evolvable 1.2.0 → 2.0.0

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Files changed (79) hide show
  1. checksums.yaml +4 -4
  2. data/.yardopts +2 -0
  3. data/CHANGELOG.md +24 -0
  4. data/Gemfile +2 -2
  5. data/Gemfile.lock +44 -25
  6. data/README.md +498 -190
  7. data/README_YARD.md +85 -166
  8. data/bin/console +10 -19
  9. data/docs/Evolvable/ClassMethods.html +1233 -0
  10. data/docs/Evolvable/Community/ClassMethods.html +708 -0
  11. data/docs/Evolvable/Community.html +1342 -0
  12. data/docs/Evolvable/CountGene.html +886 -0
  13. data/docs/Evolvable/EqualizeGoal.html +347 -0
  14. data/docs/Evolvable/Error.html +134 -0
  15. data/docs/Evolvable/Evaluation.html +773 -0
  16. data/docs/Evolvable/Evolution.html +616 -0
  17. data/docs/Evolvable/Gene/ClassMethods.html +413 -0
  18. data/docs/Evolvable/Gene.html +522 -0
  19. data/docs/Evolvable/GeneCluster/ClassMethods.html +431 -0
  20. data/docs/Evolvable/GeneCluster.html +280 -0
  21. data/docs/Evolvable/GeneCombination.html +515 -0
  22. data/docs/Evolvable/GeneSpace.html +619 -0
  23. data/docs/Evolvable/Genome.html +1070 -0
  24. data/docs/Evolvable/Goal.html +500 -0
  25. data/docs/Evolvable/MaximizeGoal.html +348 -0
  26. data/docs/Evolvable/MinimizeGoal.html +348 -0
  27. data/docs/Evolvable/Mutation.html +729 -0
  28. data/docs/Evolvable/PointCrossover.html +444 -0
  29. data/docs/Evolvable/Population.html +2826 -0
  30. data/docs/Evolvable/RigidCountGene.html +501 -0
  31. data/docs/Evolvable/Selection.html +594 -0
  32. data/docs/Evolvable/Serializer.html +293 -0
  33. data/docs/Evolvable/UniformCrossover.html +286 -0
  34. data/docs/Evolvable.html +1619 -0
  35. data/docs/_index.html +341 -0
  36. data/docs/class_list.html +54 -0
  37. data/docs/css/common.css +1 -0
  38. data/docs/css/full_list.css +58 -0
  39. data/docs/css/style.css +503 -0
  40. data/docs/file.README.html +750 -0
  41. data/docs/file_list.html +59 -0
  42. data/docs/frames.html +22 -0
  43. data/docs/index.html +750 -0
  44. data/docs/js/app.js +344 -0
  45. data/docs/js/full_list.js +242 -0
  46. data/docs/js/jquery.js +4 -0
  47. data/docs/method_list.html +1302 -0
  48. data/docs/top-level-namespace.html +110 -0
  49. data/evolvable.gemspec +6 -6
  50. data/examples/ascii_art.rb +5 -9
  51. data/examples/stickman.rb +25 -33
  52. data/{examples/hello_world.rb → exe/hello_evolvable_world} +46 -30
  53. data/lib/evolvable/community.rb +190 -0
  54. data/lib/evolvable/count_gene.rb +65 -0
  55. data/lib/evolvable/equalize_goal.rb +2 -9
  56. data/lib/evolvable/evaluation.rb +113 -14
  57. data/lib/evolvable/evolution.rb +38 -15
  58. data/lib/evolvable/gene.rb +124 -25
  59. data/lib/evolvable/gene_cluster.rb +106 -0
  60. data/lib/evolvable/gene_combination.rb +57 -16
  61. data/lib/evolvable/gene_space.rb +111 -0
  62. data/lib/evolvable/genome.rb +32 -4
  63. data/lib/evolvable/goal.rb +19 -24
  64. data/lib/evolvable/maximize_goal.rb +2 -9
  65. data/lib/evolvable/minimize_goal.rb +3 -9
  66. data/lib/evolvable/mutation.rb +87 -41
  67. data/lib/evolvable/point_crossover.rb +24 -4
  68. data/lib/evolvable/population.rb +258 -84
  69. data/lib/evolvable/rigid_count_gene.rb +36 -0
  70. data/lib/evolvable/selection.rb +68 -14
  71. data/lib/evolvable/serializer.rb +46 -0
  72. data/lib/evolvable/uniform_crossover.rb +30 -6
  73. data/lib/evolvable/version.rb +2 -1
  74. data/lib/evolvable.rb +268 -107
  75. metadata +57 -36
  76. data/examples/images/diagram.png +0 -0
  77. data/exe/hello +0 -16
  78. data/lib/evolvable/error/undefined_method.rb +0 -7
  79. data/lib/evolvable/search_space.rb +0 -181
data/docs/Evolvable/Selection.html ADDED
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+ <!DOCTYPE html>
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+ <html>
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+ <head>
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+ <meta charset="utf-8">
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+ <meta name="viewport" content="width=device-width, initial-scale=1.0">
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+ <title>
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+ Class: Evolvable::Selection
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+
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+ &mdash; Documentation by YARD 0.9.37
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+
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+ </title>
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+
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+ <link rel="stylesheet" href="../css/style.css" type="text/css" />
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+
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+ <link rel="stylesheet" href="../css/common.css" type="text/css" />
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+
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+ <script type="text/javascript">
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+ pathId = "Evolvable::Selection";
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+ relpath = '../';
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+ </script>
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+
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+
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+ <script type="text/javascript" charset="utf-8" src="../js/jquery.js"></script>
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+
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+ <script type="text/javascript" charset="utf-8" src="../js/app.js"></script>
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+
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+
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+ </head>
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+ <body>
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+ <div class="nav_wrap">
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+ <iframe id="nav" src="../class_list.html?1"></iframe>
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+ <div id="resizer"></div>
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+ </div>
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+
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+ <div id="main" tabindex="-1">
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+ <div id="header">
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+ <div id="menu">
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+
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+ <a href="../_index.html">Index (S)</a> &raquo;
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+ <span class='title'><span class='object_link'><a href="../Evolvable.html" title="Evolvable (module)">Evolvable</a></span></span>
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+ &raquo;
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+ <span class="title">Selection</span>
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+
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+ </div>
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+
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+ <div id="search">
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+
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+ <a class="full_list_link" id="class_list_link"
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+ href="../class_list.html">
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+
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+ <svg width="24" height="24">
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+ <rect x="0" y="4" width="24" height="4" rx="1" ry="1"></rect>
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+ <rect x="0" y="12" width="24" height="4" rx="1" ry="1"></rect>
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+ <rect x="0" y="20" width="24" height="4" rx="1" ry="1"></rect>
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+ </svg>
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+ </a>
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+
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+ </div>
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+ <div class="clear"></div>
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+ </div>
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+
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+ <div id="content"><h1>Class: Evolvable::Selection
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+
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+
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+
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+ </h1>
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+ <div class="box_info">
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+
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+ <dl>
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+ <dt>Inherits:</dt>
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+ <dd>
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+ <span class="inheritName">Object</span>
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+
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+ <ul class="fullTree">
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+ <li>Object</li>
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+
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+ <li class="next">Evolvable::Selection</li>
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+
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+ </ul>
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+ <a href="#" class="inheritanceTree">show all</a>
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+
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+ </dd>
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+ </dl>
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+
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+
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+
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+
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+ <dl>
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+ <dt>Extended by:</dt>
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+ <dd>Forwardable</dd>
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+ </dl>
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+
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+
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+
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+
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+
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+
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+
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+
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+ <dl>
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+ <dt>Defined in:</dt>
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+ <dd>lib/evolvable/selection.rb</dd>
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+ </dl>
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+
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+ </div>
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+
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+ <h2>Overview</h2><div class="docstring">
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+ <div class="discussion">
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+ <p>Selection determines which evolvables will serve as parents for the next
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+ generation. You can control the selection process in several ways:</p>
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+
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+ <p>Set the selection size during population initialization:</p>
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+
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+ <pre class="code ruby"><code class="ruby"><span class='id identifier rubyid_population'>population</span> <span class='op'>=</span> <span class='const'>MyEvolvable</span><span class='period'>.</span><span class='id identifier rubyid_new_population'>new_population</span><span class='lparen'>(</span>
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+ <span class='label'>selection:</span> <span class='lbrace'>{</span> <span class='label'>size:</span> <span class='int'>3</span> <span class='rbrace'>}</span>
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+ <span class='rparen'>)</span>
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+ </code></pre>
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+
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+ <p>Adjust the selection size after initialization:</p>
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+
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+ <pre class="code ruby"><code class="ruby"><span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_selection_size'>selection_size</span> <span class='op'>=</span> <span class='int'>4</span>
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+ </code></pre>
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+
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+ <p>Manually assign the selected evolvables:</p>
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+
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+ <pre class="code ruby"><code class="ruby"><span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_selected_evolvables'>selected_evolvables</span> <span class='op'>=</span> <span class='lbracket'>[</span><span class='id identifier rubyid_evolvable1'>evolvable1</span><span class='comma'>,</span> <span class='id identifier rubyid_evolvable2'>evolvable2</span><span class='rbracket'>]</span>
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+ </code></pre>
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+
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+ <p>Or evolve a custom selection directly:</p>
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+
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+ <pre class="code ruby"><code class="ruby"><span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_evolve_selected'>evolve_selected</span><span class='lparen'>(</span><span class='lbracket'>[</span><span class='id identifier rubyid_evolvable1'>evolvable1</span><span class='comma'>,</span> <span class='id identifier rubyid_evolvable2'>evolvable2</span><span class='rbracket'>]</span><span class='rparen'>)</span>
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+ </code></pre>
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+
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+ <p>This flexibility lets you implement custom selection strategies,
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+ overriding or augmenting the built-in behavior.</p>
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+
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+
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+ </div>
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+ </div>
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+ <div class="tags">
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+
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+
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+ </div>
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+
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+
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+
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+ <h2>Instance Attribute Summary <small><a href="#" class="summary_toggle">collapse</a></small></h2>
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+ <ul class="summary">
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+
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+ <li class="public ">
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+ <span class="summary_signature">
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+
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+ <a href="#size-instance_method" title="#size (instance method)">#<strong>size</strong> &#x21d2; Integer </a>
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+
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+
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+
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+ </span>
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+
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+
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+
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+
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+
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+ <span class="summary_desc"><div class='inline'><p>The number of evolvables to select as parents for the next generation.</p>
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+ </div></span>
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+
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+ </li>
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+
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+
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+ </ul>
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+
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+
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+
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+
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+
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+ <h2>
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+ Instance Method Summary
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+ <small><a href="#" class="summary_toggle">collapse</a></small>
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+ </h2>
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+
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+ <ul class="summary">
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+
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+ <li class="public ">
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+ <span class="summary_signature">
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+
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+ <a href="#call-instance_method" title="#call (instance method)">#<strong>call</strong>(population) &#x21d2; Evolvable::Population </a>
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+
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+
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+
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+ </span>
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+
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+
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+
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+
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+
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+
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+
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+
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+ <span class="summary_desc"><div class='inline'><p>Performs selection on the population.</p>
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+ </div></span>
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+
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+ </li>
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+
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+
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+ <li class="public ">
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+ <span class="summary_signature">
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+
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+ <a href="#initialize-instance_method" title="#initialize (instance method)">#<strong>initialize</strong>(size: 2) &#x21d2; Selection </a>
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+
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+
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+
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+ </span>
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+
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+
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+ <span class="note title constructor">constructor</span>
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+
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+
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+
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+
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+
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+
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+
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+
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+ <span class="summary_desc"><div class='inline'><p>Initializes a new selection object.</p>
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+ </div></span>
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+
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+ </li>
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+
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+
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+ <li class="public ">
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+ <span class="summary_signature">
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+
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+ <a href="#select_evolvables-instance_method" title="#select_evolvables (instance method)">#<strong>select_evolvables</strong>(evolvables) &#x21d2; Array&lt;Evolvable&gt; </a>
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+
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+
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+
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+ </span>
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+
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+
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+
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+
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+
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+
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+ <span class="summary_desc"><div class='inline'><p>Selects the best evolvables from the given collection.</p>
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+ </div></span>
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+
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+ </li>
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+
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+
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+ </ul>
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+
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+
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+
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+ <div id="constructor_details" class="method_details_list">
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+ <h2>Constructor Details</h2>
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+
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+ <div class="method_details first">
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+ <h3 class="signature first" id="initialize-instance_method">
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+
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+ #<strong>initialize</strong>(size: 2) &#x21d2; <tt><span class='object_link'><a href="" title="Evolvable::Selection (class)">Selection</a></span></tt>
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+
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+
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+
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+
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+
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+ </h3><div class="docstring">
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+ <div class="discussion">
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+ <p>Initializes a new selection object.</p>
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+
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+
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+ </div>
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+ </div>
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+ <div class="tags">
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+ <p class="tag_title">Parameters:</p>
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+ <ul class="param">
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+
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+ <li>
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+
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+ <span class='name'>size</span>
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+
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+
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+ <span class='type'>(<tt>Integer</tt>)</span>
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+
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+
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+ <em class="default">(defaults to: <tt>2</tt>)</em>
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+
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+
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+ &mdash;
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+ <div class='inline'><p>The number of instances to select from each generation
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+ to perform crossover and generate or &quot;breed&quot; the next generation.
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+ The default is 2.</p>
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+ </div>
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+
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+ </li>
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+
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+ </ul>
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+
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+
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+ </div><table class="source_code">
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+ <tr>
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+ <td>
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+ <pre class="lines">
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+
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+
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+ 48
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+ 49
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+ 50</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/evolvable/selection.rb', line 48</span>
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+
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+ <span class='kw'>def</span> <span class='id identifier rubyid_initialize'>initialize</span><span class='lparen'>(</span><span class='label'>size:</span> <span class='int'>2</span><span class='rparen'>)</span>
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+ <span class='ivar'>@size</span> <span class='op'>=</span> <span class='id identifier rubyid_size'>size</span>
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+ <span class='kw'>end</span></pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+
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+ </div>
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+
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+ <div id="instance_attr_details" class="attr_details">
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+ <h2>Instance Attribute Details</h2>
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+
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+
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+ <span id="size=-instance_method"></span>
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+ <div class="method_details first">
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+ <h3 class="signature first" id="size-instance_method">
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+
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+ #<strong>size</strong> &#x21d2; <tt>Integer</tt>
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+
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+
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+
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+
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+
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+ </h3><div class="docstring">
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+ <div class="discussion">
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+ <p>The number of evolvables to select as parents for the next generation.</p>
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+
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+
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+ </div>
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+ </div>
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+ <div class="tags">
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+
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+ <p class="tag_title">Returns:</p>
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+ <ul class="return">
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+
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+ <li>
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+
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+
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+ <span class='type'>(<tt>Integer</tt>)</span>
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+
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+
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+
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+ &mdash;
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+ <div class='inline'><p>The selection size</p>
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+ </div>
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+
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+ </li>
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+
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+ </ul>
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+
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+ </div><table class="source_code">
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+ <tr>
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+ <td>
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+ <pre class="lines">
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+
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+ 56
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+ 57
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+ 58</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/evolvable/selection.rb', line 56</span>
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+
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+ <span class='kw'>def</span> <span class='id identifier rubyid_size'>size</span>
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+ <span class='ivar'>@size</span>
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+ <span class='kw'>end</span></pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+
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+ </div>
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+
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+
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+ <div id="instance_method_details" class="method_details_list">
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+ <h2>Instance Method Details</h2>
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+
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+
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+ <div class="method_details first">
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+ <h3 class="signature first" id="call-instance_method">
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+
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+ #<strong>call</strong>(population) &#x21d2; <tt><span class='object_link'><a href="Population.html" title="Evolvable::Population (class)">Evolvable::Population</a></span></tt>
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+
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+
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+
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+ </h3><div class="docstring">
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+ <div class="discussion">
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+ <p>Performs selection on the population.
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+ Takes the evaluated and sorted evolvables and selects a subset to
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+ become parents for the next generation.</p>
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+
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+
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+ </div>
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+ </div>
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+ <div class="tags">
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+ <p class="tag_title">Parameters:</p>
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+ <ul class="param">
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+
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+ <li>
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+
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+ <span class='name'>population</span>
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+
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+
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+ <span class='type'>(<tt><span class='object_link'><a href="Population.html" title="Evolvable::Population (class)">Evolvable::Population</a></span></tt>)</span>
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+
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+
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+
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+ &mdash;
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+ <div class='inline'><p>The population to perform selection on</p>
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+ </div>
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+
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+ </li>
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+
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+ </ul>
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+
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+ <p class="tag_title">Returns:</p>
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+ <ul class="return">
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+
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+ <li>
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+
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+
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+ <span class='type'>(<tt><span class='object_link'><a href="Population.html" title="Evolvable::Population (class)">Evolvable::Population</a></span></tt>)</span>
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+
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+
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+
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+ &mdash;
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+ <div class='inline'><p>The population with selected parent evolvables</p>
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+ </div>
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+
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+ </li>
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+
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+ </ul>
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+
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+ </div><table class="source_code">
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+ <tr>
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+ <td>
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+ <pre class="lines">
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+
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+ 66
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+ 67
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+ 68
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+ 69
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+ 70
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+ 71</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/evolvable/selection.rb', line 66</span>
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+
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+ <span class='kw'>def</span> <span class='id identifier rubyid_call'>call</span><span class='lparen'>(</span><span class='id identifier rubyid_population'>population</span><span class='rparen'>)</span>
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+ <span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_parent_evolvables'>parent_evolvables</span> <span class='op'>=</span> <span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_selected_evolvables'>selected_evolvables</span><span class='period'>.</span><span class='id identifier rubyid_empty?'>empty?</span> <span class='op'>?</span> <span class='id identifier rubyid_select_evolvables'>select_evolvables</span><span class='lparen'>(</span><span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_evolvables'>evolvables</span><span class='rparen'>)</span> <span class='op'>:</span> <span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_selected_evolvables'>selected_evolvables</span>
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+ <span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_selected_evolvables'>selected_evolvables</span> <span class='op'>=</span> <span class='lbracket'>[</span><span class='rbracket'>]</span>
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+ <span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_evolvables'>evolvables</span> <span class='op'>=</span> <span class='lbracket'>[</span><span class='rbracket'>]</span>
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+ <span class='id identifier rubyid_population'>population</span>
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+ <span class='kw'>end</span></pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+
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+ <div class="method_details ">
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+ <h3 class="signature " id="select_evolvables-instance_method">
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+
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+ #<strong>select_evolvables</strong>(evolvables) &#x21d2; <tt>Array&lt;<span class='object_link'><a href="../Evolvable.html" title="Evolvable (module)">Evolvable</a></span>&gt;</tt>
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+
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+
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+
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+
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+
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+ </h3><div class="docstring">
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+ <div class="discussion">
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+ <p>Selects the best evolvables from the given collection.
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+ By default, selects the last N evolvables, where N is the selection size.
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+ This assumes evolvables are already sorted in the evaluation step, with the best at the end.</p>
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+
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+ <p>Override this method in a subclass to implement different selection strategies
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+ such as tournament selection or roulette wheel selection.</p>
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+
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+
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+ </div>
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+ </div>
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+ <div class="tags">
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+
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+ <div class="examples">
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+ <h4 class="tag_title">Examples:</h4>
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+
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+
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+ <pre class="example code"><code><span class='comment'># A custom selection strategy using tournament selection
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+ </span><span class='kw'>class</span> <span class='const'>TournamentSelection</span> <span class='op'>&lt;</span> <span class='const'><span class='object_link'><a href="../Evolvable.html" title="Evolvable (module)">Evolvable</a></span></span><span class='op'>::</span><span class='const'><span class='object_link'><a href="" title="Evolvable::Selection (class)">Selection</a></span></span>
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+ <span class='kw'>def</span> <span class='id identifier rubyid_select_evolvables'>select_evolvables</span><span class='lparen'>(</span><span class='id identifier rubyid_evolvables'>evolvables</span><span class='rparen'>)</span>
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+ <span class='const'>Array</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='id identifier rubyid_size'>size</span><span class='rparen'>)</span> <span class='kw'>do</span>
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+ <span class='comment'># Randomly select 3 individuals and pick the best one
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+ </span> <span class='id identifier rubyid_evolvables'>evolvables</span><span class='period'>.</span><span class='id identifier rubyid_sample'>sample</span><span class='lparen'>(</span><span class='int'>3</span><span class='rparen'>)</span><span class='period'>.</span><span class='id identifier rubyid_max_by'>max_by</span><span class='lparen'>(</span><span class='op'>&amp;</span><span class='symbol'>:fitness</span><span class='rparen'>)</span>
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+ <span class='kw'>end</span>
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+ <span class='kw'>end</span>
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+ <span class='kw'>end</span></code></pre>
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+
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+ </div>
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+ <p class="tag_title">Parameters:</p>
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+ <ul class="param">
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+
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+ <li>
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+
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+ <span class='name'>evolvables</span>
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+
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+
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+ <span class='type'>(<tt>Array&lt;<span class='object_link'><a href="../Evolvable.html" title="Evolvable (module)">Evolvable</a></span>&gt;</tt>)</span>
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+
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+
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+
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+ &mdash;
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+ <div class='inline'><p>The evolvables to select from</p>
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+ </div>
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+
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+ </li>
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+
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+ </ul>
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+
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+ <p class="tag_title">Returns:</p>
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+ <ul class="return">
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+
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+ <li>
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+
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+
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+ <span class='type'>(<tt>Array&lt;<span class='object_link'><a href="../Evolvable.html" title="Evolvable (module)">Evolvable</a></span>&gt;</tt>)</span>
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+
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+
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+
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+ &mdash;
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+ <div class='inline'><p>The selected evolvables to use as parents</p>
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+ </div>
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+
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+ </li>
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+
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+ </ul>
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+
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+ </div><table class="source_code">
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+ <tr>
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+ <td>
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+ <pre class="lines">
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+
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+
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+ 95
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+ 96
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+ 97</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/evolvable/selection.rb', line 95</span>
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+
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+ <span class='kw'>def</span> <span class='id identifier rubyid_select_evolvables'>select_evolvables</span><span class='lparen'>(</span><span class='id identifier rubyid_evolvables'>evolvables</span><span class='rparen'>)</span>
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+ <span class='id identifier rubyid_evolvables'>evolvables</span><span class='period'>.</span><span class='id identifier rubyid_last'>last</span><span class='lparen'>(</span><span class='ivar'>@size</span><span class='rparen'>)</span>
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+ <span class='kw'>end</span></pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+
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+ </div>
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+
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+ </div>
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+
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+ <div id="footer">
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+ Generated on Sat May 10 18:39:22 2025 by
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+ <a href="https://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
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+ 0.9.37 (ruby-3.4.2).
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+ </div>
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+
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+ </div>
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+ </body>
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+ </html>