hquery-patient-api 1.0.4 → 1.1.0

data/app/assets/javascripts/socialhistory.js.coffee

@@ -7,8 +7,8 @@ this.hQuery ||= {}
 
 ###*
 
-The Social History Observation is used to define the patient's occupational, personal (e.g. lifestyle), 
-social, and environmental history and health risk factors, as well as administrative data such as 
+The Social History Observation is used to define the patient's occupational, personal (e.g. lifestyle),
+social, and environmental history and health risk factors, as well as administrative data such as
 marital status, race, ethnicity and religious affiliation. The types of conditions
 described have been constrained to the SNOMED CT code system using constrained code set, 2.16.840.1.113883.3.88.12.80.60:
 229819007   Tobacco use and exposure
@@ -22,19 +22,17 @@ described have been constrained to the SNOMED CT code system using constrained c
 105421008   Educational achievement
 
 note:  Social History is not part of the existing green c32.
-@exports Socialhistory as hQuery.Socialhistory 
+@exports Socialhistory as hQuery.Socialhistory
 @augments hQuery.CodedEntry
-###  
+###
 class hQuery.Socialhistory extends hQuery.CodedEntry
-  
+
   constructor: (@json) ->
     super(@json)
   
-       
+
   ###*
   Value returns the value of the result. This will return an object. The properties of this
   object are dependent on the type of result.
   ###
   value: -> @json['value']
-  
-   

data/hquery_patientapi.gemspec

@@ -4,11 +4,17 @@ Gem::Specification.new do |s|
   s.name = "hquery-patient-api"
   s.summary = "A javascript library abstraction for dealing with patients in hQuery map reduce functions"
   s.description = "A javascript library abstraction for dealing with patients in hQuery map reduce functions"
-  s.email = "talk@hquery.org"
+  s.email = "tacoma-list@lists.mitre.org"
   s.homepage = "http://github.com/hquery/patient_api"
-  s.authors = ["Marc Hadley", "Andy Gregorowicz", "Rob Dingwell", "Andre Quina"]
-  s.version = '1.0.4'
+  s.authors = ["The MITRE Corporation"]
+  s.version = '1.1.0'
 
   s.files = `git ls-files`.split("\n")
-end
 
+  s.add_dependency "sprockets", '2.2.2'
+  s.add_dependency "coffee-script", "~> 2.4"
+  s.add_dependency "uglifier", "~> 3.2"
+  s.add_dependency 'tilt', "~> 1.4"
+  s.add_dependency "libv8", "~> 3.16.14"
+  s.add_dependency "therubyracer", "~> 0.12"
+end

data/test/fixtures/patient/barry_berry.json

@@ -14,14 +14,8 @@
     "code": "1013",
     "code_system": "HL7"
   },
-  "race": {
-    "code": "2131-1",
-    "code_system": "CDC"
-  },
-  "ethnicity": {
-    "code": "2186-5",
-    "code_system": "CDC"
-  },
+  "race": "2131-1",
+  "ethnicity": "2186-5",
   "birthPlace": {
     "city": "Washington",
     "state": "DC"
@@ -452,7 +446,7 @@
       "codes": {
         "SNOMED-CT": [
           "273447005"
-        ]        
+        ]
       },
       "start_time": 1269762691,
       "end_time": 1269762693,
@@ -468,11 +462,37 @@
       "codes": {
         "SNOMED-CT": [
           "273447005"
-        ]        
+        ]
       },
       "start_time": 1269762691,
       "end_time": 1269762693,
       "anatomicalStructure" : {"code": "13648007", "code_system": "SNOMED-CT"}
     }
+  ],
+  "care_goals" : [
+    {
+      "codes": {
+        "SNOMED-CT": [
+          "273447005"
+        ]
+      },
+      "start_time": 1269762691,
+      "end_time": 1269762693,
+      "relatedTo": { "code": "414285001","code_system": "SNOMED-CT" },
+      "targetOutcome": {
+        "unit": "points",
+        "value": 132
+      }
+    },{
+      "codes": {
+        "SNOMED-CT": [
+          "273447005"
+        ]
+      },
+      "start_time": 1269762691,
+      "end_time": 1269762693,
+      "relatedTo": { "code": "414285001", "code_system": "SNOMED-CT" },
+      "targetOutcome": { "code": "414285002", "code_system": "SNOMED-CT" }
+    }
   ]
-}
+}

data/test/test_helper.rb

@@ -2,18 +2,15 @@ require 'tilt'
 require 'coffee_script'
 require 'sprockets'
 require 'execjs'
-
-require 'minitest/autorun'
-
 require 'bundler/setup'
 require 'test/unit'
-require 'turn'
+
 
 Tilt::CoffeeScriptTemplate.default_bare=true
 class QueryExecutor
   @@ctx = nil
-  
-  def self.ctx 
+
+  def self.ctx
     unless @@ctx
       @@ctx = Sprockets::Environment.new(File.expand_path("../../", __FILE__))
       @@ctx.append_path "app/assets/javascripts"
@@ -24,5 +21,5 @@ class QueryExecutor
   def self.patient_api_javascript
     self.ctx.find_asset('patient')
   end
-  
-end
+
+end

data/test/unit/patient_api_test.rb

@@ -1,9 +1,5 @@
 require File.expand_path("../../test_helper", __FILE__)
-if RUBY_PLATFORM=='java'
-  require 'rhino'
-else
-  require 'v8'
-end
+require 'v8'
 
 class PatientApiTest  < Test::Unit::TestCase
   def setup
@@ -12,21 +8,18 @@ class PatientApiTest  < Test::Unit::TestCase
     initialize_patient = 'var patient = new hQuery.Patient(barry);'
     date = Time.new(2010,1,1)
     initialize_date = "var sampleDate = new Date(#{date.to_i*1000});"
-    if RUBY_PLATFORM=='java'
-      @context = Rhino::Context.new
-    else
-      @context = V8::Context.new
-    end
+
+    @context = V8::Context.new
 
     @context.eval(patient_api + "\nvar barry = " + fixture_json + ";\n" + initialize_patient + "\n" + initialize_date)
   end
-  
+
   def test_utils
     @context.eval('var encounter = patient.encounters()[0]')
     assert_equal 2005, @context.eval('encounter.startDate().getFullYear()')
     @context.eval('encounter.setTimestamp(new Date(2010,1,1))')
     assert_equal 2010, @context.eval('encounter.startDate().getFullYear()')
-  end    
+  end
 
   def test_demographics
     assert_equal 'Barry', @context.eval('patient.given()')
@@ -51,7 +44,6 @@ class PatientApiTest  < Test::Unit::TestCase
     assert_equal 'Care', @context.eval('patient.provider().providerEntity().last()')
     assert_equal 'en', @context.eval('patient.languages()[0].type()[0].code()')
     assert_equal true, @context.eval('patient.expired()')
-    assert_equal false, @context.eval('patient.clinicalTrialParticipant()')
   end
 
   def test_encounters
@@ -100,7 +92,7 @@ class PatientApiTest  < Test::Unit::TestCase
     assert_equal '8480-6', @context.eval('patient.vitalSigns()[1].resultType()[0].code()')
     assert_equal 'BP taken sitting', @context.eval('patient.vitalSigns()[1].comment()')
   end
-  
+
   def test_results
     assert_equal 1, @context.eval('patient.results().length')
     assert_equal '104150001', @context.eval('patient.results()[0].type()[0].code()')
@@ -125,7 +117,7 @@ class PatientApiTest  < Test::Unit::TestCase
     assert_equal 1, @context.eval('patient.medications().length')
     assert_equal 24, @context.eval('patient.medications()[0].administrationTiming().period().value()')
     assert @context.eval('patient.medications()[0].administrationTiming().institutionSpecified()')
-    assert_equal 'tablet', @context.eval('patient.medications()[0].dose().unit()')
+    assert_equal 'tablet', @context.eval('patient.medications()[0].dose().units')
     assert_equal 'Multivitamin', @context.eval('patient.medications()[0].medicationInformation().freeTextProductName()')
     assert_equal 1, @context.eval('patient.medications().match({"RxNorm": ["89905"]}).length')
     assert_equal 'C38288', @context.eval('patient.medications()[0].route().code()')
@@ -137,7 +129,7 @@ class PatientApiTest  < Test::Unit::TestCase
     assert_equal 3, @context.eval('patient.medications()[0].cumulativeMedicationDuration()["scalar"]')
     assert_equal "195911009", @context.eval('patient.medications()[0].reason().code()')
   end
-  
+
   def test_immunizations
     assert_equal 3, @context.eval('patient.immunizations().length')
     assert_equal 2, @context.eval('patient.immunizations().withoutNegation().length')
@@ -162,7 +154,7 @@ class PatientApiTest  < Test::Unit::TestCase
     assert_equal 'MD', @context.eval('patient.immunizations()[1].performer().person().addresses()[0].state()')
     assert_equal '20899', @context.eval('patient.immunizations()[1].performer().person().addresses()[0].postalCode()')
   end
-  
+
   def test_allergies
     assert_equal 1, @context.eval('patient.allergies().length')
     assert_equal 'Carries Epipen',@context.eval('patient.allergies()[0].comment()')
@@ -176,17 +168,17 @@ class PatientApiTest  < Test::Unit::TestCase
     assert_equal 1269762693000, @context.eval('patient.allergies()[0].endDate().getTime()')
     assert @context.eval('patient.allergies()[0].isTimeRange()')
   end
-  
+
   def test_pregnancies
     assert_equal 1, @context.eval('patient.pregnancies().length')
     assert_equal 1, @context.eval('patient.pregnancies().match({"SNOMED-CT": ["77386006"]}).length')
   end
-  
+
   def test_socialhistory
     assert_equal 1, @context.eval('patient.socialHistories().length')
     assert_equal 1, @context.eval('patient.socialHistories().match({"SNOMED-CT": ["229819007"]}).length')
   end
-  
+
   def test_functional_status
     assert_equal 1, @context.eval('patient.functionalStatuses().length')
     assert_equal 'result', @context.eval('patient.functionalStatuses()[0].type()')
@@ -197,5 +189,15 @@ class PatientApiTest  < Test::Unit::TestCase
     assert_equal 1, @context.eval('patient.medicalEquipment().length')
     assert_equal '13648007', @context.eval('patient.medicalEquipment()[0].anatomicalStructure().code()')
   end
-  
-end
+
+  def test_care_goals
+    assert_equal 2, @context.eval('patient.careGoals().length')
+    assert_equal '414285001', @context.eval('patient.careGoals()[0].relatedTo().code()')
+    assert_equal 'SNOMED-CT', @context.eval('patient.careGoals()[0].relatedTo().codeSystemName()')
+    assert_equal 132, @context.eval('patient.careGoals()[0].targetOutcome().value()')
+    assert_equal 'points', @context.eval('patient.careGoals()[0].targetOutcome().unit()')
+    assert_equal '414285002', @context.eval('patient.careGoals()[1].targetOutcome().code()')
+    assert_equal 'SNOMED-CT', @context.eval('patient.careGoals()[1].targetOutcome().codeSystemName()')
+  end
+
+end

metadata

@@ -1,27 +1,108 @@
 --- !ruby/object:Gem::Specification
 name: hquery-patient-api
 version: !ruby/object:Gem::Version
-  version: 1.0.4
+  version: 1.1.0
 platform: ruby
 authors:
-- Marc Hadley
-- Andy Gregorowicz
-- Rob Dingwell
-- Andre Quina
+- The MITRE Corporation
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-03-25 00:00:00.000000000 Z
-dependencies: []
+date: 2017-11-13 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: sprockets
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '='
+      - !ruby/object:Gem::Version
+        version: 2.2.2
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '='
+      - !ruby/object:Gem::Version
+        version: 2.2.2
+- !ruby/object:Gem::Dependency
+  name: coffee-script
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '2.4'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '2.4'
+- !ruby/object:Gem::Dependency
+  name: uglifier
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.2'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.2'
+- !ruby/object:Gem::Dependency
+  name: tilt
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.4'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.4'
+- !ruby/object:Gem::Dependency
+  name: libv8
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 3.16.14
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 3.16.14
+- !ruby/object:Gem::Dependency
+  name: therubyracer
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.12'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.12'
 description: A javascript library abstraction for dealing with patients in hQuery
   map reduce functions
-email: talk@hquery.org
+email: tacoma-list@lists.mitre.org
 executables: []
 extensions: []
 extra_rdoc_files: []
 files:
-- .gitignore
-- .travis.yml
+- ".gitignore"
+- ".travis.yml"
 - Gemfile
 - Gemfile.lock
 - LICENSE
@@ -29,10 +110,14 @@ files:
 - Rakefile
 - VERSION
 - app/assets/javascripts/allergy.js.coffee
+- app/assets/javascripts/assessment.js.coffee
+- app/assets/javascripts/careexperience.js.coffee
 - app/assets/javascripts/caregoal.js.coffee
+- app/assets/javascripts/communication.js.coffee
 - app/assets/javascripts/condition.js.coffee
 - app/assets/javascripts/core.js.coffee
 - app/assets/javascripts/encounter.js.coffee
+- app/assets/javascripts/familyhistory.js.coffee
 - app/assets/javascripts/functionalstatus.js.coffee
 - app/assets/javascripts/immunization.js.coffee
 - app/assets/javascripts/languages.js.coffee
@@ -174,20 +259,19 @@ require_paths:
 - lib
 required_ruby_version: !ruby/object:Gem::Requirement
   requirements:
-  - - ! '>='
+  - - ">="
     - !ruby/object:Gem::Version
       version: '0'
 required_rubygems_version: !ruby/object:Gem::Requirement
   requirements:
-  - - ! '>='
+  - - ">="
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 2.2.2
+rubygems_version: 2.6.12
 signing_key: 
 specification_version: 4
 summary: A javascript library abstraction for dealing with patients in hQuery map
   reduce functions
 test_files: []
-has_rdoc: