hquery-patient-api 1.0.4 → 1.1.0

checksums.yaml

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data/Gemfile

@@ -1,21 +1,8 @@
 source 'https://rubygems.org'
+gemspec
 
-gem 'sprockets', '2.2.2'
-gem 'coffee-script'
-gem 'uglifier'
-gem 'rake'
-gem 'tilt'
-
-group :test do
-  gem 'minitest', '~> 4.0'
+group :development, :test do
+  gem 'test-unit'
   gem 'turn', :require => false
-
-  platforms :ruby do
-    gem "libv8" 
-    gem "therubyracer", :require => 'v8'
-  end
-  
-  platforms :jruby do
-    gem "therubyrhino"
-  end
+  gem 'rake'
 end

data/Gemfile.lock

@@ -1,44 +1,56 @@
+PATH
+  remote: .
+  specs:
+    hquery-patient-api (1.1.0)
+      coffee-script (~> 2.4)
+      libv8 (~> 3.16.14)
+      sprockets (= 2.2.2)
+      therubyracer (~> 0.12)
+      tilt (~> 1.4)
+      uglifier (~> 3.2)
+
 GEM
   remote: https://rubygems.org/
   specs:
-    ansi (1.4.2)
-    coffee-script (2.2.0)
+    ansi (1.5.0)
+    coffee-script (2.4.1)
       coffee-script-source
       execjs
-    coffee-script-source (1.3.1)
-    execjs (1.3.0)
-      multi_json (~> 1.0)
+    coffee-script-source (1.12.2)
+    execjs (2.7.0)
     hike (1.2.3)
-    libv8 (3.3.10.4)
+    libv8 (3.16.14.19)
     minitest (4.7.5)
-    multi_json (1.3.2)
-    rack (1.5.2)
-    rake (0.9.2.2)
+    multi_json (1.12.2)
+    power_assert (0.2.6)
+    rack (1.6.8)
+    rake (12.2.1)
+    ref (2.0.0)
     sprockets (2.2.2)
       hike (~> 1.2)
       multi_json (~> 1.0)
       rack (~> 1.0)
       tilt (~> 1.1, != 1.3.0)
-    therubyracer (0.10.2)
-      libv8 (~> 3.3.10)
-    tilt (1.3.3)
-    turn (0.9.5)
+    test-unit (3.1.5)
+      power_assert
+    therubyracer (0.12.2)
+      libv8 (~> 3.16.14.0)
+      ref
+    tilt (1.4.1)
+    turn (0.9.7)
       ansi
-    uglifier (1.2.4)
-      execjs (>= 0.3.0)
-      multi_json (>= 1.0.2)
+      minitest (~> 4)
+    uglifier (3.2.0)
+      execjs (>= 0.3.0, < 3)
 
 PLATFORMS
   ruby
 
 DEPENDENCIES
-  coffee-script
-  libv8
-  minitest (~> 4.0)
+  hquery-patient-api!
   rake
-  sprockets (= 2.2.2)
-  therubyracer
-  therubyrhino
-  tilt
+  test-unit
   turn
-  uglifier
+
+BUNDLED WITH
+   1.15.4

data/Rakefile

@@ -7,39 +7,35 @@ require 'fileutils'
 task :default => [:test]
 
 desc "Run basic tests"
-Rake::TestTask.new(:test_unit) do |t|
-  t.libs << "test"
+Rake::TestTask.new(:test) do |t|
+  t.libs << "test" << "lib"
   t.test_files = FileList['test/**/*_test.rb']
   t.verbose = true
 end
 
-task :test => [:test_unit] do 
-
-end
-
 namespace :doc do
   desc "Generate JS from CoffeeScript"
   task :generate_js do
     ctx = Sprockets::Environment.new(File.expand_path("../", __FILE__))
-    Tilt::CoffeeScriptTemplate.default_bare=true 
+    Tilt::CoffeeScriptTemplate.default_bare=true
     ctx.append_path "app/assets/javascripts"
     api = ctx.find_asset('patient')
-    
+
     Dir.mkdir('tmp') unless Dir.exists?( 'tmp')
-    
+
     File.open('tmp/patient.js', 'w+') do |js_file|
       js_file.write api
     end
   end
-  
+
   desc "Generate docs for patient API"
   task :js => :generate_js do
     system 'java -jar ./doc/jsdoc-toolkit/jsrun.jar ./doc/jsdoc-toolkit/app/run.js -t=doc/jsdoc-toolkit/templates/jsdoc -a tmp/patient.js -d=doc/patient-api'
   end
-  
+
   task :copydir do
     Dir.mkdir('patientapi') unless Dir.exists? ('patientapi')
     cp_r "doc/patient-api", "../query-composer/public/patientapi"
   end
-    
+
 end

data/app/assets/javascripts/allergy.js.coffee

@@ -6,25 +6,25 @@ this.hQuery ||= {}
 # =require core.coffee
 
 ###*
-@class 
+@class
 @augments hQuery.CodedEntry
 @exports Allergy as hQuery.Allergy
 ###
 class hQuery.Allergy  extends hQuery.CodedEntry
   constructor: (@json) ->
     super(@json)
-    
+
   ###*
   Food and substance allergies use the Unique Ingredient Identifier(UNII) from the FDA
   http://www.fda.gov/ForIndustry/DataStandards/StructuredProductLabeling/ucm162523.htm
-  
-  Allegies to a class of medication Shall contain a value descending from the NDF-RT concept types 
-  of Mechanism of Action - N0000000223, Physiologic Effect - N0000009802 or 
-  Chemical Structure - N0000000002. NUI will be used as the concept code. 
-  For more information, please see the Web Site 
+
+  Allegies to a class of medication Shall contain a value descending from the NDF-RT concept types
+  of Mechanism of Action - N0000000223, Physiologic Effect - N0000009802 or
+  Chemical Structure - N0000000002. NUI will be used as the concept code.
+  For more information, please see the Web Site
   http://www.cancer.gov/cancertopics/terminologyresources/page5
-  
-  Allergies to a specific medication shall use RxNorm for the values.  
+
+  Allergies to a specific medication shall use RxNorm for the values.
   @returns {CodedValue}
   ###
   product: -> this.type()
@@ -42,7 +42,7 @@ class hQuery.Allergy  extends hQuery.CodedEntry
   adverseEventType: -> hQuery.createCodedValue @json['type']
 
   ###*
-  This indicates the reaction that may be caused by the product or agent.  
+  This indicates the reaction that may be caused by the product or agent.
    It is defined by 2.16.840.1.113883.3.88.12.3221.6.2 and are SNOMED-CT codes.
   420134006   Propensity to adverse reactions (disorder)
   418038007   Propensity to adverse reactions to substance (disorder)
@@ -53,7 +53,7 @@ class hQuery.Allergy  extends hQuery.CodedEntry
   414285001  Food allergy (disorder)
   59037007  Drug intolerance (disorder)
   235719002  Food intolerance (disorder)
-  @returns {CodedValue} 
+  @returns {CodedValue}
   ###
   reaction: -> hQuery.createCodedValue @json['reaction']
 
@@ -66,7 +66,7 @@ class hQuery.Allergy  extends hQuery.CodedEntry
     371924009  Moderate to Severe
     24484000    Severe
     399166001  Fatal
-  @returns {CodedValue} 
+  @returns {CodedValue}
   ###
   severity: -> hQuery.createCodedValue @json['severity']
 
@@ -75,5 +75,3 @@ class hQuery.Allergy  extends hQuery.CodedEntry
   @returns {String}
   ###
   comment: -> @json['comment']
-
-  

data/app/assets/javascripts/assessment.js.coffee

@@ -0,0 +1,21 @@
+###*
+@namespace scoping into the hquery namespace
+###
+this.hQuery ||= {}
+
+
+# =require core.coffee
+###*
+This represents all care experience.
+@class
+@augments hQuery.CodedEntry
+@exports Assessment as hQuery.Assessment
+###
+class hQuery.Assessment extends hQuery.CodedEntry
+  constructor: (@json) ->
+    super(@json)
+
+  ###*
+  @returns {CodedValue}
+  ###
+  method: -> hQuery.createCodedValue @json['method']

data/app/assets/javascripts/careexperience.js.coffee

@@ -0,0 +1,23 @@
+###*
+@namespace scoping into the hquery namespace
+###
+this.hQuery ||= {}
+
+
+# =require core.coffee
+###*
+This represents all care experience.
+@class
+@augments hQuery.CodedEntry
+@exports CareExperience as hQuery.CareExperience
+###
+class hQuery.CareExperience extends hQuery.CodedEntry
+  constructor: (@json) ->
+    super(@json)
+  
+
+  ###*
+  Value returns the value of the result. This will return an object. The properties of this
+  object are dependent on the type of result.
+  ###
+  value: -> @json['value']

data/app/assets/javascripts/caregoal.js.coffee

@@ -9,10 +9,25 @@ this.hQuery ||= {}
 
 The plan of care contains data defining prospective or intended orders, interventions, encounters, services, and procedures for the patient.
 
-@exports CareGoal as hQuery.CareGoal 
+@exports CareGoal as hQuery.CareGoal
 @augments hQuery.CodedEntry
-###  
+###
 class hQuery.CareGoal extends hQuery.CodedEntry
-  
+
   constructor: (@json) ->
     super(@json)
+
+  ###*
+  @returns {CodedValue}
+  ###
+  relatedTo: ->  hQuery.createCodedValue @json['relatedTo']
+
+
+  ###*
+  @returns {CodedValue}
+  ###
+  targetOutcome: ->
+    if @json['targetOutcome']?['unit']?
+      new hQuery.Scalar @json['targetOutcome']
+    else if @json['targetOutcome']?
+      hQuery.createCodedValue @json['targetOutcome']

data/app/assets/javascripts/communication.js.coffee

@@ -0,0 +1,22 @@
+###*
+@namespace scoping into the hquery namespace
+###
+this.hQuery ||= {}
+
+
+# =require core.coffee
+###*
+This represents all  communications.
+@class
+@augments hQuery.CodedEntry
+@exports Communication as hQuery.Communication
+###
+class hQuery.Communication extends hQuery.CodedEntry
+  constructor: (@json) ->
+    super(@json)
+
+  ###*
+  @returns {CodedValue}
+  ###
+  direction: ->  new hQuery.createCodedValue @json['direction']
+

data/app/assets/javascripts/condition.js.coffee

@@ -29,20 +29,20 @@ class hQuery.CauseOfDeath
 This section is used to describe a patients problems/conditions. The types of conditions
 described have been constrained to the SNOMED CT Problem Type code set. An unbounded
 number of treating providers for the particular condition can be supplied.
-@exports Condition as hQuery.Condition 
+@exports Condition as hQuery.Condition
 @augments hQuery.CodedEntry
-###  
+###
 class hQuery.Condition extends hQuery.CodedEntry
-  
+
   constructor: (@json) ->
     super(@json)
-  
+
   ###*
    @returns {Array, hQuery.Provider} an array of providers for the condition
   ###
   providers: ->
-    for  provider in @json['treatingProviders'] 
-       new Provider provider 
+    for  provider in @json['treatingProviders']
+      new Provider provider
 
   ###*
   Diagnosis Priority
@@ -61,28 +61,43 @@ class hQuery.Condition extends hQuery.CodedEntry
   @returns {int}
   ###
   ageAtOnset: -> @json['ageAtOnset']
-  
-  
+
+
   ###*
   cause of death
   @returns {hQuery.CauseOfDeath}
   ###
   causeOfDeath: -> new hQuery.CauseOfDeath @json['causeOfDeath'] if  @json['causeOfDeath']
-  
+
   ###*
   problem status
   @returns {hQuery.CodedValue}
   ###
   problemStatus: -> hQuery.createCodedValue  @json['problemStatus']
-  
+
   ###*
   comment
   @returns {String}
   ###
   comment: -> @json['comment']
-  
+
   ###*
   This is a description of the level of the severity of the condition.
-  @returns {CodedValue} 
+  @returns {CodedValue}
+  ###
+  severity: -> hQuery.createCodedValue @json['severity']
+
+  ###*
+  @returns {CodedValue}
+  ###
+  reaction: ->  new hQuery.createCodedValue @json['reaction']
+
+  ###*
+  @returns {CodedValue}
+  ###
+  laterality: -> hQuery.createCodedValue @json['laterality']
+
+  ###*
+  @returns {CodedValue}
   ###
-  severity: -> hQuery.createCodedValue @json['severity']
+  anatomicalLocation: -> hQuery.createCodedValue @json['anatomical_location']

data/app/assets/javascripts/core.js.coffee

@@ -52,7 +52,7 @@ class hQuery.CodedValue
   @returns {String} the code system name
   ###
   codeSystemName: -> @csn
-  
+
   @normalize: (val) ->
     String(val).toLowerCase()
 
@@ -171,11 +171,11 @@ class hQuery.Person
    @returns {String} the last/family name of the person
   ###
   last: -> @json['last']
-  
+
   ###*
    @returns {String} the display name of the person
   ###
-  name: -> 
+  name: ->
     if @json['name']
       @json['name']
     else
@@ -190,7 +190,7 @@ class hQuery.Person
       for address in @json['addresses']
         list.push(new hQuery.Address(address))
     list
-    
+
   ###*
   @returns {Array} an array of {@link hQuery.Telecom} objects associated with the person
   ###
@@ -219,17 +219,17 @@ class hQuery.Actor
 ###
 class hQuery.Organization
   constructor: (@json) ->
-  
+
   ###*
   @returns {String} the id for the organization
   ###
   organizationId: -> @json['organizationId']
-  
+
   ###*
   @returns {String} the name of the organization
   ###
   organizationName: -> @json['name']
-  
+
   ###*
   @returns {Array} an array of {@link hQuery.Address} objects associated with the organization
   ###
@@ -239,7 +239,7 @@ class hQuery.Organization
       for address in @json['addresses']
         list.push(new hQuery.Address(address))
     list
-    
+
   ###*
   @returns {Array} an array of {@link hQuery.Telecom} objects associated with the organization
   ###
@@ -346,7 +346,7 @@ class hQuery.CodedEntry
     # id of the entry from the source document if available
     @source_id = @json['id']
     @_freeTextType = @json['description']
-    
+
   ###*
   Adjust the start and end times of this event to the supplied timestamp
   ###
@@ -385,12 +385,12 @@ class hQuery.CodedEntry
   isTimeRange: -> @_startDate? && @_endDate?
 
   ###*
-  Determines whether a coded entry contains sufficient information (code and at least 
+  Determines whether a coded entry contains sufficient information (code and at least
   one time stamp) to be usable
   @returns {boolean}
   ###
   isUsable: -> @_type.length>0 && (@_date || @_startDate || @_endDate)
-  
+
   ###*
   An Array of CodedValues which describe what kind of coded entry took place
   @returns {Array}
@@ -441,7 +441,7 @@ class hQuery.CodedEntry
   @returns {Boolean} whether the entry was negated
   ###
   negationInd: -> @json['negationInd'] || false
-  
+
   ###*
   Returns the values of the result. This will return an array that contains
   PhysicalQuantity or CodedValue objects depending on the result type.
@@ -469,7 +469,23 @@ class hQuery.CodedEntry
   @returns {hQuery.CodedValue}   Used to explain the rationale for a given entry.
   ###
   reason: -> hQuery.createCodedValue @json['reason']
-  
+
+  ###*
+  @returns {CodedEntryList}
+  ###
+  providerPreference: ->  new hQuery.CodedEntryList @json['providerPreference']
+
+
+  ###*
+  @returns {CodedEntryList}
+  ###
+  patientPreference: ->  new hQuery.CodedEntryList @json['patientPreference']
+
+  ###*
+  The health record field is the location within an electronic record where the data should be found
+  @returns {CodedValue}
+  ###
+  healthRecordField: ->  hQuery.createCodedValue @json['health_record_field']
 
 ###*
 @class Represents a list of hQuery.CodedEntry instances. Offers utility methods for matching
@@ -487,7 +503,7 @@ class hQuery.CodedEntryList extends Array
   pushIfUsable: (entry) ->
     if entry.isUsable()
       this.push(entry)
-  
+
   ###*
   Return the number of entries that match the
   supplied code set where those entries occur between the supplied time bounds