pharmaobservatory 0.1.7 → 0.1.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/README.md +83 -4
- data/docs/BiomarkerAlleleFrequenciesResponse.md +58 -0
- data/docs/BiomarkerAlleleFrequenciesRow.md +62 -0
- data/docs/BiomarkerAssayProvidersResponse.md +58 -0
- data/docs/BiomarkerAssayProvidersRow.md +72 -0
- data/docs/BiomarkerEvidenceByYearResponse.md +58 -0
- data/docs/BiomarkerEvidenceByYearRow.md +32 -0
- data/docs/BiomarkerTraversalStatusResponse.md +58 -0
- data/docs/BiomarkerTraversalStatusRow.md +36 -0
- data/docs/BiomarkersApi.md +320 -0
- data/docs/CompaniesApi.md +1001 -99
- data/docs/CompanyAssetsRow.md +5 -1
- data/docs/CompanyBiomarkerCapabilityResponse.md +58 -0
- data/docs/CompanyBiomarkerCapabilityRow.md +68 -0
- data/docs/CompanyProgramsRow.md +5 -1
- data/docs/CompanyRareDiseaseDeclarationsResponse.md +58 -0
- data/docs/CompanyRareDiseaseDeclarationsRow.md +52 -0
- data/docs/GxpFacilitiesRow.md +22 -0
- data/docs/LegalEntitiesApi.md +981 -101
- data/docs/LegalEntitiesRecordAttributes.md +6 -0
- data/docs/LegalEntitySecFilingsResponse.md +58 -0
- data/docs/LegalEntitySecFilingsRow.md +44 -0
- data/docs/OrgDisclosureTrendResponse.md +58 -0
- data/docs/OrgDisclosureTrendRow.md +62 -0
- data/docs/OwnershipSourceCoverageResponse.md +58 -0
- data/docs/OwnershipSourceCoverageRow.md +62 -0
- data/docs/ProgramLicensingCandidatesRow.md +5 -1
- data/docs/ProgramsRow.md +1 -1
- data/docs/RwdConductorDeliveryResponse.md +58 -0
- data/docs/RwdConductorDeliveryRow.md +74 -0
- data/docs/RwdConductorFootprintResponse.md +58 -0
- data/docs/RwdConductorFootprintRow.md +40 -0
- data/docs/RwdConductorStudiesResponse.md +58 -0
- data/docs/RwdConductorStudiesRow.md +42 -0
- data/docs/RwdConductorsApi.md +393 -0
- data/docs/RwdConductorsRecord.md +38 -0
- data/docs/RwdConductorsResponse.md +58 -0
- data/docs/RwdConductorsRow.md +72 -0
- data/docs/RwdInstitutionsApi.md +153 -0
- data/docs/RwdInstitutionsRecord.md +38 -0
- data/docs/RwdInstitutionsResponse.md +58 -0
- data/docs/RwdInstitutionsRow.md +154 -0
- data/docs/RwdNetworksApi.md +153 -0
- data/docs/RwdNetworksRecord.md +38 -0
- data/docs/RwdNetworksResponse.md +58 -0
- data/docs/RwdNetworksRow.md +110 -0
- data/docs/RwdStudiesApi.md +80 -0
- data/docs/SbtiCrosscheckResponse.md +58 -0
- data/docs/SbtiCrosscheckRow.md +48 -0
- data/docs/SponsorDeliveryResponse.md +58 -0
- data/docs/SponsorDeliveryRow.md +52 -0
- data/docs/SponsorPatentMentionsResponse.md +58 -0
- data/docs/SponsorPatentMentionsRow.md +42 -0
- data/docs/SponsorTrialConditionsResponse.md +58 -0
- data/docs/SponsorTrialConditionsRow.md +36 -0
- data/docs/SponsorTrialDrugsResponse.md +58 -0
- data/docs/SponsorTrialDrugsRow.md +34 -0
- data/lib/pharmaobservatory/api/biomarkers_api.rb +336 -0
- data/lib/pharmaobservatory/api/companies_api.rb +1131 -130
- data/lib/pharmaobservatory/api/legal_entities_api.rb +1047 -123
- data/lib/pharmaobservatory/api/rwd_conductors_api.rb +413 -0
- data/lib/pharmaobservatory/api/rwd_institutions_api.rb +161 -0
- data/lib/pharmaobservatory/api/rwd_networks_api.rb +161 -0
- data/lib/pharmaobservatory/api/rwd_studies_api.rb +84 -0
- data/lib/pharmaobservatory/models/biomarker_allele_frequencies_response.rb +478 -0
- data/lib/pharmaobservatory/models/biomarker_allele_frequencies_row.rb +465 -0
- data/lib/pharmaobservatory/models/biomarker_assay_providers_response.rb +478 -0
- data/lib/pharmaobservatory/models/biomarker_assay_providers_row.rb +520 -0
- data/lib/pharmaobservatory/models/biomarker_evidence_by_year_response.rb +478 -0
- data/lib/pharmaobservatory/models/biomarker_evidence_by_year_row.rb +300 -0
- data/lib/pharmaobservatory/models/biomarker_traversal_status_response.rb +478 -0
- data/lib/pharmaobservatory/models/biomarker_traversal_status_row.rb +322 -0
- data/lib/pharmaobservatory/models/company_assets_row.rb +24 -2
- data/lib/pharmaobservatory/models/company_biomarker_capability_response.rb +478 -0
- data/lib/pharmaobservatory/models/company_biomarker_capability_row.rb +498 -0
- data/lib/pharmaobservatory/models/company_programs_row.rb +24 -2
- data/lib/pharmaobservatory/models/company_rare_disease_declarations_response.rb +478 -0
- data/lib/pharmaobservatory/models/company_rare_disease_declarations_row.rb +410 -0
- data/lib/pharmaobservatory/models/gxp_facilities_row.rb +122 -1
- data/lib/pharmaobservatory/models/legal_entities_record_attributes.rb +28 -1
- data/lib/pharmaobservatory/models/legal_entity_sec_filings_response.rb +478 -0
- data/lib/pharmaobservatory/models/legal_entity_sec_filings_row.rb +370 -0
- data/lib/pharmaobservatory/models/org_disclosure_trend_response.rb +478 -0
- data/lib/pharmaobservatory/models/org_disclosure_trend_row.rb +465 -0
- data/lib/pharmaobservatory/models/ownership_source_coverage_response.rb +478 -0
- data/lib/pharmaobservatory/models/ownership_source_coverage_row.rb +465 -0
- data/lib/pharmaobservatory/models/program_licensing_candidates_row.rb +24 -2
- data/lib/pharmaobservatory/models/programs_row.rb +1 -1
- data/lib/pharmaobservatory/models/rwd_conductor_delivery_response.rb +478 -0
- data/lib/pharmaobservatory/models/rwd_conductor_delivery_row.rb +537 -0
- data/lib/pharmaobservatory/models/rwd_conductor_footprint_response.rb +478 -0
- data/lib/pharmaobservatory/models/rwd_conductor_footprint_row.rb +346 -0
- data/lib/pharmaobservatory/models/rwd_conductor_studies_response.rb +478 -0
- data/lib/pharmaobservatory/models/rwd_conductor_studies_row.rb +355 -0
- data/lib/pharmaobservatory/models/rwd_conductors_record.rb +385 -0
- data/lib/pharmaobservatory/models/rwd_conductors_response.rb +478 -0
- data/lib/pharmaobservatory/models/rwd_conductors_row.rb +526 -0
- data/lib/pharmaobservatory/models/rwd_institutions_record.rb +385 -0
- data/lib/pharmaobservatory/models/rwd_institutions_response.rb +478 -0
- data/lib/pharmaobservatory/models/rwd_institutions_row.rb +981 -0
- data/lib/pharmaobservatory/models/rwd_networks_record.rb +385 -0
- data/lib/pharmaobservatory/models/rwd_networks_response.rb +478 -0
- data/lib/pharmaobservatory/models/rwd_networks_row.rb +733 -0
- data/lib/pharmaobservatory/models/sbti_crosscheck_response.rb +478 -0
- data/lib/pharmaobservatory/models/sbti_crosscheck_row.rb +388 -0
- data/lib/pharmaobservatory/models/sponsor_delivery_response.rb +478 -0
- data/lib/pharmaobservatory/models/sponsor_delivery_row.rb +410 -0
- data/lib/pharmaobservatory/models/sponsor_patent_mentions_response.rb +478 -0
- data/lib/pharmaobservatory/models/sponsor_patent_mentions_row.rb +355 -0
- data/lib/pharmaobservatory/models/sponsor_trial_conditions_response.rb +478 -0
- data/lib/pharmaobservatory/models/sponsor_trial_conditions_row.rb +322 -0
- data/lib/pharmaobservatory/models/sponsor_trial_drugs_response.rb +478 -0
- data/lib/pharmaobservatory/models/sponsor_trial_drugs_row.rb +311 -0
- data/lib/pharmaobservatory/version.rb +1 -1
- data/lib/pharmaobservatory.rb +46 -0
- metadata +94 -2
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# PharmaObservatory::RwdInstitutionsApi
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All URIs are relative to *https://pharmaobservatory.com*
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| Method | HTTP request | Description |
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| ------ | ------------ | ----------- |
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| [**rwd_institutions_get**](RwdInstitutionsApi.md#rwd_institutions_get) | **GET** /api/v1/rwd_institutions/{id} | One real-world data register institution |
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| [**rwd_institutions_list**](RwdInstitutionsApi.md#rwd_institutions_list) | **GET** /api/v1/rwd_institutions | List real-world data register institutions |
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## rwd_institutions_get
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> <RwdInstitutionsRecord> rwd_institutions_get(id)
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One real-world data register institution
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### Examples
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```ruby
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require 'time'
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require 'pharmaobservatory'
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# setup authorization
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PharmaObservatory.configure do |config|
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# Configure Bearer authorization (JWT): ApiBearerJwt
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config.access_token = 'YOUR_BEARER_TOKEN'
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end
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api_instance = PharmaObservatory::RwdInstitutionsApi.new
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id = 900000005 # Integer |
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begin
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# One real-world data register institution
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result = api_instance.rwd_institutions_get(id)
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p result
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rescue PharmaObservatory::ApiError => e
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puts "Error when calling RwdInstitutionsApi->rwd_institutions_get: #{e}"
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end
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```
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#### Using the rwd_institutions_get_with_http_info variant
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This returns an Array which contains the response data, status code and headers.
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> <Array(<RwdInstitutionsRecord>, Integer, Hash)> rwd_institutions_get_with_http_info(id)
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```ruby
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begin
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# One real-world data register institution
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data, status_code, headers = api_instance.rwd_institutions_get_with_http_info(id)
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p status_code # => 2xx
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p headers # => { ... }
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p data # => <RwdInstitutionsRecord>
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rescue PharmaObservatory::ApiError => e
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puts "Error when calling RwdInstitutionsApi->rwd_institutions_get_with_http_info: #{e}"
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end
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```
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### Parameters
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| Name | Type | Description | Notes |
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| ---- | ---- | ----------- | ----- |
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| **id** | **Integer** | | |
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### Return type
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[**RwdInstitutionsRecord**](RwdInstitutionsRecord.md)
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### Authorization
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[ApiBearerJwt](../README.md#ApiBearerJwt)
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### HTTP request headers
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- **Content-Type**: Not defined
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- **Accept**: application/json
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## rwd_institutions_list
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> <RwdInstitutionsResponse> rwd_institutions_list(opts)
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List real-world data register institutions
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### Examples
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```ruby
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require 'time'
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require 'pharmaobservatory'
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# setup authorization
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PharmaObservatory.configure do |config|
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# Configure Bearer authorization (JWT): ApiBearerJwt
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config.access_token = 'YOUR_BEARER_TOKEN'
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end
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api_instance = PharmaObservatory::RwdInstitutionsApi.new
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opts = {
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cursor: 'cursor_example', # String | The next_cursor of the previous page. Opaque; it is bound to the filters and the warehouse build that issued it.
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limit: 56, # Integer | Rows per page, up to 500 (default 50).
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sort: 'sort_example', # String | Comma separated columns, a leading minus for descending: sort=a,-b.
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group_by: 'group_by_example', # String | A dimension to group by; a date takes :year, :quarter or :month.
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measure: 'measure_example' # String | count, sum(col), avg(col), min(col), max(col), median(col) or count_distinct(col).
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}
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begin
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# List real-world data register institutions
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result = api_instance.rwd_institutions_list(opts)
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p result
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rescue PharmaObservatory::ApiError => e
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puts "Error when calling RwdInstitutionsApi->rwd_institutions_list: #{e}"
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end
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```
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#### Using the rwd_institutions_list_with_http_info variant
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This returns an Array which contains the response data, status code and headers.
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> <Array(<RwdInstitutionsResponse>, Integer, Hash)> rwd_institutions_list_with_http_info(opts)
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```ruby
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begin
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# List real-world data register institutions
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data, status_code, headers = api_instance.rwd_institutions_list_with_http_info(opts)
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p status_code # => 2xx
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p headers # => { ... }
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p data # => <RwdInstitutionsResponse>
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rescue PharmaObservatory::ApiError => e
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puts "Error when calling RwdInstitutionsApi->rwd_institutions_list_with_http_info: #{e}"
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end
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```
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### Parameters
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| Name | Type | Description | Notes |
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| ---- | ---- | ----------- | ----- |
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| **cursor** | **String** | The next_cursor of the previous page. Opaque; it is bound to the filters and the warehouse build that issued it. | [optional] |
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| **limit** | **Integer** | Rows per page, up to 500 (default 50). | [optional] |
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| **sort** | **String** | Comma separated columns, a leading minus for descending: sort=a,-b. | [optional] |
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| **group_by** | **String** | A dimension to group by; a date takes :year, :quarter or :month. | [optional] |
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| **measure** | **String** | count, sum(col), avg(col), min(col), max(col), median(col) or count_distinct(col). | [optional] |
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### Return type
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[**RwdInstitutionsResponse**](RwdInstitutionsResponse.md)
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### Authorization
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[ApiBearerJwt](../README.md#ApiBearerJwt)
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### HTTP request headers
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- **Content-Type**: Not defined
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- **Accept**: application/json
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# PharmaObservatory::RwdInstitutionsRecord
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## Properties
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| Name | Type | Description | Notes |
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| ---- | ---- | ----------- | ----- |
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| **object_type** | **String** | | |
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| **id** | **String** | | |
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| **record** | [**RwdInstitutionsRow**](RwdInstitutionsRow.md) | | |
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| **attributes** | **Object** | | [optional] |
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| **datasets** | [**Array<DatasetListing>**](DatasetListing.md) | | |
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| **attribution** | [**Array<DatasetAttribution>**](DatasetAttribution.md) | | [optional] |
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| **source_credit** | **String** | | [optional] |
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| **freshness** | [**BiomarkerAssayEvidenceResponseFreshness**](BiomarkerAssayEvidenceResponseFreshness.md) | | [optional] |
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| **build** | [**BiomarkerAssayEvidenceResponseBuild**](BiomarkerAssayEvidenceResponseBuild.md) | | [optional] |
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| **build_state** | [**DatasetBuildState**](DatasetBuildState.md) | | [optional] |
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| **restriction** | **Hash<String, Object>** | | [optional] |
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## Example
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```ruby
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require 'pharmaobservatory'
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instance = PharmaObservatory::RwdInstitutionsRecord.new(
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object_type: null,
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id: null,
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record: null,
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attributes: null,
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datasets: null,
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attribution: null,
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source_credit: null,
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freshness: null,
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build: null,
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build_state: null,
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restriction: null
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)
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```
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# PharmaObservatory::RwdInstitutionsResponse
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## Properties
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| Name | Type | Description | Notes |
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| ---- | ---- | ----------- | ----- |
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| **dataset** | **String** | | |
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| **grain** | **String** | | [optional] |
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| **object_type** | **String** | | [optional] |
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| **id** | **String** | | [optional] |
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| **scope** | [**BiomarkerAssayEvidenceResponseScope**](BiomarkerAssayEvidenceResponseScope.md) | | [optional] |
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| **columns** | [**Array<DatasetColumn>**](DatasetColumn.md) | | |
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| **rows** | [**Array<RwdInstitutionsRow>**](RwdInstitutionsRow.md) | | |
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| **total** | **Integer** | The exact count of the filtered rows on an ungrouped read, carried by the cursor; null when grouped. | [optional] |
|
|
15
|
+
| **next_cursor** | **String** | | [optional] |
|
|
16
|
+
| **sort** | **Array<String>** | | [optional] |
|
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+
| **filters** | **Array<Hash<String, Object>>** | | [optional] |
|
|
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+
| **group_by** | **Array<String>** | | [optional] |
|
|
19
|
+
| **measures** | **Array<String>** | | [optional] |
|
|
20
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+
| **attribution** | [**Array<DatasetAttribution>**](DatasetAttribution.md) | | [optional] |
|
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21
|
+
| **source_credit** | **String** | | [optional] |
|
|
22
|
+
| **withheld_tiers** | **Array<String>** | | [optional] |
|
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23
|
+
| **withheld_columns** | **Array<String>** | | [optional] |
|
|
24
|
+
| **freshness** | [**BiomarkerAssayEvidenceResponseFreshness**](BiomarkerAssayEvidenceResponseFreshness.md) | | [optional] |
|
|
25
|
+
| **build** | [**BiomarkerAssayEvidenceResponseBuild**](BiomarkerAssayEvidenceResponseBuild.md) | | [optional] |
|
|
26
|
+
| **build_state** | [**DatasetBuildState**](DatasetBuildState.md) | | [optional] |
|
|
27
|
+
| **restriction** | **Hash<String, Object>** | | [optional] |
|
|
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|
+
|
|
29
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+
## Example
|
|
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+
|
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31
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+
```ruby
|
|
32
|
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require 'pharmaobservatory'
|
|
33
|
+
|
|
34
|
+
instance = PharmaObservatory::RwdInstitutionsResponse.new(
|
|
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dataset: null,
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+
grain: null,
|
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object_type: null,
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id: null,
|
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scope: null,
|
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columns: null,
|
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rows: null,
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total: null,
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next_cursor: null,
|
|
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+
sort: null,
|
|
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|
+
filters: null,
|
|
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|
+
group_by: null,
|
|
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|
+
measures: null,
|
|
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|
+
attribution: null,
|
|
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|
+
source_credit: null,
|
|
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|
+
withheld_tiers: null,
|
|
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|
+
withheld_columns: null,
|
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+
freshness: null,
|
|
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|
+
build: null,
|
|
54
|
+
build_state: null,
|
|
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|
+
restriction: null
|
|
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|
+
)
|
|
57
|
+
```
|
|
58
|
+
|
|
@@ -0,0 +1,154 @@
|
|
|
1
|
+
# PharmaObservatory::RwdInstitutionsRow
|
|
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|
+
|
|
3
|
+
## Properties
|
|
4
|
+
|
|
5
|
+
| Name | Type | Description | Notes |
|
|
6
|
+
| ---- | ---- | ----------- | ----- |
|
|
7
|
+
| **institution_id** | **String** | The register's own Institution ID. The entry key of the rwd_institutions object type. The register can list one name under two ids; counts are per id and are not additive across rows. | [optional] |
|
|
8
|
+
| **institution_name** | **String** | The institution's name as the register spells it; an institution here can be registered under a person's name. | [optional] |
|
|
9
|
+
| **institution_org_id** | **String** | The legal entity (organization record id) the institution resolved to; null when it did not resolve. An unresolved institution keeps its row with null ids. | [optional] |
|
|
10
|
+
| **institution_company_id** | **String** | The company the institution's legal entity belongs to; null when unresolved. | [optional] |
|
|
11
|
+
| **institution_company_name** | **String** | The company's name. | [optional] |
|
|
12
|
+
| **institution_group_id** | **String** | The current ultimate parent company of the institution's company. | [optional] |
|
|
13
|
+
| **institution_group_name** | **String** | The group's name. | [optional] |
|
|
14
|
+
| **org_match_rung** | **String** | How the institution name resolved to a legal entity (the resolution rung); null when unresolved. | [optional] |
|
|
15
|
+
| **org_match_tier** | **String** | The confidence tier of that resolution; null when unresolved. | [optional] |
|
|
16
|
+
| **parent_org_id** | **String** | The legal entity the register's parent institution claim resolved to. Most parent claims are claims between register entries, not between organizations: read it with is_org_to_org. | [optional] |
|
|
17
|
+
| **is_org_to_org** | **Boolean** | True when the parent claim is a claim between two resolved legal entities, false when it only links register entries. | [optional] |
|
|
18
|
+
| **institution_name_key** | **String** | The normalised name key the study, membership and holder edges join on. | [optional] |
|
|
19
|
+
| **parent_name** | **String** | The parent institution's name as the register spells it. | [optional] |
|
|
20
|
+
| **parent_name_key** | **String** | The normalised key of the parent name. | [optional] |
|
|
21
|
+
| **registration_state** | **String** | self_registered_profile when the entry carries at least one descriptive field, catalogue_name_entry when it is a name and an id only (a catalogue pick-list entry nobody registered a profile for). The declaration columns are null on a catalogue name entry. | [optional] |
|
|
22
|
+
| **is_self_registered_profile** | **Boolean** | True when registration_state is self_registered_profile. | [optional] |
|
|
23
|
+
| **declared_profile_fields** | **Integer** | How many of the declarable profile fields the entry answered. | [optional] |
|
|
24
|
+
| **declarable_profile_fields** | **Integer** | How many profile fields the register offers; the denominator of declared_profile_fields. | [optional] |
|
|
25
|
+
| **type_of_institution** | **String** | The type of institution the entry declares, as typed. | [optional] |
|
|
26
|
+
| **institution_role** | **String** | The role the entry declares for the institution, as typed. | [optional] |
|
|
27
|
+
| **institution_countries** | **String** | The country text the entry declares, as typed. | [optional] |
|
|
28
|
+
| **institution_country_names** | **Array<String>** | The declared countries split by the register's country list, one element per country. | [optional] |
|
|
29
|
+
| **institution_country_count** | **Integer** | How many countries institution_country_names holds. | [optional] |
|
|
30
|
+
| **unmatched_country_fragments** | **Array<String>** | Country text items the country vocabulary of this build does not hold. | [optional] |
|
|
31
|
+
| **single_declared_country_iso2** | **String** | The ISO 3166-1 alpha-2 code when the entry declares exactly one country, null otherwise. | [optional] |
|
|
32
|
+
| **institution_website** | **String** | The institution's website as the register holds it. | [optional] |
|
|
33
|
+
| **catalogue_url** | **String** | The address of this entry on the HMA-EMA catalogue site (the register's URL LINK). | [optional] |
|
|
34
|
+
| **open_to_industry_funded_research** | **Boolean** | Whether the institution declares it is open to industry-funded research; null on a catalogue name entry, where the export writes a default No that is not an answer. | [optional] |
|
|
35
|
+
| **collects_data_directly_from_patients** | **Boolean** | Whether the institution declares it collects data directly from patients; null on a catalogue name entry. | [optional] |
|
|
36
|
+
| **is_encepp_partner** | **Boolean** | Whether the entry declares an ENCePP partnership; null on a catalogue name entry, where the export writes a default No that is not an answer. | [optional] |
|
|
37
|
+
| **record_updated_at** | **Time** | When the registrant last edited this catalogue entry. A different clock from last_refreshed_on: it dates the web form, not the database. | [optional] |
|
|
38
|
+
| **record_updated_is_mass_edit** | **Boolean** | True when the record's last update date is a mass-edit date: one shared by an outsized part of the register, so it dates a migration and not the registrant. | [optional] |
|
|
39
|
+
| **record_updated_at_attested** | **Time** | record_updated_at with the mass-edit dates removed (null for a mass-edit date or no timestamp): the column to sort a freshness question on. | [optional] |
|
|
40
|
+
| **record_updated_date_share** | **Float** | The share of the register whose last update carries the same date, on every row so a mass-edit date is visible. | [optional] |
|
|
41
|
+
| **record_first_published_at** | **Time** | When the catalogue entry was first published. | [optional] |
|
|
42
|
+
| **is_outdated** | **Boolean** | EMA's own Outdated flag, carried through untouched; the register flags none of the data sources, so read false as EMA's answer and not as a currency finding. | [optional] |
|
|
43
|
+
| **conducting_studies_lifetime** | **Integer** | Distinct registered studies the institution's name conducted. Four separate activity numbers; never added together. | [optional] |
|
|
44
|
+
| **conducting_studies_last_5_years** | **Integer** | Conducting studies that started within five years of the snapshot. | [optional] |
|
|
45
|
+
| **conducting_studies_ongoing** | **Integer** | Conducting studies whose status is Ongoing. | [optional] |
|
|
46
|
+
| **conducting_studies_planned** | **Integer** | Conducting studies whose status is Planned. | [optional] |
|
|
47
|
+
| **additional_role_studies** | **Integer** | Distinct registered studies the conductor is named on as an additional institution; a different claim from conducting, never added to it. | [optional] |
|
|
48
|
+
| **most_recent_study_start_on** | **Date** | The latest actual start date among the studies it conducted (or delivered, for a network). | [optional] |
|
|
49
|
+
| **held_source_count** | **Integer** | How many registered data sources name this institution as their data holder; zero is no source naming it, not a finding about the institution. | [optional] |
|
|
50
|
+
| **held_source_ids** | **Array<String>** | The register Data source IDs of those sources. | [optional] |
|
|
51
|
+
| **held_active_population** | **Integer** | The sum of the active populations the held sources declare. | [optional] |
|
|
52
|
+
| **held_max_active_population** | **Integer** | The largest active population any held source declares. | [optional] |
|
|
53
|
+
| **held_sources_declaring_active_population** | **Integer** | How many held sources declare an active population. | [optional] |
|
|
54
|
+
| **held_qualified_source_count** | **Integer** | How many held sources declare a data source qualification. | [optional] |
|
|
55
|
+
| **held_darwin_partner_source_count** | **Integer** | How many held sources are DARWIN EU data partners. | [optional] |
|
|
56
|
+
| **network_membership_count** | **Integer** | How many networks' own member lists name this institution; zero is the network's silence, not a property of the institution. | [optional] |
|
|
57
|
+
| **network_ids** | **Array<String>** | The register Network IDs of those networks. | [optional] |
|
|
58
|
+
| **network_names** | **Array<String>** | The names of those networks. | [optional] |
|
|
59
|
+
| **institution_register_total** | **Integer** | The number of institutions in the whole institution register at the snapshot. | [optional] |
|
|
60
|
+
| **self_registered_profile_total** | **Integer** | How many register entries are self-registered profiles. | [optional] |
|
|
61
|
+
| **catalogue_name_entry_total** | **Integer** | How many register entries are catalogue name entries. | [optional] |
|
|
62
|
+
| **institutions_declaring_a_country** | **Integer** | How many register institutions declare a country. | [optional] |
|
|
63
|
+
| **institutions_in_any_member_list** | **Integer** | How many register institutions at least one network member list names. | [optional] |
|
|
64
|
+
| **institution_name_key_total** | **Integer** | How many distinct institution name keys the register holds. | [optional] |
|
|
65
|
+
| **institutions_holding_a_source** | **Integer** | How many register institutions hold a registered data source. | [optional] |
|
|
66
|
+
| **declared_holder_name_total** | **Integer** | How many distinct data holder names the data source register declares. | [optional] |
|
|
67
|
+
| **declared_holder_name_matched** | **Integer** | How many of those holder names match a register institution. | [optional] |
|
|
68
|
+
| **register_source_count** | **Integer** | The number of data sources in the whole data source register at the snapshot: the denominator every source count is over. Not a count of real-world data sources in the world. | [optional] |
|
|
69
|
+
| **study_register_total** | **Integer** | The number of studies in the whole study register at the snapshot. | [optional] |
|
|
70
|
+
| **studies_naming_a_registered_source** | **Integer** | How many registered studies name at least one data source that is itself registered; the denominator under study_count. | [optional] |
|
|
71
|
+
| **studies_naming_a_registered_conductor** | **Integer** | How many registered studies name a conducting institution that is itself registered. | [optional] |
|
|
72
|
+
| **snapshot_label** | **String** | The label of the catalogue snapshot the row was read from (a date). | [optional] |
|
|
73
|
+
| **accessed_month** | **String** | The month and year the catalogue was accessed (YYYY-MM), which EMA's site asks to be cited with its URL. | [optional] |
|
|
74
|
+
| **restriction_tier** | **String** | The license restriction tier of the row's source. Every row of this dataset is licensable (PROVISIONAL, legal read pending). | [optional] |
|
|
75
|
+
| **attribution** | **String** | The attribution line EMA requires, including the catalogue URL and the access month; quote it with any figure taken from the row. | [optional] |
|
|
76
|
+
|
|
77
|
+
## Example
|
|
78
|
+
|
|
79
|
+
```ruby
|
|
80
|
+
require 'pharmaobservatory'
|
|
81
|
+
|
|
82
|
+
instance = PharmaObservatory::RwdInstitutionsRow.new(
|
|
83
|
+
institution_id: null,
|
|
84
|
+
institution_name: null,
|
|
85
|
+
institution_org_id: null,
|
|
86
|
+
institution_company_id: null,
|
|
87
|
+
institution_company_name: null,
|
|
88
|
+
institution_group_id: null,
|
|
89
|
+
institution_group_name: null,
|
|
90
|
+
org_match_rung: null,
|
|
91
|
+
org_match_tier: null,
|
|
92
|
+
parent_org_id: null,
|
|
93
|
+
is_org_to_org: null,
|
|
94
|
+
institution_name_key: null,
|
|
95
|
+
parent_name: null,
|
|
96
|
+
parent_name_key: null,
|
|
97
|
+
registration_state: null,
|
|
98
|
+
is_self_registered_profile: null,
|
|
99
|
+
declared_profile_fields: null,
|
|
100
|
+
declarable_profile_fields: null,
|
|
101
|
+
type_of_institution: null,
|
|
102
|
+
institution_role: null,
|
|
103
|
+
institution_countries: null,
|
|
104
|
+
institution_country_names: null,
|
|
105
|
+
institution_country_count: null,
|
|
106
|
+
unmatched_country_fragments: null,
|
|
107
|
+
single_declared_country_iso2: null,
|
|
108
|
+
institution_website: null,
|
|
109
|
+
catalogue_url: null,
|
|
110
|
+
open_to_industry_funded_research: null,
|
|
111
|
+
collects_data_directly_from_patients: null,
|
|
112
|
+
is_encepp_partner: null,
|
|
113
|
+
record_updated_at: null,
|
|
114
|
+
record_updated_is_mass_edit: null,
|
|
115
|
+
record_updated_at_attested: null,
|
|
116
|
+
record_updated_date_share: null,
|
|
117
|
+
record_first_published_at: null,
|
|
118
|
+
is_outdated: null,
|
|
119
|
+
conducting_studies_lifetime: null,
|
|
120
|
+
conducting_studies_last_5_years: null,
|
|
121
|
+
conducting_studies_ongoing: null,
|
|
122
|
+
conducting_studies_planned: null,
|
|
123
|
+
additional_role_studies: null,
|
|
124
|
+
most_recent_study_start_on: null,
|
|
125
|
+
held_source_count: null,
|
|
126
|
+
held_source_ids: null,
|
|
127
|
+
held_active_population: null,
|
|
128
|
+
held_max_active_population: null,
|
|
129
|
+
held_sources_declaring_active_population: null,
|
|
130
|
+
held_qualified_source_count: null,
|
|
131
|
+
held_darwin_partner_source_count: null,
|
|
132
|
+
network_membership_count: null,
|
|
133
|
+
network_ids: null,
|
|
134
|
+
network_names: null,
|
|
135
|
+
institution_register_total: null,
|
|
136
|
+
self_registered_profile_total: null,
|
|
137
|
+
catalogue_name_entry_total: null,
|
|
138
|
+
institutions_declaring_a_country: null,
|
|
139
|
+
institutions_in_any_member_list: null,
|
|
140
|
+
institution_name_key_total: null,
|
|
141
|
+
institutions_holding_a_source: null,
|
|
142
|
+
declared_holder_name_total: null,
|
|
143
|
+
declared_holder_name_matched: null,
|
|
144
|
+
register_source_count: null,
|
|
145
|
+
study_register_total: null,
|
|
146
|
+
studies_naming_a_registered_source: null,
|
|
147
|
+
studies_naming_a_registered_conductor: null,
|
|
148
|
+
snapshot_label: null,
|
|
149
|
+
accessed_month: null,
|
|
150
|
+
restriction_tier: null,
|
|
151
|
+
attribution: null
|
|
152
|
+
)
|
|
153
|
+
```
|
|
154
|
+
|
|
@@ -0,0 +1,153 @@
|
|
|
1
|
+
# PharmaObservatory::RwdNetworksApi
|
|
2
|
+
|
|
3
|
+
All URIs are relative to *https://pharmaobservatory.com*
|
|
4
|
+
|
|
5
|
+
| Method | HTTP request | Description |
|
|
6
|
+
| ------ | ------------ | ----------- |
|
|
7
|
+
| [**rwd_networks_get**](RwdNetworksApi.md#rwd_networks_get) | **GET** /api/v1/rwd_networks/{id} | One real-world data register network |
|
|
8
|
+
| [**rwd_networks_list**](RwdNetworksApi.md#rwd_networks_list) | **GET** /api/v1/rwd_networks | List real-world data register networks |
|
|
9
|
+
|
|
10
|
+
|
|
11
|
+
## rwd_networks_get
|
|
12
|
+
|
|
13
|
+
> <RwdNetworksRecord> rwd_networks_get(id)
|
|
14
|
+
|
|
15
|
+
One real-world data register network
|
|
16
|
+
|
|
17
|
+
### Examples
|
|
18
|
+
|
|
19
|
+
```ruby
|
|
20
|
+
require 'time'
|
|
21
|
+
require 'pharmaobservatory'
|
|
22
|
+
# setup authorization
|
|
23
|
+
PharmaObservatory.configure do |config|
|
|
24
|
+
# Configure Bearer authorization (JWT): ApiBearerJwt
|
|
25
|
+
config.access_token = 'YOUR_BEARER_TOKEN'
|
|
26
|
+
end
|
|
27
|
+
|
|
28
|
+
api_instance = PharmaObservatory::RwdNetworksApi.new
|
|
29
|
+
id = 900000101 # Integer |
|
|
30
|
+
|
|
31
|
+
begin
|
|
32
|
+
# One real-world data register network
|
|
33
|
+
result = api_instance.rwd_networks_get(id)
|
|
34
|
+
p result
|
|
35
|
+
rescue PharmaObservatory::ApiError => e
|
|
36
|
+
puts "Error when calling RwdNetworksApi->rwd_networks_get: #{e}"
|
|
37
|
+
end
|
|
38
|
+
```
|
|
39
|
+
|
|
40
|
+
#### Using the rwd_networks_get_with_http_info variant
|
|
41
|
+
|
|
42
|
+
This returns an Array which contains the response data, status code and headers.
|
|
43
|
+
|
|
44
|
+
> <Array(<RwdNetworksRecord>, Integer, Hash)> rwd_networks_get_with_http_info(id)
|
|
45
|
+
|
|
46
|
+
```ruby
|
|
47
|
+
begin
|
|
48
|
+
# One real-world data register network
|
|
49
|
+
data, status_code, headers = api_instance.rwd_networks_get_with_http_info(id)
|
|
50
|
+
p status_code # => 2xx
|
|
51
|
+
p headers # => { ... }
|
|
52
|
+
p data # => <RwdNetworksRecord>
|
|
53
|
+
rescue PharmaObservatory::ApiError => e
|
|
54
|
+
puts "Error when calling RwdNetworksApi->rwd_networks_get_with_http_info: #{e}"
|
|
55
|
+
end
|
|
56
|
+
```
|
|
57
|
+
|
|
58
|
+
### Parameters
|
|
59
|
+
|
|
60
|
+
| Name | Type | Description | Notes |
|
|
61
|
+
| ---- | ---- | ----------- | ----- |
|
|
62
|
+
| **id** | **Integer** | | |
|
|
63
|
+
|
|
64
|
+
### Return type
|
|
65
|
+
|
|
66
|
+
[**RwdNetworksRecord**](RwdNetworksRecord.md)
|
|
67
|
+
|
|
68
|
+
### Authorization
|
|
69
|
+
|
|
70
|
+
[ApiBearerJwt](../README.md#ApiBearerJwt)
|
|
71
|
+
|
|
72
|
+
### HTTP request headers
|
|
73
|
+
|
|
74
|
+
- **Content-Type**: Not defined
|
|
75
|
+
- **Accept**: application/json
|
|
76
|
+
|
|
77
|
+
|
|
78
|
+
## rwd_networks_list
|
|
79
|
+
|
|
80
|
+
> <RwdNetworksResponse> rwd_networks_list(opts)
|
|
81
|
+
|
|
82
|
+
List real-world data register networks
|
|
83
|
+
|
|
84
|
+
### Examples
|
|
85
|
+
|
|
86
|
+
```ruby
|
|
87
|
+
require 'time'
|
|
88
|
+
require 'pharmaobservatory'
|
|
89
|
+
# setup authorization
|
|
90
|
+
PharmaObservatory.configure do |config|
|
|
91
|
+
# Configure Bearer authorization (JWT): ApiBearerJwt
|
|
92
|
+
config.access_token = 'YOUR_BEARER_TOKEN'
|
|
93
|
+
end
|
|
94
|
+
|
|
95
|
+
api_instance = PharmaObservatory::RwdNetworksApi.new
|
|
96
|
+
opts = {
|
|
97
|
+
cursor: 'cursor_example', # String | The next_cursor of the previous page. Opaque; it is bound to the filters and the warehouse build that issued it.
|
|
98
|
+
limit: 56, # Integer | Rows per page, up to 500 (default 50).
|
|
99
|
+
sort: 'sort_example', # String | Comma separated columns, a leading minus for descending: sort=a,-b.
|
|
100
|
+
group_by: 'group_by_example', # String | A dimension to group by; a date takes :year, :quarter or :month.
|
|
101
|
+
measure: 'measure_example' # String | count, sum(col), avg(col), min(col), max(col), median(col) or count_distinct(col).
|
|
102
|
+
}
|
|
103
|
+
|
|
104
|
+
begin
|
|
105
|
+
# List real-world data register networks
|
|
106
|
+
result = api_instance.rwd_networks_list(opts)
|
|
107
|
+
p result
|
|
108
|
+
rescue PharmaObservatory::ApiError => e
|
|
109
|
+
puts "Error when calling RwdNetworksApi->rwd_networks_list: #{e}"
|
|
110
|
+
end
|
|
111
|
+
```
|
|
112
|
+
|
|
113
|
+
#### Using the rwd_networks_list_with_http_info variant
|
|
114
|
+
|
|
115
|
+
This returns an Array which contains the response data, status code and headers.
|
|
116
|
+
|
|
117
|
+
> <Array(<RwdNetworksResponse>, Integer, Hash)> rwd_networks_list_with_http_info(opts)
|
|
118
|
+
|
|
119
|
+
```ruby
|
|
120
|
+
begin
|
|
121
|
+
# List real-world data register networks
|
|
122
|
+
data, status_code, headers = api_instance.rwd_networks_list_with_http_info(opts)
|
|
123
|
+
p status_code # => 2xx
|
|
124
|
+
p headers # => { ... }
|
|
125
|
+
p data # => <RwdNetworksResponse>
|
|
126
|
+
rescue PharmaObservatory::ApiError => e
|
|
127
|
+
puts "Error when calling RwdNetworksApi->rwd_networks_list_with_http_info: #{e}"
|
|
128
|
+
end
|
|
129
|
+
```
|
|
130
|
+
|
|
131
|
+
### Parameters
|
|
132
|
+
|
|
133
|
+
| Name | Type | Description | Notes |
|
|
134
|
+
| ---- | ---- | ----------- | ----- |
|
|
135
|
+
| **cursor** | **String** | The next_cursor of the previous page. Opaque; it is bound to the filters and the warehouse build that issued it. | [optional] |
|
|
136
|
+
| **limit** | **Integer** | Rows per page, up to 500 (default 50). | [optional] |
|
|
137
|
+
| **sort** | **String** | Comma separated columns, a leading minus for descending: sort=a,-b. | [optional] |
|
|
138
|
+
| **group_by** | **String** | A dimension to group by; a date takes :year, :quarter or :month. | [optional] |
|
|
139
|
+
| **measure** | **String** | count, sum(col), avg(col), min(col), max(col), median(col) or count_distinct(col). | [optional] |
|
|
140
|
+
|
|
141
|
+
### Return type
|
|
142
|
+
|
|
143
|
+
[**RwdNetworksResponse**](RwdNetworksResponse.md)
|
|
144
|
+
|
|
145
|
+
### Authorization
|
|
146
|
+
|
|
147
|
+
[ApiBearerJwt](../README.md#ApiBearerJwt)
|
|
148
|
+
|
|
149
|
+
### HTTP request headers
|
|
150
|
+
|
|
151
|
+
- **Content-Type**: Not defined
|
|
152
|
+
- **Accept**: application/json
|
|
153
|
+
|
|
@@ -0,0 +1,38 @@
|
|
|
1
|
+
# PharmaObservatory::RwdNetworksRecord
|
|
2
|
+
|
|
3
|
+
## Properties
|
|
4
|
+
|
|
5
|
+
| Name | Type | Description | Notes |
|
|
6
|
+
| ---- | ---- | ----------- | ----- |
|
|
7
|
+
| **object_type** | **String** | | |
|
|
8
|
+
| **id** | **String** | | |
|
|
9
|
+
| **record** | [**RwdNetworksRow**](RwdNetworksRow.md) | | |
|
|
10
|
+
| **attributes** | **Object** | | [optional] |
|
|
11
|
+
| **datasets** | [**Array<DatasetListing>**](DatasetListing.md) | | |
|
|
12
|
+
| **attribution** | [**Array<DatasetAttribution>**](DatasetAttribution.md) | | [optional] |
|
|
13
|
+
| **source_credit** | **String** | | [optional] |
|
|
14
|
+
| **freshness** | [**BiomarkerAssayEvidenceResponseFreshness**](BiomarkerAssayEvidenceResponseFreshness.md) | | [optional] |
|
|
15
|
+
| **build** | [**BiomarkerAssayEvidenceResponseBuild**](BiomarkerAssayEvidenceResponseBuild.md) | | [optional] |
|
|
16
|
+
| **build_state** | [**DatasetBuildState**](DatasetBuildState.md) | | [optional] |
|
|
17
|
+
| **restriction** | **Hash<String, Object>** | | [optional] |
|
|
18
|
+
|
|
19
|
+
## Example
|
|
20
|
+
|
|
21
|
+
```ruby
|
|
22
|
+
require 'pharmaobservatory'
|
|
23
|
+
|
|
24
|
+
instance = PharmaObservatory::RwdNetworksRecord.new(
|
|
25
|
+
object_type: null,
|
|
26
|
+
id: null,
|
|
27
|
+
record: null,
|
|
28
|
+
attributes: null,
|
|
29
|
+
datasets: null,
|
|
30
|
+
attribution: null,
|
|
31
|
+
source_credit: null,
|
|
32
|
+
freshness: null,
|
|
33
|
+
build: null,
|
|
34
|
+
build_state: null,
|
|
35
|
+
restriction: null
|
|
36
|
+
)
|
|
37
|
+
```
|
|
38
|
+
|
|
@@ -0,0 +1,58 @@
|
|
|
1
|
+
# PharmaObservatory::RwdNetworksResponse
|
|
2
|
+
|
|
3
|
+
## Properties
|
|
4
|
+
|
|
5
|
+
| Name | Type | Description | Notes |
|
|
6
|
+
| ---- | ---- | ----------- | ----- |
|
|
7
|
+
| **dataset** | **String** | | |
|
|
8
|
+
| **grain** | **String** | | [optional] |
|
|
9
|
+
| **object_type** | **String** | | [optional] |
|
|
10
|
+
| **id** | **String** | | [optional] |
|
|
11
|
+
| **scope** | [**BiomarkerAssayEvidenceResponseScope**](BiomarkerAssayEvidenceResponseScope.md) | | [optional] |
|
|
12
|
+
| **columns** | [**Array<DatasetColumn>**](DatasetColumn.md) | | |
|
|
13
|
+
| **rows** | [**Array<RwdNetworksRow>**](RwdNetworksRow.md) | | |
|
|
14
|
+
| **total** | **Integer** | The exact count of the filtered rows on an ungrouped read, carried by the cursor; null when grouped. | [optional] |
|
|
15
|
+
| **next_cursor** | **String** | | [optional] |
|
|
16
|
+
| **sort** | **Array<String>** | | [optional] |
|
|
17
|
+
| **filters** | **Array<Hash<String, Object>>** | | [optional] |
|
|
18
|
+
| **group_by** | **Array<String>** | | [optional] |
|
|
19
|
+
| **measures** | **Array<String>** | | [optional] |
|
|
20
|
+
| **attribution** | [**Array<DatasetAttribution>**](DatasetAttribution.md) | | [optional] |
|
|
21
|
+
| **source_credit** | **String** | | [optional] |
|
|
22
|
+
| **withheld_tiers** | **Array<String>** | | [optional] |
|
|
23
|
+
| **withheld_columns** | **Array<String>** | | [optional] |
|
|
24
|
+
| **freshness** | [**BiomarkerAssayEvidenceResponseFreshness**](BiomarkerAssayEvidenceResponseFreshness.md) | | [optional] |
|
|
25
|
+
| **build** | [**BiomarkerAssayEvidenceResponseBuild**](BiomarkerAssayEvidenceResponseBuild.md) | | [optional] |
|
|
26
|
+
| **build_state** | [**DatasetBuildState**](DatasetBuildState.md) | | [optional] |
|
|
27
|
+
| **restriction** | **Hash<String, Object>** | | [optional] |
|
|
28
|
+
|
|
29
|
+
## Example
|
|
30
|
+
|
|
31
|
+
```ruby
|
|
32
|
+
require 'pharmaobservatory'
|
|
33
|
+
|
|
34
|
+
instance = PharmaObservatory::RwdNetworksResponse.new(
|
|
35
|
+
dataset: null,
|
|
36
|
+
grain: null,
|
|
37
|
+
object_type: null,
|
|
38
|
+
id: null,
|
|
39
|
+
scope: null,
|
|
40
|
+
columns: null,
|
|
41
|
+
rows: null,
|
|
42
|
+
total: null,
|
|
43
|
+
next_cursor: null,
|
|
44
|
+
sort: null,
|
|
45
|
+
filters: null,
|
|
46
|
+
group_by: null,
|
|
47
|
+
measures: null,
|
|
48
|
+
attribution: null,
|
|
49
|
+
source_credit: null,
|
|
50
|
+
withheld_tiers: null,
|
|
51
|
+
withheld_columns: null,
|
|
52
|
+
freshness: null,
|
|
53
|
+
build: null,
|
|
54
|
+
build_state: null,
|
|
55
|
+
restriction: null
|
|
56
|
+
)
|
|
57
|
+
```
|
|
58
|
+
|