omf_web 0.9.9 → 1.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (64) hide show
  1. checksums.yaml +7 -0
  2. data/README.md +31 -0
  3. data/bin/omf_web_server.rb +157 -0
  4. data/doc/screenshot2.png +0 -0
  5. data/doc/widget_detail.png +0 -0
  6. data/example/demo/data_sources/downloads.rb +2 -1
  7. data/example/simple/README.md +12 -13
  8. data/example/simple/create_waveform.rb +29 -0
  9. data/example/simple/introduction.md +17 -0
  10. data/example/simple/sample.sq3 +0 -0
  11. data/example/simple/sample.sql +1008 -0
  12. data/example/simple/simple.yaml +62 -0
  13. data/example/simple/simple_dynamic.yaml +66 -0
  14. data/lib/irods4r/file.rb +15 -14
  15. data/lib/irods4r/icommands.rb +18 -18
  16. data/lib/irods4r.rb +9 -9
  17. data/lib/omf-web/config.ru +41 -16
  18. data/lib/omf-web/content/git_repository.rb +32 -31
  19. data/lib/omf-web/content/irods_repository.rb +34 -33
  20. data/lib/omf-web/content/repository.rb +48 -44
  21. data/lib/omf-web/data_source_proxy.rb +33 -22
  22. data/lib/omf-web/rack/session_authenticator.rb +48 -12
  23. data/lib/omf-web/rack/tab_mapper.rb +30 -36
  24. data/lib/omf-web/rack/websocket_handler.rb +26 -25
  25. data/lib/omf-web/session_store.rb +16 -13
  26. data/lib/omf-web/theme/abstract_page.rb +26 -22
  27. data/lib/omf-web/theme/bright/page.rb +84 -34
  28. data/lib/omf-web/theme/bright/stacked_renderer.rb +20 -19
  29. data/lib/omf-web/theme.rb +14 -9
  30. data/lib/omf-web/thin/runner.rb +38 -36
  31. data/lib/omf-web/thin/server.rb +255 -0
  32. data/lib/omf-web/version.rb +1 -1
  33. data/lib/omf-web/widget/data_widget.rb +6 -6
  34. data/lib/omf-web/widget/text/maruku/helpers.rb +33 -30
  35. data/lib/omf-web/widget/text/maruku/input/parse_block.rb +117 -117
  36. data/lib/omf-web/widget/text/maruku/output/to_html.rb +155 -154
  37. data/lib/omf-web/widget/text/maruku.rb +17 -16
  38. data/omf_web.gemspec +6 -2
  39. data/sample.sq3 +0 -0
  40. data/share/htdocs/graph/js/gauge.js +524 -0
  41. data/share/htdocs/vendor/VERSION_MAP.yaml +3 -3
  42. data/share/htdocs/vendor/backbone-1.0.0/backbone.js +1571 -0
  43. data/share/htdocs/vendor/d3-3.0/LICENSE.brewer.txt +38 -0
  44. data/share/htdocs/vendor/d3-3.0/colorbrewer.js +1 -0
  45. data/share/htdocs/vendor/d3-3.0/d3.js +8810 -0
  46. data/share/htdocs/vendor/d3-3.0/d3.min.js +5 -0
  47. data/share/htdocs/vendor/geo_json/Readme.txt +71 -0
  48. data/share/htdocs/vendor/geo_json/regions.json +41 -0
  49. data/share/htdocs/vendor/geo_json/switzerland.json +24 -0
  50. data/share/htdocs/vendor/geo_json/world.json +497 -0
  51. data/share/htdocs/vendor/nv_d3/js/nv.d3.js +8801 -4447
  52. data/share/htdocs/vendor/spin/jquery.spin.js +46 -0
  53. data/share/htdocs/vendor/spin/spin.js +349 -0
  54. data/share/htdocs/vendor/spin/spin.min.js +1 -0
  55. data/share/htdocs/vendor/underscore-1.4.4/underscore.js +1227 -0
  56. metadata +63 -48
  57. data/example/simple/data_sources/gimi31.sq3 +0 -0
  58. data/example/simple/data_sources/ping_source.rb +0 -56
  59. data/example/simple/simple_viz_server.rb +0 -39
  60. data/example/simple/widgets/charts_tab.yaml +0 -38
  61. data/share/.DS_Store +0 -0
  62. data/share/htdocs/.DS_Store +0 -0
  63. data/share/htdocs/vendor/backbone-0.5.3/backbone.js +0 -1158
  64. data/share/htdocs/vendor/underscore-1.2.1/underscore.js +0 -958
@@ -0,0 +1,46 @@
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+
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+ // Copied from http://fgnass.github.io/spin.js
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+
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+ // var opts = {
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+ // lines: 13, // The number of lines to draw
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+ // length: 20, // The length of each line
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+ // width: 10, // The line thickness
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+ // radius: 30, // The radius of the inner circle
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+ // corners: 1, // Corner roundness (0..1)
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+ // rotate: 0, // The rotation offset
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+ // direction: 1, // 1: clockwise, -1: counterclockwise
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+ // color: '#000', // #rgb or #rrggbb
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+ // speed: 1, // Rounds per second
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+ // trail: 60, // Afterglow percentage
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+ // shadow: false, // Whether to render a shadow
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+ // hwaccel: false, // Whether to use hardware acceleration
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+ // className: 'spinner', // The CSS class to assign to the spinner
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+ // zIndex: 2e9, // The z-index (defaults to 2000000000)
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+ // top: 'auto', // Top position relative to parent in px
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+ // left: 'auto' // Left position relative to parent in px
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+ // };
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+
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+ function _jquery_spin_() {
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+ $.fn.spin = function(opts) {
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+ this.each(function() {
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+ var $this = $(this),
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+ data = $this.data();
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+
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+ if (data.spinner) {
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+ data.spinner.stop();
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+ delete data.spinner;
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+ }
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+ if (opts !== false) {
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+ data.spinner = new Spinner($.extend({left: '0px', color: $this.css('color')}, opts)).spin(this);
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+ }
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+ });
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+ return this;
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+ };
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+ }
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+
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+ if (L != undefined) {
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+ L.provide('jquery.spin', ['/resource/vendor/spin/spin.min.js'], _jquery_spin_);
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+ } else {
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+ // This assumes that /resource/vendor/spin/spin.min.js has already been loaded
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+ _jquery_spin_();
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+ }
@@ -0,0 +1,349 @@
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+ //fgnass.github.com/spin.js#v1.3
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+
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+ /**
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+ * Copyright (c) 2011-2013 Felix Gnass
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+ * Licensed under the MIT license
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+ */
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+ (function(root, factory) {
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+
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+ /* CommonJS */
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+ if (typeof exports == 'object') module.exports = factory()
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+
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+ /* AMD module */
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+ else if (typeof define == 'function' && define.amd) define(factory)
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+
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+ /* Browser global */
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+ else root.Spinner = factory()
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+ }
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+ (this, function() {
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+ "use strict";
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+
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+ var prefixes = ['webkit', 'Moz', 'ms', 'O'] /* Vendor prefixes */
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+ , animations = {} /* Animation rules keyed by their name */
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+ , useCssAnimations /* Whether to use CSS animations or setTimeout */
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+
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+ /**
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+ * Utility function to create elements. If no tag name is given,
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+ * a DIV is created. Optionally properties can be passed.
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+ */
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+ function createEl(tag, prop) {
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+ var el = document.createElement(tag || 'div')
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+ , n
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+
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+ for(n in prop) el[n] = prop[n]
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+ return el
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+ }
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+
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+ /**
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+ * Appends children and returns the parent.
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+ */
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+ function ins(parent /* child1, child2, ...*/) {
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+ for (var i=1, n=arguments.length; i<n; i++)
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+ parent.appendChild(arguments[i])
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+
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+ return parent
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+ }
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+
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+ /**
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+ * Insert a new stylesheet to hold the @keyframe or VML rules.
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+ */
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+ var sheet = (function() {
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+ var el = createEl('style', {type : 'text/css'})
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+ ins(document.getElementsByTagName('head')[0], el)
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+ return el.sheet || el.styleSheet
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+ }())
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+
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+ /**
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+ * Creates an opacity keyframe animation rule and returns its name.
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+ * Since most mobile Webkits have timing issues with animation-delay,
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+ * we create separate rules for each line/segment.
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+ */
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+ function addAnimation(alpha, trail, i, lines) {
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+ var name = ['opacity', trail, ~~(alpha*100), i, lines].join('-')
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+ , start = 0.01 + i/lines * 100
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+ , z = Math.max(1 - (1-alpha) / trail * (100-start), alpha)
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+ , prefix = useCssAnimations.substring(0, useCssAnimations.indexOf('Animation')).toLowerCase()
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+ , pre = prefix && '-' + prefix + '-' || ''
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+
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+ if (!animations[name]) {
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+ sheet.insertRule(
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+ '@' + pre + 'keyframes ' + name + '{' +
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+ '0%{opacity:' + z + '}' +
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+ start + '%{opacity:' + alpha + '}' +
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+ (start+0.01) + '%{opacity:1}' +
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+ (start+trail) % 100 + '%{opacity:' + alpha + '}' +
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+ '100%{opacity:' + z + '}' +
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+ '}', sheet.cssRules.length)
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+
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+ animations[name] = 1
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+ }
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+
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+ return name
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+ }
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+
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+ /**
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+ * Tries various vendor prefixes and returns the first supported property.
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+ */
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+ function vendor(el, prop) {
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+ var s = el.style
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+ , pp
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+ , i
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+
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+ if(s[prop] !== undefined) return prop
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+ prop = prop.charAt(0).toUpperCase() + prop.slice(1)
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+ for(i=0; i<prefixes.length; i++) {
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+ pp = prefixes[i]+prop
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+ if(s[pp] !== undefined) return pp
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+ }
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+ }
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+
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+ /**
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+ * Sets multiple style properties at once.
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+ */
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+ function css(el, prop) {
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+ for (var n in prop)
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+ el.style[vendor(el, n)||n] = prop[n]
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+
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+ return el
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+ }
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+
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+ /**
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+ * Fills in default values.
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+ */
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+ function merge(obj) {
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+ for (var i=1; i < arguments.length; i++) {
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+ var def = arguments[i]
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+ for (var n in def)
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+ if (obj[n] === undefined) obj[n] = def[n]
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+ }
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+ return obj
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+ }
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+
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+ /**
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+ * Returns the absolute page-offset of the given element.
124
+ */
125
+ function pos(el) {
126
+ var o = { x:el.offsetLeft, y:el.offsetTop }
127
+ while((el = el.offsetParent))
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+ o.x+=el.offsetLeft, o.y+=el.offsetTop
129
+
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+ return o
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+ }
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+
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+ // Built-in defaults
134
+
135
+ var defaults = {
136
+ lines: 12, // The number of lines to draw
137
+ length: 7, // The length of each line
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+ width: 5, // The line thickness
139
+ radius: 10, // The radius of the inner circle
140
+ rotate: 0, // Rotation offset
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+ corners: 1, // Roundness (0..1)
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+ color: '#000', // #rgb or #rrggbb
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+ direction: 1, // 1: clockwise, -1: counterclockwise
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+ speed: 1, // Rounds per second
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+ trail: 100, // Afterglow percentage
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+ opacity: 1/4, // Opacity of the lines
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+ fps: 20, // Frames per second when using setTimeout()
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+ zIndex: 2e9, // Use a high z-index by default
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+ className: 'spinner', // CSS class to assign to the element
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+ top: 'auto', // center vertically
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+ left: 'auto', // center horizontally
152
+ position: 'relative' // element position
153
+ }
154
+
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+ /** The constructor */
156
+ function Spinner(o) {
157
+ if (typeof this == 'undefined') return new Spinner(o)
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+ this.opts = merge(o || {}, Spinner.defaults, defaults)
159
+ }
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+
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+ // Global defaults that override the built-ins:
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+ Spinner.defaults = {}
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+
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+ merge(Spinner.prototype, {
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+
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+ /**
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+ * Adds the spinner to the given target element. If this instance is already
168
+ * spinning, it is automatically removed from its previous target b calling
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+ * stop() internally.
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+ */
171
+ spin: function(target) {
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+ this.stop()
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+
174
+ var self = this
175
+ , o = self.opts
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+ , el = self.el = css(createEl(0, {className: o.className}), {position: o.position, width: 0, zIndex: o.zIndex})
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+ , mid = o.radius+o.length+o.width
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+ , ep // element position
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+ , tp // target position
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+
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+ if (target) {
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+ target.insertBefore(el, target.firstChild||null)
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+ tp = pos(target)
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+ ep = pos(el)
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+ css(el, {
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+ left: (o.left == 'auto' ? tp.x-ep.x + (target.offsetWidth >> 1) : parseInt(o.left, 10) + mid) + 'px',
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+ top: (o.top == 'auto' ? tp.y-ep.y + (target.offsetHeight >> 1) : parseInt(o.top, 10) + mid) + 'px'
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+ })
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+ }
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+
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+ el.setAttribute('role', 'progressbar')
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+ self.lines(el, self.opts)
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+
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+ if (!useCssAnimations) {
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+ // No CSS animation support, use setTimeout() instead
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+ var i = 0
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+ , start = (o.lines - 1) * (1 - o.direction) / 2
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+ , alpha
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+ , fps = o.fps
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+ , f = fps/o.speed
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+ , ostep = (1-o.opacity) / (f*o.trail / 100)
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+ , astep = f/o.lines
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+
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+ ;(function anim() {
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+ i++;
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+ for (var j = 0; j < o.lines; j++) {
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+ alpha = Math.max(1 - (i + (o.lines - j) * astep) % f * ostep, o.opacity)
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+
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+ self.opacity(el, j * o.direction + start, alpha, o)
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+ }
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+ self.timeout = self.el && setTimeout(anim, ~~(1000/fps))
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+ })()
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+ }
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+ return self
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+ },
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+
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+ /**
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+ * Stops and removes the Spinner.
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+ */
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+ stop: function() {
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+ var el = this.el
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+ if (el) {
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+ clearTimeout(this.timeout)
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+ if (el.parentNode) el.parentNode.removeChild(el)
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+ this.el = undefined
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+ }
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+ return this
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+ },
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+
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+ /**
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+ * Internal method that draws the individual lines. Will be overwritten
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+ * in VML fallback mode below.
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+ */
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+ lines: function(el, o) {
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+ var i = 0
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+ , start = (o.lines - 1) * (1 - o.direction) / 2
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+ , seg
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+
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+ function fill(color, shadow) {
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+ return css(createEl(), {
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+ position: 'absolute',
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+ width: (o.length+o.width) + 'px',
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+ height: o.width + 'px',
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+ background: color,
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+ boxShadow: shadow,
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+ transformOrigin: 'left',
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+ transform: 'rotate(' + ~~(360/o.lines*i+o.rotate) + 'deg) translate(' + o.radius+'px' +',0)',
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+ borderRadius: (o.corners * o.width>>1) + 'px'
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+ })
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+ }
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+
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+ for (; i < o.lines; i++) {
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+ seg = css(createEl(), {
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+ position: 'absolute',
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+ top: 1+~(o.width/2) + 'px',
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+ transform: o.hwaccel ? 'translate3d(0,0,0)' : '',
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+ opacity: o.opacity,
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+ animation: useCssAnimations && addAnimation(o.opacity, o.trail, start + i * o.direction, o.lines) + ' ' + 1/o.speed + 's linear infinite'
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+ })
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+
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+ if (o.shadow) ins(seg, css(fill('#000', '0 0 4px ' + '#000'), {top: 2+'px'}))
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+
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+ ins(el, ins(seg, fill(o.color, '0 0 1px rgba(0,0,0,.1)')))
264
+ }
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+ return el
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+ },
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+
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+ /**
269
+ * Internal method that adjusts the opacity of a single line.
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+ * Will be overwritten in VML fallback mode below.
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+ */
272
+ opacity: function(el, i, val) {
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+ if (i < el.childNodes.length) el.childNodes[i].style.opacity = val
274
+ }
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+
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+ })
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+
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+
279
+ function initVML() {
280
+
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+ /* Utility function to create a VML tag */
282
+ function vml(tag, attr) {
283
+ return createEl('<' + tag + ' xmlns="urn:schemas-microsoft.com:vml" class="spin-vml">', attr)
284
+ }
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+
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+ // No CSS transforms but VML support, add a CSS rule for VML elements:
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+ sheet.addRule('.spin-vml', 'behavior:url(#default#VML)')
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+
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+ Spinner.prototype.lines = function(el, o) {
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+ var r = o.length+o.width
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+ , s = 2*r
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+
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+ function grp() {
294
+ return css(
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+ vml('group', {
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+ coordsize: s + ' ' + s,
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+ coordorigin: -r + ' ' + -r
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+ }),
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+ { width: s, height: s }
300
+ )
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+ }
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+
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+ var margin = -(o.width+o.length)*2 + 'px'
304
+ , g = css(grp(), {position: 'absolute', top: margin, left: margin})
305
+ , i
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+
307
+ function seg(i, dx, filter) {
308
+ ins(g,
309
+ ins(css(grp(), {rotation: 360 / o.lines * i + 'deg', left: ~~dx}),
310
+ ins(css(vml('roundrect', {arcsize: o.corners}), {
311
+ width: r,
312
+ height: o.width,
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+ left: o.radius,
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+ top: -o.width>>1,
315
+ filter: filter
316
+ }),
317
+ vml('fill', {color: o.color, opacity: o.opacity}),
318
+ vml('stroke', {opacity: 0}) // transparent stroke to fix color bleeding upon opacity change
319
+ )
320
+ )
321
+ )
322
+ }
323
+
324
+ if (o.shadow)
325
+ for (i = 1; i <= o.lines; i++)
326
+ seg(i, -2, 'progid:DXImageTransform.Microsoft.Blur(pixelradius=2,makeshadow=1,shadowopacity=.3)')
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+
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+ for (i = 1; i <= o.lines; i++) seg(i)
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+ return ins(el, g)
330
+ }
331
+
332
+ Spinner.prototype.opacity = function(el, i, val, o) {
333
+ var c = el.firstChild
334
+ o = o.shadow && o.lines || 0
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+ if (c && i+o < c.childNodes.length) {
336
+ c = c.childNodes[i+o]; c = c && c.firstChild; c = c && c.firstChild
337
+ if (c) c.opacity = val
338
+ }
339
+ }
340
+ }
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+
342
+ var probe = css(createEl('group'), {behavior: 'url(#default#VML)'})
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+
344
+ if (!vendor(probe, 'transform') && probe.adj) initVML()
345
+ else useCssAnimations = vendor(probe, 'animation')
346
+
347
+ return Spinner
348
+
349
+ }));
@@ -0,0 +1 @@
1
+ (function(t,e){if(typeof exports=="object")module.exports=e();else if(typeof define=="function"&&define.amd)define(e);else t.Spinner=e()})(this,function(){"use strict";var t=["webkit","Moz","ms","O"],e={},i;function o(t,e){var i=document.createElement(t||"div"),o;for(o in e)i[o]=e[o];return i}function n(t){for(var e=1,i=arguments.length;e<i;e++)t.appendChild(arguments[e]);return t}var r=function(){var t=o("style",{type:"text/css"});n(document.getElementsByTagName("head")[0],t);return t.sheet||t.styleSheet}();function s(t,o,n,s){var a=["opacity",o,~~(t*100),n,s].join("-"),f=.01+n/s*100,l=Math.max(1-(1-t)/o*(100-f),t),d=i.substring(0,i.indexOf("Animation")).toLowerCase(),u=d&&"-"+d+"-"||"";if(!e[a]){r.insertRule("@"+u+"keyframes "+a+"{"+"0%{opacity:"+l+"}"+f+"%{opacity:"+t+"}"+(f+.01)+"%{opacity:1}"+(f+o)%100+"%{opacity:"+t+"}"+"100%{opacity:"+l+"}"+"}",r.cssRules.length);e[a]=1}return a}function a(e,i){var o=e.style,n,r;if(o[i]!==undefined)return i;i=i.charAt(0).toUpperCase()+i.slice(1);for(r=0;r<t.length;r++){n=t[r]+i;if(o[n]!==undefined)return n}}function f(t,e){for(var i in e)t.style[a(t,i)||i]=e[i];return t}function l(t){for(var e=1;e<arguments.length;e++){var i=arguments[e];for(var o in i)if(t[o]===undefined)t[o]=i[o]}return t}function d(t){var e={x:t.offsetLeft,y:t.offsetTop};while(t=t.offsetParent)e.x+=t.offsetLeft,e.y+=t.offsetTop;return e}var u={lines:12,length:7,width:5,radius:10,rotate:0,corners:1,color:"#000",direction:1,speed:1,trail:100,opacity:1/4,fps:20,zIndex:2e9,className:"spinner",top:"auto",left:"auto",position:"relative"};function p(t){if(typeof this=="undefined")return new p(t);this.opts=l(t||{},p.defaults,u)}p.defaults={};l(p.prototype,{spin:function(t){this.stop();var e=this,n=e.opts,r=e.el=f(o(0,{className:n.className}),{position:n.position,width:0,zIndex:n.zIndex}),s=n.radius+n.length+n.width,a,l;if(t){t.insertBefore(r,t.firstChild||null);l=d(t);a=d(r);f(r,{left:(n.left=="auto"?l.x-a.x+(t.offsetWidth>>1):parseInt(n.left,10)+s)+"px",top:(n.top=="auto"?l.y-a.y+(t.offsetHeight>>1):parseInt(n.top,10)+s)+"px"})}r.setAttribute("role","progressbar");e.lines(r,e.opts);if(!i){var u=0,p=(n.lines-1)*(1-n.direction)/2,c,h=n.fps,m=h/n.speed,y=(1-n.opacity)/(m*n.trail/100),g=m/n.lines;(function v(){u++;for(var t=0;t<n.lines;t++){c=Math.max(1-(u+(n.lines-t)*g)%m*y,n.opacity);e.opacity(r,t*n.direction+p,c,n)}e.timeout=e.el&&setTimeout(v,~~(1e3/h))})()}return e},stop:function(){var t=this.el;if(t){clearTimeout(this.timeout);if(t.parentNode)t.parentNode.removeChild(t);this.el=undefined}return this},lines:function(t,e){var r=0,a=(e.lines-1)*(1-e.direction)/2,l;function d(t,i){return f(o(),{position:"absolute",width:e.length+e.width+"px",height:e.width+"px",background:t,boxShadow:i,transformOrigin:"left",transform:"rotate("+~~(360/e.lines*r+e.rotate)+"deg) translate("+e.radius+"px"+",0)",borderRadius:(e.corners*e.width>>1)+"px"})}for(;r<e.lines;r++){l=f(o(),{position:"absolute",top:1+~(e.width/2)+"px",transform:e.hwaccel?"translate3d(0,0,0)":"",opacity:e.opacity,animation:i&&s(e.opacity,e.trail,a+r*e.direction,e.lines)+" "+1/e.speed+"s linear infinite"});if(e.shadow)n(l,f(d("#000","0 0 4px "+"#000"),{top:2+"px"}));n(t,n(l,d(e.color,"0 0 1px rgba(0,0,0,.1)")))}return t},opacity:function(t,e,i){if(e<t.childNodes.length)t.childNodes[e].style.opacity=i}});function c(){function t(t,e){return o("<"+t+' xmlns="urn:schemas-microsoft.com:vml" class="spin-vml">',e)}r.addRule(".spin-vml","behavior:url(#default#VML)");p.prototype.lines=function(e,i){var o=i.length+i.width,r=2*o;function s(){return f(t("group",{coordsize:r+" "+r,coordorigin:-o+" "+-o}),{width:r,height:r})}var a=-(i.width+i.length)*2+"px",l=f(s(),{position:"absolute",top:a,left:a}),d;function u(e,r,a){n(l,n(f(s(),{rotation:360/i.lines*e+"deg",left:~~r}),n(f(t("roundrect",{arcsize:i.corners}),{width:o,height:i.width,left:i.radius,top:-i.width>>1,filter:a}),t("fill",{color:i.color,opacity:i.opacity}),t("stroke",{opacity:0}))))}if(i.shadow)for(d=1;d<=i.lines;d++)u(d,-2,"progid:DXImageTransform.Microsoft.Blur(pixelradius=2,makeshadow=1,shadowopacity=.3)");for(d=1;d<=i.lines;d++)u(d);return n(e,l)};p.prototype.opacity=function(t,e,i,o){var n=t.firstChild;o=o.shadow&&o.lines||0;if(n&&e+o<n.childNodes.length){n=n.childNodes[e+o];n=n&&n.firstChild;n=n&&n.firstChild;if(n)n.opacity=i}}}var h=f(o("group"),{behavior:"url(#default#VML)"});if(!a(h,"transform")&&h.adj)c();else i=a(h,"animation");return p});