hquery-patient-api 1.0.4 → 1.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +5 -13
- data/Gemfile +4 -17
- data/Gemfile.lock +36 -24
- data/Rakefile +8 -12
- data/app/assets/javascripts/allergy.js.coffee +12 -14
- data/app/assets/javascripts/assessment.js.coffee +21 -0
- data/app/assets/javascripts/careexperience.js.coffee +23 -0
- data/app/assets/javascripts/caregoal.js.coffee +18 -3
- data/app/assets/javascripts/communication.js.coffee +22 -0
- data/app/assets/javascripts/condition.js.coffee +28 -13
- data/app/assets/javascripts/core.js.coffee +30 -14
- data/app/assets/javascripts/encounter.js.coffee +37 -9
- data/app/assets/javascripts/familyhistory.js.coffee +26 -0
- data/app/assets/javascripts/functionalstatus.js.coffee +14 -5
- data/app/assets/javascripts/immunization.js.coffee +20 -15
- data/app/assets/javascripts/languages.js.coffee +3 -7
- data/app/assets/javascripts/medicalequipment.js.coffee +26 -3
- data/app/assets/javascripts/medication.js.coffee +58 -12
- data/app/assets/javascripts/patient.js.coffee +87 -38
- data/app/assets/javascripts/pregnancy.js.coffee +2 -3
- data/app/assets/javascripts/procedure.js.coffee +54 -6
- data/app/assets/javascripts/provider.js.coffee +9 -13
- data/app/assets/javascripts/result.js.coffee +21 -4
- data/app/assets/javascripts/socialhistory.js.coffee +6 -8
- data/hquery_patientapi.gemspec +10 -4
- data/test/fixtures/patient/barry_berry.json +31 -11
- data/test/test_helper.rb +5 -8
- data/test/unit/patient_api_test.rb +24 -22
- metadata +98 -14
checksums.yaml
CHANGED
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---
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metadata.gz:
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metadata.gz: 15289c54979a12c15e61172d0c4de64e3b48de57
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data.tar.gz: c32fae07a30e84a81a532bfa8c2ce9c6d6907b61
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SHA512:
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metadata.gz:
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data.tar.gz: !binary |-
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metadata.gz: 740f709cec2ec05c320b53aaae72ab51543739a02d7963a4e26ee9e7772c11008f7669e5175ccaa94011c27b23404b1e49b2eb6ad5f008900f148af93969ca0e
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data.tar.gz: 5baa93db647fef81863ae6ebdbeb04d88265f439e87d9d33424e6dc818e056d2d4262000a38a006a0a50a3b413fe7ac7f36f88dc46b7e9ebe1e807f546c19829
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data/Gemfile
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source 'https://rubygems.org'
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gemspec
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gem '
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gem 'uglifier'
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gem 'rake'
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gem 'tilt'
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group :test do
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gem 'minitest', '~> 4.0'
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group :development, :test do
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gem 'test-unit'
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gem 'turn', :require => false
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platforms :ruby do
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gem "libv8"
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gem "therubyracer", :require => 'v8'
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end
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platforms :jruby do
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gem "therubyrhino"
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end
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gem 'rake'
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end
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data/Gemfile.lock
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PATH
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remote: .
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specs:
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hquery-patient-api (1.1.0)
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coffee-script (~> 2.4)
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libv8 (~> 3.16.14)
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sprockets (= 2.2.2)
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therubyracer (~> 0.12)
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tilt (~> 1.4)
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uglifier (~> 3.2)
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GEM
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remote: https://rubygems.org/
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specs:
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ansi (1.
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coffee-script (2.
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ansi (1.5.0)
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coffee-script (2.4.1)
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coffee-script-source
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execjs
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coffee-script-source (1.
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execjs (
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multi_json (~> 1.0)
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coffee-script-source (1.12.2)
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execjs (2.7.0)
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hike (1.2.3)
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libv8 (3.
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libv8 (3.16.14.19)
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minitest (4.7.5)
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multi_json (1.
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multi_json (1.12.2)
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power_assert (0.2.6)
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rack (1.6.8)
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rake (12.2.1)
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ref (2.0.0)
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sprockets (2.2.2)
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hike (~> 1.2)
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multi_json (~> 1.0)
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rack (~> 1.0)
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tilt (~> 1.1, != 1.3.0)
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test-unit (3.1.5)
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power_assert
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therubyracer (0.12.2)
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libv8 (~> 3.16.14.0)
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ref
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tilt (1.4.1)
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turn (0.9.7)
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ansi
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minitest (~> 4)
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uglifier (3.2.0)
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execjs (>= 0.3.0, < 3)
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PLATFORMS
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ruby
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DEPENDENCIES
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libv8
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minitest (~> 4.0)
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hquery-patient-api!
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rake
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therubyracer
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therubyrhino
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tilt
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test-unit
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turn
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BUNDLED WITH
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1.15.4
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data/Rakefile
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task :default => [:test]
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desc "Run basic tests"
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Rake::TestTask.new(:
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t.libs << "test"
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Rake::TestTask.new(:test) do |t|
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t.libs << "test" << "lib"
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t.test_files = FileList['test/**/*_test.rb']
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t.verbose = true
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end
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task :test => [:test_unit] do
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end
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namespace :doc do
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desc "Generate JS from CoffeeScript"
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task :generate_js do
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ctx = Sprockets::Environment.new(File.expand_path("../", __FILE__))
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Tilt::CoffeeScriptTemplate.default_bare=true
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Tilt::CoffeeScriptTemplate.default_bare=true
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ctx.append_path "app/assets/javascripts"
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api = ctx.find_asset('patient')
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Dir.mkdir('tmp') unless Dir.exists?( 'tmp')
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File.open('tmp/patient.js', 'w+') do |js_file|
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js_file.write api
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end
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end
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desc "Generate docs for patient API"
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task :js => :generate_js do
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system 'java -jar ./doc/jsdoc-toolkit/jsrun.jar ./doc/jsdoc-toolkit/app/run.js -t=doc/jsdoc-toolkit/templates/jsdoc -a tmp/patient.js -d=doc/patient-api'
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end
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task :copydir do
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Dir.mkdir('patientapi') unless Dir.exists? ('patientapi')
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cp_r "doc/patient-api", "../query-composer/public/patientapi"
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end
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end
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@@ -6,25 +6,25 @@ this.hQuery ||= {}
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# =require core.coffee
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###*
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@class
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@class
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@augments hQuery.CodedEntry
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@exports Allergy as hQuery.Allergy
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###
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class hQuery.Allergy extends hQuery.CodedEntry
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constructor: (@json) ->
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super(@json)
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###*
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Food and substance allergies use the Unique Ingredient Identifier(UNII) from the FDA
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http://www.fda.gov/ForIndustry/DataStandards/StructuredProductLabeling/ucm162523.htm
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Allegies to a class of medication Shall contain a value descending from the NDF-RT concept types
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of Mechanism of Action - N0000000223, Physiologic Effect - N0000009802 or
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Chemical Structure - N0000000002. NUI will be used as the concept code.
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For more information, please see the Web Site
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Allegies to a class of medication Shall contain a value descending from the NDF-RT concept types
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of Mechanism of Action - N0000000223, Physiologic Effect - N0000009802 or
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Chemical Structure - N0000000002. NUI will be used as the concept code.
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For more information, please see the Web Site
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http://www.cancer.gov/cancertopics/terminologyresources/page5
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Allergies to a specific medication shall use RxNorm for the values.
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Allergies to a specific medication shall use RxNorm for the values.
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@returns {CodedValue}
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###
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product: -> this.type()
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adverseEventType: -> hQuery.createCodedValue @json['type']
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###*
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This indicates the reaction that may be caused by the product or agent.
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This indicates the reaction that may be caused by the product or agent.
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It is defined by 2.16.840.1.113883.3.88.12.3221.6.2 and are SNOMED-CT codes.
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420134006 Propensity to adverse reactions (disorder)
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418038007 Propensity to adverse reactions to substance (disorder)
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414285001 Food allergy (disorder)
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59037007 Drug intolerance (disorder)
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235719002 Food intolerance (disorder)
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@returns {CodedValue}
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@returns {CodedValue}
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reaction: -> hQuery.createCodedValue @json['reaction']
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371924009 Moderate to Severe
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24484000 Severe
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399166001 Fatal
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@returns {CodedValue}
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@returns {CodedValue}
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###
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severity: -> hQuery.createCodedValue @json['severity']
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@returns {String}
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###
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comment: -> @json['comment']
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###*
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@namespace scoping into the hquery namespace
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this.hQuery ||= {}
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# =require core.coffee
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###*
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This represents all care experience.
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@class
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@augments hQuery.CodedEntry
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@exports Assessment as hQuery.Assessment
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###
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class hQuery.Assessment extends hQuery.CodedEntry
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constructor: (@json) ->
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super(@json)
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###*
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@returns {CodedValue}
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###
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method: -> hQuery.createCodedValue @json['method']
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###*
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@namespace scoping into the hquery namespace
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this.hQuery ||= {}
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# =require core.coffee
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###*
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This represents all care experience.
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@class
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@augments hQuery.CodedEntry
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@exports CareExperience as hQuery.CareExperience
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###
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class hQuery.CareExperience extends hQuery.CodedEntry
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constructor: (@json) ->
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super(@json)
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###*
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Value returns the value of the result. This will return an object. The properties of this
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object are dependent on the type of result.
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###
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value: -> @json['value']
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The plan of care contains data defining prospective or intended orders, interventions, encounters, services, and procedures for the patient.
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@exports CareGoal as hQuery.CareGoal
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@exports CareGoal as hQuery.CareGoal
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@augments hQuery.CodedEntry
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class hQuery.CareGoal extends hQuery.CodedEntry
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@returns {CodedValue}
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###
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relatedTo: -> hQuery.createCodedValue @json['relatedTo']
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###*
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@returns {CodedValue}
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###
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targetOutcome: ->
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if @json['targetOutcome']?['unit']?
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new hQuery.Scalar @json['targetOutcome']
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else if @json['targetOutcome']?
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hQuery.createCodedValue @json['targetOutcome']
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###*
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# =require core.coffee
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###*
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This represents all communications.
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@class
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@augments hQuery.CodedEntry
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@exports Communication as hQuery.Communication
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###
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class hQuery.Communication extends hQuery.CodedEntry
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constructor: (@json) ->
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super(@json)
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###*
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@returns {CodedValue}
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###
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direction: -> new hQuery.createCodedValue @json['direction']
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This section is used to describe a patients problems/conditions. The types of conditions
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described have been constrained to the SNOMED CT Problem Type code set. An unbounded
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number of treating providers for the particular condition can be supplied.
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@exports Condition as hQuery.Condition
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@exports Condition as hQuery.Condition
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@augments hQuery.CodedEntry
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###
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###
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class hQuery.Condition extends hQuery.CodedEntry
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-
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+
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constructor: (@json) ->
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super(@json)
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-
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+
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###*
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@returns {Array, hQuery.Provider} an array of providers for the condition
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###
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providers: ->
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-
for provider in @json['treatingProviders']
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-
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+
for provider in @json['treatingProviders']
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+
new Provider provider
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###*
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Diagnosis Priority
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@@ -61,28 +61,43 @@ class hQuery.Condition extends hQuery.CodedEntry
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@returns {int}
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###
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ageAtOnset: -> @json['ageAtOnset']
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-
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-
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+
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65
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+
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###*
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cause of death
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@returns {hQuery.CauseOfDeath}
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###
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causeOfDeath: -> new hQuery.CauseOfDeath @json['causeOfDeath'] if @json['causeOfDeath']
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-
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+
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###*
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problem status
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@returns {hQuery.CodedValue}
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###
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problemStatus: -> hQuery.createCodedValue @json['problemStatus']
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-
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+
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###*
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comment
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@returns {String}
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###
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comment: -> @json['comment']
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-
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+
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###*
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This is a description of the level of the severity of the condition.
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-
@returns {CodedValue}
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86
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+
@returns {CodedValue}
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+
###
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+
severity: -> hQuery.createCodedValue @json['severity']
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+
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+
###*
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+
@returns {CodedValue}
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+
###
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93
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+
reaction: -> new hQuery.createCodedValue @json['reaction']
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+
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+
###*
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96
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+
@returns {CodedValue}
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97
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+
###
|
98
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+
laterality: -> hQuery.createCodedValue @json['laterality']
|
99
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+
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100
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+
###*
|
101
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+
@returns {CodedValue}
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87
102
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###
|
88
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-
|
103
|
+
anatomicalLocation: -> hQuery.createCodedValue @json['anatomical_location']
|
@@ -52,7 +52,7 @@ class hQuery.CodedValue
|
|
52
52
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@returns {String} the code system name
|
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###
|
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codeSystemName: -> @csn
|
55
|
-
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55
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+
|
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@normalize: (val) ->
|
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String(val).toLowerCase()
|
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58
|
|
@@ -171,11 +171,11 @@ class hQuery.Person
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|
171
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@returns {String} the last/family name of the person
|
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###
|
173
173
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last: -> @json['last']
|
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-
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174
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+
|
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175
|
###*
|
176
176
|
@returns {String} the display name of the person
|
177
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###
|
178
|
-
name: ->
|
178
|
+
name: ->
|
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179
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if @json['name']
|
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@json['name']
|
181
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else
|
@@ -190,7 +190,7 @@ class hQuery.Person
|
|
190
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|
for address in @json['addresses']
|
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|
list.push(new hQuery.Address(address))
|
192
192
|
list
|
193
|
-
|
193
|
+
|
194
194
|
###*
|
195
195
|
@returns {Array} an array of {@link hQuery.Telecom} objects associated with the person
|
196
196
|
###
|
@@ -219,17 +219,17 @@ class hQuery.Actor
|
|
219
219
|
###
|
220
220
|
class hQuery.Organization
|
221
221
|
constructor: (@json) ->
|
222
|
-
|
222
|
+
|
223
223
|
###*
|
224
224
|
@returns {String} the id for the organization
|
225
225
|
###
|
226
226
|
organizationId: -> @json['organizationId']
|
227
|
-
|
227
|
+
|
228
228
|
###*
|
229
229
|
@returns {String} the name of the organization
|
230
230
|
###
|
231
231
|
organizationName: -> @json['name']
|
232
|
-
|
232
|
+
|
233
233
|
###*
|
234
234
|
@returns {Array} an array of {@link hQuery.Address} objects associated with the organization
|
235
235
|
###
|
@@ -239,7 +239,7 @@ class hQuery.Organization
|
|
239
239
|
for address in @json['addresses']
|
240
240
|
list.push(new hQuery.Address(address))
|
241
241
|
list
|
242
|
-
|
242
|
+
|
243
243
|
###*
|
244
244
|
@returns {Array} an array of {@link hQuery.Telecom} objects associated with the organization
|
245
245
|
###
|
@@ -346,7 +346,7 @@ class hQuery.CodedEntry
|
|
346
346
|
# id of the entry from the source document if available
|
347
347
|
@source_id = @json['id']
|
348
348
|
@_freeTextType = @json['description']
|
349
|
-
|
349
|
+
|
350
350
|
###*
|
351
351
|
Adjust the start and end times of this event to the supplied timestamp
|
352
352
|
###
|
@@ -385,12 +385,12 @@ class hQuery.CodedEntry
|
|
385
385
|
isTimeRange: -> @_startDate? && @_endDate?
|
386
386
|
|
387
387
|
###*
|
388
|
-
Determines whether a coded entry contains sufficient information (code and at least
|
388
|
+
Determines whether a coded entry contains sufficient information (code and at least
|
389
389
|
one time stamp) to be usable
|
390
390
|
@returns {boolean}
|
391
391
|
###
|
392
392
|
isUsable: -> @_type.length>0 && (@_date || @_startDate || @_endDate)
|
393
|
-
|
393
|
+
|
394
394
|
###*
|
395
395
|
An Array of CodedValues which describe what kind of coded entry took place
|
396
396
|
@returns {Array}
|
@@ -441,7 +441,7 @@ class hQuery.CodedEntry
|
|
441
441
|
@returns {Boolean} whether the entry was negated
|
442
442
|
###
|
443
443
|
negationInd: -> @json['negationInd'] || false
|
444
|
-
|
444
|
+
|
445
445
|
###*
|
446
446
|
Returns the values of the result. This will return an array that contains
|
447
447
|
PhysicalQuantity or CodedValue objects depending on the result type.
|
@@ -469,7 +469,23 @@ class hQuery.CodedEntry
|
|
469
469
|
@returns {hQuery.CodedValue} Used to explain the rationale for a given entry.
|
470
470
|
###
|
471
471
|
reason: -> hQuery.createCodedValue @json['reason']
|
472
|
-
|
472
|
+
|
473
|
+
###*
|
474
|
+
@returns {CodedEntryList}
|
475
|
+
###
|
476
|
+
providerPreference: -> new hQuery.CodedEntryList @json['providerPreference']
|
477
|
+
|
478
|
+
|
479
|
+
###*
|
480
|
+
@returns {CodedEntryList}
|
481
|
+
###
|
482
|
+
patientPreference: -> new hQuery.CodedEntryList @json['patientPreference']
|
483
|
+
|
484
|
+
###*
|
485
|
+
The health record field is the location within an electronic record where the data should be found
|
486
|
+
@returns {CodedValue}
|
487
|
+
###
|
488
|
+
healthRecordField: -> hQuery.createCodedValue @json['health_record_field']
|
473
489
|
|
474
490
|
###*
|
475
491
|
@class Represents a list of hQuery.CodedEntry instances. Offers utility methods for matching
|
@@ -487,7 +503,7 @@ class hQuery.CodedEntryList extends Array
|
|
487
503
|
pushIfUsable: (entry) ->
|
488
504
|
if entry.isUsable()
|
489
505
|
this.push(entry)
|
490
|
-
|
506
|
+
|
491
507
|
###*
|
492
508
|
Return the number of entries that match the
|
493
509
|
supplied code set where those entries occur between the supplied time bounds
|