quorum 0.1.0

data/spec/data/nucl_seqs.txt

@@ -0,0 +1,32 @@
+>TOG900080
+TGATAGGATAATTCTAGACAAAACATTAGCCGATCAAGTGTCATCATGGAAAAGCAGCAGGGGCCTTAGTGATACAGTGGTGACTGATCATGCTTGTTCTGGGGAAACATGCTCGTACTACGCAATTGGAGATGTATTTATTTGTGAAAAGACTGGACAAGTTCATGTTTGTGACGAAACATGTAGGGAAGTAGTAATGGATCCCACCAACGAGCTTTTGGTCTGTACAATATCTGGCCACTGTTTTGACAGATTGCTATCACCTGCTGAAATGGAGCCTGATGCTGAGCAGCAGCAAGGTGGTGCGGCAGATGAGGCAGAACCGTTTATGGGATCTGGCCGTTTTGCACGGGCTTATTTGCTGGGATACAATTGTGCTGATGAAAAGGAGCTTGAAGCTACTTTGAGGTTTTGCTGATCCCTATTGGCCCTTCTGGAGTGGATGATCTCATGTCTCAGCATTTACCTATTTAAGATCAAATAAATCGGGTTTCCTTTTCGTGTTTCTCTTGGCATAAGAATGTTTGATTAGATCTAGATTATGAAACTCTAATCGTCTTCTATATTAATAATTGTATGCTTAAATTTATAGTTGAAATTCCATTGATGAATTTTTCTT
+>TOG899661
+CAGAAGACATGTCTTTGACAAAGGTATACCATCTTTTCCNCCAACTTGGTTTGAGACATTTATTTGTTGTACCTCGTCCATCGCGTGTGCTTGGTTTGATAACCAGAAAAGATTTGTTGATTGAGGACACAGATGCGAATACATTAGAGCTTCAGGCAACTAGTAGTTCGGCATCCAGGTAAAAGATTGATGGCAAGGAATGCAGATGTGGAGAGCCCTCTGCTAAATGGTCTTCTGGTTCAGAATCAGATACCTGACTAATACCGTCTGCAGCCTTCCCGAATTCCTTTTTGCGTCCCATTTTCACTTGAAAATCATTCTTTATTATTTTTGTATTAATGTTGAAATAGGTTAGAGAACCCGATATTTTGGGGATGGAACGGGGTTGTAGACTGACAGTATACCCTAGAATTTTGTATATAAAGTATAAACTACAGCAAGCACAGAAAAAAATCATGAAAGCGCCCTTGTGATAATTATGATAGCAGAATTTAGACTGAT
+>TOG899078
+CTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTCGTCGTTTTGGGTTCTGCGGATCGGTGGATTCTGGTCGCGAATTCCGACGCTGTTCGTGGCGGCGAACCGAATTCCGGTCAACAAGCGAAGAAGATGAAGGTTTTCGTCAAGACTCTGAAGGGCTCTCACTTCGAAATCGAAGTCAAGCCCCAAGACACGGTTTCGGATGTGAAGAAAAATATTGAAACTGTTCAAGGTGGATGTCTATCCTGCCGCGCAGCAAATGCTTATTCATCAAGGGAAAGTTCTTAAGGATGGTACTACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTGATTATGATTTCCAAGAGTAAGACTCCGTCTGGTGAAGGATCTACTACTTCAGCTGCACCTTCAGCTAAGGCTCCAGCTCCTGCTCCTATATCTTCGGGCACGGCTGTGGAAGGTTCTGATGTCTATGGACAAGCAGCATCCAATCTGGTTGCTGGTAGCAACTTGGAAGACACAATTCAGCAAATTCTTGATGTTGGAGGAGGGACCTGGGATAGGGATACTGTAGTCCGGGCTCTTCGAGCTGCCTTCAACAACCCTGAGAGAGCTATTGAATATTTATATTCAGGAATCCCCGAGCAAGCTGAAGCTCCACCTGTGGGCCGTGTGCCTGCAAGTGCACAACCTGCAAATCCTCCAGCAGCTGCAGCTCCGCAAGCGGCACAACCTGCTCCTGTTACCTCAAGTGGGCCTAATGCTAATCCTTTAGACCTTTTTCCACAGGGCCTCCCAAATGTTGGTTCTGGTGGTGCTGGTGCTGGTGCTGGCTCTTTAGATTTTCTTCGCAACAGCCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAGAATCCTCATCTAATGAGATTGATTCGAGATCATCAAGCTGACTTCCTTCGCTTGATAAATGAGCCTGTGGAAGGTGGCGAAGGGAACCCATTGGGGCAGCTGGCTGGTGGCATACCACAAGCAATAACTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGTTTCGATCGTGCGATTGTATTGGAGGTGTTCTTCGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTCGACGAACAATAAATCTCTTCATGTTGCTAAATTATTTATCTGTTATCTTTTTAATGTTTATGGGGCCTTTGTTTTACTAGACGGTTTGATGAGGTAATACTTGAAAATGAAAAAAATCTCAAGTGGAGAAGGAACGTTTTTACCACCTCCACATTATTGCCTTTGTGGACAGTCTCAGTATTCATATACATAGTCGTTTGTCCTGTACTATTGGTATTGTGCATCCTTTTAACATGTGTAATTGTTTAGCTGCGCATCCTATTCTATATTTTCT
+>TOG896930
+CGTTCGCATTGTTCACTCACCATACGCACTTCCATTTTCATCTCCCACCGTCGCATTTTCTTCGGATCTGAAATTCCTCACCATGAATCGCCACCACGATCCCAATCCATTCGACGAAGACGAAGTCAATCCCTTCTCGAACGGTGCTGCTCCTGGATCTAAATCACGTATTCCACCATTGGCATCCGAACCACTGGGCTTTGGTCAAAGACATGATGCTACAGTTGATATTCCTTTGGATACCACAAATGAGCCTAAAAAAAAAGGTCAAGAGCTAGCAGCTTGGGAAGCAGATTTGAAAAGGAGAGAAAAGGATTTAAAAAGAAGAGAGGATGCTGTTTCTAGAGCTGGTGTGCCTGTTGATGATAAGAATTGGCCTCCGATTTTCCCAATTATTCACCATGATATTGCCAATGAGATACCGGTTCATGCTCAGAGGCTGCAATATTTGGCCTTTGCAAGTTGGTTAGGAATTGTTCTCTGCCTTGTTTTTAATGTAGTTGCTGTGATGGTCTGTTGGATCAGAGGCGGTGGTGTTAAAATTTTTTTCCTTGCGGTGATCTATGCTCTACTTGGTGTTCCCCTTTCATATGTGCTTTGGTACAGGCCCCTTTATCGTGCTATGAGGACGGATAGTGCACTGAAGTTTGGCTGGTTTTTCATGTTCTACTTGCTTCATATTGCATTTTGCATCTTTGCTGCAATTGCACCTCCAGTTGTTTTTCATGGGAAATCATTAACGGGCATCCTTGCAGCAACTGACGTCTTCTCAGACCATGTATTGGTTGGGATATTCTATTTGGTTGGATTTGGCCTGTTTTGCTTGGAGTCTCTTCTAAGCTTGTGGGTAATTCAGAAAATATACCTGTTTTTCCGGGGGCATAAGTGAGGCTACTCAGGATTTTGATCCATCGGCTTTTATGATATCAGTCACTTCCCGGCGTGGCTTAGTATATTCTTTCTTTTTGTCTATCCTCTTTTTTCGCTTGCAATATTTTCGTGTGATATTGTTTGTTGTTGTAGTCTAGTTCTTGTTACAGAGCTTAGTGTGTAATTTCCTGTGTAATGAATTCTGTGAAGTTTAGTAATTTTCTAGTGTAACAATAACCAAGCTTTGCTTTCGATAAGCATATATGTAGTGGATTTCCATAAGGAATTATTGTAGTGCTATTGTAGTTGTGAATAGTGACACCCCTCGGAGGTTTTCTATTTGTAAGACAGCACTGATGCAAACACTTTAGTTAAAATTCATGTAGGATCTATTCAATT
+>TOG902802
+CAGGATACACCTCCAGATGGGGAAAATATGACAGGAGCCTCCAAAGAGATGAATGTAGAATCTATTCCTTCCTTCTTTCAAGATATTATTGAGCGTATGGTTTCCTCACAAGTTATGACTGTGAAGCCTGATGCTTGCATTGTGGATTTCTATAATGAGGGCGATCACTCACATCCCTACAATTGGCCACATTGGTATGGAAGGCCTGTCTATATCCTTTCCCTGACAGAATGTGATATGACTTTAGGAAGAGTAATTTCCTCAGACCATCCAGGGGATTACAGGGGCTCTCTGAAGCTTTCTCTTCTCCCTGGGTCTCTTCTGTCAAGGCAAGGGAAATCTACTAATTTTGCTAGATATGCTATTCCTTCTATCCGCAAACAACGCATACTTGTTATTTTTACAAAGTCCCAACCAAAGAAGTCACTGTCAAGTGATGCTCAACGTTTTACCTCATCAGCAGCATCTTCTCATTGGGGTCCACCGCCAAGCCGTTCCCCCAATCACGTTCGTCATCATTTAGGCCACAAGCATTATGCTTCAGCTCCAACAAACGGAGGACTGCCAGCTCCACCAATCCGGCCACA
+>TOG913027
+AAGGACTAGTTGATTTGCTACATGTGTTCTGTGTTGTTCTTGCTTTGGTAAATGTGTCTCTAGTGAAAGCAGAAGATCCATACAAGTTCTACACATGGACAGTGACTTATGGAACTCTTTCTCCTCTGGGCAGTCCTCAACAAGTTATTCTGATCAATGGTCAGTTTCCTGGTCCAAGACTTGACTTGGTAACTAATGACAACGTGATTCTCAACCTCATCAACAAGCTGGATGAGCCATTCTTGCTCACATGGAATGGCATTAAGCAGAGGAAAAATTCTTGGCAAGATGGGGTTTTAGGAACTAACTGTCCCATTCCTCCAAACTCAAATTACACTTACAAGTTTCAGGCCAAGGATCAGATTGGCACTTATACATACTTTCCATCAACTAAGATGCATAAAGCTTCTGGAGGGTTTGGAGCTCTCAATGTTCTTCATAGATCTGTCATCCCAATCCCTTATCCAAACCCTGATGGAGATTTTACATTACTCATTGGTGATTGGTACAAAACTAGCCACAAGACATTAAGCCAAACATTGGATTCTGGGAAATCTCTTGCCTTTCCTGATGGCCTCCTTATCAATGGCCAGGCTCATTCTACCTTCACTGTTAACCAGGGAAAAACCTATATGTTCAGGATCTCAAATGTTGGTCTGTCAACCTCAATTAACTTCAGAATTCAGGGACATACCCTAAAACTAGTTGAGGTTGAAGGATCACACACTATCCAGAACGAATACGACTCGCTTGATGTGCATGTTGGCCAATCAGTTTCTGTGTTAGTAACCTTAAATCAACCTCCAAAGGACTATTACATCGTTGCCTCAACAAGATTTACCAAGACTGTTCTCACTACAACCTCAGTGCTACACTAAAATTCTCAGTCAGCCGCATCAGGATCCTTGCCTGCTCCCCCTGCTGACAAT
+>TOG919655
+ATTGAAATACGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTCGAATATAGCAAGGATATGCCTCCCCAAAAAATTAAAGTGCCTACAATTCAATCTGAAAGGCCTGCATACCCATCATCAAAGCCAAGGACAAAAGATTGGGATAAGTTGGAAGCTATGGTGAAAAAAGAGGAGAAAGAAGAAAAGCTGGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTATCAAAATGCTGATGAGGACATGCGGAGAGCAATGAGCAAGTCATTTCTGGAGTCAAATGGAACAGTGCTGTCAACGGATTGGAAAGAAGTGGGATCCAAGAAGGTGGAAGGAAGTCCTCCAGAAGGTATGGAATTGAAGAAATGGGAGTACTAATTCAGTACAAGCTGATGCTCATGAGAGTTCAAATTCACAAAAATAAATTCTGAGAAGGGAAACAAATTCTGTAATCTTAATGGTATCGGTTATTTTG
+>TOG906701
+TGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCCATGAGCAACATTGAGTCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAATACAGGAAATGATGGTGTCAGGAATCAATCAACTAATCCCTCAACGACTAATTCTGAAGCAACTTCCCCTGTTCCAAATACTAACCCACTTCCTAATCCTTGGTCCTCCACTGGAACTGGAGGTGCACAAGGCAACACCAGAAGGACAACTGCTGGTGGGGATGCTCGGCAGCAGGCACTCACTGGACTAGGAGGACTTGGTGTGCCAGATCTTGAAGGCATGATGGGTGGTATGCCAGATCCTGCTATGTTGACCCAATTAATGCAAAATCCAGCTATTTCACAAATGATGCAGAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGTCTCAATACTGAGCAGCGTGGCATGCCTGATCTAAACTCACTAAGAAGATGTGATGCAAAACCCAGAGTTTCTTCGCTTATTTTCCTCACCTGAGACACTGCAGCAACTCATGTCTTTCCAGCAATCTCTTATGTCTCAAGTTGG
+>TOG894885
+CAGCTCTATTCTCCACCAACACAAAAACGCTCACAAACTAGCTTCTTTGGAGAAAACATTAGAGACAATAGTGGCGGTGGTGGGAACAATGGCAGCCTCACTACAAGCAGCAGCTACTTTCATGCAACCAACCAAGTTTGGTCGCACCAACACTTTGCAGCTGAAATCTACTCAATCCATTTCTAAGGCTTTTGGGTTGGAGCCCTCTGCAGCTAAGGTCTCATGTTCCCTTCAGGCTGATTTCAAGGAGTTGGCTCACAAGTGTGTTGAAGCTACCAAGATTGCTGGGTTTGCTCTTGCCACCTCTGCTCTAGTTGTCTCTGGAGCAAGTGCGGAAGGTGCTCCGAAGAGGCTAACCTTCGATGAAATCCAGAGCAAGACATACATGGAAGTGAAGGGAACCGGAACCGCAAACCAGTGCCCCACCATTGAAGGGGGAGTGGAATCATTTTCCTTCAAGGCCGGGAAGTACAATGCCAAGAAGTTCTGCCTTGAACCCACTTCATTCACAGTGAAGGCAGAGGGAGTAGCCAAGAACGCCCCACTTGAGTTCCAAAACACCAAGCTCATGACACGTCTGACCTACACCCTCGACGAGATCGAAGGACCCTTTGAGGTTTCCTCTGATGGCACTGTCAAGTTCGAGGAGAAAGATGGCATTGACTACGCTGCTGTCACAGTTCAGCTTCCCGGTGGCGAGCGTGTTCCATTCCTTTTCACCATCAAACAGTTGGTAGCATCTGGGAAGCCAGACAGCTTCAGTGGGGAGTTTCTAGTGCCTTCATACCGTGGATCTTCCTTCTTGGACCCCAAGGGAAGAGGTGCGTCAACTGGTTATGACAATGCTGTCGCATTGCCTGCTGGTGGCAGAGGAGATGAGGAAGAACTTGCTAAGGAGAACAACCAGAGTGCTTCTTCATCCCAAGGGAAGATCACCTTGAGCGTGACACAGAGCAAGCCTGATACCGGTGAGGTGATTGGTGTGTTCGAGAGCATTCAGCCGTCCGACACTGATTTGGGAGCGAAAGCTCCCAAGGATGTGAAGATCCAGGGAGTTTGGTATGCTCAGCTCGAGTCATAGACAGCTTTATCTCTCTTCTGCTTTATTTTGTATTTTGTTGTAACTTCTCAGTGTTGCTGCCATTACCTTTGACACCACTGTCCCAGCATGAGAGTGTTATCCTTGTTTGTATGTATACTATCGACTTTCAATTATAATGCTCGAAAATGTCCAAGGTTT
+>TOG897619
+AGCAGTGTTCCCATGAAACCTTCCCACTGAGTCAACTCACTCTGTACATAAAACCCTCTTCATCATCATCATGGCTTCTCAAGTTTTTCTTCAGCAAGGGTTGTTACTGTTTGCCCCAAACCAATGTTCTCCAACCAAGCTCGGTGTATCTTCTTGCCTCGGTTCTCGTAACTTTCCGTTGATTTCCTCCACCTCAATTTCATGGCGTTGCAACAACCCTCTCTCTGCCAAACCCTCTTTTGTTGTCAGAGCTGACTCCAATGTCGACGCTGCTTCCGACAATGCTGGTGAAGTTCCAGAAGCTGAAGGTAGCGTTGATCAGGTTCCTGAAGATGGAGAAGCAGAACTAGCTTCGGATTCTGAGGTGGAGCAACCCAAGCCCCCTAGAAAGCAACGAGTCAAGCTTGGAGATGTTATGGGGATATTGAATCAGAGGGCAATTGAGGCATCGGAAAGCATGAGGCCGACTCCAGAAATTAGGACTGGAGATGTTGTGGAAATCAAACTGGAAGTTCCTGAGAACAAGCGTAGGTTGTCTATTTATAAAGGTATAGTCATCTCAAGACAAAATGCTGGTATTCACACAACTATTCGAATCCGAAGGATTATTGCTGGCACAGGGGTTGAGATTGTCTTCCCAATTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAACCACCGTAAAGTCAGAAGAGCAAGATTGTACTATTTAAGAGACAAGCTTCCCAGATTCTCCACTTTCAAATGATACGGTTACCACTTCTCATCCTGATCTTCTTCAAAGTAGTTGCTGATATTGCAGGGCCATATTTTGGTTATTTCGTTTTGTTGTGTTGTAGAATATATCATTTTTCTTCCTCTAAATCTATCCTCCGAGAATTGGAAACAAGTGTATGTATGTTGCCCTTGATAATATTTGAAATTTGAAGTGTTCTCCCTTGCATTCCTTGGTATAGGATAGAAAGCCAAGCTCCTAAACAAACATTACTAAATATGACAGTCTAAGGAATGAGCATGTGTATCGATACCAGTTAAGTGCATTGTGAATGTATTTTTTTTTTTTATCTCTATCCATAAAAAAAGGTATGTTCATTCTTG
+>TOG898302
+AAGAAACAAGAGAGAGAAGATGATTTAGATGAGCCAAAAACAAAGGAAAAACGGCAAAAGGGAGAGAAAGGAAAATCTCCATCAGGTTTTCTTGCTCCTCTCCAGCTATCTGATGCCCTTGTAAACTTCCTTGGTACTGGAGAAAGTGAATTATCAAGATCTGATGTCATAAAAAGAATGTGGGAATACATAAAAGGAAACGACCTTCAGGATCCTTCTGACAAGAGGAAAATATTATGCGACGACAAGCTGAAAGAACTCTTTGATGTGGACTCCTTTAACGGCTTCACCGTTACAAAACTGTTGACTCCTCATTTTATAAAGGCAGAGCAGTGAGTTGCTTGTGGAAATCGGTAATGTTGTCCAATTAGGTTTGGAAGGTCCTTCTTTTGTGGCCTTTTGGCATTGTCTGCCAACACGAGGAATAGGAATTAGGAACATGACAGATTTTCAGTAAATTTTTCTCCAAGAATTTAATGTTACGTGACCATTACTTTGTTTTTTTTAATATCACGTTTTGTCACTTGGCAGTTGAAATTTTTGTATATTTTCAGTTCCTGAAGCTGCAAGGATAATGCTGACTTCTTACTCTACTCTGCATTTGCTCATATGAGGCACTACACATATCCATAATACATGAATAAATTTGCAGTATTGAA
+>TOG897516
+CATTTGTTCCATTTGCTCAGGCATTTGCAGCTGTACTTACAGCTGTCCTTACTGGTTCTCTCTATTATGTGGCTGCCTCTCCTAAAGATCCTACTTATATTGTGGCACCTGTTTTACAGTCTCGCTCTGGTCGTCAAGATTTGAAAAAGCTATTTGAAGCCTGGTATGAGAAACGGCAAATGAAAAAAATATATTCACCACTTCTGGAAGGACTACTAGCTCTCTACCTAGGATTTGAGTGGATCCAAACGAATAACATTCTTGCTCCCATTATCACACATGGCATATACTCCACAGTTATATTGGGACATGGCCTTTGGAAGATAAACGACCACCGGCGAAGACTACGTCAAAGAATCCAACAGCTCAAATCTGAAGAACAAAATTCCCAGTAGACTTTGAAATACCTTCCATGTCTGGCTGTGATACAAAAAATGTATATGTATGTATTAGAGCTGCTAATTATGTAAAGAGAAAAGATGTATATACTTGTGTTAGCTGAGGTCTCGTACACACTGAATATTCAGGTTTTGTTCACCATTTTCTAATTTCGAGTTACTATATGTAGTGTTTTCTAATAAAATGAAATAAAATCCCCAAGTTGGGTTGATTTAAATT
+>TOG894063
+GAGACCTGTTATGATTCACAGAGCCATTCTAGGATCTGTTGAGCGCATGTTTGCCATTCTTTTAGAGCACTACAAGGGTAAATGGCCCTTGTGGCTCAGTCCTCGTCAAGCAATTGTATGTCCTGTGTCAGAGAAATCACAAGCTTATGCACTGCAGGTGCGAGATCAGATCCACCAAGCAGGATATCACGTTGATGCTGATACAACTGATCGGAAGATTCAGAAGAAGGTACGGGAAGCTCAATTAGCGCAGTACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGGTGAGTGTACGGGTTAGAGATAAAGCAGACCATAGCGTTATGAGTATTGAGAATCTACTCAAACACTTCAGCGACGAAGTTGCAGCTTTTCATTGATACTTCTCTTGTGAAAACTGTTGGAAGCAAATTTTACCCCCACTCACCTAGTTTGTTCACACTTTGTGTGCATTATTTATATTTTCAGCCTGACAATTTACATTTAGATGATTTGGGTAATGACTGTATTTTCTATGTGAATTTTGGAGCGCACTGATATCGATCCATTGTTTGAAAAGCTGAGAGAAAGTGTAATCTTTTATTTTCTGTCTACATTTTAATTATGTTTTTCGTTAGTTTTTTCCTTTTATATATTTGTTTGTTAAATTGAAGGAAACTATTGTTGG
+>TOG897346
+GGCACCAGGGATCTTACAAGGCTGGATCTCCATAATAACAAGTTGACAGGGCCTATTCCTCCTCAAATTGGACGGTTGAAGCGTCTTAAAATACTCAATTTGAGGTGGAACAAACTACAGGATGCAATTCCTCCAGAAATTGGCGAGCTTAAAAGTTTAACACATCTGTACCTAAGCTTCAATAGTTTCAAGGGAGAAATTCCCAAAGAGCTAGCAAATCTTCCAGACCTTCGCTACCTTTATCTTCATGAAAACCGTTTAATTGGTAGGATACCACCTGAGTTGGGCACTCTACAAAACCTTCGGCACTTGGATGCTGGTAACAATCATTTGGTGGGTACCATAAGGGAACTCATTCGTATTGAAGGTTGCTTTCCAGCACTCCGCAATCTATATCTAAACAATAATTATTTTACTGGAGGAATGCCTGCACAACTTGCCAACTTATCCAGTCTTGAGATCTTGTACCTGTCCTACAATAAAATGTCAGGAGTTATACCATCTAGCCTTGCTCATATTCCTAAATTGACATACTTGTACTTGGATCACAATCAGTTTTCGGGGAGAATTCCCGAACCCTTTTACAAACATTCATTTTTGAAAGAAATGTACATCGAGGGAAATGCATTCCGGCCTGGTGTTAAACCCATTGGTTTCCATAAAGTGCTTGAAGTTTCTGATTCAGACTTCCTTGTTTAATGAAACTCAACATATTTAGTTTTTTAGGAAGTTTACGTGTATAATTAATGAAACAATAGCTCCTCTGATTTTCTCAATGAAAATTGCTATATGGGTAATTCAATTTTTGTCACGGCTGTCTTGTCAGAAGAATCAATAAATAATAGTGTTTTTTAACTCT
+>TOG915900
+GGAAATGAGCACAATGTTAAGCAGATCAAGAATTACCGCCAAAAGGTTGAGGAGGAACTCTCCAAAATTTGTGGTGACATCCTGACTATTATAGACCAGCATCTAATTCCTTCTTCCGCCTCAGCAGAAGCTAGTGTTTTCTACTATAAGATGAAAGGTGATTATTATCGGTATCTTGCTGAGTTCAAGACCGACCAAGAAAGGAAAGAGGCAGCCGAGCAGTCACTCAAGGGATATGAGGCTGCTTCAGCCACTGCCAACACCGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCTCTCAACTTCTCTGTCTTTTATTACGAGATCATGAACTCTCCTGAAAGGGCCTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCAGAGTTGGACACCTTGAGTGAAGAGTCATACAAGGACAGTACTTTGATCATGCAGTTGTTGAGAGACAACCTGACTCTCTGGACATCCGATTTGCCAGAAGATGGAGGCGAGGAGAACATAAAAGCTGAAGAAGCCAAACCTACTGAGCCTGAGAATTAACTAGGTTCTTTTGGATCTTTGGCCCTGATTCAATAGTCAGATTTTTGTGGTGCTCTGCAAAGAGGGCATTTTTCAGCTTTTCTTGCAATGGATTTGGAATGGACAATATGAGCTGTCGCCACTTCATAATTACCAACCAAAGCCAAAAGATCTGAGCCTGCCTTTTCTTTATTTCTTTAAATTGTTTTTCTTTCTTACTGCCTTTATCTATTTTAAGCAAAGTGGTCGGTTGAAACAATGGATAATTCACATTTAAATCATAAGAATCTTTTTCAAGTGTTCATTACATCCGTTTTGGTTCGTTTAAAATATTGTTTCCTATGCGCTCCTAGATGGGATACAGTACAAGTATTCAACTGTTGAGCAGAGATTTTTACCTCAAAAAATTAGT
+>TOG895871
+AGACACAACATCATAGAAACAGATCAACAACACATTAAAATTAGCATGGATCATAGCTTACGTTGTTTTGGGTCGACACTACCCAAAACTCTTCTTCAGTTTCTGTTATCACCTTCACTCCTTCTCTTCATCTCCTTCTTCAGTTTCTCCAACGCAGCCTTCGACCTCGCCACCATACCCTTCAACGATGCCTATTCACCCCTCTTTGGGGATGGCAACCTTGTCCGCTCCGCCGATGGCAACGGTGTTCAACTCCTCCTCGATCGCTTCACCGGTTCTGGTTTCGTTTCTTCCAATATGTACCAGCATGGATTCTTCAGCGCCAATATCAAGCTACCATCGAATTACAGCGCTGGTATTTGCGTGGCCTTTTATACATCAAACAATGAGATGTTTGAGAAGACACACGATGAGTTAGACTTTGAATTCTTAGGTAATATAGCCGGAAAGCCTTGGAGGTTTCAGACAAACTTGTACGGCAATGGCAGCACCAACCGTGGCCGTGAGGAGCGGTACCGCCTCTGGTTTGATCCAACCAAGGGATTCCATAGATACAGCATTCTATGGACAGCTAAGAACATCATATTTTACATAGATGAGGTTCCAATTAGAGAAATTATAAGAAGTGAAGAAATGGGAGCTGATTACCCAGCAAAGCCAATGGCATTATACGCCACAATATGGGATGCATCAAATTGGGCCACATCGGGTGGAAA

data/spec/data/prot_seqs.txt

@@ -0,0 +1,4 @@
+>ADA84676.1 protein L-isoaspartyl methyltransferase 1 [Cicer arietinum]
+MEQYWSGSAINENKGMVENLQRYGIIKSSKVAETMEKIDRGLFVPNGVQPYIDSPMSIGYNATISAPHMHATCLQLLENYLQPGMHALDVGSGTGYLTACFAMMVGPNGRAVGVEHIPELVSFSINNIEKSAAAPQLKDGSLSVHEGDGRQGWPEFATYDAIHVGAAAPEIPQPLIDQLKTGGRMIIPVGNVFQDLKVVDKNSDGSISIRTETSVRYVPLTSKEAQLKE
+>ADA84676.2 protein L-isoaspartyl methyltransferase 1 [Cicer arietinum]
+MEQYWSGSAGIIKSSKVAETMEKIDRGLFVPNGVQPYIDSPMSIGYNATISAPHMHATCLQLLENYLQINENKGMVENLQRYPGMHALDVGSGTGYLTACFAMMVGPNGRAVGVEHIPELVSFSINNIEKSAAAPQLKDGSLSVHEGDGRQGWPEFATYDAIHVGAAAPEIPGIIKSSKVAETMEKIDRGLFVPNGVQPYIDSPMSIGYNATISAPHMHATCLQLLENYLQPLIDQLKTGGRMIIPVGNVFQDLKVVDKNSDGSISIRTETGIIKSSKVAETMEKIDRGLFVPNGVQPYIDSPMSIGYNATISAPHMHATCLQLLENYLQSVRYVPLTSKEAQLKE

data/spec/data/seqs_not_fa.txt

@@ -0,0 +1,16 @@
+TGATAGGATAATTCTAGACAAAACATTAGCCGATCAAGTGTCATCATGGAAAAGCAGCAGGGGCCTTAGTGATACAGTGGTGACTGATCATGCTTGTTCTGGGGAAACATGCTCGTACTACGCAATTGGAGATGTATTTATTTGTGAAAAGACTGGACAAGTTCATGTTTGTGACGAAACATGTAGGGAAGTAGTAATGGATCCCACCAACGAGCTTTTGGTCTGTACAATATCTGGCCACTGTTTTGACAGATTGCTATCACCTGCTGAAATGGAGCCTGATGCTGAGCAGCAGCAAGGTGGTGCGGCAGATGAGGCAGAACCGTTTATGGGATCTGGCCGTTTTGCACGGGCTTATTTGCTGGGATACAATTGTGCTGATGAAAAGGAGCTTGAAGCTACTTTGAGGTTTTGCTGATCCCTATTGGCCCTTCTGGAGTGGATGATCTCATGTCTCAGCATTTACCTATTTAAGATCAAATAAATCGGGTTTCCTTTTCGTGTTTCTCTTGGCATAAGAATGTTTGATTAGATCTAGATTATGAAACTCTAATCGTCTTCTATATTAATAATTGTATGCTTAAATTTATAGTTGAAATTCCATTGATGAATTTTTCTT
+CAGAAGACATGTCTTTGACAAAGGTATACCATCTTTTCCNCCAACTTGGTTTGAGACATTTATTTGTTGTACCTCGTCCATCGCGTGTGCTTGGTTTGATAACCAGAAAAGATTTGTTGATTGAGGACACAGATGCGAATACATTAGAGCTTCAGGCAACTAGTAGTTCGGCATCCAGGTAAAAGATTGATGGCAAGGAATGCAGATGTGGAGAGCCCTCTGCTAAATGGTCTTCTGGTTCAGAATCAGATACCTGACTAATACCGTCTGCAGCCTTCCCGAATTCCTTTTTGCGTCCCATTTTCACTTGAAAATCATTCTTTATTATTTTTGTATTAATGTTGAAATAGGTTAGAGAACCCGATATTTTGGGGATGGAACGGGGTTGTAGACTGACAGTATACCCTAGAATTTTGTATATAAAGTATAAACTACAGCAAGCACAGAAAAAAATCATGAAAGCGCCCTTGTGATAATTATGATAGCAGAATTTAGACTGAT
+CTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTCGTCGTTTTGGGTTCTGCGGATCGGTGGATTCTGGTCGCGAATTCCGACGCTGTTCGTGGCGGCGAACCGAATTCCGGTCAACAAGCGAAGAAGATGAAGGTTTTCGTCAAGACTCTGAAGGGCTCTCACTTCGAAATCGAAGTCAAGCCCCAAGACACGGTTTCGGATGTGAAGAAAAATATTGAAACTGTTCAAGGTGGATGTCTATCCTGCCGCGCAGCAAATGCTTATTCATCAAGGGAAAGTTCTTAAGGATGGTACTACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTGATTATGATTTCCAAGAGTAAGACTCCGTCTGGTGAAGGATCTACTACTTCAGCTGCACCTTCAGCTAAGGCTCCAGCTCCTGCTCCTATATCTTCGGGCACGGCTGTGGAAGGTTCTGATGTCTATGGACAAGCAGCATCCAATCTGGTTGCTGGTAGCAACTTGGAAGACACAATTCAGCAAATTCTTGATGTTGGAGGAGGGACCTGGGATAGGGATACTGTAGTCCGGGCTCTTCGAGCTGCCTTCAACAACCCTGAGAGAGCTATTGAATATTTATATTCAGGAATCCCCGAGCAAGCTGAAGCTCCACCTGTGGGCCGTGTGCCTGCAAGTGCACAACCTGCAAATCCTCCAGCAGCTGCAGCTCCGCAAGCGGCACAACCTGCTCCTGTTACCTCAAGTGGGCCTAATGCTAATCCTTTAGACCTTTTTCCACAGGGCCTCCCAAATGTTGGTTCTGGTGGTGCTGGTGCTGGTGCTGGCTCTTTAGATTTTCTTCGCAACAGCCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAGAATCCTCATCTAATGAGATTGATTCGAGATCATCAAGCTGACTTCCTTCGCTTGATAAATGAGCCTGTGGAAGGTGGCGAAGGGAACCCATTGGGGCAGCTGGCTGGTGGCATACCACAAGCAATAACTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGTTTCGATCGTGCGATTGTATTGGAGGTGTTCTTCGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTCGACGAACAATAAATCTCTTCATGTTGCTAAATTATTTATCTGTTATCTTTTTAATGTTTATGGGGCCTTTGTTTTACTAGACGGTTTGATGAGGTAATACTTGAAAATGAAAAAAATCTCAAGTGGAGAAGGAACGTTTTTACCACCTCCACATTATTGCCTTTGTGGACAGTCTCAGTATTCATATACATAGTCGTTTGTCCTGTACTATTGGTATTGTGCATCCTTTTAACATGTGTAATTGTTTAGCTGCGCATCCTATTCTATATTTTCT
+CGTTCGCATTGTTCACTCACCATACGCACTTCCATTTTCATCTCCCACCGTCGCATTTTCTTCGGATCTGAAATTCCTCACCATGAATCGCCACCACGATCCCAATCCATTCGACGAAGACGAAGTCAATCCCTTCTCGAACGGTGCTGCTCCTGGATCTAAATCACGTATTCCACCATTGGCATCCGAACCACTGGGCTTTGGTCAAAGACATGATGCTACAGTTGATATTCCTTTGGATACCACAAATGAGCCTAAAAAAAAAGGTCAAGAGCTAGCAGCTTGGGAAGCAGATTTGAAAAGGAGAGAAAAGGATTTAAAAAGAAGAGAGGATGCTGTTTCTAGAGCTGGTGTGCCTGTTGATGATAAGAATTGGCCTCCGATTTTCCCAATTATTCACCATGATATTGCCAATGAGATACCGGTTCATGCTCAGAGGCTGCAATATTTGGCCTTTGCAAGTTGGTTAGGAATTGTTCTCTGCCTTGTTTTTAATGTAGTTGCTGTGATGGTCTGTTGGATCAGAGGCGGTGGTGTTAAAATTTTTTTCCTTGCGGTGATCTATGCTCTACTTGGTGTTCCCCTTTCATATGTGCTTTGGTACAGGCCCCTTTATCGTGCTATGAGGACGGATAGTGCACTGAAGTTTGGCTGGTTTTTCATGTTCTACTTGCTTCATATTGCATTTTGCATCTTTGCTGCAATTGCACCTCCAGTTGTTTTTCATGGGAAATCATTAACGGGCATCCTTGCAGCAACTGACGTCTTCTCAGACCATGTATTGGTTGGGATATTCTATTTGGTTGGATTTGGCCTGTTTTGCTTGGAGTCTCTTCTAAGCTTGTGGGTAATTCAGAAAATATACCTGTTTTTCCGGGGGCATAAGTGAGGCTACTCAGGATTTTGATCCATCGGCTTTTATGATATCAGTCACTTCCCGGCGTGGCTTAGTATATTCTTTCTTTTTGTCTATCCTCTTTTTTCGCTTGCAATATTTTCGTGTGATATTGTTTGTTGTTGTAGTCTAGTTCTTGTTACAGAGCTTAGTGTGTAATTTCCTGTGTAATGAATTCTGTGAAGTTTAGTAATTTTCTAGTGTAACAATAACCAAGCTTTGCTTTCGATAAGCATATATGTAGTGGATTTCCATAAGGAATTATTGTAGTGCTATTGTAGTTGTGAATAGTGACACCCCTCGGAGGTTTTCTATTTGTAAGACAGCACTGATGCAAACACTTTAGTTAAAATTCATGTAGGATCTATTCAATT
+CAGGATACACCTCCAGATGGGGAAAATATGACAGGAGCCTCCAAAGAGATGAATGTAGAATCTATTCCTTCCTTCTTTCAAGATATTATTGAGCGTATGGTTTCCTCACAAGTTATGACTGTGAAGCCTGATGCTTGCATTGTGGATTTCTATAATGAGGGCGATCACTCACATCCCTACAATTGGCCACATTGGTATGGAAGGCCTGTCTATATCCTTTCCCTGACAGAATGTGATATGACTTTAGGAAGAGTAATTTCCTCAGACCATCCAGGGGATTACAGGGGCTCTCTGAAGCTTTCTCTTCTCCCTGGGTCTCTTCTGTCAAGGCAAGGGAAATCTACTAATTTTGCTAGATATGCTATTCCTTCTATCCGCAAACAACGCATACTTGTTATTTTTACAAAGTCCCAACCAAAGAAGTCACTGTCAAGTGATGCTCAACGTTTTACCTCATCAGCAGCATCTTCTCATTGGGGTCCACCGCCAAGCCGTTCCCCCAATCACGTTCGTCATCATTTAGGCCACAAGCATTATGCTTCAGCTCCAACAAACGGAGGACTGCCAGCTCCACCAATCCGGCCACA
+AAGGACTAGTTGATTTGCTACATGTGTTCTGTGTTGTTCTTGCTTTGGTAAATGTGTCTCTAGTGAAAGCAGAAGATCCATACAAGTTCTACACATGGACAGTGACTTATGGAACTCTTTCTCCTCTGGGCAGTCCTCAACAAGTTATTCTGATCAATGGTCAGTTTCCTGGTCCAAGACTTGACTTGGTAACTAATGACAACGTGATTCTCAACCTCATCAACAAGCTGGATGAGCCATTCTTGCTCACATGGAATGGCATTAAGCAGAGGAAAAATTCTTGGCAAGATGGGGTTTTAGGAACTAACTGTCCCATTCCTCCAAACTCAAATTACACTTACAAGTTTCAGGCCAAGGATCAGATTGGCACTTATACATACTTTCCATCAACTAAGATGCATAAAGCTTCTGGAGGGTTTGGAGCTCTCAATGTTCTTCATAGATCTGTCATCCCAATCCCTTATCCAAACCCTGATGGAGATTTTACATTACTCATTGGTGATTGGTACAAAACTAGCCACAAGACATTAAGCCAAACATTGGATTCTGGGAAATCTCTTGCCTTTCCTGATGGCCTCCTTATCAATGGCCAGGCTCATTCTACCTTCACTGTTAACCAGGGAAAAACCTATATGTTCAGGATCTCAAATGTTGGTCTGTCAACCTCAATTAACTTCAGAATTCAGGGACATACCCTAAAACTAGTTGAGGTTGAAGGATCACACACTATCCAGAACGAATACGACTCGCTTGATGTGCATGTTGGCCAATCAGTTTCTGTGTTAGTAACCTTAAATCAACCTCCAAAGGACTATTACATCGTTGCCTCAACAAGATTTACCAAGACTGTTCTCACTACAACCTCAGTGCTACACTAAAATTCTCAGTCAGCCGCATCAGGATCCTTGCCTGCTCCCCCTGCTGACAAT
+ATTGAAATACGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTCGAATATAGCAAGGATATGCCTCCCCAAAAAATTAAAGTGCCTACAATTCAATCTGAAAGGCCTGCATACCCATCATCAAAGCCAAGGACAAAAGATTGGGATAAGTTGGAAGCTATGGTGAAAAAAGAGGAGAAAGAAGAAAAGCTGGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTATCAAAATGCTGATGAGGACATGCGGAGAGCAATGAGCAAGTCATTTCTGGAGTCAAATGGAACAGTGCTGTCAACGGATTGGAAAGAAGTGGGATCCAAGAAGGTGGAAGGAAGTCCTCCAGAAGGTATGGAATTGAAGAAATGGGAGTACTAATTCAGTACAAGCTGATGCTCATGAGAGTTCAAATTCACAAAAATAAATTCTGAGAAGGGAAACAAATTCTGTAATCTTAATGGTATCGGTTATTTTG
+TGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCCATGAGCAACATTGAGTCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAATACAGGAAATGATGGTGTCAGGAATCAATCAACTAATCCCTCAACGACTAATTCTGAAGCAACTTCCCCTGTTCCAAATACTAACCCACTTCCTAATCCTTGGTCCTCCACTGGAACTGGAGGTGCACAAGGCAACACCAGAAGGACAACTGCTGGTGGGGATGCTCGGCAGCAGGCACTCACTGGACTAGGAGGACTTGGTGTGCCAGATCTTGAAGGCATGATGGGTGGTATGCCAGATCCTGCTATGTTGACCCAATTAATGCAAAATCCAGCTATTTCACAAATGATGCAGAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGTCTCAATACTGAGCAGCGTGGCATGCCTGATCTAAACTCACTAAGAAGATGTGATGCAAAACCCAGAGTTTCTTCGCTTATTTTCCTCACCTGAGACACTGCAGCAACTCATGTCTTTCCAGCAATCTCTTATGTCTCAAGTTGG
+CAGCTCTATTCTCCACCAACACAAAAACGCTCACAAACTAGCTTCTTTGGAGAAAACATTAGAGACAATAGTGGCGGTGGTGGGAACAATGGCAGCCTCACTACAAGCAGCAGCTACTTTCATGCAACCAACCAAGTTTGGTCGCACCAACACTTTGCAGCTGAAATCTACTCAATCCATTTCTAAGGCTTTTGGGTTGGAGCCCTCTGCAGCTAAGGTCTCATGTTCCCTTCAGGCTGATTTCAAGGAGTTGGCTCACAAGTGTGTTGAAGCTACCAAGATTGCTGGGTTTGCTCTTGCCACCTCTGCTCTAGTTGTCTCTGGAGCAAGTGCGGAAGGTGCTCCGAAGAGGCTAACCTTCGATGAAATCCAGAGCAAGACATACATGGAAGTGAAGGGAACCGGAACCGCAAACCAGTGCCCCACCATTGAAGGGGGAGTGGAATCATTTTCCTTCAAGGCCGGGAAGTACAATGCCAAGAAGTTCTGCCTTGAACCCACTTCATTCACAGTGAAGGCAGAGGGAGTAGCCAAGAACGCCCCACTTGAGTTCCAAAACACCAAGCTCATGACACGTCTGACCTACACCCTCGACGAGATCGAAGGACCCTTTGAGGTTTCCTCTGATGGCACTGTCAAGTTCGAGGAGAAAGATGGCATTGACTACGCTGCTGTCACAGTTCAGCTTCCCGGTGGCGAGCGTGTTCCATTCCTTTTCACCATCAAACAGTTGGTAGCATCTGGGAAGCCAGACAGCTTCAGTGGGGAGTTTCTAGTGCCTTCATACCGTGGATCTTCCTTCTTGGACCCCAAGGGAAGAGGTGCGTCAACTGGTTATGACAATGCTGTCGCATTGCCTGCTGGTGGCAGAGGAGATGAGGAAGAACTTGCTAAGGAGAACAACCAGAGTGCTTCTTCATCCCAAGGGAAGATCACCTTGAGCGTGACACAGAGCAAGCCTGATACCGGTGAGGTGATTGGTGTGTTCGAGAGCATTCAGCCGTCCGACACTGATTTGGGAGCGAAAGCTCCCAAGGATGTGAAGATCCAGGGAGTTTGGTATGCTCAGCTCGAGTCATAGACAGCTTTATCTCTCTTCTGCTTTATTTTGTATTTTGTTGTAACTTCTCAGTGTTGCTGCCATTACCTTTGACACCACTGTCCCAGCATGAGAGTGTTATCCTTGTTTGTATGTATACTATCGACTTTCAATTATAATGCTCGAAAATGTCCAAGGTTT
+AGCAGTGTTCCCATGAAACCTTCCCACTGAGTCAACTCACTCTGTACATAAAACCCTCTTCATCATCATCATGGCTTCTCAAGTTTTTCTTCAGCAAGGGTTGTTACTGTTTGCCCCAAACCAATGTTCTCCAACCAAGCTCGGTGTATCTTCTTGCCTCGGTTCTCGTAACTTTCCGTTGATTTCCTCCACCTCAATTTCATGGCGTTGCAACAACCCTCTCTCTGCCAAACCCTCTTTTGTTGTCAGAGCTGACTCCAATGTCGACGCTGCTTCCGACAATGCTGGTGAAGTTCCAGAAGCTGAAGGTAGCGTTGATCAGGTTCCTGAAGATGGAGAAGCAGAACTAGCTTCGGATTCTGAGGTGGAGCAACCCAAGCCCCCTAGAAAGCAACGAGTCAAGCTTGGAGATGTTATGGGGATATTGAATCAGAGGGCAATTGAGGCATCGGAAAGCATGAGGCCGACTCCAGAAATTAGGACTGGAGATGTTGTGGAAATCAAACTGGAAGTTCCTGAGAACAAGCGTAGGTTGTCTATTTATAAAGGTATAGTCATCTCAAGACAAAATGCTGGTATTCACACAACTATTCGAATCCGAAGGATTATTGCTGGCACAGGGGTTGAGATTGTCTTCCCAATTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAACCACCGTAAAGTCAGAAGAGCAAGATTGTACTATTTAAGAGACAAGCTTCCCAGATTCTCCACTTTCAAATGATACGGTTACCACTTCTCATCCTGATCTTCTTCAAAGTAGTTGCTGATATTGCAGGGCCATATTTTGGTTATTTCGTTTTGTTGTGTTGTAGAATATATCATTTTTCTTCCTCTAAATCTATCCTCCGAGAATTGGAAACAAGTGTATGTATGTTGCCCTTGATAATATTTGAAATTTGAAGTGTTCTCCCTTGCATTCCTTGGTATAGGATAGAAAGCCAAGCTCCTAAACAAACATTACTAAATATGACAGTCTAAGGAATGAGCATGTGTATCGATACCAGTTAAGTGCATTGTGAATGTATTTTTTTTTTTTATCTCTATCCATAAAAAAAGGTATGTTCATTCTTG
+AAGAAACAAGAGAGAGAAGATGATTTAGATGAGCCAAAAACAAAGGAAAAACGGCAAAAGGGAGAGAAAGGAAAATCTCCATCAGGTTTTCTTGCTCCTCTCCAGCTATCTGATGCCCTTGTAAACTTCCTTGGTACTGGAGAAAGTGAATTATCAAGATCTGATGTCATAAAAAGAATGTGGGAATACATAAAAGGAAACGACCTTCAGGATCCTTCTGACAAGAGGAAAATATTATGCGACGACAAGCTGAAAGAACTCTTTGATGTGGACTCCTTTAACGGCTTCACCGTTACAAAACTGTTGACTCCTCATTTTATAAAGGCAGAGCAGTGAGTTGCTTGTGGAAATCGGTAATGTTGTCCAATTAGGTTTGGAAGGTCCTTCTTTTGTGGCCTTTTGGCATTGTCTGCCAACACGAGGAATAGGAATTAGGAACATGACAGATTTTCAGTAAATTTTTCTCCAAGAATTTAATGTTACGTGACCATTACTTTGTTTTTTTTAATATCACGTTTTGTCACTTGGCAGTTGAAATTTTTGTATATTTTCAGTTCCTGAAGCTGCAAGGATAATGCTGACTTCTTACTCTACTCTGCATTTGCTCATATGAGGCACTACACATATCCATAATACATGAATAAATTTGCAGTATTGAA
+CATTTGTTCCATTTGCTCAGGCATTTGCAGCTGTACTTACAGCTGTCCTTACTGGTTCTCTCTATTATGTGGCTGCCTCTCCTAAAGATCCTACTTATATTGTGGCACCTGTTTTACAGTCTCGCTCTGGTCGTCAAGATTTGAAAAAGCTATTTGAAGCCTGGTATGAGAAACGGCAAATGAAAAAAATATATTCACCACTTCTGGAAGGACTACTAGCTCTCTACCTAGGATTTGAGTGGATCCAAACGAATAACATTCTTGCTCCCATTATCACACATGGCATATACTCCACAGTTATATTGGGACATGGCCTTTGGAAGATAAACGACCACCGGCGAAGACTACGTCAAAGAATCCAACAGCTCAAATCTGAAGAACAAAATTCCCAGTAGACTTTGAAATACCTTCCATGTCTGGCTGTGATACAAAAAATGTATATGTATGTATTAGAGCTGCTAATTATGTAAAGAGAAAAGATGTATATACTTGTGTTAGCTGAGGTCTCGTACACACTGAATATTCAGGTTTTGTTCACCATTTTCTAATTTCGAGTTACTATATGTAGTGTTTTCTAATAAAATGAAATAAAATCCCCAAGTTGGGTTGATTTAAATT
+GAGACCTGTTATGATTCACAGAGCCATTCTAGGATCTGTTGAGCGCATGTTTGCCATTCTTTTAGAGCACTACAAGGGTAAATGGCCCTTGTGGCTCAGTCCTCGTCAAGCAATTGTATGTCCTGTGTCAGAGAAATCACAAGCTTATGCACTGCAGGTGCGAGATCAGATCCACCAAGCAGGATATCACGTTGATGCTGATACAACTGATCGGAAGATTCAGAAGAAGGTACGGGAAGCTCAATTAGCGCAGTACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGGTGAGTGTACGGGTTAGAGATAAAGCAGACCATAGCGTTATGAGTATTGAGAATCTACTCAAACACTTCAGCGACGAAGTTGCAGCTTTTCATTGATACTTCTCTTGTGAAAACTGTTGGAAGCAAATTTTACCCCCACTCACCTAGTTTGTTCACACTTTGTGTGCATTATTTATATTTTCAGCCTGACAATTTACATTTAGATGATTTGGGTAATGACTGTATTTTCTATGTGAATTTTGGAGCGCACTGATATCGATCCATTGTTTGAAAAGCTGAGAGAAAGTGTAATCTTTTATTTTCTGTCTACATTTTAATTATGTTTTTCGTTAGTTTTTTCCTTTTATATATTTGTTTGTTAAATTGAAGGAAACTATTGTTGG
+GGCACCAGGGATCTTACAAGGCTGGATCTCCATAATAACAAGTTGACAGGGCCTATTCCTCCTCAAATTGGACGGTTGAAGCGTCTTAAAATACTCAATTTGAGGTGGAACAAACTACAGGATGCAATTCCTCCAGAAATTGGCGAGCTTAAAAGTTTAACACATCTGTACCTAAGCTTCAATAGTTTCAAGGGAGAAATTCCCAAAGAGCTAGCAAATCTTCCAGACCTTCGCTACCTTTATCTTCATGAAAACCGTTTAATTGGTAGGATACCACCTGAGTTGGGCACTCTACAAAACCTTCGGCACTTGGATGCTGGTAACAATCATTTGGTGGGTACCATAAGGGAACTCATTCGTATTGAAGGTTGCTTTCCAGCACTCCGCAATCTATATCTAAACAATAATTATTTTACTGGAGGAATGCCTGCACAACTTGCCAACTTATCCAGTCTTGAGATCTTGTACCTGTCCTACAATAAAATGTCAGGAGTTATACCATCTAGCCTTGCTCATATTCCTAAATTGACATACTTGTACTTGGATCACAATCAGTTTTCGGGGAGAATTCCCGAACCCTTTTACAAACATTCATTTTTGAAAGAAATGTACATCGAGGGAAATGCATTCCGGCCTGGTGTTAAACCCATTGGTTTCCATAAAGTGCTTGAAGTTTCTGATTCAGACTTCCTTGTTTAATGAAACTCAACATATTTAGTTTTTTAGGAAGTTTACGTGTATAATTAATGAAACAATAGCTCCTCTGATTTTCTCAATGAAAATTGCTATATGGGTAATTCAATTTTTGTCACGGCTGTCTTGTCAGAAGAATCAATAAATAATAGTGTTTTTTAACTCT
+GGAAATGAGCACAATGTTAAGCAGATCAAGAATTACCGCCAAAAGGTTGAGGAGGAACTCTCCAAAATTTGTGGTGACATCCTGACTATTATAGACCAGCATCTAATTCCTTCTTCCGCCTCAGCAGAAGCTAGTGTTTTCTACTATAAGATGAAAGGTGATTATTATCGGTATCTTGCTGAGTTCAAGACCGACCAAGAAAGGAAAGAGGCAGCCGAGCAGTCACTCAAGGGATATGAGGCTGCTTCAGCCACTGCCAACACCGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCTCTCAACTTCTCTGTCTTTTATTACGAGATCATGAACTCTCCTGAAAGGGCCTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCAGAGTTGGACACCTTGAGTGAAGAGTCATACAAGGACAGTACTTTGATCATGCAGTTGTTGAGAGACAACCTGACTCTCTGGACATCCGATTTGCCAGAAGATGGAGGCGAGGAGAACATAAAAGCTGAAGAAGCCAAACCTACTGAGCCTGAGAATTAACTAGGTTCTTTTGGATCTTTGGCCCTGATTCAATAGTCAGATTTTTGTGGTGCTCTGCAAAGAGGGCATTTTTCAGCTTTTCTTGCAATGGATTTGGAATGGACAATATGAGCTGTCGCCACTTCATAATTACCAACCAAAGCCAAAAGATCTGAGCCTGCCTTTTCTTTATTTCTTTAAATTGTTTTTCTTTCTTACTGCCTTTATCTATTTTAAGCAAAGTGGTCGGTTGAAACAATGGATAATTCACATTTAAATCATAAGAATCTTTTTCAAGTGTTCATTACATCCGTTTTGGTTCGTTTAAAATATTGTTTCCTATGCGCTCCTAGATGGGATACAGTACAAGTATTCAACTGTTGAGCAGAGATTTTTACCTCAAAAAATTAGT
+AGACACAACATCATAGAAACAGATCAACAACACATTAAAATTAGCATGGATCATAGCTTACGTTGTTTTGGGTCGACACTACCCAAAACTCTTCTTCAGTTTCTGTTATCACCTTCACTCCTTCTCTTCATCTCCTTCTTCAGTTTCTCCAACGCAGCCTTCGACCTCGCCACCATACCCTTCAACGATGCCTATTCACCCCTCTTTGGGGATGGCAACCTTGTCCGCTCCGCCGATGGCAACGGTGTTCAACTCCTCCTCGATCGCTTCACCGGTTCTGGTTTCGTTTCTTCCAATATGTACCAGCATGGATTCTTCAGCGCCAATATCAAGCTACCATCGAATTACAGCGCTGGTATTTGCGTGGCCTTTTATACATCAAACAATGAGATGTTTGAGAAGACACACGATGAGTTAGACTTTGAATTCTTAGGTAATATAGCCGGAAAGCCTTGGAGGTTTCAGACAAACTTGTACGGCAATGGCAGCACCAACCGTGGCCGTGAGGAGCGGTACCGCCTCTGGTTTGATCCAACCAAGGGATTCCATAGATACAGCATTCTATGGACAGCTAAGAACATCATATTTTACATAGATGAGGTTCCAATTAGAGAAATTATAAGAAGTGAAGAAATGGGAGCTGATTACCCAGCAAAGCCAATGGCATTATACGCCACAATATGGGATGCATCAAATTGGGCCACATCGGGTGGAAA

data/spec/dummy/Rakefile

@@ -0,0 +1,7 @@
+#!/usr/bin/env rake
+# Add your own tasks in files placed in lib/tasks ending in .rake,
+# for example lib/tasks/capistrano.rake, and they will automatically be available to Rake.
+
+require File.expand_path('../config/application', __FILE__)
+
+Dummy::Application.load_tasks

data/spec/dummy/app/assets/javascripts/application.js

@@ -0,0 +1,9 @@
+// This is a manifest file that'll be compiled into including all the files listed below.
+// Add new JavaScript/Coffee code in separate files in this directory and they'll automatically
+// be included in the compiled file accessible from http://example.com/assets/application.js
+// It's not advisable to add code directly here, but if you do, it'll appear at the bottom of the
+// the compiled file.
+//
+//= require jquery
+//= require jquery_ujs
+//= require_tree .

data/spec/dummy/app/assets/stylesheets/application.css

@@ -0,0 +1,7 @@
+/*
+ * This is a manifest file that'll automatically include all the stylesheets available in this directory
+ * and any sub-directories. You're free to add application-wide styles to this file and they'll appear at
+ * the top of the compiled file, but it's generally better to create a new file per style scope.
+ *= require_self
+ *= require_tree . 
+*/

data/spec/dummy/app/controllers/application_controller.rb

@@ -0,0 +1,3 @@
+class ApplicationController < ActionController::Base
+  protect_from_forgery
+end

data/spec/dummy/app/helpers/application_helper.rb

@@ -0,0 +1,2 @@
+module ApplicationHelper
+end

data/spec/dummy/app/models/blast.rb

@@ -0,0 +1,2 @@
+class Blast < ActiveRecord::Base
+end

data/spec/dummy/app/views/layouts/application.html.erb

@@ -0,0 +1,14 @@
+<!DOCTYPE html>
+<html>
+<head>
+  <title>Dummy</title>
+  <%= stylesheet_link_tag    "application" %>
+  <%= javascript_include_tag "application" %>
+  <%= csrf_meta_tags %>
+</head>
+<body>
+
+<%= yield %>
+
+</body>
+</html>

data/spec/dummy/config/application.rb

@@ -0,0 +1,46 @@
+require File.expand_path('../boot', __FILE__)
+
+require 'rails/all'
+
+Bundler.require
+require "quorum"
+require "jquery-rails"
+
+module Dummy
+  class Application < Rails::Application
+    # Settings in config/environments/* take precedence over those specified here.
+    # Application configuration should go into files in config/initializers
+    # -- all .rb files in that directory are automatically loaded.
+
+    # Custom directories with classes and modules you want to be autoloadable.
+    # config.autoload_paths += %W(#{config.root}/extras)
+
+    # Only load the plugins named here, in the order given (default is alphabetical).
+    # :all can be used as a placeholder for all plugins not explicitly named.
+    # config.plugins = [ :exception_notification, :ssl_requirement, :all ]
+
+    # Activate observers that should always be running.
+    # config.active_record.observers = :cacher, :garbage_collector, :forum_observer
+
+    # Set Time.zone default to the specified zone and make Active Record auto-convert to this zone.
+    # Run "rake -D time" for a list of tasks for finding time zone names. Default is UTC.
+    # config.time_zone = 'Central Time (US & Canada)'
+
+    # The default locale is :en and all translations from config/locales/*.rb,yml are auto loaded.
+    # config.i18n.load_path += Dir[Rails.root.join('my', 'locales', '*.{rb,yml}').to_s]
+    # config.i18n.default_locale = :de
+
+    # Configure the default encoding used in templates for Ruby 1.9.
+    config.encoding = "utf-8"
+
+    # Configure sensitive parameters which will be filtered from the log file.
+    config.filter_parameters += [:password]
+
+    # Enable the asset pipeline
+    config.assets.enabled = true
+
+    # Version of your assets, change this if you want to expire all your assets
+    config.assets.version = '1.0'
+  end
+end
+

data/spec/dummy/config/boot.rb

@@ -0,0 +1,10 @@
+require 'rubygems'
+gemfile = File.expand_path('../../../../Gemfile', __FILE__)
+
+if File.exist?(gemfile)
+  ENV['BUNDLE_GEMFILE'] = gemfile
+  require 'bundler'
+  Bundler.setup
+end
+
+$:.unshift File.expand_path('../../../../lib', __FILE__)

data/spec/dummy/config/environment.rb

@@ -0,0 +1,20 @@
+# Load the rails application
+require File.expand_path('../application', __FILE__)
+
+# Initialize the rails application
+Dummy::Application.initialize!
+
+## Explicitly remove AR transactions during tests ##
+if Rails.env.test?
+  # Force the loading of AR stuff
+  ActiveRecord::Base.connection.execute('SELECT 1')
+
+  # Remove transactions
+  ActiveRecord::ConnectionAdapters::Mysql2Adapter.class_eval do
+    def begin_db_transaction
+    end
+
+    def commit_db_transaction
+    end
+  end
+end

data/spec/dummy/config/environments/development.rb

@@ -0,0 +1,30 @@
+Dummy::Application.configure do
+  # Settings specified here will take precedence over those in config/application.rb
+
+  # In the development environment your application's code is reloaded on
+  # every request.  This slows down response time but is perfect for development
+  # since you don't have to restart the web server when you make code changes.
+  config.cache_classes = false
+
+  # Log error messages when you accidentally call methods on nil.
+  config.whiny_nils = true
+
+  # Show full error reports and disable caching
+  config.consider_all_requests_local       = true
+  config.action_controller.perform_caching = false
+
+  # Don't care if the mailer can't send
+  config.action_mailer.raise_delivery_errors = false
+
+  # Print deprecation notices to the Rails logger
+  config.active_support.deprecation = :log
+
+  # Only use best-standards-support built into browsers
+  config.action_dispatch.best_standards_support = :builtin
+
+  # Do not compress assets
+  config.assets.compress = false
+
+  # Expands the lines which load the assets
+  config.assets.debug = true
+end

data/spec/dummy/config/environments/production.rb

@@ -0,0 +1,60 @@
+Dummy::Application.configure do
+  # Settings specified here will take precedence over those in config/application.rb
+
+  # Code is not reloaded between requests
+  config.cache_classes = true
+
+  # Full error reports are disabled and caching is turned on
+  config.consider_all_requests_local       = false
+  config.action_controller.perform_caching = true
+
+  # Disable Rails's static asset server (Apache or nginx will already do this)
+  config.serve_static_assets = false
+
+  # Compress JavaScripts and CSS
+  config.assets.compress = true
+
+  # Don't fallback to assets pipeline if a precompiled asset is missed
+  config.assets.compile = false
+
+  # Generate digests for assets URLs
+  config.assets.digest = true
+
+  # Defaults to Rails.root.join("public/assets")
+  # config.assets.manifest = YOUR_PATH
+
+  # Specifies the header that your server uses for sending files
+  # config.action_dispatch.x_sendfile_header = "X-Sendfile" # for apache
+  # config.action_dispatch.x_sendfile_header = 'X-Accel-Redirect' # for nginx
+
+  # Force all access to the app over SSL, use Strict-Transport-Security, and use secure cookies.
+  # config.force_ssl = true
+
+  # See everything in the log (default is :info)
+  # config.log_level = :debug
+
+  # Use a different logger for distributed setups
+  # config.logger = SyslogLogger.new
+
+  # Use a different cache store in production
+  # config.cache_store = :mem_cache_store
+
+  # Enable serving of images, stylesheets, and JavaScripts from an asset server
+  # config.action_controller.asset_host = "http://assets.example.com"
+
+  # Precompile additional assets (application.js, application.css, and all non-JS/CSS are already added)
+  # config.assets.precompile += %w( search.js )
+
+  # Disable delivery errors, bad email addresses will be ignored
+  # config.action_mailer.raise_delivery_errors = false
+
+  # Enable threaded mode
+  # config.threadsafe!
+
+  # Enable locale fallbacks for I18n (makes lookups for any locale fall back to
+  # the I18n.default_locale when a translation can not be found)
+  config.i18n.fallbacks = true
+
+  # Send deprecation notices to registered listeners
+  config.active_support.deprecation = :notify
+end

data/spec/dummy/config/environments/test.rb

@@ -0,0 +1,42 @@
+Dummy::Application.configure do
+  # Settings specified here will take precedence over those in config/application.rb
+
+  # The test environment is used exclusively to run your application's
+  # test suite.  You never need to work with it otherwise.  Remember that
+  # your test database is "scratch space" for the test suite and is wiped
+  # and recreated between test runs.  Don't rely on the data there!
+  config.cache_classes = true
+
+  # Configure static asset server for tests with Cache-Control for performance
+  config.serve_static_assets = true
+  config.static_cache_control = "public, max-age=3600"
+
+  # Log error messages when you accidentally call methods on nil
+  config.whiny_nils = true
+
+  # Show full error reports and disable caching
+  config.consider_all_requests_local       = true
+  config.action_controller.perform_caching = false
+
+  # Raise exceptions instead of rendering exception templates
+  config.action_dispatch.show_exceptions = false
+
+  # Disable request forgery protection in test environment
+  config.action_controller.allow_forgery_protection    = false
+
+  # Tell Action Mailer not to deliver emails to the real world.
+  # The :test delivery method accumulates sent emails in the
+  # ActionMailer::Base.deliveries array.
+  config.action_mailer.delivery_method = :test
+
+  # Use SQL instead of Active Record's schema dumper when creating the test database.
+  # This is necessary if your schema can't be completely dumped by the schema dumper,
+  # like if you have constraints or database-specific column types
+  # config.active_record.schema_format = :sql
+
+  # Print deprecation notices to the stderr
+  config.active_support.deprecation = :stderr
+
+  # Allow pass debug_assets=true as a query parameter to load pages with unpackaged assets
+  config.assets.allow_debugging = true
+end

data/spec/dummy/config/initializers/backtrace_silencers.rb

@@ -0,0 +1,7 @@
+# Be sure to restart your server when you modify this file.
+
+# You can add backtrace silencers for libraries that you're using but don't wish to see in your backtraces.
+# Rails.backtrace_cleaner.add_silencer { |line| line =~ /my_noisy_library/ }
+
+# You can also remove all the silencers if you're trying to debug a problem that might stem from framework code.
+# Rails.backtrace_cleaner.remove_silencers!

data/spec/dummy/config/initializers/inflections.rb

@@ -0,0 +1,10 @@
+# Be sure to restart your server when you modify this file.
+
+# Add new inflection rules using the following format
+# (all these examples are active by default):
+# ActiveSupport::Inflector.inflections do |inflect|
+#   inflect.plural /^(ox)$/i, '\1en'
+#   inflect.singular /^(ox)en/i, '\1'
+#   inflect.irregular 'person', 'people'
+#   inflect.uncountable %w( fish sheep )
+# end

data/spec/dummy/config/initializers/mime_types.rb

@@ -0,0 +1,5 @@
+# Be sure to restart your server when you modify this file.
+
+# Add new mime types for use in respond_to blocks:
+# Mime::Type.register "text/richtext", :rtf
+# Mime::Type.register_alias "text/html", :iphone

data/spec/dummy/config/initializers/quorum_initializer.rb

@@ -0,0 +1,36 @@
+## Quorum Settings ##
+#
+# DO NOT edit this file directly. To configure Quorum edit
+# config/quorum_settings.yml.
+
+## Load Quorum Setttings ##
+settings = YAML.load_file(
+  "#{::Rails.root.to_s}/config/quorum_settings.yml"
+)[::Rails.env.to_s]
+
+## Sub %{RAILS_ROOT} ##
+settings.keys.each do |k|
+  settings[k.to_s].each_value do |v| 
+    if v.kind_of?(String)
+      v.to_s.gsub!('%{RAILS_ROOT}', ::Rails.root.to_s)
+    end
+  end
+end
+
+blast = settings['blast']
+
+## Quorum Blast Settings ##
+Quorum.blast_remote      = blast['remote']
+Quorum.blast_ssh_host    = blast['ssh_host']
+Quorum.blast_ssh_user    = blast['ssh_user']
+Quorum.blast_ssh_options = blast['ssh_options']
+Quorum.blast_script      = blast['script']
+Quorum.blast_log_dir     = blast['log_dir']
+Quorum.blast_tmp_dir     = blast['tmp_dir']
+Quorum.blast_db          = blast['blast_db']
+Quorum.tblastn           = blast['tblastn']
+Quorum.blastp            = blast['blastp']
+Quorum.blastn            = blast['blastn']
+Quorum.blastx            = blast['blastx']
+Quorum.blast_threads     = blast['blast_threads']
+

data/spec/dummy/config/initializers/resque.rb

@@ -0,0 +1 @@
+Resque.inline = Rails.env.test?

data/spec/dummy/config/initializers/secret_token.rb

@@ -0,0 +1,7 @@
+# Be sure to restart your server when you modify this file.
+
+# Your secret key for verifying the integrity of signed cookies.
+# If you change this key, all old signed cookies will become invalid!
+# Make sure the secret is at least 30 characters and all random,
+# no regular words or you'll be exposed to dictionary attacks.
+Dummy::Application.config.secret_token = '2ee8430176b2466564371c329eb53df3dec97f987d049af74e9655d677499d25ec82bf6e58acc44a1342c5a014618eaa188b6f28324843385d965c065052b95f'

data/spec/dummy/config/initializers/session_store.rb

@@ -0,0 +1,8 @@
+# Be sure to restart your server when you modify this file.
+
+Dummy::Application.config.session_store :cookie_store, key: '_dummy_session'
+
+# Use the database for sessions instead of the cookie-based default,
+# which shouldn't be used to store highly confidential information
+# (create the session table with "rails generate session_migration")
+# Dummy::Application.config.session_store :active_record_store

data/spec/dummy/config/initializers/wrap_parameters.rb

@@ -0,0 +1,14 @@
+# Be sure to restart your server when you modify this file.
+#
+# This file contains settings for ActionController::ParamsWrapper which
+# is enabled by default.
+
+# Enable parameter wrapping for JSON. You can disable this by setting :format to an empty array.
+ActiveSupport.on_load(:action_controller) do
+  wrap_parameters format: [:json]
+end
+
+# Disable root element in JSON by default.
+ActiveSupport.on_load(:active_record) do
+  self.include_root_in_json = false
+end

data/spec/dummy/config/locales/en.yml

@@ -0,0 +1,5 @@
+# Sample localization file for English. Add more files in this directory for other locales.
+# See https://github.com/svenfuchs/rails-i18n/tree/master/rails%2Flocale for starting points.
+
+en:
+  hello: "Hello world"

data/spec/dummy/config/locales/quorum.en.yml

@@ -0,0 +1,8 @@
+en:
+  quorum:
+    jobs:
+      errors:
+      notices:
+        data_not_found: "The data you requested is unavailable. Please check your URL and try again."
+      alerts:
+

data/spec/dummy/config/quorum_settings.yml

@@ -0,0 +1,145 @@
+# Quorum Settings
+#
+# ==> General
+# Quorum initializer safely substitutes %{RAILS_ROOT} with ::Rails.root.to_s.
+# 
+# ==> NCBI BLAST+ Settings
+# blast:
+#   remote: true to execute script on remote machine via
+#     Net::SSH. false to execute locally via Kernel#system.
+#     See Net::SSH for more information.
+#     http://net-ssh.github.com/ssh/v2/api/index.html
+#
+#   ssh_host: Net::SSH.start() host.
+#
+#   ssh_user: Net::SSH.start() user.
+#
+#   ssh_options: Net::SSH.start() optional params.
+#     See http://net-ssh.github.com/ssh/v2/api/classes/Net/SSH.html#M000002
+#     for a complete list of options.
+#     Example Usage:
+#     ssh_options:
+#       password: "secret password"
+#       port: 8888
+#
+#   script: Absolute path to search script.
+#
+#   log_dir: Absolute path to log file directory.
+#
+#   tmp_dir: Absolute path to tmp file directory.
+#
+#   blast_db: Absolute path to NCBI Blast database directory.
+#     Execute the rake task below to build your Blast DB.
+#     rake quorum:blastdb:build
+#
+#   blastn: Collection of Blast DBs under the parent blast_db
+#     to use with blastn.
+#     Example Usage:
+#     blastn:
+#       "Display name": blastn_database_name
+#       "A really cool genome": really_cool_genome
+#
+#   blastx: Collection of Blast DBs under the parent blast_db
+#     to use with blastx.
+#     Example Usage:
+#     blastx:
+#       "Display name": blastx_database_name
+#       "A really cool genome": really_cool_genome
+#
+#   tblastn: Collection of Blast DBs under the parent blast_db
+#     to use with tblastn.
+#     Example Usage:
+#     tblastn:
+#       "Display name": tblastn_database_name
+#       "A really cool genome": really_cool_genome
+#
+#   blastp: Collection of Blast DBs under the parent blast_db
+#     to use with blastp.
+#     Example Usage:
+#     blastp:
+#       "Display name": blastp_database_name
+#       "A really cool genome": really_cool_genome
+#
+#   blast_threads: Number of Blast threads. >= 1
+#     Defaults to 1.
+
+development:
+  blast:
+    remote: false
+    ssh_host:
+    ssh_user:
+    ssh_options:
+      # Example:
+      # password: "secret password"
+      # port: 8888
+    script: "%{RAILS_ROOT}/quorum/bin/search"
+    log_dir: "%{RAILS_ROOT}/quorum/log"
+    tmp_dir: "%{RAILS_ROOT}/quorum/tmp"
+    blast_db: "%{RAILS_ROOT}/quorum/blastdb"
+    blastn:
+      "camptotheca_acuminata-20101112": camptotheca_acuminata-20101112
+      "colchicum_autumnale-20101112": colchicum_autumnale-20101112
+    blastx:
+      "camptotheca_acuminata-20101112": camptotheca_acuminata-20101112
+      "colchicum_autumnale-20101112": colchicum_autumnale-20101112
+    tblastn:
+      "camptotheca_acuminata-20101112": camptotheca_acuminata-20101112
+      "colchicum_autumnale-20101112": colchicum_autumnale-20101112
+    blastp:
+      "camptotheca_acuminata-20101112": camptotheca_acuminata-20101112
+      "colchicum_autumnale-20101112": colchicum_autumnale-20101112
+    blast_threads: 4
+
+test:
+  blast:
+    remote: false
+    ssh_host:
+    ssh_user:
+    ssh_options:
+      # Example:
+      # password: "secret password"
+      # port: 8888
+    script: "%{RAILS_ROOT}/quorum/bin/search"
+    log_dir: "%{RAILS_ROOT}/quorum/log"
+    tmp_dir: "%{RAILS_ROOT}/quorum/tmp"
+    blast_db: "%{RAILS_ROOT}/quorum/blastdb"
+    blastn:
+      "tmp": test
+    blastx:
+      "tmp": test
+    tblastn:
+      "tmp": test
+    blastp:
+      "tmp": test
+    blast_threads:
+
+production:
+  blast:
+    remote: true
+    ssh_host:
+    ssh_user:
+    ssh_options:
+      # Example:
+      # password: "secret password"
+      # port: 8888
+    script:
+    log_dir:
+    tmp_dir:
+    blast_db:
+    blastn:
+      # Example:
+      # "Display name": blastn_database_name
+      # "A really cool genome": really_cool_genome
+    blastx:
+      # Example:
+      # "Display name": blastx_database_name
+      # "A really cool genome": really_cool_genome
+    tblastn:
+      # Example:
+      # "Display name": tblastn_database_name
+      # "A really cool genome": really_cool_genome
+    blastp:
+      # Example:
+      # "Display name": blastp_database_name
+      # "A really cool genome": really_cool_genome
+    blast_threads: