mdarray 0.4.0-java
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- data/LICENSE.txt +54 -0
- data/LICENSE.txt~ +32 -0
- data/README.md +21 -0
- data/Rakefile +40 -0
- data/lib/env.rb +11 -0
- data/lib/mdarray.rb +414 -0
- data/lib/mdarray/access.rb +237 -0
- data/lib/mdarray/counter.rb +779 -0
- data/lib/mdarray/creation.rb +413 -0
- data/lib/mdarray/fast_non_numerical.rb +102 -0
- data/lib/mdarray/function_creation.rb +100 -0
- data/lib/mdarray/function_map.rb +56 -0
- data/lib/mdarray/hierarchy.rb +177 -0
- data/lib/mdarray/operators.rb +220 -0
- data/lib/mdarray/printing.rb +275 -0
- data/lib/mdarray/proc_util.rb +159 -0
- data/lib/mdarray/ruby_functions.rb +78 -0
- data/lib/mdarray/ruby_generic_functions.rb +37 -0
- data/lib/mdarray/ruby_math.rb +57 -0
- data/lib/mdarray/ruby_numeric_functions.rb +187 -0
- data/lib/mdarray/ruby_operators.rb +201 -0
- data/lib/mdarray/ruby_stats.rb +149 -0
- data/lib/mdarray/slices.rb +185 -0
- data/lib/mdarray/statistics.rb +86 -0
- data/test/arithmetic_casting.rb +195 -0
- data/test/env.rb +50 -0
- data/test/test_access.rb +247 -0
- data/test/test_boolean.rb +67 -0
- data/test/test_comparison.rb +126 -0
- data/test/test_complete.rb +69 -0
- data/test/test_counter.rb +184 -0
- data/test/test_creation.rb +364 -0
- data/test/test_error.rb +53 -0
- data/test/test_lazy.rb +52 -0
- data/test/test_operator.rb +337 -0
- data/test/test_printing.rb +66 -0
- data/test/test_shape.rb +96 -0
- data/test/test_slices.rb +146 -0
- data/test/test_speed.rb +311 -0
- data/test/test_statistics.rb +45 -0
- data/test/test_trigonometry.rb +60 -0
- data/vendor/netcdfAll-4.3.16.jar +0 -0
- data/version.rb +2 -0
- metadata +197 -0
data/test/env.rb
ADDED
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require 'rbconfig'
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# Config::CONFIG['host_os'] # returns mswin32 on Windows, for example
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# p Config::CONFIG
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# Fix environment variable for MultiCell
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# Prepare environment to work inside Cygwin
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# Return the cygpath of a path
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def cygpath(path)
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`cygpath -p -m #{path}`.tr("\n", "")
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end
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# Add path to load path
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def mklib(path, home_path = true)
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if (home_path)
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lib = path + "/lib"
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else
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lib = path
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end
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$LOAD_PATH << `cygpath -p -m #{lib}`.tr("\n", "")
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end
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# Home directory for MDArray
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$MDARRAY_HOME_DIR = "/home/zxb3/Desenv/MDArray"
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mklib($MDARRAY_HOME_DIR)
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# Home directory for MultiCell
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$MC_HOME_DIR = "/home/zxb3/Desenv/MultiCell"
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mklib($MC_HOME_DIR)
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# Home directory for NcInterface
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$NCI_HOME_DIR = "/home/zxb3/Desenv/NcInterface"
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mklib($NCI_HOME_DIR)
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# Home directory for BM&F Bovespa files
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$BMF_BOVESPA_DIR = "/home/zxb3/Investimentos/SeriesHistoricas/BMF_BOVESPA/"
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# Home directory for results
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$RESULT_HOME_DIR = $MC_HOME_DIR + "/results/"
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=begin
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# Build Jruby classpath from environment classpath
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ENV['WCLASSPATH'].split(';').each do |path|
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$CLASSPATH << cygpath(path)
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end
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=end
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data/test/test_access.rb
ADDED
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# -*- coding: utf-8 -*-
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##########################################################################################
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# Copyright © 2013 Rodrigo Botafogo. All Rights Reserved. Permission to use, copy, modify,
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# and distribute this software and its documentation for educational, research, and
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# not-for-profit purposes, without fee and without a signed licensing agreement, is hereby
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# granted, provided that the above copyright notice, this paragraph and the following two
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# paragraphs appear in all copies, modifications, and distributions. Contact Rodrigo
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# Botafogo - rodrigo.a.botafogo@gmail.com for commercial licensing opportunities.
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#
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# IN NO EVENT SHALL RODRIGO BOTAFOGO BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL,
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# INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF
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# THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF RODRIGO BOTAFOGO HAS BEEN ADVISED OF THE
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# POSSIBILITY OF SUCH DAMAGE.
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#
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# RODRIGO BOTAFOGO SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
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# THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE
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# SOFTWARE AND ACCOMPANYING DOCUMENTATION, IF ANY, PROVIDED HEREUNDER IS PROVIDED "AS IS".
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# RODRIGO BOTAFOGO HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS,
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# OR MODIFICATIONS.
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##########################################################################################
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require 'rubygems'
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require "test/unit"
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require 'shoulda'
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require 'mdarray'
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class MDArrayTest < Test::Unit::TestCase
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context "Access Tests" do
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setup do
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# create a byte array filled with 0's
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@a = MDArray.byte([2, 3, 4])
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# create double array
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@b = MDArray.double([2, 3, 4])
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end
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#-------------------------------------------------------------------------------------
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#
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#-------------------------------------------------------------------------------------
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should "allow data assignment and retrieval" do
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assert_equal(0, @a[1, 2, 3])
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# assign values to a using [] operator
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@a[0, 0, 0] = 10
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@a[0, 1, 2] = 10
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@a[0, 1, 3] = 10
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assert_equal(10, @a[0, 0, 0])
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assert_equal(10, @a[0, 1, 2])
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assert_equal(10, @a[0, 1, 3])
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assert_equal(0, @a[0, 0, 1])
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# assigning a float value to a byte array type will truncate the data
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@a[0, 0, 0] = 1.5
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assert_equal(1, @a[0, 0, 0])
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assert_equal(0.0, @b[1, 1, 1])
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# assign values to b using set method
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@b.set([1, 1, 1], 5.25)
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assert_equal(5.25, @b.get([1, 1, 1]))
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end
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#-------------------------------------------------------------------------------------
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#
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#-------------------------------------------------------------------------------------
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should "generate RuntimeError and RangeError when counter is wrong" do
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# When counter error in [], we get a RuntimeError.
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# RuntimeError... dimension error on b
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assert_raise ( RuntimeError ) { @b[0, 0, 0, 0] = 11.34 }
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# RuntimeError... shape of first dimension too big
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assert_raise ( RuntimeError ) { @b[5, 1, 1] = 7.32 }
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# RangeError... shape of second dimension too big
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assert_raise ( RuntimeError ) { @b[1, 3, 1] = 7.32 }
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# When counter error is in get, we get a RangeError. Method get is faster than
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# method [] as get does not do any counter validation nor convertion. [] does
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# counter validation and convertion allowing for the use of negative counter
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# and range.
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assert_raise ( RangeError ) { @b.set([0, 0, 0, 0], 11.34) }
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assert_raise ( RangeError ) { @b.set([5, 1, 1], 7.32) }
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assert_raise ( RangeError ) { @b.set([1, 3, 1], 7.32) }
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end
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#-------------------------------------------------------------------------------------
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# It is possible to use negative indexing by using methods set and get. Indexing with
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# Unlike NumPy, [] does not allow negative indices. Accessing an array with [] is
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# faster than using get as [] does not require convertion of negative indices to
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# positive ones.
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#-------------------------------------------------------------------------------------
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should "allow working with negative indices" do
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@b[1, -1, -1] = 4.20
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assert_equal(4.20, @b[1, 2, 3])
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@b[-1, -1, -1] = 10.35
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# using negative indices with set raises an exeption...
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assert_raise ( RangeError ) { @b.set([-1, -1, -1], 11.40) }
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# but works with []
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assert_equal(10.35, @b[-1, -1, -1])
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assert_equal(@b[-1, -1, -1], 10.35)
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# using negative indices with get raises an exeption
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assert_raise ( RangeError ) { @b.get([-1, -1, -1]) }
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assert_equal(10.35, @b[1, 2, 3])
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# RuntimeError... shape of first dimension too big (on the negative side)
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assert_raise ( RangeError ) { @b.set([-5, 1, 1], 7.32) }
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# RuntimeError... shape of second dimension too big (on the negative side)
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assert_raise ( RangeError ) { @b.set([1, -4, 1], 7.32) }
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end
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#-------------------------------------------------------------------------------------
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#
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#-------------------------------------------------------------------------------------
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should "output data in string format" do
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a = MDArray.arange(10)
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assert_equal("0 1 2 3 4 5 6 7 8 9 ", a.to_string)
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end
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#-------------------------------------------------------------------------------------
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#
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#-------------------------------------------------------------------------------------
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should "allow array traversal in cannonical order" do
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a = MDArray.arange(10)
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# set the value at the current index position. Raise an exception as there
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# is no currently defined position. Note that a[] refers to the current counter
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# position
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assert_raise ( RuntimeError ) { a[] = 18.25 }
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# gets the value at the current index position. Raises an exception as
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# current position not defined
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assert_raise ( RuntimeError) { a[] }
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# reset_traversal initializes the traversal, but leaves the counter in an invalid
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# position
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a.reset_traversal
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# move to the first position
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a.next
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assert_equal(0, a[])
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# sets the value at the current position. No need to give the counter.
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a[] = 10
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assert_equal(10, a[])
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# move to the next position
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a.next
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assert_equal(1, a[])
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# get_next returns the next position and moves the counter. Method get_next and
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# set_next are "fast" methods in the sense that they do not require any counter
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# correction.
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assert_equal(2, a.get_next)
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assert_equal(2, a[])
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assert_equal(3, a.get_next)
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assert_equal(4, a.get_next)
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end
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#-------------------------------------------------------------------------------------
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#
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#-------------------------------------------------------------------------------------
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should "allow array traversal using each like methods" do
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a = MDArray.arange(10)
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counter = 0
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a.each do |elmt|
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assert_equal(counter, elmt)
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counter += 1
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end
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a.reset_traversal
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a.next
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assert_equal(0, a[])
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# continues the each from where the counter stoped previously
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counter = 1
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a.each_cont do |elmt|
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assert_equal(counter, elmt)
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counter += 1
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end
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# each_with_counter returns the elmt and it's index
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a.reshape!([5, 2])
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counter = 0
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a.each_with_index do |elmt, index|
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assert_equal(counter, elmt)
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counter += 1
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end
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# Collect returns a one dimensional ruby array
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b = a.collect { |val| val * 2}
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end
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#-------------------------------------------------------------------------------------
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#
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#-------------------------------------------------------------------------------------
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=begin
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should "traverse the array over given axes" do
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@b.each_over_axes([0]) do |elmt|
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p elmt
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end
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end
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=end
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#-------------------------------------------------------------------------------------
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#
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#-------------------------------------------------------------------------------------
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should "have the right precision for the type" do
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b = MDArray.float([2, 3], [0, 1, 2, 3, 4, 5])
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assert_equal(1.0, b[0, 1])
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# float should work with 1 decimal precision
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b[0, 1] = 1.5
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assert_equal(1.5, b[0, 1])
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c = MDArray.build("double", [2, 3], [0, 1, 2, 3, 4, 5])
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c[0, 0] = 1.51
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assert_equal(1.51, c[0, 0])
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end
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end
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end
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@@ -0,0 +1,67 @@
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require 'rubygems'
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require "test/unit"
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require 'shoulda'
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require 'env'
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require 'mdarray'
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class MDArrayTest < Test::Unit::TestCase
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context "Arithmetic Tests" do
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setup do
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# create a = [20 30 40 50]
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@a = MDArray.arange(20, 60, 10)
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# create b = [0 1 2 3]
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@b = MDArray.arange(4)
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# create c = [1.87 5.34 7.18 8.84]
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@c = MDArray.double([4], [1.87, 5.34, 7.18, 8.84])
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# create d = [[1 2] [3 4]]
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@d = MDArray.int([2, 2], [1, 2, 3, 4])
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# creates an array from a function (actually a block). The name fromfunction
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# is preserved to maintain API compatibility with NumPy (is it necessary?)
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@e = MDArray.fromfunction("double", [4, 5, 6]) do |x, y, z|
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3.21 * (x + y + z)
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end
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@f = MDArray.fromfunction("double", [4, 5, 6]) do |x, y, z|
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9.57 * x + y + z
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end
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@bool1 = MDArray.boolean([4], [true, false, true, false])
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@bool2 = MDArray.boolean([4], [false, false, true, true])
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end # setup
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#-------------------------------------------------------------------------------------
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#
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#-------------------------------------------------------------------------------------
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should "work with boolean arrays and operators" do
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# elementwise boolean operations supported
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result = @bool1.and(@bool2)
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assert_equal("false false true false ", result.to_string)
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result = @bool2.and(@bool1)
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assert_equal("false false true false ", result.to_string)
|
48
|
+
|
49
|
+
# Cannot overload and, so using & as an alias to and
|
50
|
+
result = @bool1 & @bool2
|
51
|
+
assert_equal("false false true false ", result.to_string)
|
52
|
+
|
53
|
+
result = @bool2.or(@bool1)
|
54
|
+
assert_equal("true false true true ", result.to_string)
|
55
|
+
|
56
|
+
# Cannot overload or, so using | as an alias to or
|
57
|
+
result = @bool2 | @bool1
|
58
|
+
assert_equal("true false true true ", result.to_string)
|
59
|
+
|
60
|
+
#result = !@bool1
|
61
|
+
#assert_equal("false true false true ", result.to_string)
|
62
|
+
|
63
|
+
end
|
64
|
+
|
65
|
+
end
|
66
|
+
|
67
|
+
end
|
@@ -0,0 +1,126 @@
|
|
1
|
+
# -*- coding: utf-8 -*-
|
2
|
+
|
3
|
+
##########################################################################################
|
4
|
+
# Copyright © 2013 Rodrigo Botafogo. All Rights Reserved. Permission to use, copy, modify,
|
5
|
+
# and distribute this software and its documentation, without fee and without a signed
|
6
|
+
# licensing agreement, is hereby granted, provided that the above copyright notice, this
|
7
|
+
# paragraph and the following two paragraphs appear in all copies, modifications, and
|
8
|
+
# distributions.
|
9
|
+
#
|
10
|
+
# IN NO EVENT SHALL RODRIGO BOTAFOGO BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL,
|
11
|
+
# INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF
|
12
|
+
# THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF RODRIGO BOTAFOGO HAS BEEN ADVISED OF THE
|
13
|
+
# POSSIBILITY OF SUCH DAMAGE.
|
14
|
+
#
|
15
|
+
# RODRIGO BOTAFOGO SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
|
16
|
+
# THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE
|
17
|
+
# SOFTWARE AND ACCOMPANYING DOCUMENTATION, IF ANY, PROVIDED HEREUNDER IS PROVIDED "AS IS".
|
18
|
+
# RODRIGO BOTAFOGO HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS,
|
19
|
+
# OR MODIFICATIONS.
|
20
|
+
##########################################################################################
|
21
|
+
|
22
|
+
require 'rubygems'
|
23
|
+
require "test/unit"
|
24
|
+
require 'shoulda'
|
25
|
+
|
26
|
+
require 'mdarray'
|
27
|
+
|
28
|
+
class MDArrayTest < Test::Unit::TestCase
|
29
|
+
|
30
|
+
context "Comparison Tests" do
|
31
|
+
|
32
|
+
setup do
|
33
|
+
|
34
|
+
# create a = [20 30 40 50]
|
35
|
+
@a = MDArray.arange(20, 60, 10)
|
36
|
+
# create b = [0 1 2 3]
|
37
|
+
@b = MDArray.arange(4)
|
38
|
+
# create c = [1.87 5.34 7.18 8.84]
|
39
|
+
@c = MDArray.double([4], [1.87, 5.34, 40.18, 84.84])
|
40
|
+
# create d = [[1 2] [3 4]]
|
41
|
+
@d = MDArray.int([2, 2], [1, 2, 3, 4])
|
42
|
+
# creates an array from a function (actually a block). The name fromfunction
|
43
|
+
# is preserved to maintain API compatibility with NumPy (is it necessary?)
|
44
|
+
@e = MDArray.fromfunction("double", [4, 5, 6]) do |x, y, z|
|
45
|
+
3.21 * (x + y + z)
|
46
|
+
end
|
47
|
+
@f = MDArray.fromfunction("double", [4, 5, 6]) do |x, y, z|
|
48
|
+
9.57 * x + y + z
|
49
|
+
end
|
50
|
+
@g = MDArray.boolean([4], [true, true, true, false])
|
51
|
+
|
52
|
+
end # setup
|
53
|
+
|
54
|
+
#-------------------------------------------------------------------------------------
|
55
|
+
#
|
56
|
+
#-------------------------------------------------------------------------------------
|
57
|
+
|
58
|
+
should "compare elementwise" do
|
59
|
+
|
60
|
+
result = @a > 30
|
61
|
+
assert_equal("false false true true ", result.to_string)
|
62
|
+
|
63
|
+
result = @a > @b
|
64
|
+
assert_equal("true true true true ", result.to_string)
|
65
|
+
|
66
|
+
result = @a > @c
|
67
|
+
assert_equal("true true false false ", result.to_string)
|
68
|
+
|
69
|
+
result = @c < @a
|
70
|
+
assert_equal("true true false false ", result.to_string)
|
71
|
+
|
72
|
+
result = @c == @c
|
73
|
+
assert_equal("true true true true ", result.to_string)
|
74
|
+
|
75
|
+
result = @a.ge(30)
|
76
|
+
assert_equal(result[0], false)
|
77
|
+
assert_equal(result[1], true)
|
78
|
+
|
79
|
+
# also works with logical operators
|
80
|
+
c = @a > 20.5
|
81
|
+
assert_equal("false true true true ", c.to_string)
|
82
|
+
|
83
|
+
# TODO: assert_equal
|
84
|
+
result = @a.le(30)
|
85
|
+
|
86
|
+
# TODO: assert_equal
|
87
|
+
result = @e.le(15)
|
88
|
+
|
89
|
+
# TODO: assert_equal
|
90
|
+
result = @e.le(@f)
|
91
|
+
|
92
|
+
# TODO: assert_equal
|
93
|
+
result = @a >= 30.5
|
94
|
+
|
95
|
+
# TODO: assert_equal
|
96
|
+
result = @a <= @a
|
97
|
+
|
98
|
+
# TODO: assert_equal
|
99
|
+
result = @e < @f
|
100
|
+
|
101
|
+
# TODO: assert_equal
|
102
|
+
result = @f > @e
|
103
|
+
|
104
|
+
assert_raise ( NoMethodError ) { result = @g < @g }
|
105
|
+
|
106
|
+
end
|
107
|
+
|
108
|
+
#-------------------------------------------------------------------------------------
|
109
|
+
#
|
110
|
+
#-------------------------------------------------------------------------------------
|
111
|
+
|
112
|
+
should "allow coercion on comparison" do
|
113
|
+
|
114
|
+
result = 30.001 > @a
|
115
|
+
assert_equal("true true false false ", result.to_string)
|
116
|
+
|
117
|
+
c = 25 > @a
|
118
|
+
assert_equal("true false false false ", c.to_string)
|
119
|
+
|
120
|
+
end
|
121
|
+
|
122
|
+
end
|
123
|
+
|
124
|
+
end
|
125
|
+
|
126
|
+
|