pharmaobservatory 0.1.7 → 0.1.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (117) hide show
  1. checksums.yaml +4 -4
  2. data/README.md +83 -4
  3. data/docs/BiomarkerAlleleFrequenciesResponse.md +58 -0
  4. data/docs/BiomarkerAlleleFrequenciesRow.md +62 -0
  5. data/docs/BiomarkerAssayProvidersResponse.md +58 -0
  6. data/docs/BiomarkerAssayProvidersRow.md +72 -0
  7. data/docs/BiomarkerEvidenceByYearResponse.md +58 -0
  8. data/docs/BiomarkerEvidenceByYearRow.md +32 -0
  9. data/docs/BiomarkerTraversalStatusResponse.md +58 -0
  10. data/docs/BiomarkerTraversalStatusRow.md +36 -0
  11. data/docs/BiomarkersApi.md +320 -0
  12. data/docs/CompaniesApi.md +1001 -99
  13. data/docs/CompanyAssetsRow.md +5 -1
  14. data/docs/CompanyBiomarkerCapabilityResponse.md +58 -0
  15. data/docs/CompanyBiomarkerCapabilityRow.md +68 -0
  16. data/docs/CompanyProgramsRow.md +5 -1
  17. data/docs/CompanyRareDiseaseDeclarationsResponse.md +58 -0
  18. data/docs/CompanyRareDiseaseDeclarationsRow.md +52 -0
  19. data/docs/GxpFacilitiesRow.md +22 -0
  20. data/docs/LegalEntitiesApi.md +981 -101
  21. data/docs/LegalEntitiesRecordAttributes.md +6 -0
  22. data/docs/LegalEntitySecFilingsResponse.md +58 -0
  23. data/docs/LegalEntitySecFilingsRow.md +44 -0
  24. data/docs/OrgDisclosureTrendResponse.md +58 -0
  25. data/docs/OrgDisclosureTrendRow.md +62 -0
  26. data/docs/OwnershipSourceCoverageResponse.md +58 -0
  27. data/docs/OwnershipSourceCoverageRow.md +62 -0
  28. data/docs/ProgramLicensingCandidatesRow.md +5 -1
  29. data/docs/ProgramsRow.md +1 -1
  30. data/docs/RwdConductorDeliveryResponse.md +58 -0
  31. data/docs/RwdConductorDeliveryRow.md +74 -0
  32. data/docs/RwdConductorFootprintResponse.md +58 -0
  33. data/docs/RwdConductorFootprintRow.md +40 -0
  34. data/docs/RwdConductorStudiesResponse.md +58 -0
  35. data/docs/RwdConductorStudiesRow.md +42 -0
  36. data/docs/RwdConductorsApi.md +393 -0
  37. data/docs/RwdConductorsRecord.md +38 -0
  38. data/docs/RwdConductorsResponse.md +58 -0
  39. data/docs/RwdConductorsRow.md +72 -0
  40. data/docs/RwdInstitutionsApi.md +153 -0
  41. data/docs/RwdInstitutionsRecord.md +38 -0
  42. data/docs/RwdInstitutionsResponse.md +58 -0
  43. data/docs/RwdInstitutionsRow.md +154 -0
  44. data/docs/RwdNetworksApi.md +153 -0
  45. data/docs/RwdNetworksRecord.md +38 -0
  46. data/docs/RwdNetworksResponse.md +58 -0
  47. data/docs/RwdNetworksRow.md +110 -0
  48. data/docs/RwdStudiesApi.md +80 -0
  49. data/docs/SbtiCrosscheckResponse.md +58 -0
  50. data/docs/SbtiCrosscheckRow.md +48 -0
  51. data/docs/SponsorDeliveryResponse.md +58 -0
  52. data/docs/SponsorDeliveryRow.md +52 -0
  53. data/docs/SponsorPatentMentionsResponse.md +58 -0
  54. data/docs/SponsorPatentMentionsRow.md +42 -0
  55. data/docs/SponsorTrialConditionsResponse.md +58 -0
  56. data/docs/SponsorTrialConditionsRow.md +36 -0
  57. data/docs/SponsorTrialDrugsResponse.md +58 -0
  58. data/docs/SponsorTrialDrugsRow.md +34 -0
  59. data/lib/pharmaobservatory/api/biomarkers_api.rb +336 -0
  60. data/lib/pharmaobservatory/api/companies_api.rb +1131 -130
  61. data/lib/pharmaobservatory/api/legal_entities_api.rb +1047 -123
  62. data/lib/pharmaobservatory/api/rwd_conductors_api.rb +413 -0
  63. data/lib/pharmaobservatory/api/rwd_institutions_api.rb +161 -0
  64. data/lib/pharmaobservatory/api/rwd_networks_api.rb +161 -0
  65. data/lib/pharmaobservatory/api/rwd_studies_api.rb +84 -0
  66. data/lib/pharmaobservatory/models/biomarker_allele_frequencies_response.rb +478 -0
  67. data/lib/pharmaobservatory/models/biomarker_allele_frequencies_row.rb +465 -0
  68. data/lib/pharmaobservatory/models/biomarker_assay_providers_response.rb +478 -0
  69. data/lib/pharmaobservatory/models/biomarker_assay_providers_row.rb +520 -0
  70. data/lib/pharmaobservatory/models/biomarker_evidence_by_year_response.rb +478 -0
  71. data/lib/pharmaobservatory/models/biomarker_evidence_by_year_row.rb +300 -0
  72. data/lib/pharmaobservatory/models/biomarker_traversal_status_response.rb +478 -0
  73. data/lib/pharmaobservatory/models/biomarker_traversal_status_row.rb +322 -0
  74. data/lib/pharmaobservatory/models/company_assets_row.rb +24 -2
  75. data/lib/pharmaobservatory/models/company_biomarker_capability_response.rb +478 -0
  76. data/lib/pharmaobservatory/models/company_biomarker_capability_row.rb +498 -0
  77. data/lib/pharmaobservatory/models/company_programs_row.rb +24 -2
  78. data/lib/pharmaobservatory/models/company_rare_disease_declarations_response.rb +478 -0
  79. data/lib/pharmaobservatory/models/company_rare_disease_declarations_row.rb +410 -0
  80. data/lib/pharmaobservatory/models/gxp_facilities_row.rb +122 -1
  81. data/lib/pharmaobservatory/models/legal_entities_record_attributes.rb +28 -1
  82. data/lib/pharmaobservatory/models/legal_entity_sec_filings_response.rb +478 -0
  83. data/lib/pharmaobservatory/models/legal_entity_sec_filings_row.rb +370 -0
  84. data/lib/pharmaobservatory/models/org_disclosure_trend_response.rb +478 -0
  85. data/lib/pharmaobservatory/models/org_disclosure_trend_row.rb +465 -0
  86. data/lib/pharmaobservatory/models/ownership_source_coverage_response.rb +478 -0
  87. data/lib/pharmaobservatory/models/ownership_source_coverage_row.rb +465 -0
  88. data/lib/pharmaobservatory/models/program_licensing_candidates_row.rb +24 -2
  89. data/lib/pharmaobservatory/models/programs_row.rb +1 -1
  90. data/lib/pharmaobservatory/models/rwd_conductor_delivery_response.rb +478 -0
  91. data/lib/pharmaobservatory/models/rwd_conductor_delivery_row.rb +537 -0
  92. data/lib/pharmaobservatory/models/rwd_conductor_footprint_response.rb +478 -0
  93. data/lib/pharmaobservatory/models/rwd_conductor_footprint_row.rb +346 -0
  94. data/lib/pharmaobservatory/models/rwd_conductor_studies_response.rb +478 -0
  95. data/lib/pharmaobservatory/models/rwd_conductor_studies_row.rb +355 -0
  96. data/lib/pharmaobservatory/models/rwd_conductors_record.rb +385 -0
  97. data/lib/pharmaobservatory/models/rwd_conductors_response.rb +478 -0
  98. data/lib/pharmaobservatory/models/rwd_conductors_row.rb +526 -0
  99. data/lib/pharmaobservatory/models/rwd_institutions_record.rb +385 -0
  100. data/lib/pharmaobservatory/models/rwd_institutions_response.rb +478 -0
  101. data/lib/pharmaobservatory/models/rwd_institutions_row.rb +981 -0
  102. data/lib/pharmaobservatory/models/rwd_networks_record.rb +385 -0
  103. data/lib/pharmaobservatory/models/rwd_networks_response.rb +478 -0
  104. data/lib/pharmaobservatory/models/rwd_networks_row.rb +733 -0
  105. data/lib/pharmaobservatory/models/sbti_crosscheck_response.rb +478 -0
  106. data/lib/pharmaobservatory/models/sbti_crosscheck_row.rb +388 -0
  107. data/lib/pharmaobservatory/models/sponsor_delivery_response.rb +478 -0
  108. data/lib/pharmaobservatory/models/sponsor_delivery_row.rb +410 -0
  109. data/lib/pharmaobservatory/models/sponsor_patent_mentions_response.rb +478 -0
  110. data/lib/pharmaobservatory/models/sponsor_patent_mentions_row.rb +355 -0
  111. data/lib/pharmaobservatory/models/sponsor_trial_conditions_response.rb +478 -0
  112. data/lib/pharmaobservatory/models/sponsor_trial_conditions_row.rb +322 -0
  113. data/lib/pharmaobservatory/models/sponsor_trial_drugs_response.rb +478 -0
  114. data/lib/pharmaobservatory/models/sponsor_trial_drugs_row.rb +311 -0
  115. data/lib/pharmaobservatory/version.rb +1 -1
  116. data/lib/pharmaobservatory.rb +46 -0
  117. metadata +94 -2
@@ -0,0 +1,32 @@
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+ # PharmaObservatory::BiomarkerEvidenceByYearRow
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+
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+ ## Properties
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+
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+ | Name | Type | Description | Notes |
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+ | ---- | ---- | ----------- | ----- |
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+ | **route_key** | **String** | The gene's route key, the entry key for the biomarkers object type; the gene symbol. | [optional] |
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+ | **gene_symbol** | **String** | The gene symbol. | [optional] |
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+ | **evidence_type** | **String** | The evidence arm. trial_mention counts trials that mention the gene (the year is the trial start year); publication_mention counts papers cited by registered trials that mention it (the year is the publication year). | [optional] |
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+ | **evidence_year** | **Integer** | The year of the mentions. Null for the undated class. | [optional] |
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+ | **year_class** | **String** | How the year is treated. plotted: inside the window the web chart draws. pre_window: before 1990. future_dated: after the current year. corpus_incomplete: after the latest year the arm's corpus covers. undated: the source has no year. | [optional] |
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+ | **n_mentions** | **Integer** | Mentions of the gene in that arm, year and class. A document that mentions the gene more than once counts once per mention. | [optional] |
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+ | **n_documents** | **Integer** | Distinct documents (trials or papers) that mention the gene in that arm, year and class. | [optional] |
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+ | **year_denominator** | **Integer** | Distinct documents in that arm and year that mention any gene, the denominator of the gene's share of the year. | [optional] |
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+
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+ ## Example
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+
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+ ```ruby
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+ require 'pharmaobservatory'
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+
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+ instance = PharmaObservatory::BiomarkerEvidenceByYearRow.new(
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+ route_key: null,
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+ gene_symbol: null,
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+ evidence_type: null,
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+ evidence_year: null,
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+ year_class: null,
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+ n_mentions: null,
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+ n_documents: null,
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+ year_denominator: null
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+ )
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+ ```
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+
@@ -0,0 +1,58 @@
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+ # PharmaObservatory::BiomarkerTraversalStatusResponse
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+
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+ ## Properties
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+
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+ | Name | Type | Description | Notes |
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+ | ---- | ---- | ----------- | ----- |
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+ | **dataset** | **String** | | |
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+ | **grain** | **String** | | [optional] |
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+ | **object_type** | **String** | | [optional] |
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+ | **id** | **String** | | [optional] |
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+ | **scope** | [**BiomarkerAssayEvidenceResponseScope**](BiomarkerAssayEvidenceResponseScope.md) | | [optional] |
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+ | **columns** | [**Array<DatasetColumn>**](DatasetColumn.md) | | |
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+ | **rows** | [**Array<BiomarkerTraversalStatusRow>**](BiomarkerTraversalStatusRow.md) | | |
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+ | **total** | **Integer** | The exact count of the filtered rows on an ungrouped read, carried by the cursor; null when grouped. | [optional] |
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+ | **next_cursor** | **String** | | [optional] |
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+ | **sort** | **Array<String>** | | [optional] |
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+ | **filters** | **Array<Hash<String, Object>>** | | [optional] |
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+ | **group_by** | **Array<String>** | | [optional] |
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+ | **measures** | **Array<String>** | | [optional] |
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+ | **attribution** | [**Array<DatasetAttribution>**](DatasetAttribution.md) | | [optional] |
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+ | **source_credit** | **String** | | [optional] |
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+ | **withheld_tiers** | **Array<String>** | | [optional] |
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+ | **withheld_columns** | **Array<String>** | | [optional] |
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+ | **freshness** | [**BiomarkerAssayEvidenceResponseFreshness**](BiomarkerAssayEvidenceResponseFreshness.md) | | [optional] |
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+ | **build** | [**BiomarkerAssayEvidenceResponseBuild**](BiomarkerAssayEvidenceResponseBuild.md) | | [optional] |
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+ | **build_state** | [**DatasetBuildState**](DatasetBuildState.md) | | [optional] |
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+ | **restriction** | **Hash<String, Object>** | | [optional] |
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+
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+ ## Example
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+
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+ ```ruby
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+ require 'pharmaobservatory'
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+
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+ instance = PharmaObservatory::BiomarkerTraversalStatusResponse.new(
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+ dataset: null,
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+ grain: null,
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+ object_type: null,
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+ id: null,
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+ scope: null,
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+ columns: null,
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+ rows: null,
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+ total: null,
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+ next_cursor: null,
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+ sort: null,
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+ filters: null,
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+ group_by: null,
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+ measures: null,
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+ attribution: null,
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+ source_credit: null,
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+ withheld_tiers: null,
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+ withheld_columns: null,
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+ freshness: null,
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+ build: null,
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+ build_state: null,
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+ restriction: null
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+ )
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+ ```
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+
@@ -0,0 +1,36 @@
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+ # PharmaObservatory::BiomarkerTraversalStatusRow
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+
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+ ## Properties
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+
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+ | Name | Type | Description | Notes |
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+ | ---- | ---- | ----------- | ----- |
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+ | **route_key** | **String** | The biomarker's route key, the entry key for the biomarkers object type. | [optional] |
8
+ | **biomarker_id** | **String** | The biomarker's own key. | [optional] |
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+ | **biomarker_kind** | **String** | What kind of biomarker the row describes. | [optional] |
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+ | **traversal_key** | **String** | The traversal. | [optional] |
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+ | **display_order** | **Integer** | The order the web page lists the traversals in, one to nine. | [optional] |
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+ | **traversal_name** | **String** | The traversal's display name. | [optional] |
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+ | **applicability_state** | **String** | applicable: measured for this kind of biomarker. inapplicable: does not apply to this kind. not_measured: applies in principle but the corpus is not mined for this kind yet. | [optional] |
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+ | **context_mode** | **String** | How the traversal reads for this biomarker. direct: its own rows. parent_gene: the variant's gene rows. parent_and_exact: the gene's rows plus the exact variant's. child_variants: the gene's variant children. source_linked: shown when a source assertion resolves to it. bridge_deferred: depends on a bridge that has not landed. none: no traversal. | [optional] |
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+ | **reason_code** | **String** | The code behind the applicability state and context mode; state_detail is its sentence. | [optional] |
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+ | **state_detail** | **String** | The sentence the web page prints for the reason code. | [optional] |
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+
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+ ## Example
19
+
20
+ ```ruby
21
+ require 'pharmaobservatory'
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+
23
+ instance = PharmaObservatory::BiomarkerTraversalStatusRow.new(
24
+ route_key: null,
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+ biomarker_id: null,
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+ biomarker_kind: null,
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+ traversal_key: null,
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+ display_order: null,
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+ traversal_name: null,
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+ applicability_state: null,
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+ context_mode: null,
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+ reason_code: null,
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+ state_detail: null
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+ )
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+ ```
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+
@@ -4,22 +4,105 @@ All URIs are relative to *https://pharmaobservatory.com*
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  | Method | HTTP request | Description |
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  | ------ | ------------ | ----------- |
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+ | [**biomarkers_biomarker_allele_frequencies**](BiomarkersApi.md#biomarkers_biomarker_allele_frequencies) | **GET** /api/v1/biomarkers/{id}/biomarker_allele_frequencies | Population allele frequency of protein variants (gnomAD) |
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  | [**biomarkers_biomarker_assay_evidence**](BiomarkersApi.md#biomarkers_biomarker_assay_evidence) | **GET** /api/v1/biomarkers/{id}/biomarker_assay_evidence | Biomarker assay evidence from the literature |
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+ | [**biomarkers_biomarker_assay_providers**](BiomarkersApi.md#biomarkers_biomarker_assay_providers) | **GET** /api/v1/biomarkers/{id}/biomarker_assay_providers | Biomarker assay providers (from validating papers) |
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  | [**biomarkers_biomarker_assay_whitespace**](BiomarkersApi.md#biomarkers_biomarker_assay_whitespace) | **GET** /api/v1/biomarkers/{id}/biomarker_assay_whitespace | Biomarker assay whitespace (evidence against supplier supply) |
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  | [**biomarkers_biomarker_bqp_assertions**](BiomarkersApi.md#biomarkers_biomarker_bqp_assertions) | **GET** /api/v1/biomarkers/{id}/biomarker_bqp_assertions | FDA biomarker qualification projects |
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  | [**biomarkers_biomarker_cdx_assertions**](BiomarkersApi.md#biomarkers_biomarker_cdx_assertions) | **GET** /api/v1/biomarkers/{id}/biomarker_cdx_assertions | FDA companion diagnostic assertions |
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  | [**biomarkers_biomarker_evidence**](BiomarkersApi.md#biomarkers_biomarker_evidence) | **GET** /api/v1/biomarkers/{id}/biomarker_evidence | Biomarker evidence |
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+ | [**biomarkers_biomarker_evidence_by_year**](BiomarkersApi.md#biomarkers_biomarker_evidence_by_year) | **GET** /api/v1/biomarkers/{id}/biomarker_evidence_by_year | Biomarker evidence by year (trial and publication mentions) |
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  | [**biomarkers_biomarker_literature**](BiomarkersApi.md#biomarkers_biomarker_literature) | **GET** /api/v1/biomarkers/{id}/biomarker_literature | Trial-cited literature mentions |
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  | [**biomarkers_biomarker_publishing_companies**](BiomarkersApi.md#biomarkers_biomarker_publishing_companies) | **GET** /api/v1/biomarkers/{id}/biomarker_publishing_companies | Companies publishing on a biomarker |
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  | [**biomarkers_biomarker_relations**](BiomarkersApi.md#biomarkers_biomarker_relations) | **GET** /api/v1/biomarkers/{id}/biomarker_relations | Literature-extracted relations |
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  | [**biomarkers_biomarker_sample_coverage**](BiomarkersApi.md#biomarkers_biomarker_sample_coverage) | **GET** /api/v1/biomarkers/{id}/biomarker_sample_coverage | Human sample screening coverage (GDC) |
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  | [**biomarkers_biomarker_sample_prevalence**](BiomarkersApi.md#biomarkers_biomarker_sample_prevalence) | **GET** /api/v1/biomarkers/{id}/biomarker_sample_prevalence | Human sample screening reference (GDC cohorts) |
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+ | [**biomarkers_biomarker_traversal_status**](BiomarkersApi.md#biomarkers_biomarker_traversal_status) | **GET** /api/v1/biomarkers/{id}/biomarker_traversal_status | Biomarker coverage by traversal |
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  | [**biomarkers_biomarker_validation**](BiomarkersApi.md#biomarkers_biomarker_validation) | **GET** /api/v1/biomarkers/{id}/biomarker_validation | Biomarker validation ladder |
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  | [**biomarkers_biomarker_variant_mentions**](BiomarkersApi.md#biomarkers_biomarker_variant_mentions) | **GET** /api/v1/biomarkers/{id}/biomarker_variant_mentions | Protein variant mentions |
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  | [**biomarkers_get**](BiomarkersApi.md#biomarkers_get) | **GET** /api/v1/biomarkers/{id} | One biomarker |
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  | [**biomarkers_list**](BiomarkersApi.md#biomarkers_list) | **GET** /api/v1/biomarkers | List biomarkers |
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+ ## biomarkers_biomarker_allele_frequencies
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+
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+ > <BiomarkerAlleleFrequenciesResponse> biomarkers_biomarker_allele_frequencies(id, opts)
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+
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+ Population allele frequency of protein variants (gnomAD)
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+
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+ ### Examples
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+
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+ ```ruby
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+ require 'time'
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+ require 'pharmaobservatory'
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+ # setup authorization
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+ PharmaObservatory.configure do |config|
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+ # Configure Bearer authorization (JWT): ApiBearerJwt
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+ config.access_token = 'YOUR_BEARER_TOKEN'
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+ end
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+
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+ api_instance = PharmaObservatory::BiomarkersApi.new
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+ id = 'ESR1' # String |
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+ opts = {
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+ cursor: 'cursor_example', # String | The next_cursor of the previous page. Opaque; it is bound to the filters and the warehouse build that issued it.
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+ limit: 56, # Integer | Rows per page, up to 500 (default 50).
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+ sort: 'sort_example', # String | Comma separated columns, a leading minus for descending: sort=a,-b.
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+ group_by: 'group_by_example', # String | A dimension to group by; a date takes :year, :quarter or :month.
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+ measure: 'measure_example' # String | count, sum(col), avg(col), min(col), max(col), median(col) or count_distinct(col).
52
+ }
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+
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+ begin
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+ # Population allele frequency of protein variants (gnomAD)
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+ result = api_instance.biomarkers_biomarker_allele_frequencies(id, opts)
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+ p result
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+ rescue PharmaObservatory::ApiError => e
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+ puts "Error when calling BiomarkersApi->biomarkers_biomarker_allele_frequencies: #{e}"
60
+ end
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+ ```
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+
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+ #### Using the biomarkers_biomarker_allele_frequencies_with_http_info variant
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+
65
+ This returns an Array which contains the response data, status code and headers.
66
+
67
+ > <Array(<BiomarkerAlleleFrequenciesResponse>, Integer, Hash)> biomarkers_biomarker_allele_frequencies_with_http_info(id, opts)
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+
69
+ ```ruby
70
+ begin
71
+ # Population allele frequency of protein variants (gnomAD)
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+ data, status_code, headers = api_instance.biomarkers_biomarker_allele_frequencies_with_http_info(id, opts)
73
+ p status_code # => 2xx
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+ p headers # => { ... }
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+ p data # => <BiomarkerAlleleFrequenciesResponse>
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+ rescue PharmaObservatory::ApiError => e
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+ puts "Error when calling BiomarkersApi->biomarkers_biomarker_allele_frequencies_with_http_info: #{e}"
78
+ end
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+ ```
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+
81
+ ### Parameters
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+
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+ | Name | Type | Description | Notes |
84
+ | ---- | ---- | ----------- | ----- |
85
+ | **id** | **String** | | |
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+ | **cursor** | **String** | The next_cursor of the previous page. Opaque; it is bound to the filters and the warehouse build that issued it. | [optional] |
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+ | **limit** | **Integer** | Rows per page, up to 500 (default 50). | [optional] |
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+ | **sort** | **String** | Comma separated columns, a leading minus for descending: sort&#x3D;a,-b. | [optional] |
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+ | **group_by** | **String** | A dimension to group by; a date takes :year, :quarter or :month. | [optional] |
90
+ | **measure** | **String** | count, sum(col), avg(col), min(col), max(col), median(col) or count_distinct(col). | [optional] |
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+
92
+ ### Return type
93
+
94
+ [**BiomarkerAlleleFrequenciesResponse**](BiomarkerAlleleFrequenciesResponse.md)
95
+
96
+ ### Authorization
97
+
98
+ [ApiBearerJwt](../README.md#ApiBearerJwt)
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+
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+ ### HTTP request headers
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+
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+ - **Content-Type**: Not defined
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+ - **Accept**: application/json
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+
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+
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  ## biomarkers_biomarker_assay_evidence
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25
108
  > <BiomarkerAssayEvidenceResponse> biomarkers_biomarker_assay_evidence(id, opts)
@@ -99,6 +182,85 @@ end
99
182
  - **Accept**: application/json
100
183
 
101
184
 
185
+ ## biomarkers_biomarker_assay_providers
186
+
187
+ > <BiomarkerAssayProvidersResponse> biomarkers_biomarker_assay_providers(id, opts)
188
+
189
+ Biomarker assay providers (from validating papers)
190
+
191
+ ### Examples
192
+
193
+ ```ruby
194
+ require 'time'
195
+ require 'pharmaobservatory'
196
+ # setup authorization
197
+ PharmaObservatory.configure do |config|
198
+ # Configure Bearer authorization (JWT): ApiBearerJwt
199
+ config.access_token = 'YOUR_BEARER_TOKEN'
200
+ end
201
+
202
+ api_instance = PharmaObservatory::BiomarkersApi.new
203
+ id = 'ESR1' # String |
204
+ opts = {
205
+ cursor: 'cursor_example', # String | The next_cursor of the previous page. Opaque; it is bound to the filters and the warehouse build that issued it.
206
+ limit: 56, # Integer | Rows per page, up to 500 (default 50).
207
+ sort: 'sort_example', # String | Comma separated columns, a leading minus for descending: sort=a,-b.
208
+ group_by: 'group_by_example', # String | A dimension to group by; a date takes :year, :quarter or :month.
209
+ measure: 'measure_example' # String | count, sum(col), avg(col), min(col), max(col), median(col) or count_distinct(col).
210
+ }
211
+
212
+ begin
213
+ # Biomarker assay providers (from validating papers)
214
+ result = api_instance.biomarkers_biomarker_assay_providers(id, opts)
215
+ p result
216
+ rescue PharmaObservatory::ApiError => e
217
+ puts "Error when calling BiomarkersApi->biomarkers_biomarker_assay_providers: #{e}"
218
+ end
219
+ ```
220
+
221
+ #### Using the biomarkers_biomarker_assay_providers_with_http_info variant
222
+
223
+ This returns an Array which contains the response data, status code and headers.
224
+
225
+ > <Array(<BiomarkerAssayProvidersResponse>, Integer, Hash)> biomarkers_biomarker_assay_providers_with_http_info(id, opts)
226
+
227
+ ```ruby
228
+ begin
229
+ # Biomarker assay providers (from validating papers)
230
+ data, status_code, headers = api_instance.biomarkers_biomarker_assay_providers_with_http_info(id, opts)
231
+ p status_code # => 2xx
232
+ p headers # => { ... }
233
+ p data # => <BiomarkerAssayProvidersResponse>
234
+ rescue PharmaObservatory::ApiError => e
235
+ puts "Error when calling BiomarkersApi->biomarkers_biomarker_assay_providers_with_http_info: #{e}"
236
+ end
237
+ ```
238
+
239
+ ### Parameters
240
+
241
+ | Name | Type | Description | Notes |
242
+ | ---- | ---- | ----------- | ----- |
243
+ | **id** | **String** | | |
244
+ | **cursor** | **String** | The next_cursor of the previous page. Opaque; it is bound to the filters and the warehouse build that issued it. | [optional] |
245
+ | **limit** | **Integer** | Rows per page, up to 500 (default 50). | [optional] |
246
+ | **sort** | **String** | Comma separated columns, a leading minus for descending: sort&#x3D;a,-b. | [optional] |
247
+ | **group_by** | **String** | A dimension to group by; a date takes :year, :quarter or :month. | [optional] |
248
+ | **measure** | **String** | count, sum(col), avg(col), min(col), max(col), median(col) or count_distinct(col). | [optional] |
249
+
250
+ ### Return type
251
+
252
+ [**BiomarkerAssayProvidersResponse**](BiomarkerAssayProvidersResponse.md)
253
+
254
+ ### Authorization
255
+
256
+ [ApiBearerJwt](../README.md#ApiBearerJwt)
257
+
258
+ ### HTTP request headers
259
+
260
+ - **Content-Type**: Not defined
261
+ - **Accept**: application/json
262
+
263
+
102
264
  ## biomarkers_biomarker_assay_whitespace
103
265
 
104
266
  > <BiomarkerAssayWhitespaceResponse> biomarkers_biomarker_assay_whitespace(id, opts)
@@ -415,6 +577,85 @@ end
415
577
  - **Accept**: application/json
416
578
 
417
579
 
580
+ ## biomarkers_biomarker_evidence_by_year
581
+
582
+ > <BiomarkerEvidenceByYearResponse> biomarkers_biomarker_evidence_by_year(id, opts)
583
+
584
+ Biomarker evidence by year (trial and publication mentions)
585
+
586
+ ### Examples
587
+
588
+ ```ruby
589
+ require 'time'
590
+ require 'pharmaobservatory'
591
+ # setup authorization
592
+ PharmaObservatory.configure do |config|
593
+ # Configure Bearer authorization (JWT): ApiBearerJwt
594
+ config.access_token = 'YOUR_BEARER_TOKEN'
595
+ end
596
+
597
+ api_instance = PharmaObservatory::BiomarkersApi.new
598
+ id = 'ESR1' # String |
599
+ opts = {
600
+ cursor: 'cursor_example', # String | The next_cursor of the previous page. Opaque; it is bound to the filters and the warehouse build that issued it.
601
+ limit: 56, # Integer | Rows per page, up to 500 (default 50).
602
+ sort: 'sort_example', # String | Comma separated columns, a leading minus for descending: sort=a,-b.
603
+ group_by: 'group_by_example', # String | A dimension to group by; a date takes :year, :quarter or :month.
604
+ measure: 'measure_example' # String | count, sum(col), avg(col), min(col), max(col), median(col) or count_distinct(col).
605
+ }
606
+
607
+ begin
608
+ # Biomarker evidence by year (trial and publication mentions)
609
+ result = api_instance.biomarkers_biomarker_evidence_by_year(id, opts)
610
+ p result
611
+ rescue PharmaObservatory::ApiError => e
612
+ puts "Error when calling BiomarkersApi->biomarkers_biomarker_evidence_by_year: #{e}"
613
+ end
614
+ ```
615
+
616
+ #### Using the biomarkers_biomarker_evidence_by_year_with_http_info variant
617
+
618
+ This returns an Array which contains the response data, status code and headers.
619
+
620
+ > <Array(<BiomarkerEvidenceByYearResponse>, Integer, Hash)> biomarkers_biomarker_evidence_by_year_with_http_info(id, opts)
621
+
622
+ ```ruby
623
+ begin
624
+ # Biomarker evidence by year (trial and publication mentions)
625
+ data, status_code, headers = api_instance.biomarkers_biomarker_evidence_by_year_with_http_info(id, opts)
626
+ p status_code # => 2xx
627
+ p headers # => { ... }
628
+ p data # => <BiomarkerEvidenceByYearResponse>
629
+ rescue PharmaObservatory::ApiError => e
630
+ puts "Error when calling BiomarkersApi->biomarkers_biomarker_evidence_by_year_with_http_info: #{e}"
631
+ end
632
+ ```
633
+
634
+ ### Parameters
635
+
636
+ | Name | Type | Description | Notes |
637
+ | ---- | ---- | ----------- | ----- |
638
+ | **id** | **String** | | |
639
+ | **cursor** | **String** | The next_cursor of the previous page. Opaque; it is bound to the filters and the warehouse build that issued it. | [optional] |
640
+ | **limit** | **Integer** | Rows per page, up to 500 (default 50). | [optional] |
641
+ | **sort** | **String** | Comma separated columns, a leading minus for descending: sort&#x3D;a,-b. | [optional] |
642
+ | **group_by** | **String** | A dimension to group by; a date takes :year, :quarter or :month. | [optional] |
643
+ | **measure** | **String** | count, sum(col), avg(col), min(col), max(col), median(col) or count_distinct(col). | [optional] |
644
+
645
+ ### Return type
646
+
647
+ [**BiomarkerEvidenceByYearResponse**](BiomarkerEvidenceByYearResponse.md)
648
+
649
+ ### Authorization
650
+
651
+ [ApiBearerJwt](../README.md#ApiBearerJwt)
652
+
653
+ ### HTTP request headers
654
+
655
+ - **Content-Type**: Not defined
656
+ - **Accept**: application/json
657
+
658
+
418
659
  ## biomarkers_biomarker_literature
419
660
 
420
661
  > <BiomarkerLiteratureResponse> biomarkers_biomarker_literature(id, opts)
@@ -810,6 +1051,85 @@ end
810
1051
  - **Accept**: application/json
811
1052
 
812
1053
 
1054
+ ## biomarkers_biomarker_traversal_status
1055
+
1056
+ > <BiomarkerTraversalStatusResponse> biomarkers_biomarker_traversal_status(id, opts)
1057
+
1058
+ Biomarker coverage by traversal
1059
+
1060
+ ### Examples
1061
+
1062
+ ```ruby
1063
+ require 'time'
1064
+ require 'pharmaobservatory'
1065
+ # setup authorization
1066
+ PharmaObservatory.configure do |config|
1067
+ # Configure Bearer authorization (JWT): ApiBearerJwt
1068
+ config.access_token = 'YOUR_BEARER_TOKEN'
1069
+ end
1070
+
1071
+ api_instance = PharmaObservatory::BiomarkersApi.new
1072
+ id = 'ESR1' # String |
1073
+ opts = {
1074
+ cursor: 'cursor_example', # String | The next_cursor of the previous page. Opaque; it is bound to the filters and the warehouse build that issued it.
1075
+ limit: 56, # Integer | Rows per page, up to 500 (default 50).
1076
+ sort: 'sort_example', # String | Comma separated columns, a leading minus for descending: sort=a,-b.
1077
+ group_by: 'group_by_example', # String | A dimension to group by; a date takes :year, :quarter or :month.
1078
+ measure: 'measure_example' # String | count, sum(col), avg(col), min(col), max(col), median(col) or count_distinct(col).
1079
+ }
1080
+
1081
+ begin
1082
+ # Biomarker coverage by traversal
1083
+ result = api_instance.biomarkers_biomarker_traversal_status(id, opts)
1084
+ p result
1085
+ rescue PharmaObservatory::ApiError => e
1086
+ puts "Error when calling BiomarkersApi->biomarkers_biomarker_traversal_status: #{e}"
1087
+ end
1088
+ ```
1089
+
1090
+ #### Using the biomarkers_biomarker_traversal_status_with_http_info variant
1091
+
1092
+ This returns an Array which contains the response data, status code and headers.
1093
+
1094
+ > <Array(<BiomarkerTraversalStatusResponse>, Integer, Hash)> biomarkers_biomarker_traversal_status_with_http_info(id, opts)
1095
+
1096
+ ```ruby
1097
+ begin
1098
+ # Biomarker coverage by traversal
1099
+ data, status_code, headers = api_instance.biomarkers_biomarker_traversal_status_with_http_info(id, opts)
1100
+ p status_code # => 2xx
1101
+ p headers # => { ... }
1102
+ p data # => <BiomarkerTraversalStatusResponse>
1103
+ rescue PharmaObservatory::ApiError => e
1104
+ puts "Error when calling BiomarkersApi->biomarkers_biomarker_traversal_status_with_http_info: #{e}"
1105
+ end
1106
+ ```
1107
+
1108
+ ### Parameters
1109
+
1110
+ | Name | Type | Description | Notes |
1111
+ | ---- | ---- | ----------- | ----- |
1112
+ | **id** | **String** | | |
1113
+ | **cursor** | **String** | The next_cursor of the previous page. Opaque; it is bound to the filters and the warehouse build that issued it. | [optional] |
1114
+ | **limit** | **Integer** | Rows per page, up to 500 (default 50). | [optional] |
1115
+ | **sort** | **String** | Comma separated columns, a leading minus for descending: sort&#x3D;a,-b. | [optional] |
1116
+ | **group_by** | **String** | A dimension to group by; a date takes :year, :quarter or :month. | [optional] |
1117
+ | **measure** | **String** | count, sum(col), avg(col), min(col), max(col), median(col) or count_distinct(col). | [optional] |
1118
+
1119
+ ### Return type
1120
+
1121
+ [**BiomarkerTraversalStatusResponse**](BiomarkerTraversalStatusResponse.md)
1122
+
1123
+ ### Authorization
1124
+
1125
+ [ApiBearerJwt](../README.md#ApiBearerJwt)
1126
+
1127
+ ### HTTP request headers
1128
+
1129
+ - **Content-Type**: Not defined
1130
+ - **Accept**: application/json
1131
+
1132
+
813
1133
  ## biomarkers_biomarker_validation
814
1134
 
815
1135
  > <BiomarkerValidationResponse> biomarkers_biomarker_validation(id, opts)