omf_web 0.9.9 → 1.0.0

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Files changed (64) hide show
  1. checksums.yaml +7 -0
  2. data/README.md +31 -0
  3. data/bin/omf_web_server.rb +157 -0
  4. data/doc/screenshot2.png +0 -0
  5. data/doc/widget_detail.png +0 -0
  6. data/example/demo/data_sources/downloads.rb +2 -1
  7. data/example/simple/README.md +12 -13
  8. data/example/simple/create_waveform.rb +29 -0
  9. data/example/simple/introduction.md +17 -0
  10. data/example/simple/sample.sq3 +0 -0
  11. data/example/simple/sample.sql +1008 -0
  12. data/example/simple/simple.yaml +62 -0
  13. data/example/simple/simple_dynamic.yaml +66 -0
  14. data/lib/irods4r/file.rb +15 -14
  15. data/lib/irods4r/icommands.rb +18 -18
  16. data/lib/irods4r.rb +9 -9
  17. data/lib/omf-web/config.ru +41 -16
  18. data/lib/omf-web/content/git_repository.rb +32 -31
  19. data/lib/omf-web/content/irods_repository.rb +34 -33
  20. data/lib/omf-web/content/repository.rb +48 -44
  21. data/lib/omf-web/data_source_proxy.rb +33 -22
  22. data/lib/omf-web/rack/session_authenticator.rb +48 -12
  23. data/lib/omf-web/rack/tab_mapper.rb +30 -36
  24. data/lib/omf-web/rack/websocket_handler.rb +26 -25
  25. data/lib/omf-web/session_store.rb +16 -13
  26. data/lib/omf-web/theme/abstract_page.rb +26 -22
  27. data/lib/omf-web/theme/bright/page.rb +84 -34
  28. data/lib/omf-web/theme/bright/stacked_renderer.rb +20 -19
  29. data/lib/omf-web/theme.rb +14 -9
  30. data/lib/omf-web/thin/runner.rb +38 -36
  31. data/lib/omf-web/thin/server.rb +255 -0
  32. data/lib/omf-web/version.rb +1 -1
  33. data/lib/omf-web/widget/data_widget.rb +6 -6
  34. data/lib/omf-web/widget/text/maruku/helpers.rb +33 -30
  35. data/lib/omf-web/widget/text/maruku/input/parse_block.rb +117 -117
  36. data/lib/omf-web/widget/text/maruku/output/to_html.rb +155 -154
  37. data/lib/omf-web/widget/text/maruku.rb +17 -16
  38. data/omf_web.gemspec +6 -2
  39. data/sample.sq3 +0 -0
  40. data/share/htdocs/graph/js/gauge.js +524 -0
  41. data/share/htdocs/vendor/VERSION_MAP.yaml +3 -3
  42. data/share/htdocs/vendor/backbone-1.0.0/backbone.js +1571 -0
  43. data/share/htdocs/vendor/d3-3.0/LICENSE.brewer.txt +38 -0
  44. data/share/htdocs/vendor/d3-3.0/colorbrewer.js +1 -0
  45. data/share/htdocs/vendor/d3-3.0/d3.js +8810 -0
  46. data/share/htdocs/vendor/d3-3.0/d3.min.js +5 -0
  47. data/share/htdocs/vendor/geo_json/Readme.txt +71 -0
  48. data/share/htdocs/vendor/geo_json/regions.json +41 -0
  49. data/share/htdocs/vendor/geo_json/switzerland.json +24 -0
  50. data/share/htdocs/vendor/geo_json/world.json +497 -0
  51. data/share/htdocs/vendor/nv_d3/js/nv.d3.js +8801 -4447
  52. data/share/htdocs/vendor/spin/jquery.spin.js +46 -0
  53. data/share/htdocs/vendor/spin/spin.js +349 -0
  54. data/share/htdocs/vendor/spin/spin.min.js +1 -0
  55. data/share/htdocs/vendor/underscore-1.4.4/underscore.js +1227 -0
  56. metadata +63 -48
  57. data/example/simple/data_sources/gimi31.sq3 +0 -0
  58. data/example/simple/data_sources/ping_source.rb +0 -56
  59. data/example/simple/simple_viz_server.rb +0 -39
  60. data/example/simple/widgets/charts_tab.yaml +0 -38
  61. data/share/.DS_Store +0 -0
  62. data/share/htdocs/.DS_Store +0 -0
  63. data/share/htdocs/vendor/backbone-0.5.3/backbone.js +0 -1158
  64. data/share/htdocs/vendor/underscore-1.2.1/underscore.js +0 -958
@@ -2,17 +2,17 @@
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  # Copyright (C) 2006 Andrea Censi <andrea (at) rubyforge.org>
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  #
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  # This file is part of Maruku.
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- #
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+ #
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  # Maruku is free software; you can redistribute it and/or modify
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  # it under the terms of the GNU General Public License as published by
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  # the Free Software Foundation; either version 2 of the License, or
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  # (at your option) any later version.
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- #
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+ #
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  # Maruku is distributed in the hope that it will be useful,
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  # but WITHOUT ANY WARRANTY; without even the implied warranty of
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  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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  # GNU General Public License for more details.
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- #
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+ #
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  # You should have received a copy of the GNU General Public License
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  # along with Maruku; if not, write to the Free Software
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  # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
@@ -21,7 +21,7 @@
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- # A series of helper functions for creating elements: they hide the
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+ # A series of helper functions for creating elements: they hide the
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  # particular internal representation.
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  #
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  # Please, always use these instead of creating MDElement.
@@ -32,7 +32,7 @@ module Helpers
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  # if the first is a md_ial, it is used as such
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  def md_el(node_type, children=[], meta={}, al=nil)
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- if (e=children.first).kind_of?(MDElement) and
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+ if (e=children.first).kind_of?(MDElement) and
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  e.node_type == :ial then
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  if al
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  al += e.ial
@@ -40,7 +40,7 @@ module Helpers
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  al = e.ial
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  end
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  children.shift
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- end
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+ end
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  e = MDElement.new(node_type, children, meta, al)
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  e.doc = @doc
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  return e
@@ -49,7 +49,7 @@ module Helpers
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  def md_header(level, children, al=nil, line_no = -1)
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  md_el(:header, children, {:level => level, :line_no => line_no}, al)
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  end
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-
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+
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  # Inline code
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  def md_code(code, al=nil)
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  md_el(:inline_code, [], {:raw_code => code}, al)
@@ -79,7 +79,7 @@ module Helpers
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  def md_abbr(abbr, title)
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  md_el(:abbr, [abbr], {:title=>title})
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  end
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-
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+
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  def md_html(raw_html, al=nil)
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  e = md_el(:raw_html, [], {:raw_html=>raw_html})
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  begin
@@ -87,7 +87,7 @@ module Helpers
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  # end end of string, or else REXML gets confused
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  raw_html = raw_html.gsub(/\A\s*</,'<').
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  gsub(/>[\s\n]*\Z/,'>')
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-
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+
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  raw_html = "<marukuwrap>#{raw_html}</marukuwrap>"
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  e.instance_variable_set :@parsed_html,
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  REXML::Document.new(raw_html)
@@ -99,19 +99,21 @@ module Helpers
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  end
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  e
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  end
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-
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+
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  def md_link(children, ref_id, al=nil)
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+ #puts "LINK>>> '#{ref_id}'"
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  md_el(:link, children, {:ref_id=>ref_id.downcase}, al)
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  end
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-
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+
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  def md_im_link(children, url, title=nil, al=nil)
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+ #puts "IM_LINK>>> '#{url}'"
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  md_el(:im_link, children, {:url=>url,:title=>title}, al)
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  end
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-
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+
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  def md_image(children, ref_id, al=nil)
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  md_el(:image, children, {:ref_id=>ref_id}, al)
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  end
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-
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+
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  def md_im_image(children, url, title=nil, al=nil)
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  md_el(:im_image, children, {:url=>url,:title=>title},al)
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  end
@@ -138,24 +140,25 @@ module Helpers
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  # <http://www.example.com/>
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  def md_url(url, al=nil)
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+ #puts "URL>>> '#{url}'"
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  md_el(:immediate_link, [], {:url=>url}, al)
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  end
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-
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+
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  # <andrea@rubyforge.org>
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  # <mailto:andrea@rubyforge.org>
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  def md_email(email, al=nil)
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  md_el(:email_address, [], {:email=>email}, al)
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  end
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-
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+
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  def md_entity(entity_name, al=nil)
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  md_el(:entity, [], {:entity_name=>entity_name}, al)
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  end
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-
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+
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  # Markdown extra
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  def md_foot_ref(ref_id, al=nil)
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  md_el(:footnote_reference, [], {:footnote_id=>ref_id}, al)
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  end
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-
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+
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  def md_par(children, al=nil, line_no = -1)
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  #md_el(:paragraph, children, meta={}, al)
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  md_el(:paragraph, children, {:line_no => line_no}, al)
@@ -168,10 +171,10 @@ module Helpers
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  meta[:title] = title if title
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  md_el(:ref_definition, [], meta, al)
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  end
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-
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+
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  # inline attribute list
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  def md_ial(al)
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- al = Maruku::AttributeList.new(al) if
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+ al = Maruku::AttributeList.new(al) if
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  not al.kind_of?Maruku::AttributeList
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  md_el(:ial, [], {:ial=>al})
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  end
@@ -180,7 +183,7 @@ module Helpers
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  def md_ald(id, al)
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  md_el(:ald, [], {:ald_id=>id,:ald=>al})
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  end
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-
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+
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  # Server directive <?target code... ?>
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  def md_xml_instr(target, code)
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  md_el(:xml_instr, [], {:target=>target, :code=>code})
@@ -191,10 +194,10 @@ end
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  module MaRuKu
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- class MDElement
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+ class MDElement
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  # outputs abbreviated form (this should be eval()uable to get the document)
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- def inspect2
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- s =
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+ def inspect2
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+ s =
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  case @node_type
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  when :paragraph
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  "md_par(%s)" % children_inspect
@@ -208,7 +211,7 @@ class MDElement
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  "md_code(%s)" % self.raw_code.inspect
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  when :raw_html
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  "md_html(%s)" % self.raw_html.inspect
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- when :emphasis
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+ when :emphasis
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  "md_em(%s)" % children_inspect
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  when :strong
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  "md_strong(%s)" % children_inspect
@@ -216,11 +219,11 @@ class MDElement
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  "md_url(%s)" % self.url.inspect
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  when :image
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  "md_image(%s, %s)" % [
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- children_inspect,
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+ children_inspect,
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  self.ref_id.inspect]
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  when :im_image
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  "md_im_image(%s, %s, %s)" % [
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- children_inspect,
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+ children_inspect,
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  self.url.inspect,
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  self.title.inspect]
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  when :link
@@ -228,13 +231,13 @@ class MDElement
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  children_inspect, self.ref_id.inspect]
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  when :im_link
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  "md_im_link(%s, %s, %s)" % [
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- children_inspect,
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+ children_inspect,
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  self.url.inspect,
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  self.title.inspect,
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  ]
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  when :ref_definition
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  "md_ref_def(%s, %s, %s)" % [
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- self.ref_id.inspect,
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+ self.ref_id.inspect,
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  self.url.inspect,
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  self.title.inspect
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  ]
@@ -243,12 +246,12 @@ class MDElement
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  else
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  return nil
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  end
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- if @al and not @al.empty? then
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+ if @al and not @al.empty? then
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  s = s.chop + ", #{@al.inspect})"
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  end
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  s
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  end
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-
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+
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  end
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  end