galaaz 0.4.5 → 0.4.6

Sign up to get free protection for your applications and to get access to all the features.
Files changed (102) hide show
  1. checksums.yaml +4 -4
  2. data/README.md +696 -270
  3. data/Rakefile +9 -22
  4. data/bin/gknit +2 -217
  5. data/bin/gknit_old_r +236 -0
  6. data/bin/grun +5 -0
  7. data/blogs/dev/dev.Rmd +7 -0
  8. data/blogs/dev/dev.html +34 -26
  9. data/blogs/dev/dev.md +40 -25
  10. data/blogs/dev/dev_files/figure-html/bubble-1.png +0 -0
  11. data/blogs/dev/dev_files/figure-html/diverging_bar. +0 -0
  12. data/blogs/dev/dev_files/figure-html/diverging_bar.png +0 -0
  13. data/blogs/galaaz_ggplot/galaaz_ggplot.Rmd +4 -4
  14. data/blogs/galaaz_ggplot/galaaz_ggplot.html +251 -59
  15. data/blogs/galaaz_ggplot/galaaz_ggplot.log +640 -0
  16. data/blogs/galaaz_ggplot/galaaz_ggplot.md +199 -95
  17. data/blogs/galaaz_ggplot/galaaz_ggplot.tex +45 -228
  18. data/blogs/galaaz_ggplot/midwest.png +0 -0
  19. data/blogs/galaaz_ggplot/scatter_plot.png +0 -0
  20. data/blogs/gknit/gknit.Rmd +271 -148
  21. data/blogs/manual/manual.Rmd +212 -0
  22. data/blogs/manual/manual.html +1832 -0
  23. data/blogs/manual/manual.md +751 -0
  24. data/blogs/manual/manual_files/figure-html/diverging_bar.png +0 -0
  25. data/blogs/ruby_plot/ruby_plot.Rmd +5 -69
  26. data/blogs/ruby_plot/ruby_plot.html +195 -236
  27. data/blogs/ruby_plot/ruby_plot.md +1 -261
  28. data/blogs/ruby_plot/ruby_plot_files/figure-html/dose_len.svg +38 -38
  29. data/examples/sthda_ggplot/two_variables_disc_cont/geom_dotplot.rb +5 -5
  30. data/examples/sthda_ggplot/two_variables_disc_cont/geom_jitter.rb +1 -0
  31. data/examples/sthda_ggplot/two_variables_disc_cont/geom_violin.rb +3 -7
  32. data/examples/sthda_ggplot/two_variables_error/geom_crossbar.rb +3 -1
  33. data/lib/R_interface/r.rb +12 -9
  34. data/lib/R_interface/r_methods.rb +2 -2
  35. data/lib/R_interface/rbinary_operators.rb +2 -20
  36. data/lib/R_interface/rdata_frame.rb +56 -9
  37. data/lib/R_interface/rdevices.R +0 -12
  38. data/lib/R_interface/rexpression.rb +0 -97
  39. data/lib/R_interface/rindexed_object.rb +12 -3
  40. data/lib/R_interface/rlanguage.rb +1 -1
  41. data/lib/R_interface/rlist.rb +29 -4
  42. data/lib/R_interface/rlogical_operators.rb +50 -0
  43. data/lib/R_interface/rmatrix.rb +7 -1
  44. data/lib/R_interface/robject.rb +29 -15
  45. data/lib/R_interface/rsupport.rb +74 -58
  46. data/lib/R_interface/rsymbol.rb +2 -1
  47. data/lib/R_interface/ruby_extensions.rb +11 -2
  48. data/lib/R_interface/rvector.rb +26 -11
  49. data/lib/gknit.rb +2 -0
  50. data/lib/gknit/include_engine.rb +57 -0
  51. data/lib/gknit/knitr_engine.rb +596 -50
  52. data/lib/gknit/rb_engine.rb +56 -0
  53. data/lib/gknit/ruby_engine.rb +13 -36
  54. data/lib/util/exec_ruby.rb +132 -21
  55. data/lib/util/inline_file.rb +9 -7
  56. data/specs/all.rb +5 -0
  57. data/specs/figures/bg.jpeg +0 -0
  58. data/specs/figures/bg.png +0 -0
  59. data/specs/figures/bg.svg +57 -0
  60. data/specs/figures/no_args.jpeg +0 -0
  61. data/specs/figures/no_args.png +0 -0
  62. data/specs/figures/no_args.svg +57 -0
  63. data/specs/figures/width_height.jpeg +0 -0
  64. data/specs/figures/width_height.png +0 -0
  65. data/specs/figures/width_height_units1.jpeg +0 -0
  66. data/specs/figures/width_height_units1.png +0 -0
  67. data/specs/figures/width_height_units2.jpeg +0 -0
  68. data/specs/figures/width_height_units2.png +0 -0
  69. data/specs/r_dataframe.spec.rb +29 -27
  70. data/specs/r_devices.spec.rb +347 -0
  71. data/specs/r_eval.spec.rb +10 -3
  72. data/specs/r_formula.spec.rb +2 -2
  73. data/specs/r_language.spec.rb +112 -0
  74. data/specs/r_list.spec.rb +174 -14
  75. data/specs/r_list_apply.spec.rb +17 -10
  76. data/specs/r_matrix.spec.rb +3 -3
  77. data/specs/r_vector_operators.spec.rb +13 -7
  78. data/specs/tmp.rb +42 -12
  79. data/version.rb +1 -1
  80. metadata +28 -24
  81. data/bin/gknit2 +0 -14
  82. data/bin/prepareR.rb +0 -3
  83. data/bin/tmp.py +0 -51
  84. data/blogs/gknit/gknit.html +0 -528
  85. data/blogs/gknit/gknit.md +0 -628
  86. data/blogs/gknit/gknit.pdf +0 -0
  87. data/blogs/gknit/gknit.tex +0 -745
  88. data/blogs/gknit/gknit_files/figure-html/bubble-1.png +0 -0
  89. data/blogs/gknit/gknit_files/figure-html/diverging_bar.png +0 -0
  90. data/blogs/ruby_plot/figures/dose_len.png +0 -0
  91. data/blogs/ruby_plot/figures/facet_by_delivery.png +0 -0
  92. data/blogs/ruby_plot/figures/facet_by_dose.png +0 -0
  93. data/blogs/ruby_plot/figures/facets_by_delivery_color.png +0 -0
  94. data/blogs/ruby_plot/figures/facets_by_delivery_color2.png +0 -0
  95. data/blogs/ruby_plot/figures/facets_with_decorations.png +0 -0
  96. data/blogs/ruby_plot/figures/facets_with_jitter.png +0 -0
  97. data/blogs/ruby_plot/figures/facets_with_points.png +0 -0
  98. data/blogs/ruby_plot/figures/final_box_plot.png +0 -0
  99. data/blogs/ruby_plot/figures/final_violin_plot.png +0 -0
  100. data/blogs/ruby_plot/figures/violin_with_jitter.png +0 -0
  101. data/lib/R/eng_ruby.R +0 -62
  102. data/lib/R_interface/rdevices.rb +0 -225
@@ -0,0 +1,640 @@
1
+ This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex 2018.11.27) 8 FEB 2019 14:37
2
+ entering extended mode
3
+ restricted \write18 enabled.
4
+ %&-line parsing enabled.
5
+ **galaaz_ggplot.tex
6
+ (./galaaz_ggplot.tex
7
+ LaTeX2e <2018-04-01> patch level 5
8
+ (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
9
+ Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
10
+ (/usr/share/texlive/texmf-dist/tex/latex/base/size11.clo
11
+ File: size11.clo 2014/09/29 v1.4h Standard LaTeX file (size option)
12
+ )
13
+ \c@part=\count80
14
+ \c@section=\count81
15
+ \c@subsection=\count82
16
+ \c@subsubsection=\count83
17
+ \c@paragraph=\count84
18
+ \c@subparagraph=\count85
19
+ \c@figure=\count86
20
+ \c@table=\count87
21
+ \abovecaptionskip=\skip41
22
+ \belowcaptionskip=\skip42
23
+ \bibindent=\dimen102
24
+ ) (/usr/share/texmf/tex/latex/lm/lmodern.sty
25
+ Package: lmodern 2009/10/30 v1.6 Latin Modern Fonts
26
+ LaTeX Font Info: Overwriting symbol font `operators' in version `normal'
27
+ (Font) OT1/cmr/m/n --> OT1/lmr/m/n on input line 22.
28
+ LaTeX Font Info: Overwriting symbol font `letters' in version `normal'
29
+ (Font) OML/cmm/m/it --> OML/lmm/m/it on input line 23.
30
+ LaTeX Font Info: Overwriting symbol font `symbols' in version `normal'
31
+ (Font) OMS/cmsy/m/n --> OMS/lmsy/m/n on input line 24.
32
+ LaTeX Font Info: Overwriting symbol font `largesymbols' in version `normal'
33
+ (Font) OMX/cmex/m/n --> OMX/lmex/m/n on input line 25.
34
+ LaTeX Font Info: Overwriting symbol font `operators' in version `bold'
35
+ (Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 26.
36
+ LaTeX Font Info: Overwriting symbol font `letters' in version `bold'
37
+ (Font) OML/cmm/b/it --> OML/lmm/b/it on input line 27.
38
+ LaTeX Font Info: Overwriting symbol font `symbols' in version `bold'
39
+ (Font) OMS/cmsy/b/n --> OMS/lmsy/b/n on input line 28.
40
+ LaTeX Font Info: Overwriting symbol font `largesymbols' in version `bold'
41
+ (Font) OMX/cmex/m/n --> OMX/lmex/m/n on input line 29.
42
+ LaTeX Font Info: Overwriting math alphabet `\mathbf' in version `normal'
43
+ (Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 31.
44
+ LaTeX Font Info: Overwriting math alphabet `\mathsf' in version `normal'
45
+ (Font) OT1/cmss/m/n --> OT1/lmss/m/n on input line 32.
46
+ LaTeX Font Info: Overwriting math alphabet `\mathit' in version `normal'
47
+ (Font) OT1/cmr/m/it --> OT1/lmr/m/it on input line 33.
48
+ LaTeX Font Info: Overwriting math alphabet `\mathtt' in version `normal'
49
+ (Font) OT1/cmtt/m/n --> OT1/lmtt/m/n on input line 34.
50
+ LaTeX Font Info: Overwriting math alphabet `\mathbf' in version `bold'
51
+ (Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 35.
52
+ LaTeX Font Info: Overwriting math alphabet `\mathsf' in version `bold'
53
+ (Font) OT1/cmss/bx/n --> OT1/lmss/bx/n on input line 36.
54
+ LaTeX Font Info: Overwriting math alphabet `\mathit' in version `bold'
55
+ (Font) OT1/cmr/bx/it --> OT1/lmr/bx/it on input line 37.
56
+ LaTeX Font Info: Overwriting math alphabet `\mathtt' in version `bold'
57
+ (Font) OT1/cmtt/m/n --> OT1/lmtt/m/n on input line 38.
58
+ ) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
59
+ Package: amssymb 2013/01/14 v3.01 AMS font symbols
60
+ (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty
61
+ Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support
62
+ \@emptytoks=\toks14
63
+ \symAMSa=\mathgroup4
64
+ \symAMSb=\mathgroup5
65
+ LaTeX Font Info: Overwriting math alphabet `\mathfrak' in version `bold'
66
+ (Font) U/euf/m/n --> U/euf/b/n on input line 106.
67
+ )) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
68
+ Package: amsmath 2017/09/02 v2.17a AMS math features
69
+ \@mathmargin=\skip43
70
+ For additional information on amsmath, use the `?' option.
71
+ (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
72
+ Package: amstext 2000/06/29 v2.01 AMS text
73
+ (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty
74
+ File: amsgen.sty 1999/11/30 v2.0 generic functions
75
+ \@emptytoks=\toks15
76
+ \ex@=\dimen103
77
+ )) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty
78
+ Package: amsbsy 1999/11/29 v1.2d Bold Symbols
79
+ \pmbraise@=\dimen104
80
+ ) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty
81
+ Package: amsopn 2016/03/08 v2.02 operator names
82
+ )
83
+ \inf@bad=\count88
84
+ LaTeX Info: Redefining \frac on input line 213.
85
+ \uproot@=\count89
86
+ \leftroot@=\count90
87
+ LaTeX Info: Redefining \overline on input line 375.
88
+ \classnum@=\count91
89
+ \DOTSCASE@=\count92
90
+ LaTeX Info: Redefining \ldots on input line 472.
91
+ LaTeX Info: Redefining \dots on input line 475.
92
+ LaTeX Info: Redefining \cdots on input line 596.
93
+ \Mathstrutbox@=\box26
94
+ \strutbox@=\box27
95
+ \big@size=\dimen105
96
+ LaTeX Font Info: Redeclaring font encoding OML on input line 712.
97
+ LaTeX Font Info: Redeclaring font encoding OMS on input line 713.
98
+ \macc@depth=\count93
99
+ \c@MaxMatrixCols=\count94
100
+ \dotsspace@=\muskip10
101
+ \c@parentequation=\count95
102
+ \dspbrk@lvl=\count96
103
+ \tag@help=\toks16
104
+ \row@=\count97
105
+ \column@=\count98
106
+ \maxfields@=\count99
107
+ \andhelp@=\toks17
108
+ \eqnshift@=\dimen106
109
+ \alignsep@=\dimen107
110
+ \tagshift@=\dimen108
111
+ \tagwidth@=\dimen109
112
+ \totwidth@=\dimen110
113
+ \lineht@=\dimen111
114
+ \@envbody=\toks18
115
+ \multlinegap=\skip44
116
+ \multlinetaggap=\skip45
117
+ \mathdisplay@stack=\toks19
118
+ LaTeX Info: Redefining \[ on input line 2817.
119
+ LaTeX Info: Redefining \] on input line 2818.
120
+ ) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty
121
+ Package: ifxetex 2010/09/12 v0.6 Provides ifxetex conditional
122
+ ) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty
123
+ Package: ifluatex 2016/05/16 v1.4 Provides the ifluatex switch (HO)
124
+ Package ifluatex Info: LuaTeX not detected.
125
+ ) (/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty
126
+ Package: fixltx2e 2016/12/29 v2.1a fixes to LaTeX (obsolete)
127
+ Applying: [2015/01/01] Old fixltx2e package on input line 46.
128
+
129
+ Package fixltx2e Warning: fixltx2e is not required with releases after 2015
130
+ (fixltx2e) All fixes are now in the LaTeX kernel.
131
+ (fixltx2e) See the latexrelease package for details.
132
+
133
+ Already applied: [0000/00/00] Old fixltx2e package on input line 53.
134
+ ) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
135
+ Package: fontenc 2017/04/05 v2.0i Standard LaTeX package
136
+ (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def
137
+ File: t1enc.def 2017/04/05 v2.0i Standard LaTeX file
138
+ LaTeX Font Info: Redeclaring font encoding T1 on input line 48.
139
+ )) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
140
+ Package: inputenc 2018/04/06 v1.3b Input encoding file
141
+ \inpenc@prehook=\toks20
142
+ \inpenc@posthook=\toks21
143
+ ) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty
144
+ Package: upquote 2012/04/19 v1.3 upright-quote and grave-accent glyphs in verba
145
+ tim
146
+ (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
147
+ Package: textcomp 2017/04/05 v2.0i Standard LaTeX package
148
+ Package textcomp Info: Sub-encoding information:
149
+ (textcomp) 5 = only ISO-Adobe without \textcurrency
150
+ (textcomp) 4 = 5 + \texteuro
151
+ (textcomp) 3 = 4 + \textohm
152
+ (textcomp) 2 = 3 + \textestimated + \textcurrency
153
+ (textcomp) 1 = TS1 - \textcircled - \t
154
+ (textcomp) 0 = TS1 (full)
155
+ (textcomp) Font families with sub-encoding setting implement
156
+ (textcomp) only a restricted character set as indicated.
157
+ (textcomp) Family '?' is the default used for unknown fonts.
158
+ (textcomp) See the documentation for details.
159
+ Package textcomp Info: Setting ? sub-encoding to TS1/1 on input line 79.
160
+ (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
161
+ File: ts1enc.def 2001/06/05 v3.0e (jk/car/fm) Standard LaTeX file
162
+ Now handling font encoding TS1 ...
163
+ ... processing UTF-8 mapping file for font encoding TS1
164
+ (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu
165
+ File: ts1enc.dfu 2018/04/05 v1.2c UTF-8 support for inputenc
166
+ defining Unicode char U+00A2 (decimal 162)
167
+ defining Unicode char U+00A3 (decimal 163)
168
+ defining Unicode char U+00A4 (decimal 164)
169
+ defining Unicode char U+00A5 (decimal 165)
170
+ defining Unicode char U+00A6 (decimal 166)
171
+ defining Unicode char U+00A7 (decimal 167)
172
+ defining Unicode char U+00A8 (decimal 168)
173
+ defining Unicode char U+00A9 (decimal 169)
174
+ defining Unicode char U+00AA (decimal 170)
175
+ defining Unicode char U+00AC (decimal 172)
176
+ defining Unicode char U+00AE (decimal 174)
177
+ defining Unicode char U+00AF (decimal 175)
178
+ defining Unicode char U+00B0 (decimal 176)
179
+ defining Unicode char U+00B1 (decimal 177)
180
+ defining Unicode char U+00B2 (decimal 178)
181
+ defining Unicode char U+00B3 (decimal 179)
182
+ defining Unicode char U+00B4 (decimal 180)
183
+ defining Unicode char U+00B5 (decimal 181)
184
+ defining Unicode char U+00B6 (decimal 182)
185
+ defining Unicode char U+00B7 (decimal 183)
186
+ defining Unicode char U+00B9 (decimal 185)
187
+ defining Unicode char U+00BA (decimal 186)
188
+ defining Unicode char U+00BC (decimal 188)
189
+ defining Unicode char U+00BD (decimal 189)
190
+ defining Unicode char U+00BE (decimal 190)
191
+ defining Unicode char U+00D7 (decimal 215)
192
+ defining Unicode char U+00F7 (decimal 247)
193
+ defining Unicode char U+0192 (decimal 402)
194
+ defining Unicode char U+02C7 (decimal 711)
195
+ defining Unicode char U+02D8 (decimal 728)
196
+ defining Unicode char U+02DD (decimal 733)
197
+ defining Unicode char U+0E3F (decimal 3647)
198
+ defining Unicode char U+2016 (decimal 8214)
199
+ defining Unicode char U+2020 (decimal 8224)
200
+ defining Unicode char U+2021 (decimal 8225)
201
+ defining Unicode char U+2022 (decimal 8226)
202
+ defining Unicode char U+2030 (decimal 8240)
203
+ defining Unicode char U+2031 (decimal 8241)
204
+ defining Unicode char U+203B (decimal 8251)
205
+ defining Unicode char U+203D (decimal 8253)
206
+ defining Unicode char U+2044 (decimal 8260)
207
+ defining Unicode char U+204E (decimal 8270)
208
+ defining Unicode char U+2052 (decimal 8274)
209
+ defining Unicode char U+20A1 (decimal 8353)
210
+ defining Unicode char U+20A4 (decimal 8356)
211
+ defining Unicode char U+20A6 (decimal 8358)
212
+ defining Unicode char U+20A9 (decimal 8361)
213
+ defining Unicode char U+20AB (decimal 8363)
214
+ defining Unicode char U+20AC (decimal 8364)
215
+ defining Unicode char U+20B1 (decimal 8369)
216
+ defining Unicode char U+2103 (decimal 8451)
217
+ defining Unicode char U+2116 (decimal 8470)
218
+ defining Unicode char U+2117 (decimal 8471)
219
+ defining Unicode char U+211E (decimal 8478)
220
+ defining Unicode char U+2120 (decimal 8480)
221
+ defining Unicode char U+2122 (decimal 8482)
222
+ defining Unicode char U+2126 (decimal 8486)
223
+ defining Unicode char U+2127 (decimal 8487)
224
+ defining Unicode char U+212E (decimal 8494)
225
+ defining Unicode char U+2190 (decimal 8592)
226
+ defining Unicode char U+2191 (decimal 8593)
227
+ defining Unicode char U+2192 (decimal 8594)
228
+ defining Unicode char U+2193 (decimal 8595)
229
+ defining Unicode char U+2329 (decimal 9001)
230
+ defining Unicode char U+232A (decimal 9002)
231
+ defining Unicode char U+2422 (decimal 9250)
232
+ defining Unicode char U+25E6 (decimal 9702)
233
+ defining Unicode char U+25EF (decimal 9711)
234
+ defining Unicode char U+266A (decimal 9834)
235
+ defining Unicode char U+FEFF (decimal 65279)
236
+ ))
237
+ LaTeX Info: Redefining \oldstylenums on input line 334.
238
+ Package textcomp Info: Setting cmr sub-encoding to TS1/0 on input line 349.
239
+ Package textcomp Info: Setting cmss sub-encoding to TS1/0 on input line 350.
240
+ Package textcomp Info: Setting cmtt sub-encoding to TS1/0 on input line 351.
241
+ Package textcomp Info: Setting cmvtt sub-encoding to TS1/0 on input line 352.
242
+ Package textcomp Info: Setting cmbr sub-encoding to TS1/0 on input line 353.
243
+ Package textcomp Info: Setting cmtl sub-encoding to TS1/0 on input line 354.
244
+ Package textcomp Info: Setting ccr sub-encoding to TS1/0 on input line 355.
245
+ Package textcomp Info: Setting ptm sub-encoding to TS1/4 on input line 356.
246
+ Package textcomp Info: Setting pcr sub-encoding to TS1/4 on input line 357.
247
+ Package textcomp Info: Setting phv sub-encoding to TS1/4 on input line 358.
248
+ Package textcomp Info: Setting ppl sub-encoding to TS1/3 on input line 359.
249
+ Package textcomp Info: Setting pag sub-encoding to TS1/4 on input line 360.
250
+ Package textcomp Info: Setting pbk sub-encoding to TS1/4 on input line 361.
251
+ Package textcomp Info: Setting pnc sub-encoding to TS1/4 on input line 362.
252
+ Package textcomp Info: Setting pzc sub-encoding to TS1/4 on input line 363.
253
+ Package textcomp Info: Setting bch sub-encoding to TS1/4 on input line 364.
254
+ Package textcomp Info: Setting put sub-encoding to TS1/5 on input line 365.
255
+ Package textcomp Info: Setting uag sub-encoding to TS1/5 on input line 366.
256
+ Package textcomp Info: Setting ugq sub-encoding to TS1/5 on input line 367.
257
+ Package textcomp Info: Setting ul8 sub-encoding to TS1/4 on input line 368.
258
+ Package textcomp Info: Setting ul9 sub-encoding to TS1/4 on input line 369.
259
+ Package textcomp Info: Setting augie sub-encoding to TS1/5 on input line 370.
260
+ Package textcomp Info: Setting dayrom sub-encoding to TS1/3 on input line 371.
261
+ Package textcomp Info: Setting dayroms sub-encoding to TS1/3 on input line 372.
262
+
263
+ Package textcomp Info: Setting pxr sub-encoding to TS1/0 on input line 373.
264
+ Package textcomp Info: Setting pxss sub-encoding to TS1/0 on input line 374.
265
+ Package textcomp Info: Setting pxtt sub-encoding to TS1/0 on input line 375.
266
+ Package textcomp Info: Setting txr sub-encoding to TS1/0 on input line 376.
267
+ Package textcomp Info: Setting txss sub-encoding to TS1/0 on input line 377.
268
+ Package textcomp Info: Setting txtt sub-encoding to TS1/0 on input line 378.
269
+ Package textcomp Info: Setting lmr sub-encoding to TS1/0 on input line 379.
270
+ Package textcomp Info: Setting lmdh sub-encoding to TS1/0 on input line 380.
271
+ Package textcomp Info: Setting lmss sub-encoding to TS1/0 on input line 381.
272
+ Package textcomp Info: Setting lmssq sub-encoding to TS1/0 on input line 382.
273
+ Package textcomp Info: Setting lmvtt sub-encoding to TS1/0 on input line 383.
274
+ Package textcomp Info: Setting lmtt sub-encoding to TS1/0 on input line 384.
275
+ Package textcomp Info: Setting qhv sub-encoding to TS1/0 on input line 385.
276
+ Package textcomp Info: Setting qag sub-encoding to TS1/0 on input line 386.
277
+ Package textcomp Info: Setting qbk sub-encoding to TS1/0 on input line 387.
278
+ Package textcomp Info: Setting qcr sub-encoding to TS1/0 on input line 388.
279
+ Package textcomp Info: Setting qcs sub-encoding to TS1/0 on input line 389.
280
+ Package textcomp Info: Setting qpl sub-encoding to TS1/0 on input line 390.
281
+ Package textcomp Info: Setting qtm sub-encoding to TS1/0 on input line 391.
282
+ Package textcomp Info: Setting qzc sub-encoding to TS1/0 on input line 392.
283
+ Package textcomp Info: Setting qhvc sub-encoding to TS1/0 on input line 393.
284
+ Package textcomp Info: Setting futs sub-encoding to TS1/4 on input line 394.
285
+ Package textcomp Info: Setting futx sub-encoding to TS1/4 on input line 395.
286
+ Package textcomp Info: Setting futj sub-encoding to TS1/4 on input line 396.
287
+ Package textcomp Info: Setting hlh sub-encoding to TS1/3 on input line 397.
288
+ Package textcomp Info: Setting hls sub-encoding to TS1/3 on input line 398.
289
+ Package textcomp Info: Setting hlst sub-encoding to TS1/3 on input line 399.
290
+ Package textcomp Info: Setting hlct sub-encoding to TS1/5 on input line 400.
291
+ Package textcomp Info: Setting hlx sub-encoding to TS1/5 on input line 401.
292
+ Package textcomp Info: Setting hlce sub-encoding to TS1/5 on input line 402.
293
+ Package textcomp Info: Setting hlcn sub-encoding to TS1/5 on input line 403.
294
+ Package textcomp Info: Setting hlcw sub-encoding to TS1/5 on input line 404.
295
+ Package textcomp Info: Setting hlcf sub-encoding to TS1/5 on input line 405.
296
+ Package textcomp Info: Setting pplx sub-encoding to TS1/3 on input line 406.
297
+ Package textcomp Info: Setting pplj sub-encoding to TS1/3 on input line 407.
298
+ Package textcomp Info: Setting ptmx sub-encoding to TS1/4 on input line 408.
299
+ Package textcomp Info: Setting ptmj sub-encoding to TS1/4 on input line 409.
300
+ )) (/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype.sty
301
+ Package: microtype 2018/01/14 v2.7a Micro-typographical refinements (RS)
302
+ (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty
303
+ Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
304
+ \KV@toks@=\toks22
305
+ )
306
+ \MT@toks=\toks23
307
+ \MT@count=\count100
308
+ LaTeX Info: Redefining \textls on input line 793.
309
+ \MT@outer@kern=\dimen112
310
+ LaTeX Info: Redefining \textmicrotypecontext on input line 1339.
311
+ \MT@listname@count=\count101
312
+ (/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype-pdftex.def
313
+ File: microtype-pdftex.def 2018/01/14 v2.7a Definitions specific to pdftex (RS)
314
+
315
+ LaTeX Info: Redefining \lsstyle on input line 913.
316
+ LaTeX Info: Redefining \lslig on input line 913.
317
+ \MT@outer@space=\skip46
318
+ )
319
+ Package microtype Info: Loading configuration file microtype.cfg.
320
+ (/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype.cfg
321
+ File: microtype.cfg 2018/01/14 v2.7a microtype main configuration file (RS)
322
+ )) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
323
+ Package: geometry 2018/04/16 v5.8 Page Geometry
324
+ (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty
325
+ Package: ifpdf 2017/03/15 v3.2 Provides the ifpdf switch
326
+ ) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty
327
+ Package: ifvtex 2016/05/16 v1.6 Detect VTeX and its facilities (HO)
328
+ Package ifvtex Info: VTeX not detected.
329
+ )
330
+ \Gm@cnth=\count102
331
+ \Gm@cntv=\count103
332
+ \c@Gm@tempcnt=\count104
333
+ \Gm@bindingoffset=\dimen113
334
+ \Gm@wd@mp=\dimen114
335
+ \Gm@odd@mp=\dimen115
336
+ \Gm@even@mp=\dimen116
337
+ \Gm@layoutwidth=\dimen117
338
+ \Gm@layoutheight=\dimen118
339
+ \Gm@layouthoffset=\dimen119
340
+ \Gm@layoutvoffset=\dimen120
341
+ \Gm@dimlist=\toks24
342
+ ) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
343
+ Package: hyperref 2018/02/06 v6.86b Hypertext links for LaTeX
344
+ (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
345
+ Package: hobsub-hyperref 2016/05/16 v1.14 Bundle oberdiek, subset hyperref (HO)
346
+
347
+ (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty
348
+ Package: hobsub-generic 2016/05/16 v1.14 Bundle oberdiek, subset generic (HO)
349
+ Package: hobsub 2016/05/16 v1.14 Construct package bundles (HO)
350
+ Package: infwarerr 2016/05/16 v1.4 Providing info/warning/error messages (HO)
351
+ Package: ltxcmds 2016/05/16 v1.23 LaTeX kernel commands for general use (HO)
352
+ Package hobsub Info: Skipping package `ifluatex' (already loaded).
353
+ Package hobsub Info: Skipping package `ifvtex' (already loaded).
354
+ Package: intcalc 2016/05/16 v1.2 Expandable calculations with integers (HO)
355
+ Package hobsub Info: Skipping package `ifpdf' (already loaded).
356
+ Package: etexcmds 2016/05/16 v1.6 Avoid name clashes with e-TeX commands (HO)
357
+ Package: kvsetkeys 2016/05/16 v1.17 Key value parser (HO)
358
+ Package: kvdefinekeys 2016/05/16 v1.4 Define keys (HO)
359
+ Package: pdftexcmds 2018/01/30 v0.27 Utility functions of pdfTeX for LuaTeX (HO
360
+ )
361
+ Package pdftexcmds Info: LuaTeX not detected.
362
+ Package pdftexcmds Info: \pdf@primitive is available.
363
+ Package pdftexcmds Info: \pdf@ifprimitive is available.
364
+ Package pdftexcmds Info: \pdfdraftmode found.
365
+ Package: pdfescape 2016/05/16 v1.14 Implements pdfTeX's escape features (HO)
366
+ Package: bigintcalc 2016/05/16 v1.4 Expandable calculations on big integers (HO
367
+ )
368
+ Package: bitset 2016/05/16 v1.2 Handle bit-vector datatype (HO)
369
+ Package: uniquecounter 2016/05/16 v1.3 Provide unlimited unique counter (HO)
370
+ )
371
+ Package hobsub Info: Skipping package `hobsub' (already loaded).
372
+ Package: letltxmacro 2016/05/16 v1.5 Let assignment for LaTeX macros (HO)
373
+ Package: hopatch 2016/05/16 v1.3 Wrapper for package hooks (HO)
374
+ Package: xcolor-patch 2016/05/16 xcolor patch
375
+ Package: atveryend 2016/05/16 v1.9 Hooks at the very end of document (HO)
376
+ Package atveryend Info: \enddocument detected (standard20110627).
377
+ Package: atbegshi 2016/06/09 v1.18 At begin shipout hook (HO)
378
+ Package: refcount 2016/05/16 v3.5 Data extraction from label references (HO)
379
+ Package: hycolor 2016/05/16 v1.8 Color options for hyperref/bookmark (HO)
380
+ ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty
381
+ Package: auxhook 2016/05/16 v1.4 Hooks for auxiliary files (HO)
382
+ ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty
383
+ Package: kvoptions 2016/05/16 v3.12 Key value format for package options (HO)
384
+ )
385
+ \@linkdim=\dimen121
386
+ \Hy@linkcounter=\count105
387
+ \Hy@pagecounter=\count106
388
+ (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def
389
+ File: pd1enc.def 2018/02/06 v6.86b Hyperref: PDFDocEncoding definition (HO)
390
+ Now handling font encoding PD1 ...
391
+ ... no UTF-8 mapping file for font encoding PD1
392
+ )
393
+ \Hy@SavedSpaceFactor=\count107
394
+ (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg
395
+ File: hyperref.cfg 2002/06/06 v1.2 hyperref configuration of TeXLive
396
+ )
397
+ Package hyperref Info: Hyper figures OFF on input line 4509.
398
+ Package hyperref Info: Link nesting OFF on input line 4514.
399
+ Package hyperref Info: Hyper index ON on input line 4517.
400
+ Package hyperref Info: Plain pages OFF on input line 4524.
401
+ Package hyperref Info: Backreferencing OFF on input line 4529.
402
+ Package hyperref Info: Implicit mode ON; LaTeX internals redefined.
403
+ Package hyperref Info: Bookmarks ON on input line 4762.
404
+ \c@Hy@tempcnt=\count108
405
+ (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty
406
+ \Urlmuskip=\muskip11
407
+ Package: url 2013/09/16 ver 3.4 Verb mode for urls, etc.
408
+ )
409
+ LaTeX Info: Redefining \url on input line 5115.
410
+ \XeTeXLinkMargin=\dimen122
411
+ \Fld@menulength=\count109
412
+ \Field@Width=\dimen123
413
+ \Fld@charsize=\dimen124
414
+ Package hyperref Info: Hyper figures OFF on input line 6369.
415
+ Package hyperref Info: Link nesting OFF on input line 6374.
416
+ Package hyperref Info: Hyper index ON on input line 6377.
417
+ Package hyperref Info: backreferencing OFF on input line 6384.
418
+ Package hyperref Info: Link coloring OFF on input line 6389.
419
+ Package hyperref Info: Link coloring with OCG OFF on input line 6394.
420
+ Package hyperref Info: PDF/A mode OFF on input line 6399.
421
+ LaTeX Info: Redefining \ref on input line 6439.
422
+ LaTeX Info: Redefining \pageref on input line 6443.
423
+ \Hy@abspage=\count110
424
+ \c@Item=\count111
425
+ \c@Hfootnote=\count112
426
+ )
427
+ Package hyperref Info: Driver (autodetected): hpdftex.
428
+ (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
429
+ File: hpdftex.def 2018/02/06 v6.86b Hyperref driver for pdfTeX
430
+ \Fld@listcount=\count113
431
+ \c@bookmark@seq@number=\count114
432
+ (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty
433
+ Package: rerunfilecheck 2016/05/16 v1.8 Rerun checks for auxiliary files (HO)
434
+ Package uniquecounter Info: New unique counter `rerunfilecheck' on input line 2
435
+ 82.
436
+ )
437
+ \Hy@SectionHShift=\skip47
438
+ )
439
+ Package hyperref Info: Option `unicode' set `true' on input line 30.
440
+ (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def
441
+ File: puenc.def 2018/02/06 v6.86b Hyperref: PDF Unicode definition (HO)
442
+ Now handling font encoding PU ...
443
+ ... no UTF-8 mapping file for font encoding PU
444
+ )
445
+ Package hyperref Info: Option `breaklinks' set `true' on input line 30.
446
+ (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
447
+ Package: color 2016/07/10 v1.1e Standard LaTeX Color (DPC)
448
+ (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg
449
+ File: color.cfg 2016/01/02 v1.6 sample color configuration
450
+ )
451
+ Package color Info: Driver file: pdftex.def on input line 147.
452
+ (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def
453
+ File: pdftex.def 2018/01/08 v1.0l Graphics/color driver for pdftex
454
+ )) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
455
+ Package: fancyvrb 2008/02/07
456
+
457
+ Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix
458
+ <2008/02/07> (tvz)
459
+ \FV@CodeLineNo=\count115
460
+ \FV@InFile=\read1
461
+ \FV@TabBox=\box28
462
+ \c@FancyVerbLine=\count116
463
+ \FV@StepNumber=\count117
464
+ \FV@OutFile=\write3
465
+ ) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty
466
+ Package: framed 2011/10/22 v 0.96: framed or shaded text with page breaks
467
+ \OuterFrameSep=\skip48
468
+ \fb@frw=\dimen125
469
+ \fb@frh=\dimen126
470
+ \FrameRule=\dimen127
471
+ \FrameSep=\dimen128
472
+ ) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
473
+ Package: graphicx 2017/06/01 v1.1a Enhanced LaTeX Graphics (DPC,SPQR)
474
+ (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
475
+ Package: graphics 2017/06/25 v1.2c Standard LaTeX Graphics (DPC,SPQR)
476
+ (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty
477
+ Package: trig 2016/01/03 v1.10 sin cos tan (DPC)
478
+ ) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg
479
+ File: graphics.cfg 2016/06/04 v1.11 sample graphics configuration
480
+ )
481
+ Package graphics Info: Driver file: pdftex.def on input line 99.
482
+ )
483
+ \Gin@req@height=\dimen129
484
+ \Gin@req@width=\dimen130
485
+ ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grffile.sty
486
+ Package: grffile 2017/06/30 v1.18 Extended file name support for graphics (HO)
487
+ Package grffile Info: Option `multidot' is set to `true'.
488
+ Package grffile Info: Option `extendedchars' is set to `false'.
489
+ Package grffile Info: Option `space' is set to `true'.
490
+ Package grffile Info: \Gin@ii of package `graphicx' fixed on input line 494.
491
+ ) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty
492
+ Package: parskip 2001/04/09 non-zero parskip adjustments
493
+ ) (/usr/share/texlive/texmf-dist/tex/latex/titling/titling.sty
494
+ Package: titling 2009/09/04 v2.1d maketitle typesetting
495
+ \thanksmarkwidth=\skip49
496
+ \thanksmargin=\skip50
497
+ \droptitle=\skip51
498
+ ) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty
499
+ Package: longtable 2014/10/28 v4.11 Multi-page Table package (DPC)
500
+ \LTleft=\skip52
501
+ \LTright=\skip53
502
+ \LTpre=\skip54
503
+ \LTpost=\skip55
504
+ \LTchunksize=\count118
505
+ \LTcapwidth=\dimen131
506
+ \LT@head=\box29
507
+ \LT@firsthead=\box30
508
+ \LT@foot=\box31
509
+ \LT@lastfoot=\box32
510
+ \LT@cols=\count119
511
+ \LT@rows=\count120
512
+ \c@LT@tables=\count121
513
+ \c@LT@chunks=\count122
514
+ \LT@p@ftn=\toks25
515
+ ) (/usr/share/texlive/texmf-dist/tex/latex/multirow/multirow.sty
516
+ Package: multirow 2018/08/03 v2.3 Span multiple rows of a table
517
+ \multirow@colwidth=\skip56
518
+ \multirow@cntb=\count123
519
+ \multirow@dima=\skip57
520
+ \bigstrutjot=\dimen132
521
+ ) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
522
+ Package: xcolor 2016/05/11 v2.12 LaTeX color extensions (UK)
523
+ (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg
524
+ File: color.cfg 2016/01/02 v1.6 sample color configuration
525
+ )
526
+ Package xcolor Info: Driver file: pdftex.def on input line 225.
527
+ (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty
528
+ Package: colortbl 2018/05/02 v1.0c Color table columns (DPC)
529
+ (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty
530
+ Package: array 2018/04/30 v2.4h Tabular extension package (FMi)
531
+ \col@sep=\dimen133
532
+ \ar@mcellbox=\box33
533
+ \extrarowheight=\dimen134
534
+ \NC@list=\toks26
535
+ \extratabsurround=\skip58
536
+ \backup@length=\skip59
537
+ \ar@cellbox=\box34
538
+ )
539
+ \everycr=\toks27
540
+ \minrowclearance=\skip60
541
+ )
542
+ LaTeX Info: Redefining \color on input line 709.
543
+ \rownum=\count124
544
+ Package xcolor Info: Model `cmy' substituted by `cmy0' on input line 1348.
545
+ Package xcolor Info: Model `hsb' substituted by `rgb' on input line 1352.
546
+ Package xcolor Info: Model `RGB' extended on input line 1364.
547
+ Package xcolor Info: Model `HTML' substituted by `rgb' on input line 1366.
548
+ Package xcolor Info: Model `Hsb' substituted by `hsb' on input line 1367.
549
+ Package xcolor Info: Model `tHsb' substituted by `hsb' on input line 1368.
550
+ Package xcolor Info: Model `HSB' substituted by `hsb' on input line 1369.
551
+ Package xcolor Info: Model `Gray' substituted by `gray' on input line 1370.
552
+ Package xcolor Info: Model `wave' substituted by `hsb' on input line 1371.
553
+ ) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty
554
+ \wrapoverhang=\dimen135
555
+ \WF@size=\dimen136
556
+ \c@WF@wrappedlines=\count125
557
+ \WF@box=\box35
558
+ \WF@everypar=\toks28
559
+ Package: wrapfig 2003/01/31 v 3.6
560
+ ) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty
561
+ Package: float 2001/11/08 v1.3d Float enhancements (AL)
562
+ \c@float@type=\count126
563
+ \float@exts=\toks29
564
+ \float@box=\box36
565
+ \@float@everytoks=\toks30
566
+ \@floatcapt=\box37
567
+ ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/pdflscape.sty
568
+ Package: pdflscape 2016/05/14 v0.11 Display of landscape pages in PDF (HO)
569
+ (/usr/share/texlive/texmf-dist/tex/latex/graphics/lscape.sty
570
+ Package: lscape 2000/10/22 v3.01 Landscape Pages (DPC)
571
+ )
572
+ Package pdflscape Info: Auto-detected driver: pdftex on input line 81.
573
+ ) (/usr/share/texlive/texmf-dist/tex/latex/tabu/tabu.sty
574
+ Package: tabu 2011/02/26 v2.8 - flexible LaTeX tabulars (FC)
575
+ (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty
576
+ Package: varwidth 2009/03/30 ver 0.92; Variable-width minipages
577
+ \@vwid@box=\box38
578
+ \sift@deathcycles=\count127
579
+ \@vwid@loff=\dimen137
580
+ \@vwid@roff=\dimen138
581
+ )
582
+ \c@taburow=\count128
583
+ \tabu@nbcols=\count129
584
+ \tabu@cnt=\count130
585
+ \tabu@Xcol=\count131
586
+ \tabu@alloc=\count132
587
+ \tabu@nested=\count133
588
+ \tabu@target=\dimen139
589
+ \tabu@spreadtarget=\dimen140
590
+ \tabu@naturalX=\dimen141
591
+ \tabucolX=\dimen142
592
+ \tabu@Xsum=\dimen143
593
+ \extrarowdepth=\dimen144
594
+ \abovetabulinesep=\dimen145
595
+ \belowtabulinesep=\dimen146
596
+ \tabustrutrule=\dimen147
597
+ \tabu@thebody=\toks31
598
+ \tabu@footnotes=\toks32
599
+ \tabu@box=\box39
600
+ \tabu@arstrutbox=\box40
601
+ \tabu@hleads=\box41
602
+ \tabu@vleads=\box42
603
+ \tabu@cellskip=\skip61
604
+ ) (/usr/share/texlive/texmf-dist/tex/latex/threeparttable/threeparttable.sty
605
+ Package: threeparttable 2003/06/13 v 3.0
606
+ \@tempboxb=\box43
607
+ ) (/usr/share/texlive/texmf-dist/tex/generic/ulem/ulem.sty
608
+ \UL@box=\box44
609
+ \UL@hyphenbox=\box45
610
+ \UL@skip=\skip62
611
+ \UL@hook=\toks33
612
+ \UL@height=\dimen148
613
+ \UL@pe=\count134
614
+ \UL@pixel=\dimen149
615
+ \ULC@box=\box46
616
+ Package: ulem 2012/05/18
617
+ \ULdepth=\dimen150
618
+ )
619
+
620
+ ! LaTeX Error: File `bbm.sty' not found.
621
+
622
+ Type X to quit or <RETURN> to proceed,
623
+ or enter new name. (Default extension: sty)
624
+
625
+ Enter file name:
626
+ ! Emergency stop.
627
+ <read *>
628
+
629
+ l.148 \usepackage
630
+ {booktabs}^^M
631
+ Here is how much of TeX's memory you used:
632
+ 13093 strings out of 494586
633
+ 185907 string characters out of 6177801
634
+ 304599 words of memory out of 5000000
635
+ 16615 multiletter control sequences out of 15000+600000
636
+ 4815 words of font info for 17 fonts, out of 8000000 for 9000
637
+ 14 hyphenation exceptions out of 8191
638
+ 41i,0n,38p,238b,270s stack positions out of 5000i,500n,10000p,200000b,80000s
639
+
640
+ ! ==> Fatal error occurred, no output PDF file produced!