omf_web 0.9.9 → 1.0.0

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Files changed (64) hide show
  1. checksums.yaml +7 -0
  2. data/README.md +31 -0
  3. data/bin/omf_web_server.rb +157 -0
  4. data/doc/screenshot2.png +0 -0
  5. data/doc/widget_detail.png +0 -0
  6. data/example/demo/data_sources/downloads.rb +2 -1
  7. data/example/simple/README.md +12 -13
  8. data/example/simple/create_waveform.rb +29 -0
  9. data/example/simple/introduction.md +17 -0
  10. data/example/simple/sample.sq3 +0 -0
  11. data/example/simple/sample.sql +1008 -0
  12. data/example/simple/simple.yaml +62 -0
  13. data/example/simple/simple_dynamic.yaml +66 -0
  14. data/lib/irods4r/file.rb +15 -14
  15. data/lib/irods4r/icommands.rb +18 -18
  16. data/lib/irods4r.rb +9 -9
  17. data/lib/omf-web/config.ru +41 -16
  18. data/lib/omf-web/content/git_repository.rb +32 -31
  19. data/lib/omf-web/content/irods_repository.rb +34 -33
  20. data/lib/omf-web/content/repository.rb +48 -44
  21. data/lib/omf-web/data_source_proxy.rb +33 -22
  22. data/lib/omf-web/rack/session_authenticator.rb +48 -12
  23. data/lib/omf-web/rack/tab_mapper.rb +30 -36
  24. data/lib/omf-web/rack/websocket_handler.rb +26 -25
  25. data/lib/omf-web/session_store.rb +16 -13
  26. data/lib/omf-web/theme/abstract_page.rb +26 -22
  27. data/lib/omf-web/theme/bright/page.rb +84 -34
  28. data/lib/omf-web/theme/bright/stacked_renderer.rb +20 -19
  29. data/lib/omf-web/theme.rb +14 -9
  30. data/lib/omf-web/thin/runner.rb +38 -36
  31. data/lib/omf-web/thin/server.rb +255 -0
  32. data/lib/omf-web/version.rb +1 -1
  33. data/lib/omf-web/widget/data_widget.rb +6 -6
  34. data/lib/omf-web/widget/text/maruku/helpers.rb +33 -30
  35. data/lib/omf-web/widget/text/maruku/input/parse_block.rb +117 -117
  36. data/lib/omf-web/widget/text/maruku/output/to_html.rb +155 -154
  37. data/lib/omf-web/widget/text/maruku.rb +17 -16
  38. data/omf_web.gemspec +6 -2
  39. data/sample.sq3 +0 -0
  40. data/share/htdocs/graph/js/gauge.js +524 -0
  41. data/share/htdocs/vendor/VERSION_MAP.yaml +3 -3
  42. data/share/htdocs/vendor/backbone-1.0.0/backbone.js +1571 -0
  43. data/share/htdocs/vendor/d3-3.0/LICENSE.brewer.txt +38 -0
  44. data/share/htdocs/vendor/d3-3.0/colorbrewer.js +1 -0
  45. data/share/htdocs/vendor/d3-3.0/d3.js +8810 -0
  46. data/share/htdocs/vendor/d3-3.0/d3.min.js +5 -0
  47. data/share/htdocs/vendor/geo_json/Readme.txt +71 -0
  48. data/share/htdocs/vendor/geo_json/regions.json +41 -0
  49. data/share/htdocs/vendor/geo_json/switzerland.json +24 -0
  50. data/share/htdocs/vendor/geo_json/world.json +497 -0
  51. data/share/htdocs/vendor/nv_d3/js/nv.d3.js +8801 -4447
  52. data/share/htdocs/vendor/spin/jquery.spin.js +46 -0
  53. data/share/htdocs/vendor/spin/spin.js +349 -0
  54. data/share/htdocs/vendor/spin/spin.min.js +1 -0
  55. data/share/htdocs/vendor/underscore-1.4.4/underscore.js +1227 -0
  56. metadata +63 -48
  57. data/example/simple/data_sources/gimi31.sq3 +0 -0
  58. data/example/simple/data_sources/ping_source.rb +0 -56
  59. data/example/simple/simple_viz_server.rb +0 -39
  60. data/example/simple/widgets/charts_tab.yaml +0 -38
  61. data/share/.DS_Store +0 -0
  62. data/share/htdocs/.DS_Store +0 -0
  63. data/share/htdocs/vendor/backbone-0.5.3/backbone.js +0 -1158
  64. data/share/htdocs/vendor/underscore-1.2.1/underscore.js +0 -958
@@ -0,0 +1,1008 @@
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+
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+ BEGIN TRANSACTION;
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+ CREATE TABLE _senders (name TEXT PRIMARY KEY, id INTEGER UNIQUE);
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+ INSERT INTO "_senders" VALUES('ch1',1);
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+ CREATE TABLE _experiment_metadata (key TEXT PRIMARY KEY, value TEXT);
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+ INSERT INTO "_experiment_metadata" VALUES('start_time','1375443170');
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+ CREATE TABLE "wave" (oml_sender_id INTEGER, oml_seq INTEGER, oml_ts_client REAL, oml_ts_server REAL, "t" REAL, "y" REAL);
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+ INSERT INTO "wave" VALUES(1,0,0.0,0.0,0.0,0.0);
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+ INSERT INTO "wave" VALUES(1,1,0.001,0.001,0.001,0.15055289207054623);
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+ INSERT INTO "wave" VALUES(1,2,0.002,0.002,0.002,0.2996475504627104);
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+ INSERT INTO "wave" VALUES(1,3,0.003,0.003,0.003,0.44584119466285443);
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+ INSERT INTO "wave" VALUES(1,4,0.004,0.004,0.004,0.5877217759631443);
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+ INSERT INTO "wave" VALUES(1,5,0.005,0.005,0.005,0.7239229091144456);
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+ INSERT INTO "wave" VALUES(1,6,0.006,0.006,0.006,0.8531382886199645);
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+ INSERT INTO "wave" VALUES(1,7,0.007,0.007,0.007,0.9741354273763999);
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+ INSERT INTO "wave" VALUES(1,8,0.008,0.008,0.008,1.0857685633578698);
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+ INSERT INTO "wave" VALUES(1,9,0.009000000000000001,0.009000000000000001,0.009000000000000001,1.1869905898400428);
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+ INSERT INTO "wave" VALUES(1,10,0.01,0.01,0.01,1.2768638761587376);
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+ INSERT INTO "wave" VALUES(1,11,0.011,0.011,0.011,1.3545698590493265);
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+ INSERT INTO "wave" VALUES(1,12,0.012,0.012,0.012,1.4194172990622744);
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+ INSERT INTO "wave" VALUES(1,13,0.013000000000000001,0.013000000000000001,0.013000000000000001,1.470849112221059);
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+ INSERT INTO "wave" VALUES(1,14,0.014,0.014,0.014,1.508447703791739);
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+ INSERT INTO "wave" VALUES(1,15,0.015,0.015,0.015,1.531938748566581);
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+ INSERT INTO "wave" VALUES(1,16,0.016,0.016,0.016,1.541193380215502);
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+ INSERT INTO "wave" VALUES(1,17,0.017,0.017,0.017,1.5362287708095883);
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+ INSERT INTO "wave" VALUES(1,18,0.018000000000000002,0.018000000000000002,0.018000000000000002,1.5172071003470151);
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+ INSERT INTO "wave" VALUES(1,19,0.019,0.019,0.019,1.4844329347879754);
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+ INSERT INTO "wave" VALUES(1,20,0.02,0.02,0.02,1.4383490495074551);
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+ INSERT INTO "wave" VALUES(1,21,0.021,0.021,0.021,1.3795307529822778);
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+ INSERT INTO "wave" VALUES(1,22,0.022,0.022,0.022,1.3086787827277908);
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+ INSERT INTO "wave" VALUES(1,23,0.023,0.023,0.023,1.2266108617848965);
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+ INSERT INTO "wave" VALUES(1,24,0.024,0.024,0.024,1.1342520192365468);
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+ INSERT INTO "wave" VALUES(1,25,0.025,0.025,0.025,1.0326237921249266);
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+ INSERT INTO "wave" VALUES(1,26,0.026000000000000002,0.026000000000000002,0.026000000000000002,0.9228324385831816);
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+ INSERT INTO "wave" VALUES(1,27,0.027,0.027,0.027,0.8060563028435855);
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+ INSERT INTO "wave" VALUES(1,28,0.028,0.028,0.028,0.6835324819122958);
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+ INSERT INTO "wave" VALUES(1,29,0.029,0.029,0.029,0.5565429510054936);
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+ INSERT INTO "wave" VALUES(1,30,0.03,0.03,0.03,0.4264003102414904);
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+ INSERT INTO "wave" VALUES(1,31,0.031,0.031,0.031,0.2944333185206301);
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+ INSERT INTO "wave" VALUES(1,32,0.032,0.032,0.032,0.161972381966079);
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+ INSERT INTO "wave" VALUES(1,33,0.033,0.033,0.033,0.030335163734839632);
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+ INSERT INTO "wave" VALUES(1,34,0.034,0.034,0.034,-0.0991875205446579);
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+ INSERT INTO "wave" VALUES(1,35,0.035,0.035,0.035,-0.22534536195440688);
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+ INSERT INTO "wave" VALUES(1,36,0.036000000000000004,0.036000000000000004,0.036000000000000004,-0.3469416187220383);
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+ INSERT INTO "wave" VALUES(1,37,0.037,0.037,0.037,-0.4628454327302036);
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+ INSERT INTO "wave" VALUES(1,38,0.038,0.038,0.038,-0.5720032667983382);
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+ INSERT INTO "wave" VALUES(1,39,0.039,0.039,0.039,-0.6734493388742284);
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+ INSERT INTO "wave" VALUES(1,40,0.04,0.04,0.04,-0.7663149421264609);
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+ INSERT INTO "wave" VALUES(1,41,0.041,0.041,0.041,-0.8498365540325947);
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+ INSERT INTO "wave" VALUES(1,42,0.042,0.042,0.042,-0.9233626527330471);
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+ INSERT INTO "wave" VALUES(1,43,0.043000000000000003,0.043000000000000003,0.043000000000000003,-0.986359174975749);
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+ INSERT INTO "wave" VALUES(1,44,0.044,0.044,0.044,-1.03841356671043);
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+ INSERT INTO "wave" VALUES(1,45,0.045,0.045,0.045,-1.0792373945950904);
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+ INSERT INTO "wave" VALUES(1,46,0.046,0.046,0.046,-1.108667504137296);
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+ INSERT INTO "wave" VALUES(1,47,0.047,0.047,0.047,-1.1266657276936254);
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+ INSERT INTO "wave" VALUES(1,48,0.048,0.048,0.048,-1.1333171628767644);
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+ INSERT INTO "wave" VALUES(1,49,0.049,0.049,0.049,-1.1288270588594485);
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+ INSERT INTO "wave" VALUES(1,50,0.05,0.05,0.05,-1.1135163644116068);
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+ INSERT INTO "wave" VALUES(1,51,0.051000000000000004,0.051000000000000004,0.051000000000000004,-1.0878160070640994);
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+ INSERT INTO "wave" VALUES(1,52,0.052000000000000005,0.052000000000000005,0.052000000000000005,-1.0522599873725034);
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+ INSERT INTO "wave" VALUES(1,53,0.053,0.053,0.053,-1.0074773856839445);
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+ INSERT INTO "wave" VALUES(1,54,0.054,0.054,0.054,-0.954183390930608);
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+ INSERT INTO "wave" VALUES(1,55,0.055,0.055,0.055,-0.8931694716441597);
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+ INSERT INTO "wave" VALUES(1,56,0.056,0.056,0.056,-0.8252928184836285);
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+ INSERT INTO "wave" VALUES(1,57,0.057,0.057,0.057,-0.7514651949933987);
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+ INSERT INTO "wave" VALUES(1,58,0.058,0.058,0.058,-0.6726413389775141);
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+ INSERT INTO "wave" VALUES(1,59,0.059000000000000004,0.059000000000000004,0.059000000000000004,-0.589807060733554);
68
+ INSERT INTO "wave" VALUES(1,60,0.06,0.06,0.06,-0.5039671863990781);
69
+ INSERT INTO "wave" VALUES(1,61,0.061,0.061,0.061,-0.41613349481464584);
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+ INSERT INTO "wave" VALUES(1,62,0.062,0.062,0.062,-0.3273127946117262);
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+ INSERT INTO "wave" VALUES(1,63,0.063,0.063,0.063,-0.2384952847265927);
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+ INSERT INTO "wave" VALUES(1,64,0.064,0.064,0.064,-0.15064333628053223);
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+ INSERT INTO "wave" VALUES(1,65,0.065,0.065,0.065,-0.06468082683186849);
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+ INSERT INTO "wave" VALUES(1,66,0.066,0.066,0.066,0.018516850503081606);
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+ INSERT INTO "wave" VALUES(1,67,0.067,0.067,0.067,0.09813199052543797);
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+ INSERT INTO "wave" VALUES(1,68,0.068,0.068,0.068,0.17341289076988875);
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+ INSERT INTO "wave" VALUES(1,69,0.069,0.069,0.069,0.2436811888483169);
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+ INSERT INTO "wave" VALUES(1,70,0.07,0.07,0.07,0.3083381469464892);
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+ INSERT INTO "wave" VALUES(1,71,0.07100000000000001,0.07100000000000001,0.07100000000000001,0.36686982235584953);
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+ INSERT INTO "wave" VALUES(1,72,0.07200000000000001,0.07200000000000001,0.07200000000000001,0.4188510778085033);
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+ INSERT INTO "wave" VALUES(1,73,0.073,0.073,0.073,0.4639484007043365);
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+ INSERT INTO "wave" VALUES(1,74,0.074,0.074,0.074,0.5019215158755653);
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+ INSERT INTO "wave" VALUES(1,75,0.075,0.075,0.075,0.5326237921249264);
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+ INSERT INTO "wave" VALUES(1,76,0.076,0.076,0.076,0.5560014581990118);
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+ INSERT INTO "wave" VALUES(1,77,0.077,0.077,0.077,0.572091658921144);
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+ INSERT INTO "wave" VALUES(1,78,0.078,0.078,0.078,0.5810193967177311);
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+ INSERT INTO "wave" VALUES(1,79,0.079,0.079,0.079,0.582993417545741);
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+ INSERT INTO "wave" VALUES(1,80,0.08,0.08,0.08,0.578301113094727);
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+ INSERT INTO "wave" VALUES(1,81,0.081,0.081,0.081,0.5673025229356334);
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+ INSERT INTO "wave" VALUES(1,82,0.082,0.082,0.082,0.5504235308759513);
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+ INSERT INTO "wave" VALUES(1,83,0.083,0.083,0.083,0.5281483590289416);
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+ INSERT INTO "wave" VALUES(1,84,0.084,0.084,0.084,0.5010114709038482);
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+ INSERT INTO "wave" VALUES(1,85,0.085,0.085,0.085,0.4695890010841767);
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+ INSERT INTO "wave" VALUES(1,86,0.08600000000000001,0.08600000000000001,0.08600000000000001,0.43448983371252176);
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+ INSERT INTO "wave" VALUES(1,87,0.08700000000000001,0.08700000000000001,0.08700000000000001,0.3963464549949175);
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+ INSERT INTO "wave" VALUES(1,88,0.088,0.088,0.088,0.3558057062488131);
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+ INSERT INTO "wave" VALUES(1,89,0.089,0.089,0.089,0.31351956364239114);
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+ INSERT INTO "wave" VALUES(1,90,0.09,0.09,0.09,0.27013606872690993);
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+ INSERT INTO "wave" VALUES(1,91,0.091,0.091,0.091,0.2262905301876636);
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+ INSERT INTO "wave" VALUES(1,92,0.092,0.092,0.092,0.1825971119939091);
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+ INSERT INTO "wave" VALUES(1,93,0.093,0.093,0.093,0.1396409163946547);
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+ INSERT INTO "wave" VALUES(1,94,0.094,0.094,0.094,0.09797066208583138);
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+ INSERT INTO "wave" VALUES(1,95,0.095,0.095,0.095,0.05809204848292271);
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+ INSERT INTO "wave" VALUES(1,96,0.096,0.096,0.096,0.020461886505688587);
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+ INSERT INTO "wave" VALUES(1,100,0.1,0.1,0.1,-0.1004057079431136);
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+ INSERT INTO "wave" VALUES(1,102,0.10200000000000001,0.10200000000000001,0.10200000000000001,-0.139756733682585);
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+ INSERT INTO "wave" VALUES(1,104,0.10400000000000001,0.10400000000000001,0.10400000000000001,-0.16408588908591365);
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968
+ INSERT INTO "wave" VALUES(1,960,0.96,0.96,0.96,0.766314942126471);
969
+ INSERT INTO "wave" VALUES(1,961,0.961,0.961,0.961,0.6734493388742389);
970
+ INSERT INTO "wave" VALUES(1,962,0.962,0.962,0.962,0.5720032667983472);
971
+ INSERT INTO "wave" VALUES(1,963,0.963,0.963,0.963,0.4628454327302127);
972
+ INSERT INTO "wave" VALUES(1,964,0.964,0.964,0.964,0.3469416187220452);
973
+ INSERT INTO "wave" VALUES(1,965,0.965,0.965,0.965,0.22534536195441335);
974
+ INSERT INTO "wave" VALUES(1,966,0.966,0.966,0.966,0.09918752054466312);
975
+ INSERT INTO "wave" VALUES(1,967,0.967,0.967,0.967,-0.030335163734835913);
976
+ INSERT INTO "wave" VALUES(1,968,0.968,0.968,0.968,-0.16197238196607583);
977
+ INSERT INTO "wave" VALUES(1,969,0.969,0.969,0.969,-0.2944333185206178);
978
+ INSERT INTO "wave" VALUES(1,970,0.97,0.97,0.97,-0.4264003102414792);
979
+ INSERT INTO "wave" VALUES(1,971,0.971,0.971,0.971,-0.5565429510054846);
980
+ INSERT INTO "wave" VALUES(1,972,0.972,0.972,0.972,-0.6835324819122877);
981
+ INSERT INTO "wave" VALUES(1,973,0.973,0.973,0.973,-0.806056302843579);
982
+ INSERT INTO "wave" VALUES(1,974,0.974,0.974,0.974,-0.9228324385831762);
983
+ INSERT INTO "wave" VALUES(1,975,0.975,0.975,0.975,-1.0326237921249224);
984
+ INSERT INTO "wave" VALUES(1,976,0.976,0.976,0.976,-1.1342520192365435);
985
+ INSERT INTO "wave" VALUES(1,977,0.977,0.977,0.977,-1.226610861784894);
986
+ INSERT INTO "wave" VALUES(1,978,0.978,0.978,0.978,-1.3086787827277848);
987
+ INSERT INTO "wave" VALUES(1,979,0.979,0.979,0.979,-1.3795307529822738);
988
+ INSERT INTO "wave" VALUES(1,980,0.98,0.98,0.98,-1.438349049507452);
989
+ INSERT INTO "wave" VALUES(1,981,0.981,0.981,0.981,-1.4844329347879737);
990
+ INSERT INTO "wave" VALUES(1,982,0.982,0.982,0.982,-1.5172071003470138);
991
+ INSERT INTO "wave" VALUES(1,983,0.983,0.983,0.983,-1.5362287708095872);
992
+ INSERT INTO "wave" VALUES(1,984,0.984,0.984,0.984,-1.5411933802155016);
993
+ INSERT INTO "wave" VALUES(1,985,0.985,0.985,0.985,-1.5319387485665807);
994
+ INSERT INTO "wave" VALUES(1,986,0.986,0.986,0.986,-1.508447703791739);
995
+ INSERT INTO "wave" VALUES(1,987,0.987,0.987,0.987,-1.470849112221063);
996
+ INSERT INTO "wave" VALUES(1,988,0.988,0.988,0.988,-1.4194172990622793);
997
+ INSERT INTO "wave" VALUES(1,989,0.989,0.989,0.989,-1.354569859049331);
998
+ INSERT INTO "wave" VALUES(1,990,0.99,0.99,0.99,-1.276863876158743);
999
+ INSERT INTO "wave" VALUES(1,991,0.991,0.991,0.991,-1.1869905898400468);
1000
+ INSERT INTO "wave" VALUES(1,992,0.992,0.992,0.992,-1.0857685633578729);
1001
+ INSERT INTO "wave" VALUES(1,993,0.993,0.993,0.993,-0.9741354273764028);
1002
+ INSERT INTO "wave" VALUES(1,994,0.994,0.994,0.994,-0.8531382886199662);
1003
+ INSERT INTO "wave" VALUES(1,995,0.995,0.995,0.995,-0.723922909114447);
1004
+ INSERT INTO "wave" VALUES(1,996,0.996,0.996,0.996,-0.5877217759631546);
1005
+ INSERT INTO "wave" VALUES(1,997,0.997,0.997,0.997,-0.4458411946628644);
1006
+ INSERT INTO "wave" VALUES(1,998,0.998,0.998,0.998,-0.2996475504627187);
1007
+ INSERT INTO "wave" VALUES(1,999,0.999,0.999,0.999,-0.15055289207055406);
1008
+ END TRANSACTION;