evolvable 1.2.0 → 2.0.0

metadata

@@ -1,61 +1,44 @@
 --- !ruby/object:Gem::Specification
 name: evolvable
 version: !ruby/object:Gem::Version
-  version: 1.2.0
+  version: 2.0.0
 platform: ruby
 authors:
 - Matt Ruzicka
-autorequire:
 bindir: exe
 cert_chain: []
-date: 2022-01-22 00:00:00.000000000 Z
+date: 1980-01-02 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
-  name: bundler
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '2.0'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '2.0'
-- !ruby/object:Gem::Dependency
-  name: readme_yard
+  name: irb
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '1.0'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '1.0'
 - !ruby/object:Gem::Dependency
-  name: yard
+  name: readme_yard
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '0.5'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
-description:
-email:
+        version: '0.5'
 executables:
-- hello
+- hello_evolvable_world
 extensions: []
 extra_rdoc_files: []
 files:
@@ -69,21 +52,61 @@ files:
 - README_YARD.md
 - bin/console
 - bin/setup
+- docs/Evolvable.html
+- docs/Evolvable/ClassMethods.html
+- docs/Evolvable/Community.html
+- docs/Evolvable/Community/ClassMethods.html
+- docs/Evolvable/CountGene.html
+- docs/Evolvable/EqualizeGoal.html
+- docs/Evolvable/Error.html
+- docs/Evolvable/Evaluation.html
+- docs/Evolvable/Evolution.html
+- docs/Evolvable/Gene.html
+- docs/Evolvable/Gene/ClassMethods.html
+- docs/Evolvable/GeneCluster.html
+- docs/Evolvable/GeneCluster/ClassMethods.html
+- docs/Evolvable/GeneCombination.html
+- docs/Evolvable/GeneSpace.html
+- docs/Evolvable/Genome.html
+- docs/Evolvable/Goal.html
+- docs/Evolvable/MaximizeGoal.html
+- docs/Evolvable/MinimizeGoal.html
+- docs/Evolvable/Mutation.html
+- docs/Evolvable/PointCrossover.html
+- docs/Evolvable/Population.html
+- docs/Evolvable/RigidCountGene.html
+- docs/Evolvable/Selection.html
+- docs/Evolvable/Serializer.html
+- docs/Evolvable/UniformCrossover.html
+- docs/_index.html
+- docs/class_list.html
+- docs/css/common.css
+- docs/css/full_list.css
+- docs/css/style.css
+- docs/file.README.html
+- docs/file_list.html
+- docs/frames.html
+- docs/index.html
+- docs/js/app.js
+- docs/js/full_list.js
+- docs/js/jquery.js
+- docs/method_list.html
+- docs/top-level-namespace.html
 - evolvable.gemspec
 - examples/ascii_art.rb
 - examples/ascii_gene.rb
-- examples/hello_world.rb
-- examples/images/diagram.png
 - examples/stickman.rb
-- exe/hello
+- exe/hello_evolvable_world
 - lib/evolvable.rb
+- lib/evolvable/community.rb
 - lib/evolvable/count_gene.rb
 - lib/evolvable/equalize_goal.rb
-- lib/evolvable/error/undefined_method.rb
 - lib/evolvable/evaluation.rb
 - lib/evolvable/evolution.rb
 - lib/evolvable/gene.rb
+- lib/evolvable/gene_cluster.rb
 - lib/evolvable/gene_combination.rb
+- lib/evolvable/gene_space.rb
 - lib/evolvable/genome.rb
 - lib/evolvable/goal.rb
 - lib/evolvable/maximize_goal.rb
@@ -92,7 +115,6 @@ files:
 - lib/evolvable/point_crossover.rb
 - lib/evolvable/population.rb
 - lib/evolvable/rigid_count_gene.rb
-- lib/evolvable/search_space.rb
 - lib/evolvable/selection.rb
 - lib/evolvable/serializer.rb
 - lib/evolvable/uniform_crossover.rb
@@ -103,8 +125,8 @@ licenses:
 metadata:
   homepage_uri: https://github.com/mattruzicka/evolvable
   source_code_uri: https://github.com/mattruzicka/evolvable
-  changelog_uri: https://github.com/mattruzicka/evolvable/blob/master/CHANGELOG.md
-post_install_message:
+  changelog_uri: https://github.com/mattruzicka/evolvable/blob/main/CHANGELOG.md
+  documentation_uri: https://mattruzicka.github.io/evolvable
 rdoc_options: []
 require_paths:
 - lib
@@ -112,15 +134,14 @@ required_ruby_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
-      version: '0'
+      version: '2.6'
 required_rubygems_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.3.3
-signing_key:
+rubygems_version: 3.6.8
 specification_version: 4
 summary: Add evolutionary behavior to any Ruby object
 test_files: []

data/exe/hello

@@ -1,16 +0,0 @@
-#!/usr/bin/env ruby
-
-require 'bundler/setup'
-require 'evolvable'
-require 'byebug'
-
-Dir['./examples/*.rb'].each { |f| require f }
-
-population = HelloWorld.new_population(size: 100,
-                                       evaluation: { equalize: 0 },
-                                       mutation: { probability: 0.6 })
-population.evolve
-HelloWorld.start_loop(population)
-
-require 'irb'
-IRB.start(__FILE__)

data/lib/evolvable/error/undefined_method.rb

@@ -1,7 +0,0 @@
-# frozen_string_literal: true
-
-module Evolvable
-  module Errors
-    class UndefinedMethod < StandardError; end
-  end
-end

data/lib/evolvable/search_space.rb

@@ -1,181 +0,0 @@
-# frozen_string_literal: true
-
-module Evolvable
-  #
-  # @readme
-  #   The search space encapsulates the range of possible genes
-  #   for a particular evolvable. You can think of it as the boundaries of
-  #   genetic variation. It is configured via the
-  #   [.search_space](#evolvableclasssearch_space) method that you define
-  #   on your evolvable class. It's used by populations to initialize
-  #   new evolvables.
-  #
-  #   Evolvable provides flexibility in how you define your search space.
-  #   The below example implementations for `.search_space` produce the
-  #   exact same search space for the
-  #   [Hello World](https://github.com/mattruzicka/evolvable#hello-world)
-  #   demo program. The different styles arguably vary in suitability for
-  #   different contexts, perhaps depending on how programs are loaded and
-  #   the number of different gene types.
-  #
-  # @example
-  #   # All 9 of these example definitions are equivalent
-  #
-  #   # Hash syntax
-  #   { chars: { type: 'CharGene', max_count: 100 } }
-  #   { chars: { type: 'CharGene', min_count: 1, max_count: 100 } }
-  #   { chars: { type: 'CharGene', count: 1..100 } }
-  #
-  #   # Array of arrays syntax
-  #   [[:chars, 'CharGene', 1..100]]
-  #   [['chars', 'CharGene',  1..100]]
-  #   [['CharGene', 1..100]]
-  #
-  #   # A single array works when there's only one type of gene
-  #   ['CharGene', 1..100]
-  #   [:chars, 'CharGene', 1..100]
-  #   ['chars', 'CharGene', 1..100]
-  #
-  #
-
-  class SearchSpace
-    class << self
-      def build(config, evolvable_class = nil)
-        if config.is_a?(SearchSpace)
-          config.evolvable_class = evolvable_class if evolvable_class
-          config
-        else
-          new(config: config, evolvable_class: evolvable_class)
-        end
-      end
-    end
-
-    def initialize(config: {}, evolvable_class: nil)
-      @evolvable_class = evolvable_class
-      @config = normalize_config(config)
-    end
-
-    attr_accessor :evolvable_class, :config
-
-    def new_genome
-      Genome.new(config: new_genome_config)
-    end
-
-    def merge_search_space(val)
-      val = val.config if val.is_a?(self.class)
-      @config.merge normalize_config(val)
-    end
-
-    def merge_search_space!(val)
-      val = val.config if val.is_a?(self.class)
-      @config.merge! normalize_config(val)
-    end
-
-    private
-
-    def normalize_config(config)
-      case config
-      when Hash
-        normalize_hash_config(config)
-      when Array
-        if config.first.is_a?(Array)
-          build_config_from_2d_array(config)
-        else
-          merge_config_with_array({}, config)
-        end
-      end
-    end
-
-    def normalize_hash_config(config)
-      config.each do |gene_key, gene_config|
-        next unless gene_config[:type]
-
-        gene_class = lookup_gene_class(gene_config[:type])
-        gene_class.key = gene_key
-        gene_config[:class] = gene_class
-      end
-    end
-
-    def build_config_from_2d_array(array_config)
-      config = {}
-      array_config.each { |array| merge_config_with_array(config, array) }
-      config
-    end
-
-    def merge_config_with_array(config, gene_array)
-      gene_key, gene_class, count = extract_array_configs(gene_array)
-      gene_class.key = gene_key
-      config[gene_key] = { class: gene_class, count: count }
-      config
-    end
-
-    def extract_array_configs(gene_array)
-      first_item = gene_array.first
-      return extract_array_with_key_configs(gene_array) if first_item.is_a?(Symbol)
-
-      gene_class = lookup_gene_class(first_item)
-      _type, count = gene_array
-      [gene_class, gene_class, count]
-    rescue NameError
-      extract_array_with_key_configs(gene_array)
-    end
-
-    def extract_array_with_key_configs(gene_array)
-      gene_key, type, count = gene_array
-      gene_class = lookup_gene_class(type)
-      [gene_key, gene_class, count]
-    end
-
-    def lookup_gene_class(class_name)
-      return class_name if class_name.is_a?(Class)
-
-      (@evolvable_class || Object).const_get(class_name)
-    end
-
-    def new_genome_config
-      genome_config = {}
-      config.each do |gene_key, gene_config|
-        genome_config[gene_key] = new_gene_config(gene_config)
-      end
-      genome_config
-    end
-
-    def new_gene_config(gene_config)
-      count_gene = init_count_gene(gene_config)
-      gene_class = gene_config[:class]
-      genes = Array.new(count_gene.count) { gene_class.new }
-      { count_gene: count_gene, genes: genes }
-    end
-
-    def init_count_gene(gene_config)
-      min = gene_config[:min_count]
-      max = gene_config[:max_count]
-      return init_min_max_count_gene(min, max) if min || max
-
-      count = gene_config[:count] || 1
-      case count
-      when Numeric
-        RigidCountGene.new(count)
-      when Range
-        CountGene.new(range: count)
-      when String
-        Kernel.const_get(gene_config[:count]).new
-      when Class
-        gene_config[:count].new
-      end
-    end
-
-    def init_min_max_count_gene(min, max)
-      min ||= 1
-      max ||= min * 10
-      CountGene.new(range: min..max)
-    end
-  end
-
-  #
-  # @deprecated
-  #   Will be removed in 2.0
-  #   use {SearchSpace} instead
-  #
-  class GeneSpace < SearchSpace; end
-end