mdarray 0.4.0-java
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- data/LICENSE.txt +54 -0
- data/LICENSE.txt~ +32 -0
- data/README.md +21 -0
- data/Rakefile +40 -0
- data/lib/env.rb +11 -0
- data/lib/mdarray.rb +414 -0
- data/lib/mdarray/access.rb +237 -0
- data/lib/mdarray/counter.rb +779 -0
- data/lib/mdarray/creation.rb +413 -0
- data/lib/mdarray/fast_non_numerical.rb +102 -0
- data/lib/mdarray/function_creation.rb +100 -0
- data/lib/mdarray/function_map.rb +56 -0
- data/lib/mdarray/hierarchy.rb +177 -0
- data/lib/mdarray/operators.rb +220 -0
- data/lib/mdarray/printing.rb +275 -0
- data/lib/mdarray/proc_util.rb +159 -0
- data/lib/mdarray/ruby_functions.rb +78 -0
- data/lib/mdarray/ruby_generic_functions.rb +37 -0
- data/lib/mdarray/ruby_math.rb +57 -0
- data/lib/mdarray/ruby_numeric_functions.rb +187 -0
- data/lib/mdarray/ruby_operators.rb +201 -0
- data/lib/mdarray/ruby_stats.rb +149 -0
- data/lib/mdarray/slices.rb +185 -0
- data/lib/mdarray/statistics.rb +86 -0
- data/test/arithmetic_casting.rb +195 -0
- data/test/env.rb +50 -0
- data/test/test_access.rb +247 -0
- data/test/test_boolean.rb +67 -0
- data/test/test_comparison.rb +126 -0
- data/test/test_complete.rb +69 -0
- data/test/test_counter.rb +184 -0
- data/test/test_creation.rb +364 -0
- data/test/test_error.rb +53 -0
- data/test/test_lazy.rb +52 -0
- data/test/test_operator.rb +337 -0
- data/test/test_printing.rb +66 -0
- data/test/test_shape.rb +96 -0
- data/test/test_slices.rb +146 -0
- data/test/test_speed.rb +311 -0
- data/test/test_statistics.rb +45 -0
- data/test/test_trigonometry.rb +60 -0
- data/vendor/netcdfAll-4.3.16.jar +0 -0
- data/version.rb +2 -0
- metadata +197 -0
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# -*- coding: utf-8 -*-
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##########################################################################################
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# Copyright © 2013 Rodrigo Botafogo. All Rights Reserved. Permission to use, copy, modify,
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# and distribute this software and its documentation, without fee and without a signed
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# licensing agreement, is hereby granted, provided that the above copyright notice, this
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# paragraph and the following two paragraphs appear in all copies, modifications, and
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# distributions.
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#
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# IN NO EVENT SHALL RODRIGO BOTAFOGO BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL,
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# INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF
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# THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF RODRIGO BOTAFOGO HAS BEEN ADVISED OF THE
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# POSSIBILITY OF SUCH DAMAGE.
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#
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# RODRIGO BOTAFOGO SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
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# THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE
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# SOFTWARE AND ACCOMPANYING DOCUMENTATION, IF ANY, PROVIDED HEREUNDER IS PROVIDED "AS IS".
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# RODRIGO BOTAFOGO HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS,
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# OR MODIFICATIONS.
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##########################################################################################
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#======================================================================================
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#
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#======================================================================================
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class MDArray
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# attributes necessary for printing
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attr_writer :nan_str
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attr_writer :inf_str
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attr_writer :summary_edge_items
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attr_writer :summary_threshold
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attr_writer :max_line_width
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attr_writer :separator
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attr_writer :prefix
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attr_writer :formatter
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attr_writer :int_output_size
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attr_writer :float_output_precision
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attr_writer :float_output_suppress_small
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def printing_defaults
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@nan_str = "nan"
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@inf_str = "inf"
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@summary_edge_items = 3 # repr N leading and trailing items of each dimension
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@summary_threshold = 1000 # total items > triggers array summarization
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@max_line_width = 80
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@separator = " "
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@prefix = " "
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@int_output_size = 2
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@float_output_precision = 2
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@float_output_suppress_small = false
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case type
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when "int"
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@formatter = method(:integer_formatter)
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when "float"
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@formatter = method(:float_formatter)
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when "double"
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@formatter = method(:float_formatter)
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else
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@formatter = method(:default_formatter)
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end
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end
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def print
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(rank == 1)? print1d : printnd
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Kernel.print "\n"
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end
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def csv1d
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each_with_counter do |elmt, index|
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if (!is_zero?(index))
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Kernel.print @separator
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end
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Kernel.printf @formatter.call(elmt)
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end
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Kernel.print "\n"
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end
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def to_csv
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@separator = ", "
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counter = Counter.new(self)
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# find the axes and sizes
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axes = Array.new
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sizes = Array.new
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(0..(rank - 2)).each do |val|
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axes << val
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sizes << 1
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end
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sizes << shape[rank - 1]
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counter.each_along_axes(axes) do |ct, axis|
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(0..ct.size - 2).each do |i|
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Kernel.print ct[i]
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Kernel.print @separator
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end
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section(ct, sizes).csv1d
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end
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end
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def print1d
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Kernel.print "["
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each_with_counter do |elmt, index|
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if (!is_zero?(index))
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Kernel.print @separator
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end
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Kernel.printf @formatter.call(elmt)
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end
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Kernel.print "]"
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end
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def apply_over_axes(axes)
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counter = Counter.new(self)
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# find the axes and sizes
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slice = Array.new(rank, 0)
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sizes = Array.new(rank, 1)
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(0..rank).each do |i|
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if (axes[i] != i)
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sizes[i] = shape[i]
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end
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end
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p "axes: #{axes}, slice: #{slice}, sizes: #{sizes}"
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counter.each_along_axes(axes) do |ct, axis|
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section(ct, sizes)
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end
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end
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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private
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def integer_formatter(integer)
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# "%0#{@int_output_size}d" % integer
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integer.to_s
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end
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def float_formatter(float)
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"%.#{@float_output_precision}f" % float
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end
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def default_formatter(val)
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val.to_s
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end
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def is_zero?(counter)
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counter.each do |i|
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if (i != 0)
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return false
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end
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end
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return true
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end
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def printnd
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counter = Counter.new(self)
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# find the axes and sizes
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axes = Array.new
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sizes = Array.new
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(0..(rank - 2)).each do |val|
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axes << val
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sizes << 1
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end
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sizes << shape[rank - 1]
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Kernel.print "[" * (rank - 1)
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last_axis = -1
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counter.each_along_axes(axes) do |ct, axis|
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if (axis == last_axis)
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Kernel.print "\n"
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Kernel.print @prefix * (axis + 1)
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elsif (axis < last_axis)
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Kernel.print "]" * (last_axis - axis) + "\n\n"
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Kernel.print @prefix * (axis + 1)
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Kernel.print "[" * (last_axis - axis)
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axis = last_axis
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end
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section(ct, sizes).print1d
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last_axis = rank - 2
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end
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Kernel.print "]" * (rank - 1) + "\n"
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end
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def copy_print_parameters(section)
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# section printing paramters should be the same as the original MDArray
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section.nan_str = @nan_str
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section.inf_str = @inf_str
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section.summary_edge_items = @summary_edge_items
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section.summary_threshold = @summary_threshold
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section.max_line_width = @max_line_width
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section.separator = @separator
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section.prefix = @prefix
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section.int_output_size = @int_output_size
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section.float_output_precision = @float_output_precision
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section.float_output_suppress_small = @float_output_suppress_small
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end
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end # MDArray
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# -*- coding: utf-8 -*-
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##########################################################################################
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# Copyright © 2013 Rodrigo Botafogo. All Rights Reserved. Permission to use, copy, modify,
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# and distribute this software and its documentation, without fee and without a signed
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# licensing agreement, is hereby granted, provided that the above copyright notice, this
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# paragraph and the following two paragraphs appear in all copies, modifications, and
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# distributions.
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#
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# IN NO EVENT SHALL RODRIGO BOTAFOGO BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL,
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# INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF
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# THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF RODRIGO BOTAFOGO HAS BEEN ADVISED OF THE
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# POSSIBILITY OF SUCH DAMAGE.
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#
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# RODRIGO BOTAFOGO SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
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# THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE
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# SOFTWARE AND ACCOMPANYING DOCUMENTATION, IF ANY, PROVIDED HEREUNDER IS PROVIDED "AS IS".
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# RODRIGO BOTAFOGO HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS,
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# OR MODIFICATIONS.
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##########################################################################################
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#=========================================================================================
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# Proc methods
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#=========================================================================================
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class Proc
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def self.compose(f, g)
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lambda { |*args| f[g[*args]] }
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end
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def *(g)
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Proc.compose(self, g)
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end
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#------------------------------------------------------------------------------------
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# Builds a function that returns true
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# when 'f' returns false, and vice versa.
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#------------------------------------------------------------------------------------
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def self.complement f
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lambda {|*args| not f.call(*args) }
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end
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#------------------------------------------------------------------------------------
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#
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#------------------------------------------------------------------------------------
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def neg
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Proc.complement(self)
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end
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#------------------------------------------------------------------------------------
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# Builds a function which returns true
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# whenever _every_ function in 'predicates'
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# returns true.
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#------------------------------------------------------------------------------------
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def self.conjoin(*predicates)
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base = lambda {|*args| true }
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predicates.inject(base) do |built, pred|
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lambda do |*args|
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built.call(*args) && pred.call(*args)
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end
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end
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end
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#------------------------------------------------------------------------------------
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# Builds a function which returns true
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# whenever _any_ function in 'predicates'
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# returns true.
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#------------------------------------------------------------------------------------
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def self.disjoin(*predicates)
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base = lambda {|*args| false }
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predicates.inject(base) do |built, pred|
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lambda do |*args|
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built.call(*args) || pred.call(*args)
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end
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end
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end
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#------------------------------------------------------------------------------------
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# This method binds the 1st argument of a binary function to a scalar value,
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# effectively enabling a binary function to be called in a context intended for a
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# unary function.
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#------------------------------------------------------------------------------------
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def bind1st(val)
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lambda { |arg| self.call(val, arg) }
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end
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#------------------------------------------------------------------------------------
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# This method binds the 2nd argument of a binary function to a scalar value,
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# effectively enabling a binary function to be called in a context intended for a
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# unary function.
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#------------------------------------------------------------------------------------
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def bind2nd(val)
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+
lambda { |arg| self.call(arg,val) }
|
114
|
+
end
|
115
|
+
|
116
|
+
#------------------------------------------------------------------------------------
|
117
|
+
# This class verifies a condition and if true, returns the evaluation of a function,
|
118
|
+
# otherwise returns NaN.
|
119
|
+
#------------------------------------------------------------------------------------
|
120
|
+
|
121
|
+
def self.clipped(predicate, method)
|
122
|
+
lambda { |*args| predicate.call(*args)? method.call(*args) : Float::NAN }
|
123
|
+
end
|
124
|
+
|
125
|
+
#------------------------------------------------------------------------------------
|
126
|
+
# Returns a constant value
|
127
|
+
#------------------------------------------------------------------------------------
|
128
|
+
|
129
|
+
def self.constant(val)
|
130
|
+
lambda { |arg| return val }
|
131
|
+
end
|
132
|
+
|
133
|
+
#------------------------------------------------------------------------------------
|
134
|
+
# Always returns true
|
135
|
+
#------------------------------------------------------------------------------------
|
136
|
+
|
137
|
+
def self.everywhere
|
138
|
+
lambda { |arg| return true}
|
139
|
+
end
|
140
|
+
|
141
|
+
#------------------------------------------------------------------------------------
|
142
|
+
# Always returns false
|
143
|
+
#------------------------------------------------------------------------------------
|
144
|
+
|
145
|
+
def self.nowhere
|
146
|
+
lambda { |arg| return false}
|
147
|
+
end
|
148
|
+
|
149
|
+
#------------------------------------------------------------------------------------
|
150
|
+
# The identity function
|
151
|
+
#------------------------------------------------------------------------------------
|
152
|
+
|
153
|
+
def self.identity
|
154
|
+
lambda { |arg| return arg }
|
155
|
+
end
|
156
|
+
|
157
|
+
end # Proc
|
158
|
+
|
159
|
+
|
@@ -0,0 +1,78 @@
|
|
1
|
+
# -*- coding: utf-8 -*-
|
2
|
+
|
3
|
+
##########################################################################################
|
4
|
+
# Copyright © 2013 Rodrigo Botafogo. All Rights Reserved. Permission to use, copy, modify,
|
5
|
+
# and distribute this software and its documentation, without fee and without a signed
|
6
|
+
# licensing agreement, is hereby granted, provided that the above copyright notice, this
|
7
|
+
# paragraph and the following two paragraphs appear in all copies, modifications, and
|
8
|
+
# distributions.
|
9
|
+
#
|
10
|
+
# IN NO EVENT SHALL RODRIGO BOTAFOGO BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL,
|
11
|
+
# INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF
|
12
|
+
# THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF RODRIGO BOTAFOGO HAS BEEN ADVISED OF THE
|
13
|
+
# POSSIBILITY OF SUCH DAMAGE.
|
14
|
+
#
|
15
|
+
# RODRIGO BOTAFOGO SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
|
16
|
+
# THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE
|
17
|
+
# SOFTWARE AND ACCOMPANYING DOCUMENTATION, IF ANY, PROVIDED HEREUNDER IS PROVIDED "AS IS".
|
18
|
+
# RODRIGO BOTAFOGO HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS,
|
19
|
+
# OR MODIFICATIONS.
|
20
|
+
##########################################################################################
|
21
|
+
|
22
|
+
##########################################################################################
|
23
|
+
#
|
24
|
+
##########################################################################################
|
25
|
+
|
26
|
+
module RubyFunctions
|
27
|
+
|
28
|
+
def ruby_binary_function(long_name, proc)
|
29
|
+
[long_name, "RubyFunctions", proc, "*", "*", "*"]
|
30
|
+
end
|
31
|
+
|
32
|
+
def ruby_unary_function(long_name, proc)
|
33
|
+
[long_name, "RubyFunctions", proc, "*", "*", "*"]
|
34
|
+
end
|
35
|
+
|
36
|
+
end # RubyFunctions
|
37
|
+
|
38
|
+
##########################################################################################
|
39
|
+
#
|
40
|
+
##########################################################################################
|
41
|
+
|
42
|
+
module UserFunction
|
43
|
+
extend RubyFunctions
|
44
|
+
|
45
|
+
#---------------------------------------------------------------------------------------
|
46
|
+
# Creates a binary operator in the given class. For direct creation of operators
|
47
|
+
# directly by the user.
|
48
|
+
#---------------------------------------------------------------------------------------
|
49
|
+
|
50
|
+
def self.binary_operator(name, exec_type, func, where, force_type = nil,
|
51
|
+
pre_condition = nil, post_condition = nil)
|
52
|
+
|
53
|
+
function = ruby_binary_function("#{name}_user", func)
|
54
|
+
klass = Object.const_get("#{where.capitalize}MDArray")
|
55
|
+
klass.make_binary_op(name, exec_type, function, force_type, pre_condition, post_condition)
|
56
|
+
|
57
|
+
end
|
58
|
+
|
59
|
+
#---------------------------------------------------------------------------------------
|
60
|
+
# Creates a unary operator in the given class. For direct creation of operators
|
61
|
+
# directly by the user.
|
62
|
+
#---------------------------------------------------------------------------------------
|
63
|
+
|
64
|
+
def self.unary_operator(name, exec_type, func, where, force_type = nil,
|
65
|
+
pre_condition = nil, post_condition = nil)
|
66
|
+
|
67
|
+
function = ruby_unary_function("#{name}_user", func)
|
68
|
+
klass = Object.const_get("#{where.capitalize}MDArray")
|
69
|
+
klass.make_unary_op(name, exec_type, function, force_type, pre_condition, post_condition)
|
70
|
+
|
71
|
+
end
|
72
|
+
|
73
|
+
end # UserFunction
|
74
|
+
|
75
|
+
require_relative 'ruby_generic_functions'
|
76
|
+
require_relative 'ruby_numeric_functions'
|
77
|
+
require_relative 'ruby_math'
|
78
|
+
require_relative 'ruby_stats'
|