rb-gsl 1.16.0.4 → 1.16.0.5
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- checksums.yaml +4 -4
- data/.gitignore +12 -0
- data/.travis.yml +24 -0
- data/AUTHORS +6 -0
- data/COPYING +341 -339
- data/ChangeLog +608 -587
- data/Gemfile +4 -0
- data/README.md +77 -0
- data/Rakefile +14 -33
- data/THANKS +1 -1
- data/examples/blas/blas.rb +1 -1
- data/examples/bspline.rb +3 -3
- data/examples/complex/functions.rb +4 -4
- data/examples/complex/mul.rb +1 -1
- data/examples/const/physconst.rb +4 -4
- data/examples/const/travel.rb +4 -4
- data/examples/eigen/nonsymmv.rb +1 -1
- data/examples/eigen/qhoscillator.rb +3 -3
- data/examples/fft/radix2.rb +1 -1
- data/examples/fft/real-halfcomplex.rb +3 -3
- data/examples/fft/real-halfcomplex2.rb +3 -3
- data/examples/fit/expfit.rb +1 -1
- data/examples/fit/multifit.rb +1 -1
- data/examples/fit/ndlinear.rb +44 -44
- data/examples/fit/nonlinearfit.rb +1 -1
- data/examples/fit/wlinear.rb +3 -3
- data/examples/function/function.rb +1 -1
- data/examples/function/min.rb +1 -1
- data/examples/function/synchrotron.rb +2 -2
- data/examples/gallery/koch.rb +1 -1
- data/examples/histogram/cauchy.rb +2 -2
- data/examples/histogram/exponential.rb +1 -1
- data/examples/histogram/histo3d.rb +1 -1
- data/examples/histogram/histogram-pdf.rb +2 -2
- data/examples/histogram/xexp.rb +1 -1
- data/examples/integration/ahmed.rb +2 -2
- data/examples/integration/cosmology.rb +7 -7
- data/examples/integration/friedmann.rb +4 -4
- data/examples/integration/qng.rb +1 -1
- data/examples/interp/demo.rb +2 -2
- data/examples/linalg/LQ_solve.rb +1 -1
- data/examples/linalg/LU.rb +1 -1
- data/examples/linalg/LU2.rb +1 -1
- data/examples/linalg/LU_narray.rb +1 -1
- data/examples/linalg/PTLQ.rb +1 -1
- data/examples/linalg/QRPT.rb +1 -1
- data/examples/linalg/chol.rb +1 -1
- data/examples/linalg/chol_narray.rb +1 -1
- data/examples/linalg/complex.rb +1 -1
- data/examples/math/elementary.rb +1 -1
- data/examples/math/functions.rb +1 -1
- data/examples/math/inf_nan.rb +1 -1
- data/examples/math/minmax.rb +1 -1
- data/examples/math/power.rb +1 -1
- data/examples/math/test.rb +1 -1
- data/examples/min.rb +1 -1
- data/examples/multimin/bundle.rb +1 -1
- data/examples/multimin/cqp.rb +17 -17
- data/examples/multiroot/fsolver3.rb +1 -1
- data/examples/odeiv/binarysystem.rb +12 -12
- data/examples/odeiv/demo.rb +3 -3
- data/examples/odeiv/frei1.rb +7 -7
- data/examples/odeiv/frei2.rb +4 -4
- data/examples/odeiv/oscillator.rb +1 -1
- data/examples/odeiv/sedov.rb +3 -3
- data/examples/odeiv/whitedwarf.rb +11 -11
- data/examples/permutation/ex1.rb +2 -2
- data/examples/permutation/permutation.rb +1 -1
- data/examples/poly/demo.rb +1 -1
- data/examples/random/diffusion.rb +1 -1
- data/examples/random/generator.rb +2 -2
- data/examples/random/randomwalk.rb +3 -3
- data/examples/random/rng.rb +1 -1
- data/examples/roots/bisection.rb +1 -1
- data/examples/roots/brent.rb +1 -1
- data/examples/roots/demo.rb +1 -1
- data/examples/roots/newton.rb +2 -2
- data/examples/roots/recombination.gp +0 -1
- data/examples/sf/hyperg.rb +1 -1
- data/examples/sf/sphbessel.rb +1 -1
- data/examples/sort/sort.rb +1 -1
- data/examples/tamu_anova.rb +4 -4
- data/examples/vector/add.rb +1 -1
- data/examples/vector/decimate.rb +1 -1
- data/examples/vector/gnuplot.rb +8 -8
- data/examples/vector/vector.rb +2 -2
- data/examples/wavelet/wavelet1.rb +1 -1
- data/ext/{gsl → gsl_native}/alf.c +9 -9
- data/ext/{gsl → gsl_native}/array.c +64 -151
- data/ext/{gsl → gsl_native}/array_complex.c +61 -63
- data/ext/{gsl → gsl_native}/blas.c +0 -0
- data/ext/{gsl → gsl_native}/blas1.c +32 -32
- data/ext/{gsl → gsl_native}/blas2.c +54 -58
- data/ext/{gsl → gsl_native}/blas3.c +54 -54
- data/ext/{gsl → gsl_native}/block.c +3 -6
- data/ext/{gsl/block_source.c → gsl_native/block_source.h} +109 -111
- data/ext/gsl_native/bspline.c +122 -0
- data/ext/{gsl → gsl_native}/bundle.c +0 -0
- data/ext/{gsl → gsl_native}/cdf.c +76 -88
- data/ext/{gsl → gsl_native}/cheb.c +74 -85
- data/ext/{gsl → gsl_native}/combination.c +9 -16
- data/ext/{gsl → gsl_native}/common.c +7 -37
- data/ext/{gsl → gsl_native}/complex.c +113 -115
- data/ext/gsl_native/const.c +331 -0
- data/ext/{gsl → gsl_native}/const_additional.c +12 -33
- data/ext/gsl_native/cqp.c +283 -0
- data/ext/{gsl → gsl_native}/deriv.c +22 -30
- data/ext/{gsl → gsl_native}/dht.c +20 -28
- data/ext/{gsl → gsl_native}/diff.c +23 -25
- data/ext/{gsl → gsl_native}/dirac.c +44 -45
- data/ext/{gsl → gsl_native}/eigen.c +1031 -1082
- data/ext/{gsl → gsl_native}/error.c +13 -13
- data/ext/{gsl → gsl_native}/extconf.rb +5 -13
- data/ext/{gsl → gsl_native}/fft.c +192 -198
- data/ext/{gsl → gsl_native}/fit.c +16 -16
- data/ext/gsl_native/fresnel.c +312 -0
- data/ext/{gsl → gsl_native}/function.c +29 -35
- data/ext/{gsl → gsl_native}/geometry.c +15 -15
- data/ext/{gsl → gsl_native}/graph.c +37 -87
- data/ext/{gsl → gsl_native}/gsl.c +10 -23
- data/ext/{gsl → gsl_native}/gsl_narray.c +15 -24
- data/ext/{gsl → gsl_native}/histogram.c +123 -150
- data/ext/{gsl → gsl_native}/histogram2d.c +71 -96
- data/ext/{gsl → gsl_native}/histogram3d.c +72 -72
- data/ext/{gsl → gsl_native}/histogram3d_source.c +195 -196
- data/ext/{gsl → gsl_native}/histogram_find.c +31 -33
- data/ext/{gsl → gsl_native}/histogram_oper.c +43 -52
- data/ext/{gsl → gsl_native}/ieee.c +7 -15
- data/ext/{gsl → gsl_native}/include/rb_gsl.h +0 -7
- data/ext/{gsl → gsl_native}/include/rb_gsl_array.h +15 -25
- data/ext/{gsl → gsl_native}/include/rb_gsl_cheb.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_common.h +44 -52
- data/ext/{gsl → gsl_native}/include/rb_gsl_complex.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_const.h +0 -5
- data/ext/{gsl → gsl_native}/include/rb_gsl_dirac.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_eigen.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_fft.h +0 -3
- data/ext/{gsl → gsl_native}/include/rb_gsl_fit.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_function.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_graph.h +2 -2
- data/ext/{gsl → gsl_native}/include/rb_gsl_histogram.h +8 -8
- data/ext/{gsl → gsl_native}/include/rb_gsl_histogram3d.h +50 -50
- data/ext/{gsl → gsl_native}/include/rb_gsl_integration.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_interp.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_linalg.h +0 -1
- data/ext/{gsl → gsl_native}/include/rb_gsl_math.h +0 -4
- data/ext/{gsl → gsl_native}/include/rb_gsl_odeiv.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_poly.h +3 -3
- data/ext/{gsl → gsl_native}/include/rb_gsl_rational.h +1 -1
- data/ext/{gsl → gsl_native}/include/rb_gsl_rng.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_root.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_sf.h +39 -43
- data/ext/{gsl → gsl_native}/include/rb_gsl_statistics.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_tensor.h +0 -0
- data/ext/{gsl → gsl_native}/include/rb_gsl_with_narray.h +0 -0
- data/ext/{gsl → gsl_native}/include/templates_off.h +0 -0
- data/ext/{gsl → gsl_native}/include/templates_on.h +1 -1
- data/ext/{gsl → gsl_native}/integration.c +160 -183
- data/ext/{gsl → gsl_native}/interp.c +23 -31
- data/ext/gsl_native/jacobi.c +733 -0
- data/ext/{gsl → gsl_native}/linalg.c +448 -576
- data/ext/{gsl → gsl_native}/linalg_complex.c +84 -98
- data/ext/{gsl → gsl_native}/math.c +45 -63
- data/ext/{gsl → gsl_native}/matrix.c +4 -6
- data/ext/{gsl → gsl_native}/matrix_complex.c +111 -114
- data/ext/{gsl → gsl_native}/matrix_double.c +74 -77
- data/ext/{gsl → gsl_native}/matrix_int.c +49 -50
- data/ext/{gsl/matrix_source.c → gsl_native/matrix_source.h} +280 -302
- data/ext/{gsl → gsl_native}/min.c +43 -74
- data/ext/{gsl → gsl_native}/monte.c +45 -59
- data/ext/{gsl → gsl_native}/multifit.c +138 -147
- data/ext/{gsl → gsl_native}/multimin.c +55 -83
- data/ext/{gsl → gsl_native}/multimin_fsdf.c +15 -15
- data/ext/{gsl → gsl_native}/multiroots.c +61 -64
- data/ext/{gsl → gsl_native}/multiset.c +3 -7
- data/ext/{gsl → gsl_native}/ndlinear.c +320 -321
- data/ext/{gsl → gsl_native}/nmf.c +11 -11
- data/ext/{gsl → gsl_native}/nmf_wrap.c +1 -1
- data/ext/{gsl → gsl_native}/ntuple.c +13 -13
- data/ext/{gsl → gsl_native}/odeiv.c +95 -106
- data/ext/gsl_native/ool.c +879 -0
- data/ext/{gsl → gsl_native}/permutation.c +36 -34
- data/ext/{gsl → gsl_native}/poly.c +2 -5
- data/ext/{gsl → gsl_native}/poly2.c +6 -6
- data/ext/{gsl/poly_source.c → gsl_native/poly_source.h} +232 -275
- data/ext/{gsl → gsl_native}/qrng.c +6 -17
- data/ext/{gsl → gsl_native}/randist.c +218 -243
- data/ext/{gsl → gsl_native}/rational.c +9 -9
- data/ext/{gsl → gsl_native}/rng.c +29 -45
- data/ext/{gsl → gsl_native}/root.c +43 -43
- data/ext/{gsl → gsl_native}/sf.c +163 -197
- data/ext/{gsl → gsl_native}/sf_airy.c +0 -0
- data/ext/{gsl → gsl_native}/sf_bessel.c +6 -6
- data/ext/{gsl → gsl_native}/sf_clausen.c +0 -0
- data/ext/{gsl → gsl_native}/sf_coulomb.c +39 -39
- data/ext/{gsl → gsl_native}/sf_coupling.c +29 -29
- data/ext/{gsl → gsl_native}/sf_dawson.c +0 -0
- data/ext/{gsl → gsl_native}/sf_debye.c +0 -9
- data/ext/{gsl → gsl_native}/sf_dilog.c +0 -0
- data/ext/{gsl → gsl_native}/sf_elementary.c +2 -2
- data/ext/{gsl → gsl_native}/sf_ellint.c +42 -42
- data/ext/{gsl → gsl_native}/sf_elljac.c +2 -2
- data/ext/{gsl → gsl_native}/sf_erfc.c +0 -4
- data/ext/{gsl → gsl_native}/sf_exp.c +2 -2
- data/ext/{gsl → gsl_native}/sf_expint.c +1 -11
- data/ext/{gsl → gsl_native}/sf_fermi_dirac.c +0 -0
- data/ext/{gsl → gsl_native}/sf_gamma.c +1 -5
- data/ext/{gsl → gsl_native}/sf_gegenbauer.c +0 -0
- data/ext/{gsl → gsl_native}/sf_hyperg.c +0 -0
- data/ext/{gsl → gsl_native}/sf_laguerre.c +3 -3
- data/ext/{gsl → gsl_native}/sf_lambert.c +0 -0
- data/ext/{gsl → gsl_native}/sf_legendre.c +0 -0
- data/ext/{gsl → gsl_native}/sf_log.c +3 -3
- data/ext/gsl_native/sf_mathieu.c +235 -0
- data/ext/{gsl → gsl_native}/sf_power.c +0 -0
- data/ext/{gsl → gsl_native}/sf_psi.c +2 -11
- data/ext/{gsl → gsl_native}/sf_synchrotron.c +0 -0
- data/ext/{gsl → gsl_native}/sf_transport.c +0 -0
- data/ext/{gsl → gsl_native}/sf_trigonometric.c +3 -3
- data/ext/{gsl → gsl_native}/sf_zeta.c +0 -4
- data/ext/{gsl → gsl_native}/signal.c +60 -64
- data/ext/{gsl → gsl_native}/siman.c +36 -40
- data/ext/{gsl → gsl_native}/sort.c +3 -4
- data/ext/{gsl → gsl_native}/spline.c +25 -43
- data/ext/{gsl → gsl_native}/stats.c +102 -115
- data/ext/{gsl → gsl_native}/sum.c +32 -32
- data/ext/{gsl → gsl_native}/tamu_anova.c +0 -0
- data/ext/{gsl → gsl_native}/tensor.c +2 -4
- data/ext/{gsl/tensor_source.c → gsl_native/tensor_source.h} +144 -144
- data/ext/{gsl → gsl_native}/vector.c +2 -4
- data/ext/{gsl → gsl_native}/vector_complex.c +165 -171
- data/ext/{gsl → gsl_native}/vector_double.c +167 -174
- data/ext/{gsl → gsl_native}/vector_int.c +23 -25
- data/ext/{gsl/vector_source.c → gsl_native/vector_source.h} +400 -414
- data/ext/{gsl → gsl_native}/wavelet.c +215 -236
- data/lib/gsl.rb +1 -7
- data/lib/gsl/gnuplot.rb +2 -2
- data/lib/gsl/version.rb +1 -3
- data/rb-gsl.gemspec +29 -0
- data/rdoc/blas.rdoc +3 -3
- data/rdoc/bspline.rdoc +7 -7
- data/rdoc/cheb.rdoc +8 -8
- data/rdoc/cholesky_complex.rdoc +1 -1
- data/rdoc/combi.rdoc +9 -9
- data/rdoc/complex.rdoc +11 -11
- data/rdoc/const.rdoc +20 -20
- data/rdoc/dht.rdoc +6 -6
- data/rdoc/diff.rdoc +6 -6
- data/rdoc/ehandling.rdoc +3 -3
- data/rdoc/eigen.rdoc +11 -11
- data/rdoc/fft.rdoc +26 -26
- data/rdoc/fit.rdoc +18 -18
- data/rdoc/graph.rdoc +2 -2
- data/rdoc/hist.rdoc +16 -16
- data/rdoc/hist2d.rdoc +4 -4
- data/rdoc/hist3d.rdoc +3 -3
- data/rdoc/integration.rdoc +16 -16
- data/rdoc/interp.rdoc +11 -11
- data/rdoc/intro.rdoc +3 -3
- data/rdoc/linalg.rdoc +20 -20
- data/rdoc/linalg_complex.rdoc +1 -1
- data/rdoc/math.rdoc +13 -13
- data/rdoc/matrix.rdoc +22 -22
- data/rdoc/min.rdoc +9 -9
- data/rdoc/monte.rdoc +3 -3
- data/rdoc/multimin.rdoc +12 -12
- data/rdoc/multiroot.rdoc +12 -12
- data/rdoc/narray.rdoc +9 -9
- data/rdoc/ndlinear.rdoc +4 -4
- data/rdoc/nonlinearfit.rdoc +17 -17
- data/rdoc/ntuple.rdoc +5 -5
- data/rdoc/odeiv.rdoc +12 -12
- data/rdoc/perm.rdoc +11 -11
- data/rdoc/poly.rdoc +17 -17
- data/rdoc/qrng.rdoc +9 -9
- data/rdoc/randist.rdoc +10 -10
- data/rdoc/ref.rdoc +49 -49
- data/rdoc/rng.rdoc +9 -9
- data/rdoc/roots.rdoc +12 -12
- data/rdoc/sf.rdoc +35 -35
- data/rdoc/siman.rdoc +3 -3
- data/rdoc/sort.rdoc +6 -6
- data/rdoc/start.rdoc +2 -2
- data/rdoc/stats.rdoc +13 -13
- data/rdoc/sum.rdoc +4 -4
- data/rdoc/tensor.rdoc +3 -3
- data/rdoc/tut.rdoc +1 -1
- data/rdoc/use.rdoc +3 -3
- data/rdoc/vector.rdoc +28 -28
- data/rdoc/vector_complex.rdoc +6 -6
- data/rdoc/wavelet.rdoc +8 -8
- data/test/gsl/blas_test.rb +1 -1
- data/test/gsl/index_test.rb +61 -0
- data/test/gsl/matrix_test.rb +21 -0
- data/uncrustify.cfg +1693 -0
- metadata +212 -243
- data/README +0 -28
- data/ext/gsl/bspline.c +0 -130
- data/ext/gsl/const.c +0 -672
- data/ext/gsl/cqp.c +0 -283
- data/ext/gsl/fcmp.c +0 -64
- data/ext/gsl/fresnel.c +0 -312
- data/ext/gsl/jacobi.c +0 -739
- data/ext/gsl/ool.c +0 -879
- data/ext/gsl/oper_complex_source.c +0 -251
- data/ext/gsl/sf_mathieu.c +0 -238
- data/rdoc/index.rdoc +0 -50
@@ -98,16 +98,14 @@ void Init_gsl_native()
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Init_gsl_eigen(mgsl);
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Init_gsl_fft(mgsl);
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Init_gsl_signal(mgsl);
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Init_gsl_function(mgsl);
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Init_gsl_integration(mgsl);
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Init_gsl_rng(mgsl);
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Init_gsl_qrng(mgsl);
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Init_gsl_ran(mgsl);
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#ifdef GSL_1_4_LATER
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Init_gsl_cdf(mgsl);
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#endif
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Init_gsl_stats(mgsl);
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Init_gsl_histogram(mgsl);
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@@ -121,9 +119,7 @@ void Init_gsl_native()
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Init_gsl_interp(mgsl);
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Init_gsl_spline(mgsl);
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Init_gsl_diff(mgsl);
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#ifdef GSL_1_4_9_LATER
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Init_gsl_deriv(mgsl);
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#endif
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Init_gsl_cheb(mgsl);
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Init_gsl_sum(mgsl);
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#endif
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#ifdef HAVE_OOL_OOL_VERSION_H
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Init_ool(mgsl);
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#endif
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#ifdef HAVE_JACOBI_H
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Init_jacobi(mgsl);
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#endif
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#ifdef HAVE_GSL_GSL_CQP_H
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Init_cqp(mgsl);
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#endif
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Init_bspline(mgsl);
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#endif
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Init_fresnel(mgsl);
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Init_bspline(mgsl);
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#ifdef HAVE_ALF_ALF_H
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Init_alf(mgsl);
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#endif
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Init_geometry(mgsl);
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Init_multiset(mgsl);
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#endif
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Init_multiset(mgsl);
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rb_gsl_define_methods(mgsl);
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}
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@@ -209,10 +201,8 @@ static void rb_gsl_define_const(VALUE module)
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rb_define_const(module, "PREC_DOUBLE", INT2FIX(GSL_PREC_DOUBLE));
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rb_define_const(module, "PREC_SINGLE", INT2FIX(GSL_PREC_SINGLE));
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rb_define_const(module, "PREC_APPROX", INT2FIX(GSL_PREC_APPROX));
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#ifdef GSL_VERSION
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rb_define_const(module, "VERSION", rb_str_new2(GSL_VERSION));
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rb_define_const(module, "GSL_VERSION", rb_str_new2(GSL_VERSION));
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#endif
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rb_define_const(module, "DBL_EPSILON", rb_float_new(GSL_DBL_EPSILON));
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rb_define_const(module, "FLT_EPSILON", rb_float_new(GSL_FLT_EPSILON));
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@@ -240,11 +230,8 @@ static void rb_gsl_define_const(VALUE module)
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rb_define_const(module, "ROOT6_DBL_MIN", rb_float_new(GSL_ROOT6_DBL_MIN));
|
241
231
|
rb_define_const(module, "LOG_DBL_MIN", rb_float_new(GSL_LOG_DBL_MIN));
|
242
232
|
|
243
|
-
#ifdef GSL_1_14_LATER
|
244
233
|
rb_define_const(module, "MAJOR_VERSION", INT2FIX(GSL_MAJOR_VERSION));
|
245
234
|
rb_define_const(module, "MINOR_VERSION", INT2FIX(GSL_MINOR_VERSION));
|
246
|
-
#endif
|
247
|
-
|
248
235
|
}
|
249
236
|
|
250
237
|
static VALUE rb_gsl_have_tensor(VALUE module)
|
@@ -7,7 +7,6 @@
|
|
7
7
|
|
8
8
|
#ifdef HAVE_NARRAY_H
|
9
9
|
#include "include/rb_gsl_array.h"
|
10
|
-
#include "narray.h"
|
11
10
|
#include "include/rb_gsl_with_narray.h"
|
12
11
|
|
13
12
|
static VALUE rb_gsl_na_to_gsl_matrix_method(VALUE nna);
|
@@ -30,7 +29,7 @@ static VALUE rb_gsl_vector_to_narray(VALUE obj, VALUE klass)
|
|
30
29
|
memcpy(NA_PTR_TYPE(nary,double*), v->data, shape[0]*sizeof(double));
|
31
30
|
} else {
|
32
31
|
int i;
|
33
|
-
for(i=0; i < (int) v->size; i++) {
|
32
|
+
for(i = 0; i < (int) v->size; i++) {
|
34
33
|
(NA_PTR_TYPE(nary,double*))[i] = gsl_vector_get(v, i);
|
35
34
|
}
|
36
35
|
}
|
@@ -49,7 +48,7 @@ static VALUE rb_gsl_vector_complex_to_narray(VALUE obj, VALUE klass)
|
|
49
48
|
memcpy(NA_PTR_TYPE(nary,double*), v->data, shape[0]*2*sizeof(double));
|
50
49
|
} else {
|
51
50
|
int i;
|
52
|
-
for(i=0; i < (int) (2*v->size); i++) {
|
51
|
+
for(i = 0; i < (int) (2*v->size); i++) {
|
53
52
|
(NA_PTR_TYPE(nary,gsl_complex*))[i] = gsl_vector_complex_get(v, i);
|
54
53
|
}
|
55
54
|
}
|
@@ -66,8 +65,7 @@ static VALUE rb_gsl_vector_to_na(VALUE obj)
|
|
66
65
|
na = rb_gsl_vector_complex_to_narray(obj, cNArray);
|
67
66
|
else
|
68
67
|
rb_raise(rb_eRuntimeError, "unexpected type '%s'",
|
69
|
-
|
70
|
-
|
68
|
+
rb_obj_classname(obj));
|
71
69
|
return na;
|
72
70
|
}
|
73
71
|
|
@@ -141,7 +139,7 @@ static VALUE rb_gsl_vector_to_narray_ref(VALUE obj, VALUE klass)
|
|
141
139
|
na->ptr = (char *) vc->data;
|
142
140
|
} else {
|
143
141
|
rb_raise(rb_eRuntimeError, "cannot convert %s to NArray reference object",
|
144
|
-
|
142
|
+
rb_obj_classname(obj));
|
145
143
|
}
|
146
144
|
nary = Data_Wrap_Struct(klass, 0, rb_gsl_na_view_free, na);
|
147
145
|
return nary;
|
@@ -169,7 +167,7 @@ static VALUE rb_gsl_vector_int_to_narray(VALUE obj, VALUE klass)
|
|
169
167
|
memcpy(NA_PTR_TYPE(nary,int*), v->data, shape[0]*sizeof(int));
|
170
168
|
} else {
|
171
169
|
int i;
|
172
|
-
for(i=0; i < (int) v->size; i++) {
|
170
|
+
for(i = 0; i < (int) v->size; i++) {
|
173
171
|
(NA_PTR_TYPE(nary,int*))[i] = gsl_vector_int_get(v, i);
|
174
172
|
}
|
175
173
|
}
|
@@ -229,11 +227,10 @@ static VALUE rb_gsl_na_to_gsl_vector_method(VALUE na)
|
|
229
227
|
|
230
228
|
if(NA_TYPE(na) == NA_SCOMPLEX || NA_TYPE(na) == NA_DCOMPLEX)
|
231
229
|
v = Data_Wrap_Struct(cgsl_vector_complex, 0, gsl_vector_complex_free,
|
232
|
-
|
230
|
+
na_to_gv_complex(na));
|
233
231
|
else
|
234
232
|
v = Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free,
|
235
|
-
|
236
|
-
|
233
|
+
na_to_gv(na));
|
237
234
|
return v;
|
238
235
|
}
|
239
236
|
|
@@ -243,11 +240,10 @@ VALUE rb_gsl_na_to_gsl_vector_view_method(VALUE na)
|
|
243
240
|
|
244
241
|
if(NA_TYPE(na) == NA_SCOMPLEX || NA_TYPE(na) == NA_DCOMPLEX)
|
245
242
|
v = Data_Wrap_Struct(cgsl_vector_complex_view, 0, gsl_vector_complex_view_free,
|
246
|
-
|
243
|
+
na_to_gv_complex_view(na));
|
247
244
|
else
|
248
245
|
v = Data_Wrap_Struct(cgsl_vector_view, 0, gsl_vector_view_free,
|
249
|
-
|
250
|
-
|
246
|
+
na_to_gv_view(na));
|
251
247
|
return v;
|
252
248
|
}
|
253
249
|
|
@@ -282,7 +278,6 @@ gsl_vector_view* na_to_gv_view(VALUE na)
|
|
282
278
|
// Raise exception if na's type is not NA_DFLOAT.
|
283
279
|
if(NA_TYPE(na) != NA_DFLOAT)
|
284
280
|
rb_raise(rb_eTypeError, "GSL::Vector::View requires NArray be DFLOAT");
|
285
|
-
|
286
281
|
v = gsl_vector_view_alloc();
|
287
282
|
v->vector.data = NA_PTR_TYPE(na,double*);
|
288
283
|
v->vector.size = NA_TOTAL(na);
|
@@ -310,7 +305,6 @@ gsl_vector_complex_view* na_to_gv_complex_view(VALUE na)
|
|
310
305
|
// Raise exception if na's type is not NA_DCOMPLEX
|
311
306
|
if(NA_TYPE(na) != NA_DCOMPLEX)
|
312
307
|
rb_raise(rb_eTypeError, "GSL::Vector::Complex::View requires NArray be DCOMPLEX");
|
313
|
-
|
314
308
|
v = gsl_vector_complex_view_alloc();
|
315
309
|
v->vector.data = NA_PTR_TYPE(na,double*);
|
316
310
|
v->vector.size = NA_TOTAL(na);
|
@@ -357,7 +351,7 @@ static VALUE rb_gsl_matrix_to_narray(VALUE obj, VALUE klass)
|
|
357
351
|
shape[1] = m->size1;
|
358
352
|
nary = na_make_object(NA_DFLOAT, 2, shape, klass);
|
359
353
|
for (i = 0; (int) i < shape[1]; i++) {
|
360
|
-
memcpy(NA_PTR_TYPE(nary,double*)+(i*shape[0]), m->data+(i*m->tda),
|
354
|
+
memcpy(NA_PTR_TYPE(nary,double*)+(i*shape[0]), m->data+(i*m->tda),
|
361
355
|
shape[0]*sizeof(double));
|
362
356
|
}
|
363
357
|
return nary;
|
@@ -384,7 +378,7 @@ static VALUE rb_gsl_matrix_int_to_narray(VALUE obj, VALUE klass)
|
|
384
378
|
shape[1] = m->size1;
|
385
379
|
nary = na_make_object(NA_LINT, 2, shape, klass);
|
386
380
|
for (i = 0; (int) i < shape[1]; i++) {
|
387
|
-
memcpy(NA_PTR_TYPE(nary,int*)+(i*shape[0]), m->data+(i*m->tda),
|
381
|
+
memcpy(NA_PTR_TYPE(nary,int*)+(i*shape[0]), m->data+(i*m->tda),
|
388
382
|
shape[0]*sizeof(int));
|
389
383
|
}
|
390
384
|
return nary;
|
@@ -538,7 +532,7 @@ gsl_matrix_view* na_to_gm_view(VALUE nna)
|
|
538
532
|
m->matrix.data = NA_PTR_TYPE(ary2,double*);
|
539
533
|
m->matrix.size1 = na->shape[1];
|
540
534
|
m->matrix.size2 = na->shape[0];
|
541
|
-
m->matrix.tda = m->matrix.size2;
|
535
|
+
m->matrix.tda = m->matrix.size2;
|
542
536
|
m->matrix.owner = 0;
|
543
537
|
return m;
|
544
538
|
}
|
@@ -570,13 +564,11 @@ gsl_matrix_int_view* na_to_gm_int_view(VALUE nna)
|
|
570
564
|
m->matrix.data = NA_PTR_TYPE(ary2,int*);
|
571
565
|
m->matrix.size1 = na->shape[1];
|
572
566
|
m->matrix.size2 = na->shape[0];
|
573
|
-
m->matrix.tda = m->matrix.size2;
|
567
|
+
m->matrix.tda = m->matrix.size2;
|
574
568
|
m->matrix.owner = 0;
|
575
569
|
return m;
|
576
570
|
}
|
577
571
|
|
578
|
-
#ifdef HAVE_NARRAY_H
|
579
|
-
#include "narray.h"
|
580
572
|
#include <gsl/gsl_histogram.h>
|
581
573
|
EXTERN VALUE cgsl_histogram;
|
582
574
|
static VALUE rb_gsl_narray_histogram(int argc, VALUE *argv, VALUE obj)
|
@@ -593,7 +585,7 @@ static VALUE rb_gsl_narray_histogram(int argc, VALUE *argv, VALUE obj)
|
|
593
585
|
v.vector.size = stride;
|
594
586
|
switch (argc) {
|
595
587
|
case 1:
|
596
|
-
if (rb_obj_is_kind_of(argv[0], rb_cRange))
|
588
|
+
if (rb_obj_is_kind_of(argv[0], rb_cRange))
|
597
589
|
argv[0] = rb_gsl_range2ary(argv[0]);
|
598
590
|
switch (TYPE(argv[0])) {
|
599
591
|
case T_FIXNUM:
|
@@ -652,7 +644,6 @@ static VALUE rb_gsl_narray_histogram(int argc, VALUE *argv, VALUE obj)
|
|
652
644
|
gsl_histogram_increment(h, ptr[i*stride]);
|
653
645
|
return Data_Wrap_Struct(cgsl_histogram, 0, gsl_histogram_free, h);
|
654
646
|
}
|
655
|
-
#endif
|
656
647
|
|
657
648
|
/*void rb_gsl_with_narray_define_methods()*/
|
658
649
|
void Init_gsl_narray(VALUE module)
|
@@ -765,7 +756,7 @@ void Init_gsl_narray(VALUE module)
|
|
765
756
|
rb_define_method(cNArray, "to_gslm", rb_gsl_na_to_gsl_matrix_method, 0);
|
766
757
|
rb_define_alias(cNArray, "to_gm", "to_gslm");
|
767
758
|
rb_define_method(cNArray, "to_gslm_view", rb_gsl_na_to_gsl_matrix_view_method, 0);
|
768
|
-
rb_define_alias(cNArray, "to_gm_view", "to_gslm_view");
|
759
|
+
rb_define_alias(cNArray, "to_gm_view", "to_gslm_view");
|
769
760
|
|
770
761
|
/*****/
|
771
762
|
// TODO Complex matrix
|
@@ -21,7 +21,6 @@ VALUE cgsl_histogram_bin;
|
|
21
21
|
static VALUE cgsl_histogram_integ;
|
22
22
|
|
23
23
|
static VALUE rb_gsl_histogram_alloc_from_file(VALUE klass, VALUE name);
|
24
|
-
#ifdef GSL_0_9_4_LATER
|
25
24
|
static VALUE rb_gsl_histogram_alloc(int argc, VALUE *argv, VALUE klass)
|
26
25
|
{
|
27
26
|
gsl_histogram *h = NULL;
|
@@ -68,8 +67,8 @@ static VALUE rb_gsl_histogram_alloc(int argc, VALUE *argv, VALUE klass)
|
|
68
67
|
case T_FIXNUM:
|
69
68
|
CHECK_FIXNUM(argv[0]);
|
70
69
|
if (TYPE(argv[1]) != T_ARRAY) {
|
71
|
-
|
72
|
-
|
70
|
+
rb_raise(rb_eTypeError, "wrong argument type %s (Array expected)",
|
71
|
+
rb_class2name(CLASS_OF(argv[1])));
|
73
72
|
}
|
74
73
|
n = FIX2INT(argv[0]);
|
75
74
|
min = NUM2DBL(rb_ary_entry(argv[1], 0));
|
@@ -133,7 +132,7 @@ static VALUE rb_gsl_histogram_alloc_from_file(VALUE klass, VALUE name)
|
|
133
132
|
h->range[n] = upper;
|
134
133
|
fclose(fp);
|
135
134
|
return Data_Wrap_Struct(klass, 0, gsl_histogram_free, h);
|
136
|
-
|
135
|
+
|
137
136
|
}
|
138
137
|
|
139
138
|
/* initialization + set uniform ranges (equal spacing from min to max) */
|
@@ -172,8 +171,8 @@ static VALUE rb_gsl_histogram_alloc_uniform(int argc, VALUE *argv, VALUE klass)
|
|
172
171
|
}
|
173
172
|
|
174
173
|
/* initialization + set ranges with a given spacing from min to max */
|
175
|
-
static VALUE rb_gsl_histogram_alloc_with_min_max_step(VALUE klass, VALUE vmin,
|
176
|
-
|
174
|
+
static VALUE rb_gsl_histogram_alloc_with_min_max_step(VALUE klass, VALUE vmin,
|
175
|
+
VALUE vmax, VALUE ss)
|
177
176
|
{
|
178
177
|
gsl_histogram *h = NULL;
|
179
178
|
gsl_vector *v = NULL;
|
@@ -196,7 +195,6 @@ static VALUE rb_gsl_histogram_alloc_with_min_max_step(VALUE klass, VALUE vmin,
|
|
196
195
|
gsl_vector_free(v);
|
197
196
|
return Data_Wrap_Struct(klass, 0, gsl_histogram_free, h);
|
198
197
|
}
|
199
|
-
#endif
|
200
198
|
|
201
199
|
static VALUE rb_gsl_histogram_calloc(VALUE klass, VALUE nn)
|
202
200
|
{
|
@@ -244,7 +242,7 @@ static VALUE rb_gsl_histogram_set_ranges(int argc, VALUE *argv, VALUE obj)
|
|
244
242
|
gsl_vector *v = NULL;
|
245
243
|
size_t size;
|
246
244
|
Data_Get_Struct(obj, gsl_histogram, h);
|
247
|
-
if (argc != 1 && argc != 2)
|
245
|
+
if (argc != 1 && argc != 2)
|
248
246
|
rb_raise(rb_eArgError, "wrong number of arguments (%d for 1 or 2)", argc);
|
249
247
|
if (TYPE(argv[0]) == T_ARRAY) {
|
250
248
|
v = make_cvector_from_rarray(argv[0]);
|
@@ -336,10 +334,6 @@ static VALUE rb_gsl_histogram_accumulate(int argc, VALUE *argv, VALUE obj)
|
|
336
334
|
gsl_vector_int *vi;
|
337
335
|
size_t i;
|
338
336
|
double weight = 1;
|
339
|
-
#ifdef HAVE_NARRAY_H
|
340
|
-
double *ptr;
|
341
|
-
size_t size, stride;
|
342
|
-
#endif
|
343
337
|
switch (argc) {
|
344
338
|
case 2:
|
345
339
|
Need_Float(argv[1]);
|
@@ -367,8 +361,10 @@ static VALUE rb_gsl_histogram_accumulate(int argc, VALUE *argv, VALUE obj)
|
|
367
361
|
gsl_histogram_accumulate(h, (double)gsl_vector_int_get(vi, i), weight);
|
368
362
|
#ifdef HAVE_NARRAY_H
|
369
363
|
} else if (NA_IsNArray(argv[0])) {
|
364
|
+
double *ptr;
|
365
|
+
size_t size, stride;
|
370
366
|
ptr = get_vector_ptr(argv[0], &stride, &size);
|
371
|
-
for (i = 0; i < size; i++)
|
367
|
+
for (i = 0; i < size; i++)
|
372
368
|
gsl_histogram_accumulate(h, ptr[i], weight);
|
373
369
|
#endif
|
374
370
|
} else {
|
@@ -386,7 +382,7 @@ static VALUE rb_gsl_histogram_accumulate2(int argc, VALUE *argv, VALUE obj)
|
|
386
382
|
case 2:
|
387
383
|
Need_Float(argv[1]);
|
388
384
|
weight = NUM2DBL(argv[1]);
|
389
|
-
|
385
|
+
/* no break; */
|
390
386
|
case 1:
|
391
387
|
Need_Float(argv[0]);
|
392
388
|
x = NUM2DBL(argv[0]);
|
@@ -494,17 +490,6 @@ static VALUE rb_gsl_histogram_sigma(VALUE obj)
|
|
494
490
|
return rb_float_new(gsl_histogram_sigma(h));
|
495
491
|
}
|
496
492
|
|
497
|
-
#ifndef GSL_1_1_LATER
|
498
|
-
double gsl_histogram_sum(const gsl_histogram * h)
|
499
|
-
{
|
500
|
-
double sum=0;
|
501
|
-
size_t i=0, n;
|
502
|
-
n=h->n;
|
503
|
-
while(i < n) sum += h->bin[i++];
|
504
|
-
return sum;
|
505
|
-
}
|
506
|
-
#endif
|
507
|
-
|
508
493
|
static VALUE rb_gsl_histogram_sum(VALUE obj)
|
509
494
|
{
|
510
495
|
gsl_histogram *h = NULL;
|
@@ -573,7 +558,7 @@ static VALUE rb_gsl_histogram_equal_bins_p(int argc, VALUE *argv, VALUE obj)
|
|
573
558
|
case T_CLASS:
|
574
559
|
case T_OBJECT:
|
575
560
|
if (argc != 2) rb_raise(rb_eArgError, "wrong number of arguments (%d for 2)",
|
576
|
-
|
561
|
+
argc);
|
577
562
|
CHECK_HISTOGRAM(argv[0]);
|
578
563
|
CHECK_HISTOGRAM(argv[1]);
|
579
564
|
Data_Get_Struct(argv[0], gsl_histogram, h1);
|
@@ -581,7 +566,7 @@ static VALUE rb_gsl_histogram_equal_bins_p(int argc, VALUE *argv, VALUE obj)
|
|
581
566
|
break;
|
582
567
|
default:
|
583
568
|
if (argc != 1) rb_raise(rb_eArgError, "wrong number of arguments (%d for 2)",
|
584
|
-
|
569
|
+
argc);
|
585
570
|
Data_Get_Struct(obj, gsl_histogram, h1);
|
586
571
|
CHECK_HISTOGRAM(argv[0]);
|
587
572
|
Data_Get_Struct(argv[0], gsl_histogram, h2);
|
@@ -598,7 +583,7 @@ static VALUE rb_gsl_histogram_equal_bins_p2(int argc, VALUE *argv, VALUE obj)
|
|
598
583
|
case T_CLASS:
|
599
584
|
case T_OBJECT:
|
600
585
|
if (argc != 2) rb_raise(rb_eArgError, "wrong number of arguments (%d for 2)",
|
601
|
-
|
586
|
+
argc);
|
602
587
|
CHECK_HISTOGRAM(argv[0]);
|
603
588
|
CHECK_HISTOGRAM(argv[1]);
|
604
589
|
Data_Get_Struct(argv[0], gsl_histogram, h1);
|
@@ -606,7 +591,7 @@ static VALUE rb_gsl_histogram_equal_bins_p2(int argc, VALUE *argv, VALUE obj)
|
|
606
591
|
break;
|
607
592
|
default:
|
608
593
|
if (argc != 1) rb_raise(rb_eArgError, "wrong number of arguments (%d for 2)",
|
609
|
-
|
594
|
+
argc);
|
610
595
|
Data_Get_Struct(obj, gsl_histogram, h1);
|
611
596
|
CHECK_HISTOGRAM(argv[0]);
|
612
597
|
Data_Get_Struct(argv[0], gsl_histogram, h2);
|
@@ -884,24 +869,17 @@ static VALUE rb_gsl_histogram_pdf_alloc(VALUE klass, VALUE nn)
|
|
884
869
|
{
|
885
870
|
gsl_histogram_pdf *h = NULL;
|
886
871
|
gsl_histogram *h0 = NULL;
|
887
|
-
|
888
|
-
|
889
|
-
|
890
|
-
|
891
|
-
|
892
|
-
|
893
|
-
CHECK_FIXNUM(nn);
|
872
|
+
if (rb_obj_is_kind_of(nn, cgsl_histogram)) {
|
873
|
+
Data_Get_Struct(nn, gsl_histogram, h0);
|
874
|
+
h = gsl_histogram_pdf_alloc(h0->n);
|
875
|
+
gsl_histogram_pdf_init(h, h0);
|
876
|
+
} else {
|
877
|
+
CHECK_FIXNUM(nn);
|
894
878
|
h = gsl_histogram_pdf_alloc(FIX2INT(nn));
|
895
879
|
}
|
896
|
-
#else
|
897
|
-
gsl_histogram *hh = NULL;
|
898
|
-
Data_Get_Struct(nn, gsl_histogram, hh);
|
899
|
-
h = gsl_histogram_pdf_alloc(hh);
|
900
|
-
#endif
|
901
880
|
return Data_Wrap_Struct(klass, 0, gsl_histogram_pdf_free, h);
|
902
881
|
}
|
903
882
|
|
904
|
-
#ifdef GSL_0_9_4_LATER
|
905
883
|
static VALUE rb_gsl_histogram_pdf_init(VALUE obj, VALUE hh)
|
906
884
|
{
|
907
885
|
gsl_histogram_pdf *p = NULL;
|
@@ -912,7 +890,6 @@ static VALUE rb_gsl_histogram_pdf_init(VALUE obj, VALUE hh)
|
|
912
890
|
gsl_histogram_pdf_init(p, h);
|
913
891
|
return obj;
|
914
892
|
}
|
915
|
-
#endif
|
916
893
|
|
917
894
|
static VALUE rb_gsl_histogram_pdf_sample(VALUE obj, VALUE r)
|
918
895
|
{
|
@@ -971,7 +948,7 @@ static VALUE rb_gsl_histogram_graph(int argc, VALUE *argv, VALUE obj)
|
|
971
948
|
fprintf(fp, "%e %e\n%e %e\n", v->range[i], v->bin[i], v->range[i+1], v->bin[i]);
|
972
949
|
}
|
973
950
|
fflush(fp);
|
974
|
-
|
951
|
+
pclose(fp);
|
975
952
|
fp = NULL;
|
976
953
|
return Qtrue;
|
977
954
|
#else
|
@@ -996,8 +973,8 @@ static VALUE rb_gsl_histogram_plot(int argc, VALUE *argv, VALUE obj)
|
|
996
973
|
case 1:
|
997
974
|
fp = popen("gnuplot -persist", "w");
|
998
975
|
if (fp == NULL) rb_raise(rb_eIOError, "GNU graph not found.");
|
999
|
-
if (TYPE(argv[0]) == T_STRING)
|
1000
|
-
fprintf(fp, "plot '-' %s\n", STR2CSTR(argv[0]));
|
976
|
+
if (TYPE(argv[0]) == T_STRING)
|
977
|
+
fprintf(fp, "plot '-' %s\n", STR2CSTR(argv[0]));
|
1001
978
|
else
|
1002
979
|
fprintf(fp, "plot '-' with fsteps\n");
|
1003
980
|
break;
|
@@ -1048,7 +1025,7 @@ static VALUE rb_gsl_histogram_fit_exponential(int argc, VALUE *argv, VALUE obj)
|
|
1048
1025
|
}
|
1049
1026
|
n = binend - binstart + 1;
|
1050
1027
|
dof = n - p;
|
1051
|
-
|
1028
|
+
|
1052
1029
|
x = gsl_vector_alloc(n);
|
1053
1030
|
w = gsl_vector_alloc(n);
|
1054
1031
|
lny = gsl_vector_alloc(n);
|
@@ -1059,15 +1036,15 @@ static VALUE rb_gsl_histogram_fit_exponential(int argc, VALUE *argv, VALUE obj)
|
|
1059
1036
|
gsl_vector_set(lny, i, log(h->bin[i+binstart]));
|
1060
1037
|
gsl_vector_set(w, i, h->bin[i+binstart]);
|
1061
1038
|
}
|
1062
|
-
gsl_fit_wlinear(x->data, 1, w->data, 1, lny->data, 1, n,
|
1063
|
-
|
1039
|
+
gsl_fit_wlinear(x->data, 1, w->data, 1, lny->data, 1, n,
|
1040
|
+
&c0, &c1, &cov00, &cov01, &cov11, &sumsq);
|
1064
1041
|
gsl_vector_free(lny);
|
1065
1042
|
gsl_vector_free(w);
|
1066
1043
|
gsl_vector_free(x);
|
1067
1044
|
c0 = exp(c0);
|
1068
|
-
return rb_ary_new3(6, rb_float_new(c0), rb_float_new(c1),
|
1069
|
-
|
1070
|
-
|
1045
|
+
return rb_ary_new3(6, rb_float_new(c0), rb_float_new(c1),
|
1046
|
+
rb_float_new(c0*sqrt(cov00)), rb_float_new(sqrt(cov11)),
|
1047
|
+
rb_float_new(sumsq), INT2FIX(dof));
|
1071
1048
|
}
|
1072
1049
|
|
1073
1050
|
static VALUE rb_gsl_histogram_fit_power(int argc, VALUE *argv, VALUE obj)
|
@@ -1094,7 +1071,7 @@ static VALUE rb_gsl_histogram_fit_power(int argc, VALUE *argv, VALUE obj)
|
|
1094
1071
|
}
|
1095
1072
|
n = binend - binstart + 1;
|
1096
1073
|
dof = n - p;
|
1097
|
-
|
1074
|
+
|
1098
1075
|
lnx = gsl_vector_alloc(n);
|
1099
1076
|
w = gsl_vector_alloc(n);
|
1100
1077
|
lny = gsl_vector_alloc(n);
|
@@ -1105,15 +1082,15 @@ static VALUE rb_gsl_histogram_fit_power(int argc, VALUE *argv, VALUE obj)
|
|
1105
1082
|
gsl_vector_set(lny, i, log(h->bin[i+binstart]));
|
1106
1083
|
gsl_vector_set(w, i, h->bin[i+binstart]);
|
1107
1084
|
}
|
1108
|
-
gsl_fit_wlinear(lnx->data, 1, w->data, 1, lny->data, 1, n,
|
1109
|
-
|
1085
|
+
gsl_fit_wlinear(lnx->data, 1, w->data, 1, lny->data, 1, n,
|
1086
|
+
&c0, &c1, &cov00, &cov01, &cov11, &sumsq);
|
1110
1087
|
gsl_vector_free(lny);
|
1111
1088
|
gsl_vector_free(w);
|
1112
1089
|
gsl_vector_free(lnx);
|
1113
1090
|
c0 = exp(c0);
|
1114
|
-
return rb_ary_new3(6, rb_float_new(c0), rb_float_new(c1),
|
1115
|
-
|
1116
|
-
|
1091
|
+
return rb_ary_new3(6, rb_float_new(c0), rb_float_new(c1),
|
1092
|
+
rb_float_new(c0*sqrt(cov00)), rb_float_new(sqrt(cov11)),
|
1093
|
+
rb_float_new(sumsq), INT2FIX(dof));
|
1117
1094
|
}
|
1118
1095
|
|
1119
1096
|
static int Gaussian_f(const gsl_vector *v, void *params, gsl_vector *f);
|
@@ -1173,8 +1150,8 @@ static int Gaussian_df(const gsl_vector *v, void *params, gsl_matrix *J)
|
|
1173
1150
|
return GSL_SUCCESS;
|
1174
1151
|
}
|
1175
1152
|
|
1176
|
-
static int Gaussian_fdf(const gsl_vector *v, void *params, gsl_vector *f,
|
1177
|
-
|
1153
|
+
static int Gaussian_fdf(const gsl_vector *v, void *params, gsl_vector *f,
|
1154
|
+
gsl_matrix *J)
|
1178
1155
|
{
|
1179
1156
|
Gaussian_f(v, params, f);
|
1180
1157
|
Gaussian_df(v, params, J);
|
@@ -1253,9 +1230,9 @@ static VALUE rb_gsl_histogram_fit_gaussian(int argc, VALUE *argv, VALUE obj)
|
|
1253
1230
|
gsl_vector_free(x);
|
1254
1231
|
gsl_matrix_free(covar);
|
1255
1232
|
return rb_ary_new3(8, rb_float_new(sigma), rb_float_new(mean),
|
1256
|
-
|
1257
|
-
|
1258
|
-
|
1233
|
+
rb_float_new(height), rb_float_new(errs),
|
1234
|
+
rb_float_new(errm), rb_float_new(errh),
|
1235
|
+
rb_float_new(chi2), INT2FIX(dof));
|
1259
1236
|
}
|
1260
1237
|
|
1261
1238
|
static int Rayleigh_f(const gsl_vector *v, void *params, gsl_vector *f);
|
@@ -1308,8 +1285,8 @@ static int Rayleigh_df(const gsl_vector *v, void *params, gsl_matrix *J)
|
|
1308
1285
|
return GSL_SUCCESS;
|
1309
1286
|
}
|
1310
1287
|
|
1311
|
-
static int Rayleigh_fdf(const gsl_vector *v, void *params, gsl_vector *f,
|
1312
|
-
|
1288
|
+
static int Rayleigh_fdf(const gsl_vector *v, void *params, gsl_vector *f,
|
1289
|
+
gsl_matrix *J)
|
1313
1290
|
{
|
1314
1291
|
Rayleigh_f(v, params, f);
|
1315
1292
|
Rayleigh_df(v, params, J);
|
@@ -1349,7 +1326,7 @@ static VALUE rb_gsl_histogram_fit_rayleigh(int argc, VALUE *argv, VALUE obj)
|
|
1349
1326
|
}
|
1350
1327
|
x = gsl_vector_alloc(p);
|
1351
1328
|
gsl_vector_set(x, 0, gsl_pow_2(gsl_histogram_sigma(h))); /* initial values, var = 1 */
|
1352
|
-
gsl_vector_set(x, 1, gsl_histogram_max_val(h));
|
1329
|
+
gsl_vector_set(x, 1, gsl_histogram_max_val(h));
|
1353
1330
|
hh.h = h;
|
1354
1331
|
hh.binstart = binstart;
|
1355
1332
|
hh.binend = binend;
|
@@ -1385,10 +1362,10 @@ static VALUE rb_gsl_histogram_fit_rayleigh(int argc, VALUE *argv, VALUE obj)
|
|
1385
1362
|
gsl_multifit_fdfsolver_free(s);
|
1386
1363
|
gsl_vector_free(x);
|
1387
1364
|
gsl_matrix_free(covar);
|
1388
|
-
return rb_ary_new3(6, rb_float_new(sigma),
|
1389
|
-
|
1390
|
-
|
1391
|
-
|
1365
|
+
return rb_ary_new3(6, rb_float_new(sigma),
|
1366
|
+
rb_float_new(height), rb_float_new(errs),
|
1367
|
+
rb_float_new(errh),
|
1368
|
+
rb_float_new(chi2), INT2FIX(dof));
|
1392
1369
|
}
|
1393
1370
|
|
1394
1371
|
/*
|
@@ -1444,8 +1421,8 @@ static int xExponential_df(const gsl_vector *v, void *params, gsl_matrix *J)
|
|
1444
1421
|
return GSL_SUCCESS;
|
1445
1422
|
}
|
1446
1423
|
|
1447
|
-
static int xExponential_fdf(const gsl_vector *v, void *params, gsl_vector *f,
|
1448
|
-
|
1424
|
+
static int xExponential_fdf(const gsl_vector *v, void *params, gsl_vector *f,
|
1425
|
+
gsl_matrix *J)
|
1449
1426
|
{
|
1450
1427
|
xExponential_f(v, params, f);
|
1451
1428
|
xExponential_df(v, params, J);
|
@@ -1485,7 +1462,7 @@ static VALUE rb_gsl_histogram_fit_xexponential(int argc, VALUE *argv, VALUE obj)
|
|
1485
1462
|
}
|
1486
1463
|
x = gsl_vector_alloc(p);
|
1487
1464
|
gsl_vector_set(x, 0, gsl_histogram_sigma(h)); /* initial values, var = 1 */
|
1488
|
-
gsl_vector_set(x, 1, gsl_histogram_max_val(h));
|
1465
|
+
gsl_vector_set(x, 1, gsl_histogram_max_val(h));
|
1489
1466
|
hh.h = h;
|
1490
1467
|
hh.binstart = binstart;
|
1491
1468
|
hh.binend = binend;
|
@@ -1521,10 +1498,10 @@ static VALUE rb_gsl_histogram_fit_xexponential(int argc, VALUE *argv, VALUE obj)
|
|
1521
1498
|
gsl_multifit_fdfsolver_free(s);
|
1522
1499
|
gsl_vector_free(x);
|
1523
1500
|
gsl_matrix_free(covar);
|
1524
|
-
return rb_ary_new3(6, rb_float_new(b),
|
1525
|
-
|
1526
|
-
|
1527
|
-
|
1501
|
+
return rb_ary_new3(6, rb_float_new(b),
|
1502
|
+
rb_float_new(height), rb_float_new(errs),
|
1503
|
+
rb_float_new(errh),
|
1504
|
+
rb_float_new(chi2), INT2FIX(dof));
|
1528
1505
|
}
|
1529
1506
|
|
1530
1507
|
static VALUE rb_gsl_histogram_fit(int argc, VALUE *argv, VALUE obj)
|
@@ -1539,20 +1516,20 @@ static VALUE rb_gsl_histogram_fit(int argc, VALUE *argv, VALUE obj)
|
|
1539
1516
|
return rb_gsl_histogram_fit_power(argc-1, argv+1, obj);
|
1540
1517
|
} else if (str_head_grep(fittype, "gaus") == 0) {
|
1541
1518
|
return rb_gsl_histogram_fit_gaussian(argc-1, argv+1, obj);
|
1542
|
-
|
1519
|
+
} else if (str_head_grep(fittype, "rayleigh") == 0) {
|
1543
1520
|
return rb_gsl_histogram_fit_rayleigh(argc-1, argv+1, obj);
|
1544
1521
|
} else if (str_head_grep(fittype, "xexp") == 0) {
|
1545
1522
|
return rb_gsl_histogram_fit_xexponential(argc-1, argv+1, obj);
|
1546
1523
|
} else {
|
1547
|
-
rb_raise(rb_eRuntimeError,
|
1548
|
-
|
1524
|
+
rb_raise(rb_eRuntimeError,
|
1525
|
+
"unknown fitting type %s (exp, power, gaus expected)", fittype);
|
1549
1526
|
}
|
1550
1527
|
return Qnil;
|
1551
1528
|
}
|
1552
1529
|
|
1553
1530
|
/* Integrate histogram: the two histograms must have the same range and bins. */
|
1554
1531
|
void mygsl_histogram_integrate(const gsl_histogram *h, gsl_histogram *hi,
|
1555
|
-
|
1532
|
+
size_t istart, size_t iend)
|
1556
1533
|
{
|
1557
1534
|
size_t i;
|
1558
1535
|
if (iend >= istart) {
|
@@ -1580,7 +1557,7 @@ void mygsl_histogram_differentiate(const gsl_histogram *hi, gsl_histogram *h)
|
|
1580
1557
|
|
1581
1558
|
/* Create a histogram integrating the given histogram h */
|
1582
1559
|
gsl_histogram* mygsl_histogram_calloc_integrate(const gsl_histogram *h,
|
1583
|
-
|
1560
|
+
size_t istart, size_t iend)
|
1584
1561
|
{
|
1585
1562
|
gsl_histogram *hi = NULL;
|
1586
1563
|
hi = gsl_histogram_calloc_range(h->n, h->range);
|
@@ -1616,16 +1593,16 @@ static VALUE rb_gsl_histogram_integrate(int argc, VALUE *argv, VALUE obj)
|
|
1616
1593
|
case T_FIXNUM:
|
1617
1594
|
itmp = FIX2INT(argv[0]);
|
1618
1595
|
if (itmp == -1) {
|
1619
|
-
|
1620
|
-
|
1596
|
+
istart = h->n - 1;
|
1597
|
+
iend = 0;
|
1621
1598
|
} else {
|
1622
|
-
|
1623
|
-
|
1599
|
+
istart = 0;
|
1600
|
+
iend = h->n - 1;
|
1624
1601
|
}
|
1625
1602
|
break;
|
1626
1603
|
default:
|
1627
1604
|
rb_raise(rb_eArgError, "wrong argument type %s (Arran or Fixnum expected)",
|
1628
|
-
|
1605
|
+
rb_class2name(CLASS_OF(argv[0])));
|
1629
1606
|
break;
|
1630
1607
|
}
|
1631
1608
|
break;
|
@@ -1692,27 +1669,27 @@ static VALUE rb_gsl_histogram_rebin(int argc, VALUE *argv, VALUE obj)
|
|
1692
1669
|
}
|
1693
1670
|
|
1694
1671
|
static int mygsl_histogram_fread2(FILE * stream, gsl_histogram * h)
|
1695
|
-
{
|
1672
|
+
{
|
1696
1673
|
double min, max;
|
1697
1674
|
int status;
|
1698
1675
|
status = gsl_block_raw_fread(stream, &min, 1, 1);
|
1699
|
-
if (status) return status;
|
1676
|
+
if (status) return status;
|
1700
1677
|
status = gsl_block_raw_fread(stream, &max, 1, 1);
|
1701
|
-
if (status) return status;
|
1678
|
+
if (status) return status;
|
1702
1679
|
gsl_histogram_set_ranges_uniform(h, min, max);
|
1703
|
-
status = gsl_block_raw_fread (stream, h->bin, h->n, 1);
|
1704
|
-
if (status) return status;
|
1680
|
+
status = gsl_block_raw_fread (stream, h->bin, h->n, 1);
|
1681
|
+
if (status) return status;
|
1705
1682
|
return status;
|
1706
1683
|
}
|
1707
1684
|
|
1708
1685
|
static int mygsl_histogram_fwrite2(FILE * stream, const gsl_histogram * h)
|
1709
|
-
{
|
1686
|
+
{
|
1710
1687
|
int status;
|
1711
1688
|
status = gsl_block_raw_fwrite (stream, h->range, 1, 1);
|
1712
|
-
if (status) return status;
|
1689
|
+
if (status) return status;
|
1713
1690
|
status = gsl_block_raw_fwrite (stream, h->range+h->n, 1, 1);
|
1714
|
-
if (status) return status;
|
1715
|
-
status = gsl_block_raw_fwrite (stream, h->bin, h->n, 1);
|
1691
|
+
if (status) return status;
|
1692
|
+
status = gsl_block_raw_fwrite (stream, h->bin, h->n, 1);
|
1716
1693
|
return status;
|
1717
1694
|
}
|
1718
1695
|
|
@@ -1833,33 +1810,31 @@ void Init_gsl_histogram(VALUE module)
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1833
1810
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VALUE cgsl_histogram_pdf;
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1834
1811
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1835
1812
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cgsl_histogram = rb_define_class_under(module, "Histogram", cGSL_Object);
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1836
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-
cgsl_histogram_range = rb_define_class_under(cgsl_histogram, "Range",
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1837
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-
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1838
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-
cgsl_histogram_bin = rb_define_class_under(cgsl_histogram, "Bin",
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1839
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-
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1840
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-
cgsl_histogram_integ = rb_define_class_under(cgsl_histogram, "Integral",
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1841
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-
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1842
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-
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1843
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-
#ifdef GSL_0_9_4_LATER
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1813
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+
cgsl_histogram_range = rb_define_class_under(cgsl_histogram, "Range",
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1814
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+
cgsl_vector_view_ro);
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1815
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+
cgsl_histogram_bin = rb_define_class_under(cgsl_histogram, "Bin",
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1816
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+
cgsl_vector_view);
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1817
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+
cgsl_histogram_integ = rb_define_class_under(cgsl_histogram, "Integral",
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1818
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+
cgsl_histogram);
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1819
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+
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1844
1820
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rb_define_singleton_method(cgsl_histogram, "alloc", rb_gsl_histogram_alloc, -1);
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1845
1821
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/* rb_define_singleton_method(cgsl_histogram, "new", rb_gsl_histogram_alloc, -1);*/
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1846
1822
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rb_define_singleton_method(cgsl_histogram, "[]", rb_gsl_histogram_alloc, -1);
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1847
1823
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1848
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-
rb_define_singleton_method(cgsl_histogram, "alloc_uniform",
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1849
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-
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1850
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-
rb_define_singleton_method(cgsl_histogram, "new_uniform",
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1851
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-
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1824
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+
rb_define_singleton_method(cgsl_histogram, "alloc_uniform",
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1825
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+
rb_gsl_histogram_alloc_uniform, -1);
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1826
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+
rb_define_singleton_method(cgsl_histogram, "new_uniform",
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1827
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+
rb_gsl_histogram_alloc_uniform, -1);
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1852
1828
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1853
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-
rb_define_singleton_method(cgsl_histogram, "alloc_with_min_max_step",
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1854
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-
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1855
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-
rb_define_singleton_method(cgsl_histogram, "new_with_min_max_step",
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1856
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-
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1857
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-
#endif
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1829
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+
rb_define_singleton_method(cgsl_histogram, "alloc_with_min_max_step",
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1830
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+
rb_gsl_histogram_alloc_with_min_max_step, 3);
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1831
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+
rb_define_singleton_method(cgsl_histogram, "new_with_min_max_step",
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1832
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+
rb_gsl_histogram_alloc_with_min_max_step, 3);
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1858
1833
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1859
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-
rb_define_singleton_method(cgsl_histogram, "calloc",
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1860
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-
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1861
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-
rb_define_singleton_method(cgsl_histogram, "calloc_range",
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1862
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-
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1834
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+
rb_define_singleton_method(cgsl_histogram, "calloc",
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1835
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rb_gsl_histogram_calloc, 1);
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1836
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+
rb_define_singleton_method(cgsl_histogram, "calloc_range",
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1837
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+
rb_gsl_histogram_calloc_range, -1);
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1863
1838
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1864
1839
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rb_define_method(cgsl_histogram, "bins", rb_gsl_histogram_bins, 0);
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1865
1840
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rb_define_alias(cgsl_histogram, "n", "bins");
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@@ -1867,8 +1842,8 @@ void Init_gsl_histogram(VALUE module)
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1867
1842
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rb_define_method(cgsl_histogram, "set_ranges", rb_gsl_histogram_set_ranges, -1);
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1868
1843
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rb_define_method(cgsl_histogram, "range", rb_gsl_histogram_range, 0);
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1869
1844
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rb_define_method(cgsl_histogram, "bin", rb_gsl_histogram_bin, 0);
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1870
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-
rb_define_method(cgsl_histogram, "set_ranges_uniform",
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1871
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-
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1845
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+
rb_define_method(cgsl_histogram, "set_ranges_uniform",
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1846
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+
rb_gsl_histogram_set_ranges_uniform, -1);
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1872
1847
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rb_define_singleton_method(cgsl_histogram, "memcpy", rb_gsl_histogram_memcpy, 2);
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1873
1848
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rb_define_method(cgsl_histogram, "clone", rb_gsl_histogram_clone, 0);
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1874
1849
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rb_define_alias(cgsl_histogram, "duplicate", "clone");
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@@ -1896,20 +1871,20 @@ void Init_gsl_histogram(VALUE module)
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1896
1871
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rb_define_method(cgsl_histogram, "sum", rb_gsl_histogram_integral, -1);
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1897
1872
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rb_define_alias(cgsl_histogram, "integral", "sum");
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1898
1873
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1899
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-
rb_define_method(cgsl_histogram, "equal_bins_p",
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1900
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-
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1874
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+
rb_define_method(cgsl_histogram, "equal_bins_p",
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1875
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+
rb_gsl_histogram_equal_bins_p, -1);
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1901
1876
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rb_define_alias(cgsl_histogram, "equal_bins", "equal_bins_p");
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1902
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-
rb_define_singleton_method(cgsl_histogram, "equal_bins_p",
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1903
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-
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1904
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-
rb_define_singleton_method(cgsl_histogram, "equal_bins",
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1905
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-
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1906
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-
rb_define_method(cgsl_histogram, "equal_bins_p?",
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1907
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-
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1877
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+
rb_define_singleton_method(cgsl_histogram, "equal_bins_p",
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1878
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+
rb_gsl_histogram_equal_bins_p, -1);
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1879
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+
rb_define_singleton_method(cgsl_histogram, "equal_bins",
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1880
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+
rb_gsl_histogram_equal_bins_p, -1);
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1881
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+
rb_define_method(cgsl_histogram, "equal_bins_p?",
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1882
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+
rb_gsl_histogram_equal_bins_p2, -1);
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1908
1883
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rb_define_alias(cgsl_histogram, "equal_bins?", "equal_bins_p?");
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1909
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-
rb_define_singleton_method(cgsl_histogram, "equal_bins_p?",
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1910
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-
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1911
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-
rb_define_singleton_method(cgsl_histogram, "equal_bins?",
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1912
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-
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1884
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+
rb_define_singleton_method(cgsl_histogram, "equal_bins_p?",
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1885
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+
rb_gsl_histogram_equal_bins_p2, -1);
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1886
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+
rb_define_singleton_method(cgsl_histogram, "equal_bins?",
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1887
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+
rb_gsl_histogram_equal_bins_p2, -1);
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1913
1888
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1914
1889
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rb_define_method(cgsl_histogram, "add", rb_gsl_histogram_add, 1);
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1915
1890
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rb_define_alias(cgsl_histogram, "+", "add");
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@@ -1940,13 +1915,11 @@ void Init_gsl_histogram(VALUE module)
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1940
1915
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rb_define_method(cgsl_histogram, "print", rb_gsl_histogram_print, 0);
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1941
1916
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1942
1917
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cgsl_histogram_pdf = rb_define_class_under(cgsl_histogram, "Pdf", cGSL_Object);
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1943
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-
rb_define_singleton_method(cgsl_histogram_pdf, "alloc",
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1944
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-
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1945
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-
/* rb_define_singleton_method(cgsl_histogram_pdf, "new",
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1918
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+
rb_define_singleton_method(cgsl_histogram_pdf, "alloc",
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1919
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+
rb_gsl_histogram_pdf_alloc, 1);
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1920
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+
/* rb_define_singleton_method(cgsl_histogram_pdf, "new",
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1946
1921
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rb_gsl_histogram_pdf_alloc, 1);*/
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1947
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-
#ifdef GSL_0_9_4_LATER
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1948
1922
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rb_define_method(cgsl_histogram_pdf, "init", rb_gsl_histogram_pdf_init, 1);
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1949
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-
#endif
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1950
1923
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rb_define_method(cgsl_histogram_pdf, "sample", rb_gsl_histogram_pdf_sample, 1);
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1951
1924
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1952
1925
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rb_define_method(cgsl_histogram_pdf, "range", rb_gsl_histogram_pdf_range, 0);
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@@ -1958,23 +1931,23 @@ void Init_gsl_histogram(VALUE module)
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1958
1931
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1959
1932
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rb_define_method(cgsl_histogram, "plot", rb_gsl_histogram_plot, -1);
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1960
1933
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1961
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-
rb_define_method(cgsl_histogram, "fit_gaussian",
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1962
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-
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1963
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-
rb_define_method(cgsl_histogram, "fit_exponential",
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1964
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-
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1965
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-
rb_define_method(cgsl_histogram, "fit_xexponential",
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1966
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-
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1967
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-
rb_define_method(cgsl_histogram, "fit_power",
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1968
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-
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1969
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-
rb_define_method(cgsl_histogram, "fit_rayleigh",
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1970
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-
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1971
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-
rb_define_method(cgsl_histogram, "fit",
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1972
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-
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1934
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+
rb_define_method(cgsl_histogram, "fit_gaussian",
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1935
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+
rb_gsl_histogram_fit_gaussian, -1);
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1936
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+
rb_define_method(cgsl_histogram, "fit_exponential",
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1937
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+
rb_gsl_histogram_fit_exponential, -1);
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1938
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+
rb_define_method(cgsl_histogram, "fit_xexponential",
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1939
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+
rb_gsl_histogram_fit_xexponential, -1);
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1940
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+
rb_define_method(cgsl_histogram, "fit_power",
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1941
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+
rb_gsl_histogram_fit_power, -1);
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1942
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+
rb_define_method(cgsl_histogram, "fit_rayleigh",
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1943
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+
rb_gsl_histogram_fit_rayleigh, -1);
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1944
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+
rb_define_method(cgsl_histogram, "fit",
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1945
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+
rb_gsl_histogram_fit, -1);
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1973
1946
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1974
1947
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rb_define_method(cgsl_histogram, "integrate", rb_gsl_histogram_integrate, -1);
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1975
1948
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rb_undef_method(cgsl_histogram_integ, "integrate");
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1976
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-
rb_define_method(cgsl_histogram_integ, "differentiate",
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1977
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-
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1949
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+
rb_define_method(cgsl_histogram_integ, "differentiate",
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1950
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+
rb_gsl_histogram_differentiate, 0);
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1978
1951
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rb_define_alias(cgsl_histogram_integ, "diff", "differentiate");
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1979
1952
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1980
1953
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rb_define_method(cgsl_histogram, "normalize", rb_gsl_histogram_normalize, 0);
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