMDER));
|
508
507
|
}
|
509
508
|
|
510
509
|
static void gsl_multifit_function_fdf_free(gsl_multifit_function_fdf *f);
|
@@ -520,11 +519,11 @@ static void gsl_multifit_function_fdf_mark(gsl_multifit_function_fdf *F)
|
|
520
519
|
}
|
521
520
|
|
522
521
|
static int gsl_multifit_function_fdf_f(const gsl_vector *x, void *params,
|
523
|
-
|
522
|
+
gsl_vector *f);
|
524
523
|
static int gsl_multifit_function_fdf_df(const gsl_vector *x, void *params,
|
525
|
-
|
524
|
+
gsl_matrix *J);
|
526
525
|
static int gsl_multifit_function_fdf_fdf(const gsl_vector *x, void *params,
|
527
|
-
|
526
|
+
gsl_vector *f, gsl_matrix *J);
|
528
527
|
|
529
528
|
static VALUE rb_gsl_multifit_function_fdf_set_procs(int argc, VALUE *argv, VALUE obj);
|
530
529
|
|
@@ -551,7 +550,7 @@ static VALUE rb_gsl_multifit_function_fdf_new(int argc, VALUE *argv, VALUE klass
|
|
551
550
|
break;
|
552
551
|
}
|
553
552
|
return obj;
|
554
|
-
}
|
553
|
+
}
|
555
554
|
|
556
555
|
static VALUE rb_gsl_multifit_function_fdf_set_procs(int argc, VALUE *argv, VALUE obj)
|
557
556
|
{
|
@@ -568,8 +567,8 @@ static VALUE rb_gsl_multifit_function_fdf_set_procs(int argc, VALUE *argv, VALUE
|
|
568
567
|
rb_ary_store(ary, 0, argv[0]);
|
569
568
|
rb_ary_store(ary, 1, argv[1]);
|
570
569
|
switch (argc) {
|
571
|
-
|
572
|
-
|
570
|
+
case 2:
|
571
|
+
break;
|
573
572
|
case 3:
|
574
573
|
if (TYPE(argv[2]) == T_FIXNUM) {
|
575
574
|
func->p = FIX2INT(argv[2]);
|
@@ -621,7 +620,7 @@ static VALUE rb_gsl_multifit_function_fdf_set_data(int argc, VALUE *argv, VALUE
|
|
621
620
|
}
|
622
621
|
|
623
622
|
static int gsl_multifit_function_fdf_f(const gsl_vector *x, void *params,
|
624
|
-
|
623
|
+
gsl_vector *f)
|
625
624
|
{
|
626
625
|
VALUE vt_y_sigma, vt, vy, vsigma, vf, vx, proc, ary;
|
627
626
|
ary = (VALUE) params;
|
@@ -643,13 +642,13 @@ static int gsl_multifit_function_fdf_f(const gsl_vector *x, void *params,
|
|
643
642
|
break;
|
644
643
|
default:
|
645
644
|
rb_raise(rb_eArgError, "bad argument");
|
646
|
-
break;
|
645
|
+
break;
|
647
646
|
}
|
648
647
|
return GSL_SUCCESS;
|
649
648
|
}
|
650
649
|
|
651
650
|
static int gsl_multifit_function_fdf_df(const gsl_vector *x, void *params,
|
652
|
-
|
651
|
+
gsl_matrix *J)
|
653
652
|
{
|
654
653
|
VALUE vt_y_sigma, vt, vy, vsigma, vJ, vx, proc, ary;
|
655
654
|
ary = (VALUE) params;
|
@@ -671,13 +670,13 @@ static int gsl_multifit_function_fdf_df(const gsl_vector *x, void *params,
|
|
671
670
|
break;
|
672
671
|
default:
|
673
672
|
rb_raise(rb_eArgError, "bad argument");
|
674
|
-
break;
|
673
|
+
break;
|
675
674
|
}
|
676
675
|
return GSL_SUCCESS;
|
677
676
|
}
|
678
677
|
|
679
678
|
static int gsl_multifit_function_fdf_fdf(const gsl_vector *x, void *params,
|
680
|
-
|
679
|
+
gsl_vector *f, gsl_matrix *J)
|
681
680
|
{
|
682
681
|
VALUE vt_y_sigma, vt, vy, vsigma, vf, vJ, vx, proc_f, proc_df, proc_fdf;
|
683
682
|
VALUE ary;
|
@@ -696,7 +695,7 @@ static int gsl_multifit_function_fdf_fdf(const gsl_vector *x, void *params,
|
|
696
695
|
if (NIL_P(proc_fdf)) {
|
697
696
|
rb_funcall(proc_f, RBGSL_ID_call, 4, vx, vt, vy, vf);
|
698
697
|
rb_funcall(proc_df, RBGSL_ID_call, 4, vx, vt, vy, vJ);
|
699
|
-
} else
|
698
|
+
} else
|
700
699
|
rb_funcall(proc_fdf, RBGSL_ID_call, 5, vx, vt, vy, vf, vJ);
|
701
700
|
break;
|
702
701
|
case 3:
|
@@ -706,12 +705,12 @@ static int gsl_multifit_function_fdf_fdf(const gsl_vector *x, void *params,
|
|
706
705
|
if (NIL_P(proc_fdf)) {
|
707
706
|
rb_funcall(proc_f, RBGSL_ID_call, 5, vx, vt, vy, vsigma, vf);
|
708
707
|
rb_funcall(proc_df, RBGSL_ID_call, 5, vx, vt, vy, vsigma, vJ);
|
709
|
-
} else
|
708
|
+
} else
|
710
709
|
rb_funcall(proc_fdf, RBGSL_ID_call, 6, vx, vt, vy, vsigma, vf, vJ);
|
711
710
|
break;
|
712
711
|
default:
|
713
712
|
rb_raise(rb_eArgError, "bad argument");
|
714
|
-
break;
|
713
|
+
break;
|
715
714
|
}
|
716
715
|
return GSL_SUCCESS;
|
717
716
|
}
|
@@ -750,7 +749,7 @@ struct fitting_xydata {
|
|
750
749
|
gsl_vector *x, *y, *w;
|
751
750
|
};
|
752
751
|
|
753
|
-
/* Gaussian fit
|
752
|
+
/* Gaussian fit
|
754
753
|
y = y0 + A exp(-(x-x0/sigma)^2)
|
755
754
|
v[0] = y0
|
756
755
|
v[1] = A
|
@@ -807,14 +806,14 @@ static int Gaussian_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
807
806
|
}
|
808
807
|
|
809
808
|
static int Gaussian_fdf(const gsl_vector *v, void *data,
|
810
|
-
|
809
|
+
gsl_vector *f, gsl_matrix *J)
|
811
810
|
{
|
812
811
|
Gaussian_f(v, data, f);
|
813
812
|
Gaussian_df(v, data, J);
|
814
813
|
return GSL_SUCCESS;
|
815
814
|
}
|
816
815
|
|
817
|
-
/* 2 Gaussian fit
|
816
|
+
/* 2 Gaussian fit
|
818
817
|
y = y0 + A1 exp(-(x-x01/sigma1)^2) + A2 exp(-(x-x02/sigma2)^2)
|
819
818
|
v[0] = y0
|
820
819
|
v[1] = A1
|
@@ -885,14 +884,14 @@ static int Gaussian_2peaks_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
885
884
|
}
|
886
885
|
|
887
886
|
static int Gaussian_2peaks_fdf(const gsl_vector *v, void *data,
|
888
|
-
|
887
|
+
gsl_vector *f, gsl_matrix *J)
|
889
888
|
{
|
890
889
|
Gaussian_2peaks_f(v, data, f);
|
891
890
|
Gaussian_2peaks_df(v, data, J);
|
892
891
|
return GSL_SUCCESS;
|
893
892
|
}
|
894
893
|
|
895
|
-
/* Exponential fit
|
894
|
+
/* Exponential fit
|
896
895
|
y = y0 + A exp(-bx)
|
897
896
|
v[0] = y0
|
898
897
|
v[1] = A
|
@@ -938,14 +937,14 @@ static int Exponential_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
938
937
|
else wi = 1.0;
|
939
938
|
yy = exp(-xi*b);
|
940
939
|
gsl_matrix_set(J, i, 0, 1.0*wi);
|
941
|
-
gsl_matrix_set(J, i, 1, yy*wi);
|
940
|
+
gsl_matrix_set(J, i, 1, yy*wi);
|
942
941
|
gsl_matrix_set(J, i, 2, -A*yy*xi*wi);
|
943
942
|
}
|
944
943
|
return GSL_SUCCESS;
|
945
944
|
}
|
946
945
|
|
947
946
|
static int Exponential_fdf(const gsl_vector *v, void *data,
|
948
|
-
|
947
|
+
gsl_vector *f, gsl_matrix *J)
|
949
948
|
{
|
950
949
|
Exponential_f(v, data, f);
|
951
950
|
Exponential_df(v, data, J);
|
@@ -953,7 +952,7 @@ static int Exponential_fdf(const gsl_vector *v, void *data,
|
|
953
952
|
}
|
954
953
|
|
955
954
|
|
956
|
-
/* Double Exponential fit
|
955
|
+
/* Double Exponential fit
|
957
956
|
y = y0 + A1 exp(-b1 x) + A2 exp(-b2 x)
|
958
957
|
v[0] = y0
|
959
958
|
v[1] = A1
|
@@ -1006,23 +1005,23 @@ static int DblExponential_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
1006
1005
|
yy1 = exp(-xi*b1);
|
1007
1006
|
yy2 = exp(-xi*b2);
|
1008
1007
|
gsl_matrix_set(J, i, 0, 1.0*wi);
|
1009
|
-
gsl_matrix_set(J, i, 1, yy1*wi);
|
1008
|
+
gsl_matrix_set(J, i, 1, yy1*wi);
|
1010
1009
|
gsl_matrix_set(J, i, 2, -A1*yy1*xi*wi);
|
1011
|
-
gsl_matrix_set(J, i, 3, yy2*wi);
|
1010
|
+
gsl_matrix_set(J, i, 3, yy2*wi);
|
1012
1011
|
gsl_matrix_set(J, i, 4, -A2*yy2*xi*wi);
|
1013
1012
|
}
|
1014
1013
|
return GSL_SUCCESS;
|
1015
1014
|
}
|
1016
1015
|
|
1017
1016
|
static int DblExponential_fdf(const gsl_vector *v, void *data,
|
1018
|
-
|
1017
|
+
gsl_vector *f, gsl_matrix *J)
|
1019
1018
|
{
|
1020
1019
|
DblExponential_f(v, data, f);
|
1021
1020
|
DblExponential_df(v, data, J);
|
1022
1021
|
return GSL_SUCCESS;
|
1023
1022
|
}
|
1024
1023
|
|
1025
|
-
/* Lorentzian fit
|
1024
|
+
/* Lorentzian fit
|
1026
1025
|
y = y0 + A/((x-x0)^2 + B)
|
1027
1026
|
v[0] = y0
|
1028
1027
|
v[1] = A
|
@@ -1071,7 +1070,7 @@ static int Lorentzian_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
1071
1070
|
else wi = 1.0;
|
1072
1071
|
yy = gsl_pow_2(xi-x0)+B;
|
1073
1072
|
gsl_matrix_set(J, i, 0, 1.0*wi);
|
1074
|
-
gsl_matrix_set(J, i, 1, 1.0/yy*wi);
|
1073
|
+
gsl_matrix_set(J, i, 1, 1.0/yy*wi);
|
1075
1074
|
gsl_matrix_set(J, i, 2, 2.0*A*(xi-x0)/yy/yy*wi);
|
1076
1075
|
gsl_matrix_set(J, i, 3, -A/yy/yy*wi);
|
1077
1076
|
}
|
@@ -1079,7 +1078,7 @@ static int Lorentzian_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
1079
1078
|
}
|
1080
1079
|
|
1081
1080
|
static int Lorentzian_fdf(const gsl_vector *v, void *data,
|
1082
|
-
|
1081
|
+
gsl_vector *f, gsl_matrix *J)
|
1083
1082
|
{
|
1084
1083
|
Lorentzian_f(v, data, f);
|
1085
1084
|
Lorentzian_df(v, data, J);
|
@@ -1136,7 +1135,7 @@ static int Sin_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
1136
1135
|
ys = sin(fc*xi + phi);
|
1137
1136
|
yc = cos(fc*xi + phi);
|
1138
1137
|
gsl_matrix_set(J, i, 0, 1.0*wi);
|
1139
|
-
gsl_matrix_set(J, i, 1, ys*wi);
|
1138
|
+
gsl_matrix_set(J, i, 1, ys*wi);
|
1140
1139
|
gsl_matrix_set(J, i, 2, A*yc*xi*wi);
|
1141
1140
|
gsl_matrix_set(J, i, 3, A*yc*wi);
|
1142
1141
|
}
|
@@ -1144,7 +1143,7 @@ static int Sin_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
1144
1143
|
}
|
1145
1144
|
|
1146
1145
|
static int Sin_fdf(const gsl_vector *v, void *data,
|
1147
|
-
|
1146
|
+
gsl_vector *f, gsl_matrix *J)
|
1148
1147
|
{
|
1149
1148
|
Sin_f(v, data, f);
|
1150
1149
|
Sin_df(v, data, J);
|
@@ -1202,7 +1201,7 @@ static int Hill_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
1202
1201
|
a = pow(xhalf/xi, r);
|
1203
1202
|
yy = (1.0 + a);
|
1204
1203
|
gsl_matrix_set(J, i, 0, (1.0 - 1.0/yy)*wi);
|
1205
|
-
gsl_matrix_set(J, i, 1, 1.0/yy*wi);
|
1204
|
+
gsl_matrix_set(J, i, 1, 1.0/yy*wi);
|
1206
1205
|
gsl_matrix_set(J, i, 2, -(m-y0)*r/xhalf*a/yy/yy*wi);
|
1207
1206
|
gsl_matrix_set(J, i, 3, -(m-y0)/yy/yy*a*log(xhalf/xi)*wi);
|
1208
1207
|
}
|
@@ -1210,7 +1209,7 @@ static int Hill_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
1210
1209
|
}
|
1211
1210
|
|
1212
1211
|
static int Hill_fdf(const gsl_vector *v, void *data,
|
1213
|
-
|
1212
|
+
gsl_vector *f, gsl_matrix *J)
|
1214
1213
|
{
|
1215
1214
|
Hill_f(v, data, f);
|
1216
1215
|
Hill_df(v, data, J);
|
@@ -1267,7 +1266,7 @@ static int Sigmoid_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
1267
1266
|
a = exp((x0 - xi)/r);
|
1268
1267
|
yy = 1.0 + a;
|
1269
1268
|
gsl_matrix_set(J, i, 0, wi);
|
1270
|
-
gsl_matrix_set(J, i, 1, 1.0/yy*wi);
|
1269
|
+
gsl_matrix_set(J, i, 1, 1.0/yy*wi);
|
1271
1270
|
gsl_matrix_set(J, i, 2, -m*a/r/yy/yy*wi);
|
1272
1271
|
gsl_matrix_set(J, i, 3, m*a*(x0-xi)/r/r/yy/yy*wi);
|
1273
1272
|
}
|
@@ -1275,7 +1274,7 @@ static int Sigmoid_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
1275
1274
|
}
|
1276
1275
|
|
1277
1276
|
static int Sigmoid_fdf(const gsl_vector *v, void *data,
|
1278
|
-
|
1277
|
+
gsl_vector *f, gsl_matrix *J)
|
1279
1278
|
{
|
1280
1279
|
Sigmoid_f(v, data, f);
|
1281
1280
|
Sigmoid_df(v, data, J);
|
@@ -1329,15 +1328,15 @@ static int Power_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
1329
1328
|
else wi = 1.0;
|
1330
1329
|
a = pow(xi, r);
|
1331
1330
|
gsl_matrix_set(J, i, 0, wi);
|
1332
|
-
gsl_matrix_set(J, i, 1, a*wi);
|
1331
|
+
gsl_matrix_set(J, i, 1, a*wi);
|
1333
1332
|
gsl_matrix_set(J, i, 2, A*a*log(xi)*wi);
|
1334
|
-
|
1333
|
+
|
1335
1334
|
}
|
1336
1335
|
return GSL_SUCCESS;
|
1337
1336
|
}
|
1338
1337
|
|
1339
1338
|
static int Power_fdf(const gsl_vector *v, void *data,
|
1340
|
-
|
1339
|
+
gsl_vector *f, gsl_matrix *J)
|
1341
1340
|
{
|
1342
1341
|
Power_f(v, data, f);
|
1343
1342
|
Power_df(v, data, J);
|
@@ -1395,7 +1394,7 @@ static int Lognormal_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
1395
1394
|
a = log(xi/x0)/width;
|
1396
1395
|
b = exp(-a*a);
|
1397
1396
|
gsl_matrix_set(J, i, 0, wi);
|
1398
|
-
gsl_matrix_set(J, i, 1, b*wi);
|
1397
|
+
gsl_matrix_set(J, i, 1, b*wi);
|
1399
1398
|
gsl_matrix_set(J, i, 2, 2.0*A*b*a*a*a/width/x0*wi);
|
1400
1399
|
gsl_matrix_set(J, i, 3, 2.0*A*b*a*a*a*a/width*wi);
|
1401
1400
|
}
|
@@ -1403,14 +1402,14 @@ static int Lognormal_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
1403
1402
|
}
|
1404
1403
|
|
1405
1404
|
static int Lognormal_fdf(const gsl_vector *v, void *data,
|
1406
|
-
|
1405
|
+
gsl_vector *f, gsl_matrix *J)
|
1407
1406
|
{
|
1408
1407
|
Lognormal_f(v, data, f);
|
1409
1408
|
Lognormal_df(v, data, J);
|
1410
1409
|
return GSL_SUCCESS;
|
1411
1410
|
}
|
1412
1411
|
|
1413
|
-
/* Rayleigh fit
|
1412
|
+
/* Rayleigh fit
|
1414
1413
|
y = A exp(-x*x/2/var)
|
1415
1414
|
v[0] = A
|
1416
1415
|
v[1] = var = sigma^2
|
@@ -1460,7 +1459,7 @@ static int Rayleigh_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
|
1460
1459
|
}
|
1461
1460
|
|
1462
1461
|
static int Rayleigh_fdf(const gsl_vector *v, void *data,
|
1463
|
-
|
1462
|
+
gsl_vector *f, gsl_matrix *J)
|
1464
1463
|
{
|
1465
1464
|
Rayleigh_f(v, data, f);
|
1466
1465
|
Rayleigh_df(v, data, J);
|
@@ -1507,10 +1506,10 @@ static void set_fittype(gsl_multifit_function_fdf *f, const char *fittype, size_
|
|
1507
1506
|
*v = gsl_vector_alloc(*p);
|
1508
1507
|
gsl_vector_set(*v, 0, 0); /* y0 = 0 */
|
1509
1508
|
gsl_vector_set(*v, 1, 1); /* A = 1 */
|
1510
|
-
gsl_vector_set(*v, 2, 1);
|
1509
|
+
gsl_vector_set(*v, 2, 1);
|
1511
1510
|
*flag = 1;
|
1512
1511
|
}
|
1513
|
-
|
1512
|
+
} else if (str_head_grep(fittype, "rayleigh") == 0) {
|
1514
1513
|
f->f = Rayleigh_f;
|
1515
1514
|
f->df = Rayleigh_df;
|
1516
1515
|
f->fdf = Rayleigh_fdf;
|
@@ -1530,9 +1529,9 @@ static void set_fittype(gsl_multifit_function_fdf *f, const char *fittype, size_
|
|
1530
1529
|
*v = gsl_vector_alloc(*p);
|
1531
1530
|
gsl_vector_set(*v, 0, 0); /* y0 = 0 */
|
1532
1531
|
gsl_vector_set(*v, 1, 1); /* A = 1 */
|
1533
|
-
gsl_vector_set(*v, 2, 1);
|
1532
|
+
gsl_vector_set(*v, 2, 1);
|
1534
1533
|
gsl_vector_set(*v, 3, 1); /* A = 1 */
|
1535
|
-
gsl_vector_set(*v, 4, 1);
|
1534
|
+
gsl_vector_set(*v, 4, 1);
|
1536
1535
|
*flag = 1;
|
1537
1536
|
}
|
1538
1537
|
} else if (str_head_grep(fittype, "lor") == 0) {
|
@@ -1542,10 +1541,10 @@ static void set_fittype(gsl_multifit_function_fdf *f, const char *fittype, size_
|
|
1542
1541
|
*p = 4;
|
1543
1542
|
if (*v == NULL) {
|
1544
1543
|
*v = gsl_vector_alloc(*p);
|
1545
|
-
gsl_vector_set(*v, 0, 0);
|
1544
|
+
gsl_vector_set(*v, 0, 0);
|
1546
1545
|
gsl_vector_set(*v, 1, 1);
|
1547
|
-
gsl_vector_set(*v, 2, 0);
|
1548
|
-
gsl_vector_set(*v, 3, 1);
|
1546
|
+
gsl_vector_set(*v, 2, 0);
|
1547
|
+
gsl_vector_set(*v, 3, 1);
|
1549
1548
|
*flag = 1;
|
1550
1549
|
}
|
1551
1550
|
} else if (str_head_grep(fittype, "sin") == 0) {
|
@@ -1555,10 +1554,10 @@ static void set_fittype(gsl_multifit_function_fdf *f, const char *fittype, size_
|
|
1555
1554
|
*p = 4;
|
1556
1555
|
if (*v == NULL) {
|
1557
1556
|
*v = gsl_vector_alloc(*p);
|
1558
|
-
gsl_vector_set(*v, 0, 0);
|
1557
|
+
gsl_vector_set(*v, 0, 0);
|
1559
1558
|
gsl_vector_set(*v, 1, 1);
|
1560
|
-
gsl_vector_set(*v, 2, 1);
|
1561
|
-
gsl_vector_set(*v, 3, 0);
|
1559
|
+
gsl_vector_set(*v, 2, 1);
|
1560
|
+
gsl_vector_set(*v, 3, 0);
|
1562
1561
|
*flag = 1;
|
1563
1562
|
}
|
1564
1563
|
} else if (str_head_grep(fittype, "hill") == 0) {
|
@@ -1568,10 +1567,10 @@ static void set_fittype(gsl_multifit_function_fdf *f, const char *fittype, size_
|
|
1568
1567
|
*p = 4;
|
1569
1568
|
if (*v == NULL) {
|
1570
1569
|
*v = gsl_vector_alloc(*p);
|
1571
|
-
gsl_vector_set(*v, 0, 0);
|
1570
|
+
gsl_vector_set(*v, 0, 0);
|
1572
1571
|
gsl_vector_set(*v, 1, 1);
|
1573
|
-
gsl_vector_set(*v, 2, 1);
|
1574
|
-
gsl_vector_set(*v, 3, 1);
|
1572
|
+
gsl_vector_set(*v, 2, 1);
|
1573
|
+
gsl_vector_set(*v, 3, 1);
|
1575
1574
|
*flag = 1;
|
1576
1575
|
}
|
1577
1576
|
} else if (str_head_grep(fittype, "sigmoid") == 0 || str_head_grep(fittype, "fermi") == 0) {
|
@@ -1581,10 +1580,10 @@ static void set_fittype(gsl_multifit_function_fdf *f, const char *fittype, size_
|
|
1581
1580
|
*p = 4;
|
1582
1581
|
if (*v == NULL) {
|
1583
1582
|
*v = gsl_vector_alloc(*p);
|
1584
|
-
gsl_vector_set(*v, 0, 0);
|
1583
|
+
gsl_vector_set(*v, 0, 0);
|
1585
1584
|
gsl_vector_set(*v, 1, 1);
|
1586
|
-
gsl_vector_set(*v, 2, 0);
|
1587
|
-
gsl_vector_set(*v, 3, 1);
|
1585
|
+
gsl_vector_set(*v, 2, 0);
|
1586
|
+
gsl_vector_set(*v, 3, 1);
|
1588
1587
|
*flag = 1;
|
1589
1588
|
}
|
1590
1589
|
} else if (str_head_grep(fittype, "power") == 0) {
|
@@ -1594,9 +1593,9 @@ static void set_fittype(gsl_multifit_function_fdf *f, const char *fittype, size_
|
|
1594
1593
|
*p = 3;
|
1595
1594
|
if (*v == NULL) {
|
1596
1595
|
*v = gsl_vector_alloc(*p);
|
1597
|
-
gsl_vector_set(*v, 0, 0);
|
1596
|
+
gsl_vector_set(*v, 0, 0);
|
1598
1597
|
gsl_vector_set(*v, 1, 1);
|
1599
|
-
gsl_vector_set(*v, 2, -1);
|
1598
|
+
gsl_vector_set(*v, 2, -1);
|
1600
1599
|
*flag = 1;
|
1601
1600
|
}
|
1602
1601
|
} else if (str_head_grep(fittype, "lognormal") == 0) {
|
@@ -1606,16 +1605,15 @@ static void set_fittype(gsl_multifit_function_fdf *f, const char *fittype, size_
|
|
1606
1605
|
*p = 4;
|
1607
1606
|
if (*v == NULL) {
|
1608
1607
|
*v = gsl_vector_alloc(*p);
|
1609
|
-
gsl_vector_set(*v, 0, 0);
|
1608
|
+
gsl_vector_set(*v, 0, 0);
|
1610
1609
|
gsl_vector_set(*v, 1, 1);
|
1611
|
-
gsl_vector_set(*v, 2, 1);
|
1612
|
-
gsl_vector_set(*v, 3, 1);
|
1610
|
+
gsl_vector_set(*v, 2, 1);
|
1611
|
+
gsl_vector_set(*v, 3, 1);
|
1613
1612
|
*flag = 1;
|
1614
1613
|
}
|
1615
1614
|
} else {
|
1616
1615
|
rb_raise(rb_eRuntimeError, "Unknown fit type (gaussian expected)");
|
1617
1616
|
}
|
1618
|
-
|
1619
1617
|
}
|
1620
1618
|
|
1621
1619
|
/* Singleton method */
|
@@ -1708,12 +1706,11 @@ static VALUE rb_gsl_multifit_fit(int argc, VALUE *argv, VALUE klass)
|
|
1708
1706
|
if (flag == 1) gsl_vector_free(v);
|
1709
1707
|
gsl_multifit_fdfsolver_free(solver);
|
1710
1708
|
return rb_ary_new3(4,
|
1711
|
-
|
1712
|
-
|
1713
|
-
|
1709
|
+
Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, vout),
|
1710
|
+
Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, verr),
|
1711
|
+
rb_float_new(chi2), INT2FIX(dof));
|
1714
1712
|
}
|
1715
1713
|
|
1716
|
-
#ifdef GSL_1_8_LATER
|
1717
1714
|
static VALUE rb_gsl_multifit_linear_est(VALUE module, VALUE xx, VALUE cc, VALUE ccov)
|
1718
1715
|
{
|
1719
1716
|
gsl_vector *x, *c;
|
@@ -1726,8 +1723,7 @@ static VALUE rb_gsl_multifit_linear_est(VALUE module, VALUE xx, VALUE cc, VALUE
|
|
1726
1723
|
gsl_multifit_linear_est(x, c, cov, &y, &y_err);
|
1727
1724
|
return rb_ary_new3(2, rb_float_new(y), rb_float_new(y_err));
|
1728
1725
|
}
|
1729
|
-
|
1730
|
-
#ifdef GSL_1_11_LATER
|
1726
|
+
|
1731
1727
|
static VALUE rb_gsl_multifit_linear_residuals(int argc, VALUE argv[], VALUE module)
|
1732
1728
|
{
|
1733
1729
|
gsl_vector *y, *c, *r;
|
@@ -1755,8 +1751,6 @@ static VALUE rb_gsl_multifit_linear_residuals(int argc, VALUE argv[], VALUE modu
|
|
1755
1751
|
return ret;
|
1756
1752
|
}
|
1757
1753
|
|
1758
|
-
#endif
|
1759
|
-
|
1760
1754
|
void Init_gsl_multifit(VALUE module)
|
1761
1755
|
{
|
1762
1756
|
VALUE mgsl_multifit;
|
@@ -1765,34 +1759,34 @@ void Init_gsl_multifit(VALUE module)
|
|
1765
1759
|
|
1766
1760
|
mgsl_multifit = rb_define_module_under(module, "MultiFit");
|
1767
1761
|
|
1768
|
-
cgsl_multifit_workspace = rb_define_class_under(mgsl_multifit, "Workspace",
|
1769
|
-
|
1770
|
-
rb_define_singleton_method(cgsl_multifit_workspace, "new",
|
1771
|
-
|
1772
|
-
rb_define_singleton_method(cgsl_multifit_workspace, "alloc",
|
1773
|
-
|
1774
|
-
rb_define_singleton_method(mgsl_multifit, "alloc",
|
1775
|
-
|
1762
|
+
cgsl_multifit_workspace = rb_define_class_under(mgsl_multifit, "Workspace",
|
1763
|
+
cGSL_Object);
|
1764
|
+
rb_define_singleton_method(cgsl_multifit_workspace, "new",
|
1765
|
+
rb_gsl_multifit_workspace_new, 2);
|
1766
|
+
rb_define_singleton_method(cgsl_multifit_workspace, "alloc",
|
1767
|
+
rb_gsl_multifit_workspace_new, 2);
|
1768
|
+
rb_define_singleton_method(mgsl_multifit, "alloc",
|
1769
|
+
rb_gsl_multifit_workspace_new, 2);
|
1776
1770
|
rb_define_module_function(mgsl_multifit, "linear", rb_gsl_multifit_linear, -1);
|
1777
1771
|
rb_define_module_function(mgsl_multifit, "wlinear", rb_gsl_multifit_wlinear, -1);
|
1778
1772
|
|
1779
1773
|
cgsl_multifit_solver = rb_define_class_under(mgsl_multifit, "Solver", cGSL_Object);
|
1780
|
-
cgsl_multifit_fdfsolver = rb_define_class_under(mgsl_multifit, "FdfSolver",
|
1781
|
-
|
1774
|
+
cgsl_multifit_fdfsolver = rb_define_class_under(mgsl_multifit, "FdfSolver",
|
1775
|
+
cgsl_multifit_solver);
|
1782
1776
|
cgsl_multifit_function_fdf = rb_define_class_under(mgsl_multifit, "Function_fdf",
|
1783
|
-
|
1777
|
+
cGSL_Object);
|
1784
1778
|
|
1785
1779
|
/*****/
|
1786
1780
|
|
1787
|
-
rb_define_singleton_method(cgsl_multifit_fdfsolver, "new",
|
1788
|
-
|
1789
|
-
rb_define_singleton_method(cgsl_multifit_fdfsolver, "alloc",
|
1790
|
-
|
1781
|
+
rb_define_singleton_method(cgsl_multifit_fdfsolver, "new",
|
1782
|
+
rb_gsl_multifit_fdfsolver_new, -1);
|
1783
|
+
rb_define_singleton_method(cgsl_multifit_fdfsolver, "alloc",
|
1784
|
+
rb_gsl_multifit_fdfsolver_new, -1);
|
1791
1785
|
|
1792
|
-
rb_define_singleton_method(cgsl_multifit_function_fdf, "new",
|
1793
|
-
|
1794
|
-
rb_define_singleton_method(cgsl_multifit_function_fdf, "alloc",
|
1795
|
-
|
1786
|
+
rb_define_singleton_method(cgsl_multifit_function_fdf, "new",
|
1787
|
+
rb_gsl_multifit_function_fdf_new, -1);
|
1788
|
+
rb_define_singleton_method(cgsl_multifit_function_fdf, "alloc",
|
1789
|
+
rb_gsl_multifit_function_fdf_new, -1);
|
1796
1790
|
|
1797
1791
|
/*****/
|
1798
1792
|
|
@@ -1827,35 +1821,32 @@ void Init_gsl_multifit(VALUE module)
|
|
1827
1821
|
|
1828
1822
|
rb_gsl_multifit_define_const(cgsl_multifit_fdfsolver);
|
1829
1823
|
|
1830
|
-
rb_define_method(cgsl_multifit_function_fdf, "set_procs",
|
1831
|
-
|
1832
|
-
rb_define_method(cgsl_multifit_function_fdf, "set_data",
|
1833
|
-
|
1834
|
-
rb_define_method(cgsl_multifit_function_fdf, "params",
|
1835
|
-
|
1824
|
+
rb_define_method(cgsl_multifit_function_fdf, "set_procs",
|
1825
|
+
rb_gsl_multifit_function_fdf_set_procs, -1);
|
1826
|
+
rb_define_method(cgsl_multifit_function_fdf, "set_data",
|
1827
|
+
rb_gsl_multifit_function_fdf_set_data, -1);
|
1828
|
+
rb_define_method(cgsl_multifit_function_fdf, "params",
|
1829
|
+
rb_gsl_multifit_function_fdf_params, 0);
|
1836
1830
|
rb_define_alias(cgsl_multifit_function_fdf, "param", "params");
|
1837
1831
|
|
1838
|
-
rb_define_method(cgsl_multifit_function_fdf, "n",
|
1839
|
-
|
1840
|
-
rb_define_method(cgsl_multifit_function_fdf, "set_n",
|
1841
|
-
|
1832
|
+
rb_define_method(cgsl_multifit_function_fdf, "n",
|
1833
|
+
rb_gsl_multifit_function_fdf_n, 0);
|
1834
|
+
rb_define_method(cgsl_multifit_function_fdf, "set_n",
|
1835
|
+
rb_gsl_multifit_function_fdf_set_n, 1);
|
1842
1836
|
rb_define_alias(cgsl_multifit_function_fdf, "n=", "set_n");
|
1843
|
-
rb_define_method(cgsl_multifit_function_fdf, "p",
|
1844
|
-
|
1837
|
+
rb_define_method(cgsl_multifit_function_fdf, "p",
|
1838
|
+
rb_gsl_multifit_function_fdf_p, 0);
|
1845
1839
|
rb_define_alias(cgsl_multifit_function_fdf, "np", "p");
|
1846
1840
|
|
1847
1841
|
/*****/
|
1848
1842
|
rb_define_singleton_method(cgsl_multifit_fdfsolver, "fit", rb_gsl_multifit_fit, -1);
|
1849
1843
|
|
1850
1844
|
/***/
|
1851
|
-
#ifdef GSL_1_8_LATER
|
1852
1845
|
rb_define_module_function(mgsl_multifit, "linear_est", rb_gsl_multifit_linear_est, 3);
|
1853
1846
|
rb_define_module_function(module, "multifit_linear_est", rb_gsl_multifit_linear_est, 3);
|
1854
|
-
|
1855
|
-
#ifdef GSL_1_11_LATER
|
1847
|
+
|
1856
1848
|
rb_define_module_function(mgsl_multifit, "linear_residuals", rb_gsl_multifit_linear_residuals, -1);
|
1857
1849
|
rb_define_module_function(module, "multifit_linear_residuals", rb_gsl_multifit_linear_residuals, -1);
|
1858
|
-
#endif
|
1859
1850
|
|
1860
1851
|
#ifdef HAVE_NDLINEAR_GSL_MULTIFIT_NDLINEAR_H
|
1861
1852
|
Init_ndlinear(mgsl_multifit);
|