omf_web 0.9.9 → 1.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (64) hide show
  1. checksums.yaml +7 -0
  2. data/README.md +31 -0
  3. data/bin/omf_web_server.rb +157 -0
  4. data/doc/screenshot2.png +0 -0
  5. data/doc/widget_detail.png +0 -0
  6. data/example/demo/data_sources/downloads.rb +2 -1
  7. data/example/simple/README.md +12 -13
  8. data/example/simple/create_waveform.rb +29 -0
  9. data/example/simple/introduction.md +17 -0
  10. data/example/simple/sample.sq3 +0 -0
  11. data/example/simple/sample.sql +1008 -0
  12. data/example/simple/simple.yaml +62 -0
  13. data/example/simple/simple_dynamic.yaml +66 -0
  14. data/lib/irods4r/file.rb +15 -14
  15. data/lib/irods4r/icommands.rb +18 -18
  16. data/lib/irods4r.rb +9 -9
  17. data/lib/omf-web/config.ru +41 -16
  18. data/lib/omf-web/content/git_repository.rb +32 -31
  19. data/lib/omf-web/content/irods_repository.rb +34 -33
  20. data/lib/omf-web/content/repository.rb +48 -44
  21. data/lib/omf-web/data_source_proxy.rb +33 -22
  22. data/lib/omf-web/rack/session_authenticator.rb +48 -12
  23. data/lib/omf-web/rack/tab_mapper.rb +30 -36
  24. data/lib/omf-web/rack/websocket_handler.rb +26 -25
  25. data/lib/omf-web/session_store.rb +16 -13
  26. data/lib/omf-web/theme/abstract_page.rb +26 -22
  27. data/lib/omf-web/theme/bright/page.rb +84 -34
  28. data/lib/omf-web/theme/bright/stacked_renderer.rb +20 -19
  29. data/lib/omf-web/theme.rb +14 -9
  30. data/lib/omf-web/thin/runner.rb +38 -36
  31. data/lib/omf-web/thin/server.rb +255 -0
  32. data/lib/omf-web/version.rb +1 -1
  33. data/lib/omf-web/widget/data_widget.rb +6 -6
  34. data/lib/omf-web/widget/text/maruku/helpers.rb +33 -30
  35. data/lib/omf-web/widget/text/maruku/input/parse_block.rb +117 -117
  36. data/lib/omf-web/widget/text/maruku/output/to_html.rb +155 -154
  37. data/lib/omf-web/widget/text/maruku.rb +17 -16
  38. data/omf_web.gemspec +6 -2
  39. data/sample.sq3 +0 -0
  40. data/share/htdocs/graph/js/gauge.js +524 -0
  41. data/share/htdocs/vendor/VERSION_MAP.yaml +3 -3
  42. data/share/htdocs/vendor/backbone-1.0.0/backbone.js +1571 -0
  43. data/share/htdocs/vendor/d3-3.0/LICENSE.brewer.txt +38 -0
  44. data/share/htdocs/vendor/d3-3.0/colorbrewer.js +1 -0
  45. data/share/htdocs/vendor/d3-3.0/d3.js +8810 -0
  46. data/share/htdocs/vendor/d3-3.0/d3.min.js +5 -0
  47. data/share/htdocs/vendor/geo_json/Readme.txt +71 -0
  48. data/share/htdocs/vendor/geo_json/regions.json +41 -0
  49. data/share/htdocs/vendor/geo_json/switzerland.json +24 -0
  50. data/share/htdocs/vendor/geo_json/world.json +497 -0
  51. data/share/htdocs/vendor/nv_d3/js/nv.d3.js +8801 -4447
  52. data/share/htdocs/vendor/spin/jquery.spin.js +46 -0
  53. data/share/htdocs/vendor/spin/spin.js +349 -0
  54. data/share/htdocs/vendor/spin/spin.min.js +1 -0
  55. data/share/htdocs/vendor/underscore-1.4.4/underscore.js +1227 -0
  56. metadata +63 -48
  57. data/example/simple/data_sources/gimi31.sq3 +0 -0
  58. data/example/simple/data_sources/ping_source.rb +0 -56
  59. data/example/simple/simple_viz_server.rb +0 -39
  60. data/example/simple/widgets/charts_tab.yaml +0 -38
  61. data/share/.DS_Store +0 -0
  62. data/share/htdocs/.DS_Store +0 -0
  63. data/share/htdocs/vendor/backbone-0.5.3/backbone.js +0 -1158
  64. data/share/htdocs/vendor/underscore-1.2.1/underscore.js +0 -958
@@ -2,17 +2,17 @@
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  # Copyright (C) 2006 Andrea Censi <andrea (at) rubyforge.org>
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  #
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  # This file is part of Maruku.
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- #
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+ #
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  # Maruku is free software; you can redistribute it and/or modify
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  # it under the terms of the GNU General Public License as published by
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  # the Free Software Foundation; either version 2 of the License, or
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  # (at your option) any later version.
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- #
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+ #
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  # Maruku is distributed in the hope that it will be useful,
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  # but WITHOUT ANY WARRANTY; without even the implied warranty of
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  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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  # GNU General Public License for more details.
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- #
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+ #
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  # You should have received a copy of the GNU General Public License
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  # along with Maruku; if not, write to the Free Software
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  # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
@@ -21,7 +21,7 @@
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- # A series of helper functions for creating elements: they hide the
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+ # A series of helper functions for creating elements: they hide the
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  # particular internal representation.
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  #
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  # Please, always use these instead of creating MDElement.
@@ -32,7 +32,7 @@ module Helpers
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  # if the first is a md_ial, it is used as such
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  def md_el(node_type, children=[], meta={}, al=nil)
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- if (e=children.first).kind_of?(MDElement) and
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+ if (e=children.first).kind_of?(MDElement) and
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  e.node_type == :ial then
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  if al
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  al += e.ial
@@ -40,7 +40,7 @@ module Helpers
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  al = e.ial
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  end
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  children.shift
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- end
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+ end
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  e = MDElement.new(node_type, children, meta, al)
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  e.doc = @doc
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  return e
@@ -49,7 +49,7 @@ module Helpers
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  def md_header(level, children, al=nil, line_no = -1)
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  md_el(:header, children, {:level => level, :line_no => line_no}, al)
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  end
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-
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+
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  # Inline code
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  def md_code(code, al=nil)
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  md_el(:inline_code, [], {:raw_code => code}, al)
@@ -79,7 +79,7 @@ module Helpers
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  def md_abbr(abbr, title)
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  md_el(:abbr, [abbr], {:title=>title})
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  end
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-
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+
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  def md_html(raw_html, al=nil)
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  e = md_el(:raw_html, [], {:raw_html=>raw_html})
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  begin
@@ -87,7 +87,7 @@ module Helpers
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  # end end of string, or else REXML gets confused
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  raw_html = raw_html.gsub(/\A\s*</,'<').
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  gsub(/>[\s\n]*\Z/,'>')
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-
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+
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  raw_html = "<marukuwrap>#{raw_html}</marukuwrap>"
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  e.instance_variable_set :@parsed_html,
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  REXML::Document.new(raw_html)
@@ -99,19 +99,21 @@ module Helpers
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  end
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  e
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  end
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-
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+
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  def md_link(children, ref_id, al=nil)
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+ #puts "LINK>>> '#{ref_id}'"
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  md_el(:link, children, {:ref_id=>ref_id.downcase}, al)
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  end
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-
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+
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  def md_im_link(children, url, title=nil, al=nil)
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+ #puts "IM_LINK>>> '#{url}'"
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  md_el(:im_link, children, {:url=>url,:title=>title}, al)
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  end
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-
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+
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  def md_image(children, ref_id, al=nil)
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  md_el(:image, children, {:ref_id=>ref_id}, al)
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  end
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-
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+
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  def md_im_image(children, url, title=nil, al=nil)
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  md_el(:im_image, children, {:url=>url,:title=>title},al)
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  end
@@ -138,24 +140,25 @@ module Helpers
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  # <http://www.example.com/>
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  def md_url(url, al=nil)
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+ #puts "URL>>> '#{url}'"
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  md_el(:immediate_link, [], {:url=>url}, al)
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  end
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-
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+
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  # <andrea@rubyforge.org>
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  # <mailto:andrea@rubyforge.org>
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  def md_email(email, al=nil)
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  md_el(:email_address, [], {:email=>email}, al)
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  end
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-
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+
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  def md_entity(entity_name, al=nil)
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  md_el(:entity, [], {:entity_name=>entity_name}, al)
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  end
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-
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+
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  # Markdown extra
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  def md_foot_ref(ref_id, al=nil)
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  md_el(:footnote_reference, [], {:footnote_id=>ref_id}, al)
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  end
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-
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+
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  def md_par(children, al=nil, line_no = -1)
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  #md_el(:paragraph, children, meta={}, al)
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  md_el(:paragraph, children, {:line_no => line_no}, al)
@@ -168,10 +171,10 @@ module Helpers
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  meta[:title] = title if title
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  md_el(:ref_definition, [], meta, al)
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  end
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-
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+
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  # inline attribute list
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  def md_ial(al)
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- al = Maruku::AttributeList.new(al) if
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+ al = Maruku::AttributeList.new(al) if
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  not al.kind_of?Maruku::AttributeList
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  md_el(:ial, [], {:ial=>al})
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  end
@@ -180,7 +183,7 @@ module Helpers
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  def md_ald(id, al)
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  md_el(:ald, [], {:ald_id=>id,:ald=>al})
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  end
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-
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+
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  # Server directive <?target code... ?>
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  def md_xml_instr(target, code)
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  md_el(:xml_instr, [], {:target=>target, :code=>code})
@@ -191,10 +194,10 @@ end
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  module MaRuKu
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- class MDElement
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+ class MDElement
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  # outputs abbreviated form (this should be eval()uable to get the document)
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- def inspect2
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- s =
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+ def inspect2
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+ s =
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  case @node_type
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  when :paragraph
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  "md_par(%s)" % children_inspect
@@ -208,7 +211,7 @@ class MDElement
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  "md_code(%s)" % self.raw_code.inspect
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  when :raw_html
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  "md_html(%s)" % self.raw_html.inspect
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- when :emphasis
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+ when :emphasis
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  "md_em(%s)" % children_inspect
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  when :strong
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  "md_strong(%s)" % children_inspect
@@ -216,11 +219,11 @@ class MDElement
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  "md_url(%s)" % self.url.inspect
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  when :image
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  "md_image(%s, %s)" % [
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- children_inspect,
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+ children_inspect,
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  self.ref_id.inspect]
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  when :im_image
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  "md_im_image(%s, %s, %s)" % [
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- children_inspect,
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+ children_inspect,
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  self.url.inspect,
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  self.title.inspect]
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  when :link
@@ -228,13 +231,13 @@ class MDElement
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  children_inspect, self.ref_id.inspect]
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  when :im_link
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  "md_im_link(%s, %s, %s)" % [
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- children_inspect,
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+ children_inspect,
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  self.url.inspect,
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  self.title.inspect,
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  ]
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  when :ref_definition
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  "md_ref_def(%s, %s, %s)" % [
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- self.ref_id.inspect,
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+ self.ref_id.inspect,
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  self.url.inspect,
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  self.title.inspect
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  ]
@@ -243,12 +246,12 @@ class MDElement
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  else
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  return nil
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  end
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- if @al and not @al.empty? then
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+ if @al and not @al.empty? then
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  s = s.chop + ", #{@al.inspect})"
248
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  end
249
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  s
250
253
  end
251
-
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+
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  end
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  end