quorum 0.1.0

metadata

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+--- !ruby/object:Gem::Specification
+name: quorum
+version: !ruby/object:Gem::Version
+  version: 0.1.0
+  prerelease: 
+platform: ruby
+authors:
+- Ken Seal
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2012-01-06 00:00:00.000000000Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: rails
+  requirement: &18633320 !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: 3.1.0
+  type: :runtime
+  prerelease: false
+  version_requirements: *18633320
+- !ruby/object:Gem::Dependency
+  name: jquery-rails
+  requirement: &18631940 !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: *18631940
+- !ruby/object:Gem::Dependency
+  name: net-ssh
+  requirement: &18630220 !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: 2.2.1
+  type: :runtime
+  prerelease: false
+  version_requirements: *18630220
+- !ruby/object:Gem::Dependency
+  name: resque
+  requirement: &18628400 !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: 1.19.0
+  type: :runtime
+  prerelease: false
+  version_requirements: *18628400
+- !ruby/object:Gem::Dependency
+  name: bio-blastxmlparser
+  requirement: &18624440 !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: 1.0.1
+  type: :runtime
+  prerelease: false
+  version_requirements: *18624440
+- !ruby/object:Gem::Dependency
+  name: mysql2
+  requirement: &18620600 !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: *18620600
+- !ruby/object:Gem::Dependency
+  name: rspec-rails
+  requirement: &18619380 !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '2.6'
+  type: :development
+  prerelease: false
+  version_requirements: *18619380
+- !ruby/object:Gem::Dependency
+  name: capybara
+  requirement: &18618260 !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: *18618260
+- !ruby/object:Gem::Dependency
+  name: database_cleaner
+  requirement: &18617000 !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: *18617000
+- !ruby/object:Gem::Dependency
+  name: factory_girl_rails
+  requirement: &18613860 !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: 1.2.0
+  type: :development
+  prerelease: false
+  version_requirements: *18613860
+description: Flexible bioinformatics search tool.
+email:
+- kas@ncgr.org
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- .gitignore
+- .rspec
+- Gemfile
+- Gemfile.lock
+- MIT-LICENSE
+- README.rdoc
+- Rakefile
+- app/assets/images/quorum/.gitkeep
+- app/assets/images/quorum/bg.png
+- app/assets/images/quorum/knight_rider.gif
+- app/assets/images/quorum/ui-bg_flat_0_aaaaaa_40x100.png
+- app/assets/images/quorum/ui-bg_flat_75_ffffff_40x100.png
+- app/assets/images/quorum/ui-bg_glass_55_fbf9ee_1x400.png
+- app/assets/images/quorum/ui-bg_glass_65_ffffff_1x400.png
+- app/assets/images/quorum/ui-bg_glass_75_dadada_1x400.png
+- app/assets/images/quorum/ui-bg_glass_75_e6e6e6_1x400.png
+- app/assets/images/quorum/ui-bg_highlight-soft_75_cccccc_1x100.png
+- app/assets/images/quorum/ui-bg_inset-soft_95_fef1ec_1x100.png
+- app/assets/images/quorum/ui-icons_222222_256x240.png
+- app/assets/images/quorum/ui-icons_2e83ff_256x240.png
+- app/assets/images/quorum/ui-icons_454545_256x240.png
+- app/assets/images/quorum/ui-icons_888888_256x240.png
+- app/assets/images/quorum/ui-icons_cd0a0a_256x240.png
+- app/assets/javascripts/quorum/application.js
+- app/assets/javascripts/quorum/jobs.js
+- app/assets/stylesheets/quorum/application.css
+- app/assets/stylesheets/quorum/jobs.css
+- app/assets/stylesheets/quorum/jquery-ui-1.8.16.custom.css
+- app/assets/stylesheets/quorum/tipsy.css
+- app/controllers/quorum/application_controller.rb
+- app/controllers/quorum/jobs_controller.rb
+- app/helpers/quorum/application_helper.rb
+- app/models/quorum/blastn_job.rb
+- app/models/quorum/blastn_job_report.rb
+- app/models/quorum/blastp_job.rb
+- app/models/quorum/blastp_job_report.rb
+- app/models/quorum/blastx_job.rb
+- app/models/quorum/blastx_job_report.rb
+- app/models/quorum/job.rb
+- app/models/quorum/tblastn_job.rb
+- app/models/quorum/tblastn_job_report.rb
+- app/views/layouts/quorum/application.html.erb
+- app/views/quorum/jobs/_blastn_form.html.erb
+- app/views/quorum/jobs/_blastp_form.html.erb
+- app/views/quorum/jobs/_blastx_form.html.erb
+- app/views/quorum/jobs/_tblastn_form.html.erb
+- app/views/quorum/jobs/new.html.erb
+- app/views/quorum/jobs/show.html.erb
+- app/views/shared/_error_messages.html.erb
+- config/locales/en.yml
+- config/routes.rb
+- db/migrate/20111031204518_create_jobs.rb
+- db/migrate/20111031204701_create_blastn_jobs.rb
+- db/migrate/20111031204719_create_blastx_jobs.rb
+- db/migrate/20111031204733_create_blastp_jobs.rb
+- db/migrate/20111031204754_create_tblastn_jobs.rb
+- db/migrate/20111031204846_create_blastn_job_reports.rb
+- db/migrate/20111031204903_create_blastx_job_reports.rb
+- db/migrate/20111031204922_create_blastp_job_reports.rb
+- db/migrate/20111031204941_create_tblastn_job_reports.rb
+- lib/generators/quorum/install_generator.rb
+- lib/generators/quorum/styles_generator.rb
+- lib/generators/quorum/views_generator.rb
+- lib/generators/templates/README
+- lib/generators/templates/blast.rb
+- lib/generators/templates/logger.rb
+- lib/generators/templates/quorum_initializer.rb
+- lib/generators/templates/quorum_settings.yml
+- lib/generators/templates/search
+- lib/generators/templates/trollop.rb
+- lib/quorum.rb
+- lib/quorum/engine.rb
+- lib/quorum/helpers.rb
+- lib/quorum/sequence.rb
+- lib/quorum/version.rb
+- lib/tasks/blastdb/README
+- lib/tasks/blastdb/build_blast_db.rb
+- lib/tasks/quorum_resque.rake
+- lib/tasks/quorum_tasks.rake
+- lib/workers/quorum.rb
+- quorum.gemspec
+- script/rails
+- spec/data/nucl_prot_seqs.txt
+- spec/data/nucl_seqs.txt
+- spec/data/prot_seqs.txt
+- spec/data/seqs.docx
+- spec/data/seqs_not_fa.txt
+- spec/data/tmp/test.tgz
+- spec/dummy/Rakefile
+- spec/dummy/app/assets/javascripts/application.js
+- spec/dummy/app/assets/stylesheets/application.css
+- spec/dummy/app/controllers/application_controller.rb
+- spec/dummy/app/helpers/application_helper.rb
+- spec/dummy/app/mailers/.gitkeep
+- spec/dummy/app/models/.gitkeep
+- spec/dummy/app/models/blast.rb
+- spec/dummy/app/views/layouts/application.html.erb
+- spec/dummy/config.ru
+- spec/dummy/config/application.rb
+- spec/dummy/config/boot.rb
+- spec/dummy/config/environment.rb
+- spec/dummy/config/environments/development.rb
+- spec/dummy/config/environments/production.rb
+- spec/dummy/config/environments/test.rb
+- spec/dummy/config/initializers/backtrace_silencers.rb
+- spec/dummy/config/initializers/inflections.rb
+- spec/dummy/config/initializers/mime_types.rb
+- spec/dummy/config/initializers/quorum_initializer.rb
+- spec/dummy/config/initializers/resque.rb
+- spec/dummy/config/initializers/secret_token.rb
+- spec/dummy/config/initializers/session_store.rb
+- spec/dummy/config/initializers/wrap_parameters.rb
+- spec/dummy/config/locales/en.yml
+- spec/dummy/config/locales/quorum.en.yml
+- spec/dummy/config/quorum_settings.yml
+- spec/dummy/config/routes.rb
+- spec/dummy/db/schema.rb
+- spec/dummy/lib/assets/.gitkeep
+- spec/dummy/log/.gitkeep
+- spec/dummy/public/404.html
+- spec/dummy/public/422.html
+- spec/dummy/public/500.html
+- spec/dummy/public/favicon.ico
+- spec/dummy/quorum/bin/search
+- spec/dummy/quorum/blastdb/test.nhd
+- spec/dummy/quorum/blastdb/test.nhi
+- spec/dummy/quorum/blastdb/test.nhr
+- spec/dummy/quorum/blastdb/test.nin
+- spec/dummy/quorum/blastdb/test.nog
+- spec/dummy/quorum/blastdb/test.nsd
+- spec/dummy/quorum/blastdb/test.nsi
+- spec/dummy/quorum/blastdb/test.nsq
+- spec/dummy/quorum/blastdb/test.phd
+- spec/dummy/quorum/blastdb/test.phi
+- spec/dummy/quorum/blastdb/test.phr
+- spec/dummy/quorum/blastdb/test.pin
+- spec/dummy/quorum/blastdb/test.pog
+- spec/dummy/quorum/blastdb/test.psd
+- spec/dummy/quorum/blastdb/test.psi
+- spec/dummy/quorum/blastdb/test.psq
+- spec/dummy/quorum/blastdb/test/contigs.fa
+- spec/dummy/quorum/blastdb/test/peptides.fa
+- spec/dummy/quorum/lib/logger.rb
+- spec/dummy/quorum/lib/search_tools/blast.rb
+- spec/dummy/quorum/lib/trollop.rb
+- spec/dummy/script/rails
+- spec/models/blastn_job_report_spec.rb
+- spec/models/blastn_job_spec.rb
+- spec/models/blastp_job_report_spec.rb
+- spec/models/blastp_job_spec.rb
+- spec/models/blastx_job_report_spec.rb
+- spec/models/blastx_job_spec.rb
+- spec/models/job_spec.rb
+- spec/models/tblastn_job_report_spec.rb
+- spec/models/tblastn_job_spec.rb
+- spec/quorum/quorum_sequence_spec.rb
+- spec/quorum_installed_spec.rb
+- spec/requests/jobs_spec.rb
+- spec/spec_helper.rb
+- spec/tasks/blastdb_rake_spec.rb
+- spec/templates/blast_spec.rb
+- spec/templates/logger_spec.rb
+- vendor/assets/javascripts/jquery.tipsy.js
+- vendor/assets/javascripts/underscore-min.js
+homepage: https://github.com/ncgr/quorum
+licenses: []
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  none: false
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+      segments:
+      - 0
+      hash: 1834928333496566984
+required_rubygems_version: !ruby/object:Gem::Requirement
+  none: false
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+      segments:
+      - 0
+      hash: 1834928333496566984
+requirements: []
+rubyforge_project: 
+rubygems_version: 1.8.10
+signing_key: 
+specification_version: 3
+summary: Flexible bioinformatics search tool.
+test_files: []