RubyGems - myexperiment-rest - Versions diffs - 0.2.7 → 0.2.8 - Mend

myexperiment-rest 0.2.7 → 0.2.8

Files changed (89) hide show

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data/doc/files/README.html +0 -148
data/doc/files/bin/get_workflow_data_rb.html +0 -116
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data/doc/classes/TestReadWorkflow.src/M000004.html DELETED Viewed

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-  <title>test_workflows_ios (TestReadWorkflow)</title>
-  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
-  <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
-</head>
-<body class="standalone-code">
-  <pre><span class="ruby-comment cmt"># File test/test_read_workflow.rb, line 31</span>
-  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">test_workflows_ios</span>
-    <span class="ruby-identifier">assert_equal</span> <span class="ruby-value str">'Query'</span>, <span class="ruby-ivar">@wkf</span>.<span class="ruby-identifier">workflow</span>.<span class="ruby-identifier">inputs</span>[<span class="ruby-value">0</span>].<span class="ruby-identifier">name</span>, <span class="ruby-value str">&quot;Workflow's first input name not properly initialized!&quot;</span>
-    <span class="ruby-identifier">assert_equal</span> <span class="ruby-value str">'Maximum number of documents to extract proteins from.'</span>, <span class="ruby-ivar">@wkf</span>.<span class="ruby-identifier">workflow</span>.<span class="ruby-identifier">inputs</span>[<span class="ruby-value">1</span>].<span class="ruby-identifier">descriptions</span>[<span class="ruby-value">1</span>], <span class="ruby-value str">&quot;Workflow's second input's description not properly initialized!&quot;</span>
-    <span class="ruby-identifier">assert_equal</span> <span class="ruby-value str">'&quot;transmembrane proteins&quot; AND amyloid'</span>, <span class="ruby-ivar">@wkf</span>.<span class="ruby-identifier">workflow</span>.<span class="ruby-identifier">inputs</span>[<span class="ruby-value">0</span>].<span class="ruby-identifier">examples</span>[<span class="ruby-value">0</span>], <span class="ruby-value str">&quot;Workflow's first input's example not properly initialized!&quot;</span>
-  <span class="ruby-keyword kw">end</span></pre>
-</body>
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1	- Thu, 21 Jul 2011 18:40:11 +0200

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-<head>
-  <title>File: README</title>
-  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
-  <meta http-equiv="Content-Script-Type" content="text/javascript" />
-  <link rel="stylesheet" href=".././rdoc-style.css" type="text/css" media="screen" />
-  <script type="text/javascript">
-  // <![CDATA[
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-    else
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-    elemStyle = elem.style;
-    if ( elemStyle.display != "block" ) {
-      elemStyle.display = "block"
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-      elemStyle.display = "none"
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-    return true;
-  }
-  // Make codeblocks hidden by default
-  document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
-  // ]]>
-  </script>
-</head>
-<body>
-  <div id="fileHeader">
-    <h1>README</h1>
-    <table class="header-table">
-    <tr class="top-aligned-row">
-      <td><strong>Path:</strong></td>
-      <td>README
-      </td>
-    </tr>
-    <tr class="top-aligned-row">
-      <td><strong>Last Update:</strong></td>
-      <td>Wed Jul 20 19:31:37 +0200 2011</td>
-    </tr>
-    </table>
-  </div>
-  <!-- banner header -->
-  <div id="bodyContent">
-  <div id="contextContent">
-    <div id="description">
-      <h1>MyExperiment Interaction via REST</h1>
-<table>
-<tr><td valign="top">Authors:</td><td>Konstantinos Karasavvas
-</td></tr>
-<tr><td valign="top">Gem Version:</td><td>0.2.6
-</td></tr>
-<tr><td valign="top">Contact:</td><td><a href="mailto:kostas.karasavvas@nbic.nl">kostas.karasavvas@nbic.nl</a>
-</td></tr>
-<tr><td valign="top">Licence:</td><td>MIT (See LICENCE or <a
-href="http://www.opensource.org/licenses/mit-license">www.opensource.org/licenses/mit-license</a>)
-</td></tr>
-<tr><td valign="top">Copyright:</td><td>(c) 2010 Netherlands Bioinformatics Centre, The Netherlands
-</td></tr>
-</table>
-<h2>Description</h2>
-<p>
-This is a simple library to access data on myExperiment via its REST API.
-</p>
-<h2>Features/Problems</h2>
-<p>
-Only a subset of myExperiment workflow data can be currently accessed.
-</p>
-<h2>Usage</h2>
-<p>
-There is an example script inside the <tt>bin</tt> directory that
-demonstrates how you can use the library.
-</p>
-<h2>Installation</h2>
-<dl>
-<dt>sudo</dt><dd>gem install myexperiment-rest
-</dd>
-</dl>
-<h2>References</h2>
-<table>
-<tr><td valign="top">myExperiment:</td><td><a href="http://www.myexperiment.org">www.myexperiment.org</a>
-</td></tr>
-</table>
-    </div>
-   </div>
-  </div>
-    <!-- if includes -->
-    <div id="section">
-    <!-- if method_list -->
-  </div>
-<div id="validator-badges">
-  <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
-</div>
-</body>
-</html>

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-<head>
-  <title>File: get_workflow_data.rb</title>
-  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
-  <meta http-equiv="Content-Script-Type" content="text/javascript" />
-  <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
-  <script type="text/javascript">
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-  </script>
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-<body>
-  <div id="fileHeader">
-    <h1>get_workflow_data.rb</h1>
-    <table class="header-table">
-    <tr class="top-aligned-row">
-      <td><strong>Path:</strong></td>
-      <td>bin/get_workflow_data.rb
-      </td>
-    </tr>
-    <tr class="top-aligned-row">
-      <td><strong>Last Update:</strong></td>
-      <td>Thu May 19 17:53:18 +0200 2011</td>
-    </tr>
-    </table>
-  </div>
-  <!-- banner header -->
-  <div id="bodyContent">
-  <div id="contextContent">
-    <div id="requires-list">
-      <h3 class="section-bar">Required files</h3>
-      <div class="name-list">
-      rubygems&nbsp;&nbsp;
-      myexperiment-rest&nbsp;&nbsp;
-      </div>
-    </div>
-   </div>
-  </div>
-    <!-- if includes -->
-    <div id="includes">
-      <h3 class="section-bar">Included Modules</h3>
-      <div id="includes-list">
-        <span class="include-name"><a href="../../classes/MyExperimentREST.html">MyExperimentREST</a></span>
-      </div>
-    </div>
-    <div id="section">
-    <!-- if method_list -->
-  </div>
-<div id="validator-badges">
-  <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
-</div>
-</body>
-</html>

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-<head>
-  <title>File: my_experiment_rest.rb</title>
-  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
-  <meta http-equiv="Content-Script-Type" content="text/javascript" />
-  <link rel="stylesheet" href="../../.././rdoc-style.css" type="text/css" media="screen" />
-  <script type="text/javascript">
-  // <![CDATA[
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-<body>
-  <div id="fileHeader">
-    <h1>my_experiment_rest.rb</h1>
-    <table class="header-table">
-    <tr class="top-aligned-row">
-      <td><strong>Path:</strong></td>
-      <td>lib/myexperiment-rest/my_experiment_rest.rb
-      </td>
-    </tr>
-    <tr class="top-aligned-row">
-      <td><strong>Last Update:</strong></td>
-      <td>Mon Dec 13 16:32:05 +0100 2010</td>
-    </tr>
-    </table>
-  </div>
-  <!-- banner header -->
-  <div id="bodyContent">
-  <div id="contextContent">
-    <div id="requires-list">
-      <h3 class="section-bar">Required files</h3>
-      <div class="name-list">
-      rubygems&nbsp;&nbsp;
-      rest_client&nbsp;&nbsp;
-      libxml&nbsp;&nbsp;
-      </div>
-    </div>
-   </div>
-  </div>
-    <!-- if includes -->
-    <div id="section">
-    <!-- if method_list -->
-  </div>
-<div id="validator-badges">
-  <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
-</div>
-</body>
-</html>

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-  <title>File: myexperiment_rest.rb</title>
-  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
-  <meta http-equiv="Content-Script-Type" content="text/javascript" />
-  <link rel="stylesheet" href="../../.././rdoc-style.css" type="text/css" media="screen" />
-  <script type="text/javascript">
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-</head>
-<body>
-  <div id="fileHeader">
-    <h1>myexperiment_rest.rb</h1>
-    <table class="header-table">
-    <tr class="top-aligned-row">
-      <td><strong>Path:</strong></td>
-      <td>lib/myexperiment-rest/myexperiment_rest.rb
-      </td>
-    </tr>
-    <tr class="top-aligned-row">
-      <td><strong>Last Update:</strong></td>
-      <td>Thu May 19 18:05:57 +0200 2011</td>
-    </tr>
-    </table>
-  </div>
-  <!-- banner header -->
-  <div id="bodyContent">
-  <div id="contextContent">
-    <div id="requires-list">
-      <h3 class="section-bar">Required files</h3>
-      <div class="name-list">
-      rubygems&nbsp;&nbsp;
-      rest_client&nbsp;&nbsp;
-      libxml&nbsp;&nbsp;
-      </div>
-    </div>
-   </div>
-  </div>
-    <!-- if includes -->
-    <div id="section">
-    <!-- if method_list -->
-  </div>
-<div id="validator-badges">
-  <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
-</div>
-</body>
-</html>