pnmatrix 1.2.4
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- checksums.yaml +7 -0
- data/ext/nmatrix/binary_format.txt +53 -0
- data/ext/nmatrix/data/complex.h +388 -0
- data/ext/nmatrix/data/data.cpp +274 -0
- data/ext/nmatrix/data/data.h +651 -0
- data/ext/nmatrix/data/meta.h +64 -0
- data/ext/nmatrix/data/ruby_object.h +386 -0
- data/ext/nmatrix/extconf.rb +70 -0
- data/ext/nmatrix/math/asum.h +99 -0
- data/ext/nmatrix/math/cblas_enums.h +36 -0
- data/ext/nmatrix/math/cblas_templates_core.h +507 -0
- data/ext/nmatrix/math/gemm.h +241 -0
- data/ext/nmatrix/math/gemv.h +178 -0
- data/ext/nmatrix/math/getrf.h +255 -0
- data/ext/nmatrix/math/getrs.h +121 -0
- data/ext/nmatrix/math/imax.h +82 -0
- data/ext/nmatrix/math/laswp.h +165 -0
- data/ext/nmatrix/math/long_dtype.h +62 -0
- data/ext/nmatrix/math/magnitude.h +54 -0
- data/ext/nmatrix/math/math.h +751 -0
- data/ext/nmatrix/math/nrm2.h +165 -0
- data/ext/nmatrix/math/rot.h +117 -0
- data/ext/nmatrix/math/rotg.h +106 -0
- data/ext/nmatrix/math/scal.h +71 -0
- data/ext/nmatrix/math/trsm.h +336 -0
- data/ext/nmatrix/math/util.h +162 -0
- data/ext/nmatrix/math.cpp +1368 -0
- data/ext/nmatrix/nm_memory.h +60 -0
- data/ext/nmatrix/nmatrix.cpp +285 -0
- data/ext/nmatrix/nmatrix.h +476 -0
- data/ext/nmatrix/ruby_constants.cpp +151 -0
- data/ext/nmatrix/ruby_constants.h +106 -0
- data/ext/nmatrix/ruby_nmatrix.c +3130 -0
- data/ext/nmatrix/storage/common.cpp +77 -0
- data/ext/nmatrix/storage/common.h +183 -0
- data/ext/nmatrix/storage/dense/dense.cpp +1096 -0
- data/ext/nmatrix/storage/dense/dense.h +129 -0
- data/ext/nmatrix/storage/list/list.cpp +1628 -0
- data/ext/nmatrix/storage/list/list.h +138 -0
- data/ext/nmatrix/storage/storage.cpp +730 -0
- data/ext/nmatrix/storage/storage.h +99 -0
- data/ext/nmatrix/storage/yale/class.h +1139 -0
- data/ext/nmatrix/storage/yale/iterators/base.h +143 -0
- data/ext/nmatrix/storage/yale/iterators/iterator.h +131 -0
- data/ext/nmatrix/storage/yale/iterators/row.h +450 -0
- data/ext/nmatrix/storage/yale/iterators/row_stored.h +140 -0
- data/ext/nmatrix/storage/yale/iterators/row_stored_nd.h +169 -0
- data/ext/nmatrix/storage/yale/iterators/stored_diagonal.h +124 -0
- data/ext/nmatrix/storage/yale/math/transpose.h +110 -0
- data/ext/nmatrix/storage/yale/yale.cpp +2074 -0
- data/ext/nmatrix/storage/yale/yale.h +203 -0
- data/ext/nmatrix/types.h +55 -0
- data/ext/nmatrix/util/io.cpp +279 -0
- data/ext/nmatrix/util/io.h +115 -0
- data/ext/nmatrix/util/sl_list.cpp +627 -0
- data/ext/nmatrix/util/sl_list.h +144 -0
- data/ext/nmatrix/util/util.h +78 -0
- data/lib/nmatrix/blas.rb +378 -0
- data/lib/nmatrix/cruby/math.rb +744 -0
- data/lib/nmatrix/enumerate.rb +253 -0
- data/lib/nmatrix/homogeneous.rb +241 -0
- data/lib/nmatrix/io/fortran_format.rb +138 -0
- data/lib/nmatrix/io/harwell_boeing.rb +221 -0
- data/lib/nmatrix/io/market.rb +263 -0
- data/lib/nmatrix/io/point_cloud.rb +189 -0
- data/lib/nmatrix/jruby/decomposition.rb +24 -0
- data/lib/nmatrix/jruby/enumerable.rb +13 -0
- data/lib/nmatrix/jruby/error.rb +4 -0
- data/lib/nmatrix/jruby/math.rb +501 -0
- data/lib/nmatrix/jruby/nmatrix_java.rb +840 -0
- data/lib/nmatrix/jruby/operators.rb +283 -0
- data/lib/nmatrix/jruby/slice.rb +264 -0
- data/lib/nmatrix/lapack_core.rb +181 -0
- data/lib/nmatrix/lapack_plugin.rb +44 -0
- data/lib/nmatrix/math.rb +953 -0
- data/lib/nmatrix/mkmf.rb +100 -0
- data/lib/nmatrix/monkeys.rb +137 -0
- data/lib/nmatrix/nmatrix.rb +1172 -0
- data/lib/nmatrix/rspec.rb +75 -0
- data/lib/nmatrix/shortcuts.rb +1163 -0
- data/lib/nmatrix/version.rb +39 -0
- data/lib/nmatrix/yale_functions.rb +118 -0
- data/lib/nmatrix.rb +28 -0
- data/spec/00_nmatrix_spec.rb +892 -0
- data/spec/01_enum_spec.rb +196 -0
- data/spec/02_slice_spec.rb +407 -0
- data/spec/03_nmatrix_monkeys_spec.rb +80 -0
- data/spec/2x2_dense_double.mat +0 -0
- data/spec/4x4_sparse.mat +0 -0
- data/spec/4x5_dense.mat +0 -0
- data/spec/blas_spec.rb +215 -0
- data/spec/elementwise_spec.rb +311 -0
- data/spec/homogeneous_spec.rb +100 -0
- data/spec/io/fortran_format_spec.rb +88 -0
- data/spec/io/harwell_boeing_spec.rb +98 -0
- data/spec/io/test.rua +9 -0
- data/spec/io_spec.rb +159 -0
- data/spec/lapack_core_spec.rb +482 -0
- data/spec/leakcheck.rb +16 -0
- data/spec/math_spec.rb +1363 -0
- data/spec/nmatrix_yale_resize_test_associations.yaml +2802 -0
- data/spec/nmatrix_yale_spec.rb +286 -0
- data/spec/rspec_monkeys.rb +56 -0
- data/spec/rspec_spec.rb +35 -0
- data/spec/shortcuts_spec.rb +474 -0
- data/spec/slice_set_spec.rb +162 -0
- data/spec/spec_helper.rb +172 -0
- data/spec/stat_spec.rb +214 -0
- data/spec/test.pcd +20 -0
- data/spec/utm5940.mtx +83844 -0
- metadata +295 -0
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# = NMatrix
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#
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# A linear algebra library for scientific computation in Ruby.
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# NMatrix is part of SciRuby.
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#
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# NMatrix was originally inspired by and derived from NArray, by
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# Masahiro Tanaka: http://narray.rubyforge.org
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#
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# == Copyright Information
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#
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# SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
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# NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
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#
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# Please see LICENSE.txt for additional copyright notices.
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#
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# == Contributing
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#
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# By contributing source code to SciRuby, you agree to be bound by
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# our Contributor Agreement:
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#
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# * https://github.com/SciRuby/sciruby/wiki/Contributor-Agreement
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#
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# == rspec.rb
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#
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# Monkey patches for RSpec improving its ability to work well with
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# NMatrix (particularly #be_within).
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#
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require 'rspec'
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# Amend RSpec to allow #be_within for matrices.
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module RSpec::Matchers::BuiltIn
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class BeWithin
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def of(expected)
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@expected = expected
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@unit = ''
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if expected.is_a?(NMatrix)
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@tolerance = if @delta.is_a?(NMatrix)
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@delta.abs
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elsif @delta.is_a?(Array)
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NMatrix.new(:dense, expected.shape, @delta, :object).abs.cast(:dtype => expected.abs_dtype)
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else
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(NMatrix.ones_like(expected) * @delta).abs
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end
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else
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@tolerance = @delta
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end
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self
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end
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def percent_of(expected)
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@expected = expected
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@unit = '%'
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@tolerance = @expected.abs * @delta / 100.0 # <- only change is to reverse abs and @delta
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self
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end
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def matches?(actual)
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@actual = actual
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raise needs_expected unless defined? @expected
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raise needs_subtractable unless @actual.respond_to? :-
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res = (@actual - @expected).abs <= @tolerance
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#if res.is_a?(NMatrix)
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# require 'pry'
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# binding.pry
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#end
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res.is_a?(NMatrix) ? !res.any? { |x| !x } : res
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end
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end
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end
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